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Chen QY, Yin SM, Shao MM, Yi FS, Shi HZ. Machine learning-based Diagnostic model for determining the etiology of pleural effusion using Age, ADA and LDH. Respir Res 2025; 26:170. [PMID: 40316966 PMCID: PMC12048966 DOI: 10.1186/s12931-025-03253-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2025] [Accepted: 04/21/2025] [Indexed: 05/04/2025] Open
Abstract
BACKGROUND Classification of the etiologies of pleural effusion is a critical challenge in clinical practice. Traditional diagnostic methods rely on a simple cut-off method based on the laboratory tests. However, machine learning (ML) offers a novel approach based on artificial intelligence to improving diagnostic accuracy and capture the non-linear relationships. METHOD A retrospective study was conducted using data from patients diagnosed with pleural effusion. The dataset was divided into training and test set with a ratio of 7:3 with 6 machine learning algorithms implemented to diagnosis pleural effusion. Model performances were assessed by accuracy, precision, recall, F1 scores and area under the receiver operating characteristic curve (AUC). Feature importance and average prediction of age, Adenosine (ADA) and Lactate dehydrogenase (LDH) was analyzed. Decision tree was visualized. RESULTS A total of 742 patients were included (training cohort: 522, test cohort: 220), 397 (53.3%) diagnosed with malignant pleural effusion (MPE) and 253 (34.1%) with tuberculous pleural effusion (TPE) in the cohort. All of the 6 models performed well in the diagnosis of MPE, TPE and transudates. Extreme Gradient Boosting and Random Forest performed better in the diagnosis of the MPE, with F1 scores above 0.890, while K-Nearest Neighbors and Tabular Transformer performed better in the diagnosis of the TPE, with F1 scores above 0.870. ADA was identified as the most important feature. The ROC of machine learning model outperformed those of conventional diagnostic thresholds. CONCLUSIONS This study demonstrates that ML models using age, ADA, and LDH can effectively classify the etiologies of pleural effusion, suggesting that ML-based approaches may enhance diagnostic decision-making.
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Affiliation(s)
- Qing-Yu Chen
- Department of Respiratory and Critical Care Medicine, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, 100020, China
| | - Shu-Min Yin
- Department of Respiratory and Critical Care Medicine, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, 100020, China
| | - Ming-Ming Shao
- Department of Respiratory and Critical Care Medicine, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, 100020, China
- Medical Research Center, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, 100020, China
| | - Feng-Shuang Yi
- Department of Respiratory and Critical Care Medicine, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, 100020, China.
- Medical Research Center, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, 100020, China.
| | - Huan-Zhong Shi
- Department of Respiratory and Critical Care Medicine, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, 100020, China.
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Han Z, Zhang Y, Ding W, Zhao X, Jia B, Liu T, Wan L, Xing Z. An Integrated Mycobacterial CT Imaging Dataset with Multispecies Information. Sci Data 2025; 12:533. [PMID: 40157945 PMCID: PMC11954919 DOI: 10.1038/s41597-025-04838-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2024] [Accepted: 03/14/2025] [Indexed: 04/01/2025] Open
Abstract
The increasing global incidence of nontuberculous mycobacterial (NTM) pulmonary disease highlights the need for rapid diagnostic methods to guide timely treatment and prevent antibiotic misuse. While bacterial culture remains the gold standard for diagnosis, its extended turnaround time compromises clinical decision-making. Computed tomography (CT), with its high sensitivity for lung lesions and rapid imaging capabilities, has emerged as a critical diagnostic tool. AI-assisted CT interpretation shows particular promise for improving NTM detection, yet progress has been hindered by limited datasets due to disease rarity. We address this gap by introducing the first comprehensive CT dataset combining 430 NTM and 871 tuberculosis cases, supplemented with clinical parameters including demographics, symptoms, and mycobacterial species data. This resource aims to catalyze AI algorithm development for differential diagnosis, ultimately enhancing precision in NTM management through advanced machine learning applications.
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Affiliation(s)
- Zhilin Han
- Department of radiology, Tianjin Haihe Hospital, TCM Key Research Laboratory for Infectious Disease Prevention for State Administration of Traditional Chinese Medicine, Tianjin Institute of Respiratory Diseases, Haihe Hospital, Tianjin University, Tianjin, China
- Academy of medical engineering and translational medicine, Tianjin University, Tianjin, China
| | - Yuyang Zhang
- Haihe Clinical College, Tianjin Medical University, Tianjin, China
| | - Wenlong Ding
- Department of radiology, Tianjin Haihe Hospital, TCM Key Research Laboratory for Infectious Disease Prevention for State Administration of Traditional Chinese Medicine, Tianjin Institute of Respiratory Diseases, Haihe Hospital, Tianjin University, Tianjin, China
| | - Xiaoting Zhao
- Academy of medical engineering and translational medicine, Tianjin University, Tianjin, China
| | - Bingzhen Jia
- Department of radiology, Tianjin Haihe Hospital, TCM Key Research Laboratory for Infectious Disease Prevention for State Administration of Traditional Chinese Medicine, Tianjin Institute of Respiratory Diseases, Haihe Hospital, Tianjin University, Tianjin, China
| | - Tingting Liu
- Department of radiology, Tianjin Haihe Hospital, TCM Key Research Laboratory for Infectious Disease Prevention for State Administration of Traditional Chinese Medicine, Tianjin Institute of Respiratory Diseases, Haihe Hospital, Tianjin University, Tianjin, China
| | - Liang Wan
- Academy of medical engineering and translational medicine, Tianjin University, Tianjin, China.
| | - Zhiheng Xing
- Department of radiology, Tianjin Haihe Hospital, TCM Key Research Laboratory for Infectious Disease Prevention for State Administration of Traditional Chinese Medicine, Tianjin Institute of Respiratory Diseases, Haihe Hospital, Tianjin University, Tianjin, China.
- Haihe Clinical College, Tianjin Medical University, Tianjin, China.
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Wu C, Liu W, Mei P, Liu Y, Cai J, Liu L, Wang J, Ling X, Wang M, Cheng Y, He M, He Q, He Q, Yuan X, Tong J. The large language model diagnoses tuberculous pleural effusion in pleural effusion patients through clinical feature landscapes. Respir Res 2025; 26:52. [PMID: 39939874 PMCID: PMC11823098 DOI: 10.1186/s12931-025-03130-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2024] [Accepted: 01/30/2025] [Indexed: 02/14/2025] Open
Abstract
BACKGROUND Tuberculous pleural effusion (TPE) is a challenging extrapulmonary manifestation of tuberculosis, with traditional diagnostic methods often involving invasive surgery and being time-consuming. While various machine learning and statistical models have been proposed for TPE diagnosis, these methods are typically limited by complexities in data processing and difficulties in feature integration. Therefore, this study aims to develop a diagnostic model for TPE using ChatGPT-4, a large language model (LLM), and compare its performance with traditional logistic regression and machine learning models. By highlighting the advantages of LLMs in handling complex clinical data, identifying interrelationships between features, and improving diagnostic accuracy, this study seeks to provide a more efficient and precise solution for the early diagnosis of TPE. METHODS We conducted a cross-sectional study, collecting clinical data from 109 TPE and 54 non-TPE patients for analysis, selecting 73 features from over 600 initial variables. The performance of the LLM was compared with logistic regression and machine learning models (k-Nearest Neighbors, Random Forest, Support Vector Machines) using metrics like area under the curve (AUC), F1 score, sensitivity, and specificity. RESULTS The LLM showed comparable performance to machine learning models, outperforming logistic regression in sensitivity, specificity, and overall diagnostic accuracy. Key features such as adenosine deaminase (ADA) levels and monocyte percentage were effectively integrated into the model. We also developed a Python package ( https://pypi.org/project/tpeai/ ) for rapid TPE diagnosis based on clinical data. CONCLUSIONS The LLM-based model offers a non-surgical, accurate, and cost-effective method for early TPE diagnosis. The Python package provides a user-friendly tool for clinicians, with potential for broader use. Further validation in larger datasets is needed to optimize the model for clinical application.
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Affiliation(s)
- Chaoling Wu
- Department of Respiratory Medicine, Affiliated Hospital of Jiujiang University, No. 57 East Xunyang Road, Xunyang District, Jiujiang, 332000, China
| | - Wanyi Liu
- Department of Hematology, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, 362000, China
| | - Pengfei Mei
- Department of Gastroenterology, Affiliated Hospital of Jiujiang University, Jiujiang, 332000, China
| | - Yunyun Liu
- Department of Respiratory Medicine, Affiliated Hospital of Jiujiang University, No. 57 East Xunyang Road, Xunyang District, Jiujiang, 332000, China
| | - Jian Cai
- Department of Cardiology, Affiliated Hospital of Jiujiang University, Jiujiang, 332000, China
| | - Lu Liu
- Department of Respiratory Medicine, Affiliated Hospital of Jiujiang University, No. 57 East Xunyang Road, Xunyang District, Jiujiang, 332000, China
| | - Juan Wang
- Department of Gastroenterology, Affiliated Hospital of Jiujiang University, Jiujiang, 332000, China
| | - Xuefeng Ling
- Department of Respiratory Medicine, Affiliated Hospital of Jiujiang University, No. 57 East Xunyang Road, Xunyang District, Jiujiang, 332000, China
| | - Mingxue Wang
- Department of Respiratory Medicine, Affiliated Hospital of Jiujiang University, No. 57 East Xunyang Road, Xunyang District, Jiujiang, 332000, China
| | - Yuanyuan Cheng
- Department of Respiratory Medicine, Affiliated Hospital of Jiujiang University, No. 57 East Xunyang Road, Xunyang District, Jiujiang, 332000, China
| | - Manbi He
- Department of Respiratory Medicine, Affiliated Hospital of Jiujiang University, No. 57 East Xunyang Road, Xunyang District, Jiujiang, 332000, China
| | - Qin He
- Department of Respiratory Medicine, Affiliated Hospital of Jiujiang University, No. 57 East Xunyang Road, Xunyang District, Jiujiang, 332000, China
| | - Qi He
- Department of Respiratory Medicine, Affiliated Hospital of Jiujiang University, No. 57 East Xunyang Road, Xunyang District, Jiujiang, 332000, China
| | - Xiaoliang Yuan
- Department of Respiratory Medicine, First Affiliated Hospital of Gannan Medical University, No. 23, Qingnian Road, Zhanggong District, Ganzhou, 341000, China.
| | - Jianlin Tong
- Department of Respiratory Medicine, Affiliated Hospital of Jiujiang University, No. 57 East Xunyang Road, Xunyang District, Jiujiang, 332000, China.
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Zhou X, Chen Y, Gui W, Heidari AA, Cai Z, Wang M, Chen H, Li C. Enhanced differential evolution algorithm for feature selection in tuberculous pleural effusion clinical characteristics analysis. Artif Intell Med 2024; 153:102886. [PMID: 38749310 DOI: 10.1016/j.artmed.2024.102886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 03/17/2024] [Accepted: 04/27/2024] [Indexed: 06/11/2024]
Abstract
Tuberculous pleural effusion poses a significant threat to human health due to its potential for severe disease and mortality. Without timely treatment, it may lead to fatal consequences. Therefore, early identification and prompt treatment are crucial for preventing problems such as chronic lung disease, respiratory failure, and death. This study proposes an enhanced differential evolution algorithm based on colony predation and dispersed foraging strategies. A series of experiments conducted on the IEEE CEC 2017 competition dataset validated the global optimization capability of the method. Additionally, a binary version of the algorithm is introduced to assess the algorithm's ability to address feature selection problems. Comprehensive comparisons of the effectiveness of the proposed algorithm with 8 similar algorithms were conducted using public datasets with feature sizes ranging from 10 to 10,000. Experimental results demonstrate that the proposed method is an effective feature selection approach. Furthermore, a predictive model for tuberculous pleural effusion is established by integrating the proposed algorithm with support vector machines. The performance of the proposed model is validated using clinical records collected from 140 tuberculous pleural effusion patients, totaling 10,780 instances. Experimental results indicate that the proposed model can identify key correlated indicators such as pleural effusion adenosine deaminase, temperature, white blood cell count, and pleural effusion color, aiding in the clinical feature analysis of tuberculous pleural effusion and providing early warning for its treatment and prediction.
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Affiliation(s)
- Xinsen Zhou
- Institute of Big Data and Information Technology, Wenzhou University, Wenzhou 325000, China.
| | - Yi Chen
- Institute of Big Data and Information Technology, Wenzhou University, Wenzhou 325000, China.
| | - Wenyong Gui
- Institute of Big Data and Information Technology, Wenzhou University, Wenzhou 325000, China.
| | - Ali Asghar Heidari
- School of Surveying and Geospatial Engineering, College of Engineering, University of Tehran, Tehran, Iran.
| | - Zhennao Cai
- Institute of Big Data and Information Technology, Wenzhou University, Wenzhou 325000, China.
| | - Mingjing Wang
- School of Data Science and Artificial Intelligence, Wenzhou University of Technology, Wenzhou 325000, China.
| | - Huiling Chen
- Institute of Big Data and Information Technology, Wenzhou University, Wenzhou 325000, China.
| | - Chengye Li
- Department of Pulmonary and Critical Care Medicine, the First Affiliated Hospital of Wenzhou Medical University, Wenzhou 325000, China.
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Yang J, Zheng X, Pan J, Chen Y, Chen C, Huang Z. Advancing intrauterine adhesion severity prediction: Integrative machine learning approach with hysteroscopic cold knife system, clinical characteristics and hematological parameters. Comput Biol Med 2024; 177:108599. [PMID: 38796878 DOI: 10.1016/j.compbiomed.2024.108599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Revised: 04/19/2024] [Accepted: 05/11/2024] [Indexed: 05/29/2024]
Abstract
Intrauterine Adhesion (IUA) constitute a significant determinant impacting female fertility, potentially leading to infertility, miscarriage, menstrual irregularities, and placental complications. The precise assessment of the severity of IUA is pivotal for the customization of personalized treatment plans, aimed at enhancing the success rate of treatments and mitigating reproductive health risks. This study proposes bTLSMA-SVM-FS, a novel feature selection machine learning model that integrates an enhanced slime mould algorithm (SMA), termed TLSMA, with support vector machines (SVM), aiming to develop a predictive model for assessing the severity of IUA. Initially, a series of optimization comparative experiments were conducted on the TLSMA using the CEC 2017 benchmark functions. By comparing it with eleven meta-heuristic algorithms as well as eleven SOTA algorithms, the experimental outcomes corroborated the superior performance of the TLSMA. Subsequently, the developed bTLSMA-SVM-FS model was employed to conduct a thorough analysis of the clinical features of 107 IUA patients from Wenzhou People's Hospital, comprising 61 cases of moderate IUA and 46 cases of severe IUA. The evaluation results of the model demonstrated exceptional performance in predicting the severity of IUA, achieving an accuracy of 86.700 % and a specificity of 87.609 %. Moreover, the model successfully identified critical factors influencing the prediction of IUA severity, including the preoperative Chinese IUA score, production times, thrombin time, preoperative endometrial thickness, and menstruation. The identification of these key factors not only further validated the efficacy of the proposed model but also provided vital scientific evidence for a deeper understanding of the pathogenesis of IUA and the enhancement of targeted treatment strategies.
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Affiliation(s)
- Jie Yang
- Department of Obstetrics and Gynecology, The Third Clinical Institute Affiliated to Wenzhou Medical University, Wenzhou People's Hospital, Wenzhou, 325000, China.
| | - Xiaodong Zheng
- Department of Obstetrics and Gynecology, The Third Clinical Institute Affiliated to Wenzhou Medical University, Wenzhou People's Hospital, Wenzhou, 325000, China.
| | - Jiajia Pan
- Department of Obstetrics and Gynecology, The Third Clinical Institute Affiliated to Wenzhou Medical University, Wenzhou People's Hospital, Wenzhou, 325000, China.
| | - Yumei Chen
- Department of Obstetrics and Gynecology, The Third Clinical Institute Affiliated to Wenzhou Medical University, Wenzhou People's Hospital, Wenzhou, 325000, China.
| | - Cong Chen
- Department of Obstetrics and Gynecology, The Third Clinical Institute Affiliated to Wenzhou Medical University, Wenzhou People's Hospital, Wenzhou, 325000, China.
| | - Zhiqiong Huang
- Department of Obstetrics and Gynecology, The Third Clinical Institute Affiliated to Wenzhou Medical University, Wenzhou People's Hospital, Wenzhou, 325000, China.
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Lin J, Zhu F, Dong X, Li R, Liu J, Xia J. Enhancing gastric cancer early detection: A multi-verse optimized feature selection model with crossover-information feedback. Comput Biol Med 2024; 175:108535. [PMID: 38714049 DOI: 10.1016/j.compbiomed.2024.108535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 04/05/2024] [Accepted: 04/28/2024] [Indexed: 05/09/2024]
Abstract
Gastric cancer (GC), an acknowledged malignant neoplasm, threatens life and digestive system functionality if not detected and addressed promptly in its nascent stages. The indispensability of early detection for GC to augment treatment efficacy and survival prospects forms the crux of this investigation. Our study introduces an innovative wrapper-based feature selection methodology, referred to as bCIFMVO-FKNN-FS, which integrates a crossover-information feedback multi-verse optimizer (CIFMVO) with the fuzzy k-nearest neighbors (FKNN) classifier. The primary goal of this initiative is to develop an advanced screening model designed to accelerate the identification of patients with early-stage GC. Initially, the capability of CIFMVO is validated through its application to the IEEE CEC benchmark functions, during which its optimization efficiency is measured against eleven cutting-edge algorithms across various dimensionalities-10, 30, 50, and 100. Subsequent application of the bCIFMVO-FKNN-FS model to the clinical data of 1632 individuals from Wenzhou Central Hospital-diagnosed with either early-stage GC or chronic gastritis-demonstrates the model's formidable predictive accuracy (83.395%) and sensitivity (87.538%). Concurrently, this investigation delineates age, gender, serum gastrin-17, serum pepsinogen I, and the serum pepsinogen I to serum pepsinogen II ratio as parameters significantly associated with early-stage GC. These insights not only validate the efficacy of our proposed model in the early screening of GC but also contribute substantively to the corpus of knowledge facilitating early diagnosis.
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Affiliation(s)
- Jiejun Lin
- Department of Gastroenterology, The Dingli Clinical College of Wenzhou Medical University (Wenzhou Central Hospital), Wenzhou, Zhejiang, 325000, China.
| | - Fangchao Zhu
- Department of Gastroenterology, The Dingli Clinical College of Wenzhou Medical University (Wenzhou Central Hospital), Wenzhou, Zhejiang, 325000, China.
| | - Xiaoyu Dong
- Department of Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, 325000, China.
| | - Rizeng Li
- Department of General Surgery, The Dingli Clinical College of Wenzhou Medical University (Wenzhou Central Hospital), Wenzhou, Zhejiang, 325000, China.
| | - Jisheng Liu
- Department of General Surgery, The Dingli Clinical College of Wenzhou Medical University (Wenzhou Central Hospital), Wenzhou, Zhejiang, 325000, China.
| | - Jianfu Xia
- Department of General Surgery, The Dingli Clinical College of Wenzhou Medical University (Wenzhou Central Hospital), Wenzhou, Zhejiang, 325000, China.
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Zhang Y, Zhang L, Lv H, Zhang G. Ensemble machine learning prediction of hyperuricemia based on a prospective health checkup population. Front Physiol 2024; 15:1357404. [PMID: 38665596 PMCID: PMC11043598 DOI: 10.3389/fphys.2024.1357404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 03/11/2024] [Indexed: 04/28/2024] Open
Abstract
Objectives: An accurate prediction model for hyperuricemia (HUA) in adults remain unavailable. This study aimed to develop a stacking ensemble prediction model for HUA to identify high-risk groups and explore risk factors. Methods: A prospective health checkup cohort of 40899 subjects was examined and randomly divided into the training and validation sets with the ratio of 7:3. LASSO regression was employed to screen out important features and then the ROSE sampling was used to handle the imbalanced classes. An ensemble model using stacking strategy was constructed based on three individual models, including support vector machine, decision tree C5.0, and eXtreme gradient boosting. Model validations were conducted using the area under the receiver operating characteristic curve (AUC) and the calibration curve, as well as metrics including accuracy, sensitivity, specificity, positive predictive value, negative predictive value, and F1 score. A model agnostic instance level variable attributions technique (iBreakdown) was used to illustrate the black-box nature of our ensemble model, and to identify contributing risk factors. Results: Fifteen important features were screened out of 23 clinical variables. Our stacking ensemble model with an AUC of 0.854, outperformed the other three models, support vector machine, decision tree C5.0, and eXtreme gradient boosting with AUCs of 0.848, 0.851 and 0.849 respectively. Calibration accuracy as well as other metrics including accuracy, specificity, negative predictive value, and F1 score were also proved our ensemble model's superiority. The contributing risk factors were estimated using six randomly selected subjects, which showed that being female and relatively younger, together with having higher baseline uric acid, body mass index, γ-glutamyl transpeptidase, total protein, triglycerides, creatinine, and fasting blood glucose can increase the risk of HUA. To further validate our model's applicability in the health checkup population, we used another cohort of 8559 subjects that also showed our ensemble prediction model had favorable performances with an AUC of 0.846. Conclusion: In this study, the stacking ensemble prediction model for HUA was developed, and it outperformed three individual models that compose it (support vector machine, decision tree C5.0, and eXtreme gradient boosting). The contributing risk factors were identified with insightful ideas.
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Affiliation(s)
- Yongsheng Zhang
- Health Management Center, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, China
- Institute of Health Management, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, China
- Shandong Engineering Laboratory of Health Management, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, China
| | - Li Zhang
- Department of Pharmacology, Jinan Central Hospital Affiliated to Shandong First Medical University, Jinan, China
| | - Haoyue Lv
- Health Management Center, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, China
- Institute of Health Management, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, China
- Shandong Engineering Laboratory of Health Management, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, China
| | - Guang Zhang
- Health Management Center, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, China
- Institute of Health Management, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, China
- Shandong Engineering Laboratory of Health Management, The First Affiliated Hospital of Shandong First Medical University and Shandong Provincial Qianfoshan Hospital, Jinan, China
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Kim NY, Jang B, Gu KM, Park YS, Kim YG, Cho J. Differential Diagnosis of Pleural Effusion Using Machine Learning. Ann Am Thorac Soc 2024; 21:211-217. [PMID: 37788372 DOI: 10.1513/annalsats.202305-410oc] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Accepted: 10/03/2023] [Indexed: 10/05/2023] Open
Abstract
Rationale: Differential diagnosis of pleural effusion is challenging in clinical practice. Objectives: We aimed to develop a machine learning model to classify the five common causes of pleural effusions. Methods: This retrospective study collected 49 features from clinical information, blood, and pleural fluid of adult patients who underwent diagnostic thoracentesis between October 2013 and December 2018. Pleural effusions were classified into the following five categories: transudative, malignant, parapneumonic, tuberculous, and other. The performance of five different classifiers, including multinomial logistic regression, support vector machine, random forest, extreme gradient boosting, and light gradient boosting machine (LGB), was evaluated in terms of accuracy and area under the receiver operating characteristic curve through fivefold cross-validation. Hybrid feature selection was applied to determine the most relevant features for classifying pleural effusion. Results: We analyzed 2,253 patients (training set, n = 1,459; validation set, n = 365; extra-validation set, n = 429) and found that the LGB model achieved the best performance in both validation and extra-validation sets. After feature selection, the accuracy of the LGB model with the selected 18 features was equivalent to that with all 49 features (mean ± standard deviation): 0.818 ± 0.012 and 0.777 ± 0.007 in the validation and extra-validation sets, respectively. The model's mean area under the receiver operating characteristic curve was as high as 0.930 ± 0.042 and 0.916 ± 0.044 in the validation and extra-validation sets, respectively. In our model, pleural lactate dehydrogenase, protein, and adenosine deaminase levels were the most important factors for classifying pleural effusions. Conclusions: Our LGB model showed satisfactory performance for differential diagnosis of the common causes of pleural effusions. This model could provide clinicians with valuable information regarding the major differential diagnoses of pleural diseases.
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Affiliation(s)
- Na Young Kim
- Division of Pulmonary, Allergy, and Critical Care Medicine, Department of Internal Medicine, Hallym University Dongtan Sacred Heart Hospital, Hwaseong, Republic of Korea
| | - Boa Jang
- Department of Transdisciplinary Medicine and
- Interdisciplinary Program in Bioengineering, College of Engineering, Seoul National University, Seoul, Republic of Korea
| | - Kang-Mo Gu
- Department of Internal Medicine, Chung-Ang University College of Medicine, Seoul, Republic of Korea
| | - Young Sik Park
- Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, Seoul National University Hospital, Seoul, Republic of Korea
| | - Young-Gon Kim
- Department of Transdisciplinary Medicine and
- Department of Medicine and
| | - Jaeyoung Cho
- Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, Seoul National University Hospital, Seoul, Republic of Korea
- Department of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea
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9
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Liu Y, Liang Z, Yang J, Yuan S, Wang S, Huang W, Wu A. Diagnostic and comparative performance for the prediction of tuberculous pleural effusion using machine learning algorithms. Int J Med Inform 2024; 182:105320. [PMID: 38118260 DOI: 10.1016/j.ijmedinf.2023.105320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 12/05/2023] [Accepted: 12/15/2023] [Indexed: 12/22/2023]
Abstract
OBJECTIVE Early diagnosis and differential diagnosis of tuberculous pleural effusion (TPE) remains challenging and is critical to the patients' prognosis. The present study aimed to develop nine machine learning (ML) algorithms for early diagnosis of TPE and compare their performance. METHODS A total of 1435 untreated patients with pleural effusions (PEs) were retrospectively included and divided into the training set (80%) and the test set (20%). The demographic and laboratory variables were collected, preprocessed, and analyzed to select features, which were fed into nine ML algorithms to develop an optimal diagnostic model for TPE. The proposed model was validated by an independently external data. The decision curve analysis (DCA) and the SHapley Additive exPlanations (SHAP) were also applied. RESULTS Support vector machine (SVM) was the best model in discriminating TPE from non-TPE, with a balanced accuracy of 87.7%, precision of 85.3%, area under the curve (AUC) of 0.914, sensitivity of 94.7%, specificity of 80.7%, and F1-score of 86.0% among the nine ML algorithms. The excellent diagnostic performance was also validated by the external data (a balanced accuracy of 87.7%, precision of 85.2%, and AUC of 0.898). Neural network (NN) and K-nearest neighbor (KNN) had better net benefits in clinical usefulness. Besides, PE adenosine deaminase (ADA), PE carcinoembryonic antigen (CEA), and serum CYFRA21-1 were identified as the top three important features for diagnosing TPE. CONCLUSIONS This study developed and validated a SVM model for the early diagnosis of TPE, which might help clinicians provide better diagnosis and treatment for TPE patients.
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Affiliation(s)
- Yanqing Liu
- Department of Laboratory Medicine, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China
| | - Zhigang Liang
- Department of Thoracic Surgery, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China
| | - Jing Yang
- Department of Respiratory and Critical Care Medicine, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China
| | - Songbo Yuan
- Department of Laboratory Medicine, The Affiliated People's Hospital of Ningbo University, Ningbo, Zhejiang, China
| | - Shanshan Wang
- Department of Laboratory Medicine, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China
| | - Weina Huang
- Department of Respiratory and Critical Care Medicine, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China.
| | - Aihua Wu
- Department of Laboratory Medicine, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China.
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10
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Fong TH, Shi W, Ruan G, Li S, Liu G, Yang L, Wu K, Fan J, Ng CL, Hu Y, Jiang H. Tuberculostearic acid incorporated predictive model contributes to the clinical diagnosis of tuberculous meningitis. iScience 2023; 26:107858. [PMID: 37766994 PMCID: PMC10520543 DOI: 10.1016/j.isci.2023.107858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 08/05/2023] [Accepted: 09/06/2023] [Indexed: 09/29/2023] Open
Abstract
The conventional confirmation tests of tuberculous meningitis (TBM) are usually low in sensitivity, leading to high TBM mortality. Hence, sensitive methods for indicating the presence of bacilli are required. Tuberculostearic acid (TBSA), a constituent from Mycobacterium tuberculosis had been evaluated as a promising marker, but fails to demonstrate consistent results for definite TBM. This study retrospectively reviewed medical records of 113 TBM suspects, constructing a TBSA-combined scoring system based on multiple factors, which show sensitivity and specificity of 0.8148 and 0.8814, respectively, and the area under the receiver operating characteristic curve of 0.9010. Multivariate analyses revealed four co-predictive factors strongly associated with TBSA: extra-neural tuberculosis, basal meningeal enhancement, CSF glucose/Serum glucose <0.595, and coinfection in CNS (Total). The subsequent machine learning-based validation showed correspondent importance to factors in the TBSA model. This study demonstrates a simple scoring system to facilitate TBM prediction, yield reliable diagnoses and allow timely treatment initiation.
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Affiliation(s)
- Tsz Hei Fong
- Department of Neurology, Nanfang Hospital, Southern Medical University, Guangzhou 510515, China
| | - Wangpan Shi
- The First Clinical Medical School, Southern Medical University, Guangzhou 510515, China
| | - Guohui Ruan
- School of Biomedical Engineering, Southern Medical University, Guangzhou 510515, China
| | - Siyi Li
- The First Clinical Medical School, Southern Medical University, Guangzhou 510515, China
| | - Guanghui Liu
- Department of Neurology, Nanfang Hospital, Southern Medical University, Guangzhou 510515, China
| | - Leyun Yang
- Department of Biostatistics, Bioinformatics, and Biomathematics, Georgetown University, Washington, DC 20057-1484, USA
| | - Kaibin Wu
- School of Biomedical Engineering, Southern Medical University, Guangzhou 510515, China
| | - Jingxian Fan
- Department of Neurology, Nanfang Hospital, Southern Medical University, Guangzhou 510515, China
| | - Chung Lam Ng
- The First Clinical Medical School, Southern Medical University, Guangzhou 510515, China
| | - Yafang Hu
- Department of Neurology, Nanfang Hospital, Southern Medical University, Guangzhou 510515, China
| | - Haishan Jiang
- Department of Neurology, Nanfang Hospital, Southern Medical University, Guangzhou 510515, China
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11
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Synthesis and Modification of Nanoparticles with Ionic Liquids: a Review. BIONANOSCIENCE 2023. [DOI: 10.1007/s12668-023-01075-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
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12
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Li C, Hou L, Pan J, Chen H, Cai X, Liang G. Tuberculous pleural effusion prediction using ant colony optimizer with grade-based search assisted support vector machine. Front Neuroinform 2022; 16:1078685. [PMID: 36601381 PMCID: PMC9806141 DOI: 10.3389/fninf.2022.1078685] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Accepted: 11/28/2022] [Indexed: 12/23/2022] Open
Abstract
Introduction Although tuberculous pleural effusion (TBPE) is simply an inflammatory response of the pleura caused by tuberculosis infection, it can lead to pleural adhesions and cause sequelae of pleural thickening, which may severely affect the mobility of the chest cavity. Methods In this study, we propose bGACO-SVM, a model with good diagnostic power, for the adjunctive diagnosis of TBPE. The model is based on an enhanced continuous ant colony optimization (ACOR) with grade-based search technique (GACO) and support vector machine (SVM) for wrapped feature selection. In GACO, grade-based search greatly improves the convergence performance of the algorithm and the ability to avoid getting trapped in local optimization, which improves the classification capability of bGACO-SVM. Results To test the performance of GACO, this work conducts comparative experiments between GACO and nine basic algorithms and nine state-of-the-art variants as well. Although the proposed GACO does not offer much advantage in terms of time complexity, the experimental results strongly demonstrate the core advantages of GACO. The accuracy of bGACO-predictive SVM was evaluated using existing datasets from the UCI and TBPE datasets. Discussion In the TBPE dataset trial, 147 TBPE patients were evaluated using the created bGACO-SVM model, showing that the bGACO-SVM method is an effective technique for accurately predicting TBPE.
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Affiliation(s)
- Chengye Li
- Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China
| | - Lingxian Hou
- Department of Rehabilitation, Wenzhou Hospital of Integrated Traditional Chinese and Western Medicine, Wenzhou, China
| | - Jingye Pan
- Key Laboratory of Intelligent Treatment and Life Support for Critical Diseases of Zhejiang Province, Wenzhou, Zhejiang, China,Collaborative Innovation Center for Intelligence Medical Education, Wenzhou, Zhejiang, China,Zhejiang Engineering Research Center for Hospital Emergency and Process Digitization, Wenzhou, Zhejiang, China,Department of Intensive Care Unit, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China
| | - Huiling Chen
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, Zhejiang, China,*Correspondence: Huiling Chen,
| | - Xueding Cai
- Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China,Xueding Cai,
| | - Guoxi Liang
- Department of Information Technology, Wenzhou Polytechnic, Wenzhou, China
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13
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A review of recent advances in carbon dioxide absorption–stripping by employing a gas–liquid hollow fiber polymeric membrane contactor. Polym Bull (Berl) 2022. [DOI: 10.1007/s00289-022-04626-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
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14
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Yang Q, Li B, Wang P, Xie J, Feng Y, Liu Z, Zhu F. LargeMetabo: an out-of-the-box tool for processing and analyzing large-scale metabolomic data. Brief Bioinform 2022; 23:bbac455. [PMID: 36274234 DOI: 10.1093/bib/bbac455] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2022] [Revised: 09/06/2022] [Accepted: 09/24/2022] [Indexed: 12/14/2022] Open
Abstract
Large-scale metabolomics is a powerful technique that has attracted widespread attention in biomedical studies focused on identifying biomarkers and interpreting the mechanisms of complex diseases. Despite a rapid increase in the number of large-scale metabolomic studies, the analysis of metabolomic data remains a key challenge. Specifically, diverse unwanted variations and batch effects in processing many samples have a substantial impact on identifying true biological markers, and it is a daunting challenge to annotate a plethora of peaks as metabolites in untargeted mass spectrometry-based metabolomics. Therefore, the development of an out-of-the-box tool is urgently needed to realize data integration and to accurately annotate metabolites with enhanced functions. In this study, the LargeMetabo package based on R code was developed for processing and analyzing large-scale metabolomic data. This package is unique because it is capable of (1) integrating multiple analytical experiments to effectively boost the power of statistical analysis; (2) selecting the appropriate biomarker identification method by intelligent assessment for large-scale metabolic data and (3) providing metabolite annotation and enrichment analysis based on an enhanced metabolite database. The LargeMetabo package can facilitate flexibility and reproducibility in large-scale metabolomics. The package is freely available from https://github.com/LargeMetabo/LargeMetabo.
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Affiliation(s)
- Qingxia Yang
- Department of Bioinformatics, Smart Health Big Data Analysis and Location Services Engineering Lab of Jiangsu Province, School of Geographic and Biologic Information, Nanjing University of Posts and Telecommunications, Nanjing, 210023, China
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Bo Li
- College of Life Sciences, Chongqing Normal University, Chongqing, Chongqing 401331, China
| | - Panpan Wang
- College of Chemistry and Pharmaceutical Engineering, Huanghuai University, Zhumadian 463000, China
| | - Jicheng Xie
- Department of Bioinformatics, Smart Health Big Data Analysis and Location Services Engineering Lab of Jiangsu Province, School of Geographic and Biologic Information, Nanjing University of Posts and Telecommunications, Nanjing, 210023, China
| | - Yuhao Feng
- Department of Bioinformatics, Smart Health Big Data Analysis and Location Services Engineering Lab of Jiangsu Province, School of Geographic and Biologic Information, Nanjing University of Posts and Telecommunications, Nanjing, 210023, China
| | - Ziqiang Liu
- Department of Bioinformatics, Smart Health Big Data Analysis and Location Services Engineering Lab of Jiangsu Province, School of Geographic and Biologic Information, Nanjing University of Posts and Telecommunications, Nanjing, 210023, China
| | - Feng Zhu
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
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15
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Chen Y, Zheng C, Hu F, Zhou T, Feng L, Xu G, Yi Z, Zhang X. Efficient two-step liver and tumour segmentation on abdominal CT via deep learning and a conditional random field. Comput Biol Med 2022; 150:106076. [PMID: 36137320 DOI: 10.1016/j.compbiomed.2022.106076] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 08/20/2022] [Accepted: 09/03/2022] [Indexed: 11/24/2022]
Abstract
Segmentation of the liver and tumours from computed tomography (CT) scans is an important task in hepatic surgical planning. Manual segmentation of the liver and tumours is a time-consuming and labour-intensive task; therefore, a fully automated method for performing this segmentation is particularly desired. An automatic two-step liver and tumour segmentation method is presented in this paper. A cascade framework is used during the segmentation process, and a fully connected conditional random field (CRF) method is used to refine the tumour segmentation result. First, the proposed fractal residual U-Net (FRA-UNet) is used to locate and initially segment the liver. Then, FRA-UNet is further used to predict liver tumours from the liver region of interest (ROI). Finally, a three-dimensional (3D) CRF is used to refine the tumour segmentation results. The improved fractal residual (FR) structure effectively retains more effective features for improving the segmentation performance of deeper networks, the improved deep residual block can utilise the feature information more effectively, and the 3D CRF method smooths the contours and avoids the tumour oversegmentation problem. FRA-UNet is tested on the Liver Tumour Segmentation challenge dataset (LiTS) and the 3D Image Reconstruction for Comparison of Algorithm Database dataset (3DIRCADb), achieving 97.13% and 97.18% Dice similarity coefficients (DSCs) for liver segmentation and 71.78% and 68.97% DSCs for tumour segmentation, respectively, outperforming most state-of-the-art networks.
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Affiliation(s)
- Ying Chen
- School of Software, Nanchang Hangkong University, Nanchang, 330063, China.
| | - Cheng Zheng
- School of Software, Nanchang Hangkong University, Nanchang, 330063, China.
| | - Fei Hu
- School of Software, Nanchang Hangkong University, Nanchang, 330063, China.
| | - Taohui Zhou
- School of Software, Nanchang Hangkong University, Nanchang, 330063, China.
| | - Longfeng Feng
- School of Software, Nanchang Hangkong University, Nanchang, 330063, China.
| | - Guohui Xu
- Department of Liver Neoplasms, Jiangxi Cancer Hospital, Nanchang, 330029, China.
| | - Zhen Yi
- Department of Radiology, Jiangxi Cancer Hospital, Nanchang, 330029, China.
| | - Xiang Zhang
- Wenzhou Data Management and Development Group Co.,Ltd, Wenzhou, Zhejiang, 325000, China.
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16
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Ji Y, Shi B, Li Y. An evolutionary machine learning for multiple myeloma using Runge Kutta Optimizer from multi characteristic indexes. Comput Biol Med 2022; 150:106189. [PMID: 37859284 DOI: 10.1016/j.compbiomed.2022.106189] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Revised: 10/02/2022] [Accepted: 10/08/2022] [Indexed: 11/26/2022]
Abstract
Multiple myeloma (MM) is a malignant plasma cell disease that is the second most prevalent hematological malignancy in high-income nations and accounts for around 1.8% of all cancers and 18% of hematologic malignancies in the United States. In this research, we try to design a machine learning framework for MM diagnosis from multi characteristic indexes using slime mould Runge Kutta Optimizer (MSRUN) and kernel extreme learning machine, which is called as MSRUN-KELM. An efficient slime mould learning operator is introduced to the initial Runge Kutta Optimizer in MSRUN, ensuring that the trade-off between intensity and diversity is satisfied. The MSRUN was evaluated using IEEE CEC2014 benchmark functions, and the statistical results indicate a significant increase in the search performance of MSRUN. In MSRUN-KELM, kernel extreme machine learning is constructed on MM from multi-characteristic indexes with MSRUN, parameter optimization, and feature selection synchronized by MSRUN. The results of MSRUN-KELM on MM are accuracy of 93.88%, a Matthews correlation coefficient of 0.922677, and sensitivities of 93.41% and 93.19%. The suggested MSRUN-KELM may be utilized to analyze MM from multi-characteristic indexes well, and it can be treated as a potential tool for MM diagnosis.
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Affiliation(s)
- Yazhou Ji
- Department of Hematology, The Affiliated Huai'an No. 1 People's Hospital of Nanjing Medical University, Huai'an, China.
| | - Beibei Shi
- Affiliated People's Hospital of Jiangsu University, 8 Dianli Road, Zhenjiang, Jiangsu 212000, China.
| | - Yuanyuan Li
- Department of Hematology, The Affiliated Huai'an No. 1 People's Hospital of Nanjing Medical University, Huai'an, China.
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17
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Shi B, Ye H, Heidari AA, Zheng L, Hu Z, Chen H, Turabieh H, Mafarja M, Wu P. Analysis of COVID-19 severity from the perspective of coagulation index using evolutionary machine learning with enhanced brain storm optimization. JOURNAL OF KING SAUD UNIVERSITY. COMPUTER AND INFORMATION SCIENCES 2022; 34:4874-4887. [PMID: 38620699 PMCID: PMC8483978 DOI: 10.1016/j.jksuci.2021.09.019] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/11/2021] [Revised: 09/14/2021] [Accepted: 09/18/2021] [Indexed: 01/11/2023]
Abstract
Coronavirus 2019 (COVID-19) is an extreme acute respiratory syndrome. Early diagnosis and accurate assessment of COVID-19 are not available, resulting in ineffective therapeutic therapy. This study designs an effective intelligence framework to early recognition and discrimination of COVID-19 severity from the perspective of coagulation indexes. The framework is proposed by integrating an enhanced new stochastic optimizer, a brain storm optimizing algorithm (EBSO), with an evolutionary machine learning algorithm called EBSO-SVM. Fast convergence and low risk of the local stagnant can be guaranteed for EBSO with added by Harris hawks optimization (HHO), and its property is verified on 23 benchmarks. Then, the EBSO is utilized to perform parameter optimization and feature selection simultaneously for support vector machine (SVM), and the presented EBSO-SVM early recognition and discrimination of COVID-19 severity in terms of coagulation indexes using COVID-19 clinical data. The classification performance of the EBSO-SVM is very promising, reaching 91.9195% accuracy, 90.529% Matthews correlation coefficient, 90.9912% Sensitivity and 88.5705% Specificity on COVID-19. Compared with other existing state-of-the-art methods, the EBSO-SVM in this paper still shows obvious advantages in multiple metrics. The statistical results demonstrate that the proposed EBSO-SVM shows predictive properties for all metrics and higher stability, which can be treated as a computer-aided technique for analysis of COVID-19 severity from the perspective of coagulation.
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Affiliation(s)
- Beibei Shi
- Affiliated People's Hospital of Jiangsu University, 8 Dianli Road, Zhenjiang, Jiangsu 212000, China
- Department of Public Health, International College, Krirk University, Bangkok 10220, Thailand
| | - Hua Ye
- Department of Pulmonary and Critical Care Medicine, Affiliated Yueqing Hospital, Wenzhou Medical University, Yueqing 325600, China
| | - Ali Asghar Heidari
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou 325035, China
| | - Long Zheng
- Department of Pulmonary and Critical Care Medicine, Affiliated Yueqing Hospital, Wenzhou Medical University, Yueqing 325600, China
| | - Zhongyi Hu
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou 325035, China
| | - Huiling Chen
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou 325035, China
- Institute of Big Data and Information Technology, Wenzhou University, Wenzhou 325035, China
| | - Hamza Turabieh
- Department of Information Technology, College of Computers and Information Technology, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
| | - Majdi Mafarja
- Department of Computer Science, Birzeit University, P.O. Box 14, West Bank, Palestine
| | - Peiliang Wu
- Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou 325000, China
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18
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Bian Y, Deng M, Zhang Q, Hou G. Global trends of research on tuberculous pleurisy over the past 15 years: A bibliometric analysis. Front Cell Infect Microbiol 2022; 12:937811. [PMID: 36111237 PMCID: PMC9468418 DOI: 10.3389/fcimb.2022.937811] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Accepted: 07/28/2022] [Indexed: 11/17/2022] Open
Abstract
Tuberculous pleurisy (TP) is a common type of extrapulmonary tuberculosis (EPTB). With the development of research and changes in TP patient characteristics, an increasing number of studies have revealed the prevalence, risk factors, and novel diagnosis techniques. Thus, this bibliometric analysis was performed to identify global scientific output characteristics and research hotspots and frontiers for TP over the past 15 years. We searched the Web of Science Core Collection (WoSCC) Science Citation Index Expanded (SCI-expanded) for literature published between 2007 and 2021 and recorded their information. The Bibliometrix software package was used for bibliometric indicator analysis, and VOSviewer was used to visualize the trends of and hotspots in TP research. A total of 1,464 original articles were reviewed, and the results indicated that the annual number of publications (Np) focusing on TP has increased over the past 15 years. China had the largest number of papers and the highest H-index, and the United States ranked first for number of citations (Nc). EGYPTIAN KNOWLEDGE BANK and PLOS ONE were the most prolific unit and journal, respectively. The use of the Xpert assay and immune-related biomarker detection to diagnose TP appears to be a recent research hotspot. This bibliometric study demonstrated that the number of publications related to TP have tended to increase. China is a major producer, and the United States is an influential country in this field. Research in the past 15 years has been predominantly clinical research. The diagnosis of TP was the focus of research, and the exploration of novel diagnostic techniques, verification of diagnostic markers, and combination of diagnostic methods have been recent research hotspots. Immune-related biomarkers should be given more attention in the field of TP diagnosis.
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Affiliation(s)
- Yiding Bian
- Department of Pulmonary and Critical Care Medicine, Center of Respiratory Medicine, China-Japan Friendship Hospital, Beijing, China
- Graduate School of Peking Union Medical College, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, China
- National Center for Respiratory Medicine, Beijing, China
- Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, China
- National Clinical Research Center for Respiratory Diseases, Beijing, China
| | - Mingming Deng
- Department of Pulmonary and Critical Care Medicine, Center of Respiratory Medicine, China-Japan Friendship Hospital, Beijing, China
- Graduate School of Peking Union Medical College, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, China
- National Center for Respiratory Medicine, Beijing, China
- Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, China
- National Clinical Research Center for Respiratory Diseases, Beijing, China
| | - Qin Zhang
- Department of Pulmonary and Critical Care Medicine, First Hospital of China Medical University, Shenyang, China
| | - Gang Hou
- Department of Pulmonary and Critical Care Medicine, Center of Respiratory Medicine, China-Japan Friendship Hospital, Beijing, China
- Graduate School of Peking Union Medical College, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, China
- National Center for Respiratory Medicine, Beijing, China
- Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, China
- National Clinical Research Center for Respiratory Diseases, Beijing, China
- *Correspondence: Gang Hou,
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19
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GC-CNNnet: Diagnosis of Alzheimer’s Disease with PET Images Using Genetic and Convolutional Neural Network. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:7413081. [PMID: 35983158 PMCID: PMC9381254 DOI: 10.1155/2022/7413081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Revised: 06/01/2022] [Accepted: 06/10/2022] [Indexed: 11/17/2022]
Abstract
There is a wide variety of effects of Alzheimer's disease (AD), a neurodegenerative disease that can lead to cognitive decline, deterioration of daily life, and behavioral and psychological changes. A polymorphism of the ApoE gene ε 4 is considered a genetic risk factor for Alzheimer's disease. The purpose of this paper is to demonstrate that single-nucleotide polymorphic markers (SNPs) have a causal relationship with quantitative PET imaging traits. Additionally, the classification of AD is based on the frequency of brain tissue variations in PET images using a combination of k-nearest-neighbor (KNN), support vector machine (SVM), linear discrimination analysis (LDA), and convolutional neural network (CNN) techniques. According to the results, the suggested SNPs appear to be associated with quantitative traits more strongly than the SNPs in the ApoE genes. Regarding the classification result, the highest accuracy is obtained by the CNN with 91.1%. These results indicate that the KNN and CNN methods are beneficial in diagnosing AD. Nevertheless, the LDA and SVM are demonstrated with a lower level of accuracy.
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20
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Zhang S, Sun X, Mou M, Amahong K, Sun H, Zhang W, Shi S, Li Z, Gao J, Zhu F. REGLIV: Molecular regulation data of diverse living systems facilitating current multiomics research. Comput Biol Med 2022; 148:105825. [PMID: 35872412 DOI: 10.1016/j.compbiomed.2022.105825] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 06/29/2022] [Accepted: 07/03/2022] [Indexed: 12/24/2022]
Abstract
Multiomics is a powerful technique in molecular biology that facilitates the identification of new associations among different molecules (genes, proteins & metabolites). It has attracted tremendous research interest from the scientists worldwide and has led to an explosive number of published studies. Most of these studies are based on the regulation data provided in available databases. Therefore, it is essential to have molecular regulation data that are strictly validated in the living systems of various cell lines and in vivo models. However, no database has been developed yet to provide comprehensive molecular regulation information validated by living systems. Herein, a new database, Molecular Regulation Data of Living System Facilitating Multiomics Study (REGLIV) is introduced to describe various types of molecular regulation tested by the living systems. (1) A total of 2996 regulations describe the changes in 1109 metabolites triggered by alterations in 284 genes or proteins, and (2) 1179 regulations describe the variations in 926 proteins induced by 125 endogenous metabolites. Overall, REGLIV is unique in (a) providing the molecular regulation of a clearly defined regulatory direction other than simple correlation, (b) focusing on molecular regulations that are validated in a living system not simply in an in vitro test, and (c) describing the disease/tissue/species specific property underlying each regulation. Therefore, REGLIV has important implications for the future practice of not only multiomics, but also other fields relevant to molecular regulation. REGLIV is freely accessible at: https://idrblab.org/regliv/.
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Affiliation(s)
- Song Zhang
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Xiuna Sun
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Minjie Mou
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Kuerbannisha Amahong
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Huaicheng Sun
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Wei Zhang
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Shuiyang Shi
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Zhaorong Li
- Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, Alibaba-Zhejiang University Joint Research Center of Future Digital Healthcare, Hangzhou, 330110, China
| | - Jianqing Gao
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, 310058, China; Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang, China
| | - Feng Zhu
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, 310058, China; Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, Alibaba-Zhejiang University Joint Research Center of Future Digital Healthcare, Hangzhou, 330110, China.
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21
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Lu SY, Wang SH, Zhang YD. SAFNet: A deep spatial attention network with classifier fusion for breast cancer detection. Comput Biol Med 2022; 148:105812. [PMID: 35834967 DOI: 10.1016/j.compbiomed.2022.105812] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 06/15/2022] [Accepted: 07/03/2022] [Indexed: 11/28/2022]
Abstract
Breast cancer is a top dangerous killer for women. An accurate early diagnosis of breast cancer is the primary step for treatment. A novel breast cancer detection model called SAFNet is proposed based on ultrasound images and deep learning. We employ a pre-trained ResNet-18 embedded with the spatial attention mechanism as the backbone model. Three randomized network models are trained for prediction in the SAFNet, which are fused by majority voting to produce more accurate results. A public ultrasound image dataset is utilized to evaluate the generalization ability of our SAFNet using 5-fold cross-validation. The simulation experiments reveal that the SAFNet can produce higher classification results compared with four existing breast cancer classification methods. Therefore, our SAFNet is an accurate tool to detect breast cancer that can be applied in clinical diagnosis.
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Affiliation(s)
- Si-Yuan Lu
- School of Computing and Mathematical Sciences, University of Leicester, Leicester, LE1 7RH, UK.
| | - Shui-Hua Wang
- School of Computing and Mathematical Sciences, University of Leicester, Leicester, LE1 7RH, UK.
| | - Yu-Dong Zhang
- School of Computing and Mathematical Sciences, University of Leicester, Leicester, LE1 7RH, UK.
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22
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Predicting Entrepreneurial Intention of Students: Kernel Extreme Learning Machine with Boosted Crow Search Algorithm. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12146907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
College students are the group with the most entrepreneurial vitality and potential. How to cultivate their entrepreneurial and innovative ability is one of the important and urgent issues facing this current social development. This paper proposes a reliable, intelligent prediction model of entrepreneurial intentions, providing theoretical support for guiding college students’ positive entrepreneurial intentions. The model mainly uses the improved crow search algorithm (CSA) to optimize the kernel extreme learning machine (KELM) model with feature selection (FS), namely CSA-KELM-FS, to study entrepreneurial intention. To obtain the best fitting model and key features, the gradient search rule, local escaping operator, and levy flight mutation (GLL) mechanism are introduced to enhance the CSA (GLLCSA), and FS is used to extract the key features. To verify the performance of the proposed GLLCSA, it is compared with eight other state-of-the-art methods. Further, the GLLCSA-KELM-FS model and five other machine learning methods have been used to predict the entrepreneurial intentions of 842 students from the Wenzhou Vocational College in Zhejiang, China, in the past five years. The results show that the proposed model can correctly predict the students’ entrepreneurial intention with an accuracy rate of 93.2% and excellent stability. According to the prediction results of the proposed model, the key factors affecting the student’s entrepreneurial intention are mainly the major studied, campus innovation, entrepreneurship practice experience, and positive personality. Therefore, the proposed GLLCSA-KELM-FS is expected to be an effective tool for predicting students’ entrepreneurial intentions.
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Li F, Yin J, Lu M, Yang Q, Zeng Z, Zhang B, Li Z, Qiu Y, Dai H, Chen Y, Zhu F. ConSIG: consistent discovery of molecular signature from OMIC data. Brief Bioinform 2022; 23:6618243. [PMID: 35758241 DOI: 10.1093/bib/bbac253] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 05/09/2022] [Accepted: 05/31/2022] [Indexed: 12/12/2022] Open
Abstract
The discovery of proper molecular signature from OMIC data is indispensable for determining biological state, physiological condition, disease etiology, and therapeutic response. However, the identified signature is reported to be highly inconsistent, and there is little overlap among the signatures identified from different biological datasets. Such inconsistency raises doubts about the reliability of reported signatures and significantly hampers its biological and clinical applications. Herein, an online tool, ConSIG, was constructed to realize consistent discovery of gene/protein signature from any uploaded transcriptomic/proteomic data. This tool is unique in a) integrating a novel strategy capable of significantly enhancing the consistency of signature discovery, b) determining the optimal signature by collective assessment, and c) confirming the biological relevance by enriching the disease/gene ontology. With the increasingly accumulated concerns about signature consistency and biological relevance, this online tool is expected to be used as an essential complement to other existing tools for OMIC-based signature discovery. ConSIG is freely accessible to all users without login requirement at https://idrblab.org/consig/.
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Affiliation(s)
- Fengcheng Li
- College of Pharmaceutical Sciences, The Second Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou 310058, China
| | - Jiayi Yin
- College of Pharmaceutical Sciences, The Second Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou 310058, China
| | - Mingkun Lu
- College of Pharmaceutical Sciences, The Second Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou 310058, China
| | - Qingxia Yang
- College of Pharmaceutical Sciences, The Second Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou 310058, China
| | - Zhenyu Zeng
- Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, Alibaba-Zhejiang University Joint Research Center of Future Digital Healthcare, Hangzhou 330110, China
| | - Bing Zhang
- Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, Alibaba-Zhejiang University Joint Research Center of Future Digital Healthcare, Hangzhou 330110, China
| | - Zhaorong Li
- Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, Alibaba-Zhejiang University Joint Research Center of Future Digital Healthcare, Hangzhou 330110, China
| | - Yunqing Qiu
- State Key Laboratory for Diagnosis and Treatment of Infectious Disease, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Zhejiang Provincial Key Laboratory for Drug Clinical Research and Evaluation, The First Affiliated Hospital, Zhejiang University, 79 QingChun Road, Hangzhou, Zhejiang 310000, China
| | - Haibin Dai
- College of Pharmaceutical Sciences, The Second Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou 310058, China
| | - Yuzong Chen
- State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Biology, The Graduate School at Shenzhen, Tsinghua University, Shenzhen 518055, China.,Qian Xuesen Collaborative Research Center of Astrochemistry and Space Life Sciences, Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China
| | - Feng Zhu
- College of Pharmaceutical Sciences, The Second Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou 310058, China.,Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, Alibaba-Zhejiang University Joint Research Center of Future Digital Healthcare, Hangzhou 330110, China
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Boosted Sine Cosine Algorithm with Application to Medical Diagnosis. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:6215574. [PMID: 35785140 PMCID: PMC9242811 DOI: 10.1155/2022/6215574] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/24/2022] [Revised: 05/19/2022] [Accepted: 05/26/2022] [Indexed: 01/09/2023]
Abstract
The sine cosine algorithm (SCA) was proposed for solving optimization tasks, of which the way to obtain the optimal solution is mainly through the continuous iteration of the sine and cosine update formulas. However, SCA also faces low population diversity and stagnation of locally optimal solutions. Hence, we try to eliminate these problems by proposing an enhanced version of SCA, named ESCA_PSO. ESCA_PSO is proposed based on hybrid SCA and particle swarm optimization (PSO) by incorporating multiple mutation strategies into the original SCA_PSO. To validate the effect of ESCA_PSO in handling global optimization problems, ESCA_PSO was compared with quality algorithms on various types of benchmark functions. In addition, the proposed ESCA_PSO was employed to tune the best parameters of support vector machines for dealing with medical diagnosis tasks. The results prove the efficiency of the proposed algorithms in solving optimization problems.
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Tool for Predicting College Student Career Decisions: An Enhanced Support Vector Machine Framework. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12094776] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The goal of this research is to offer an effective intelligent model for forecasting college students’ career decisions in order to give a useful reference for career decisions and policy formation by relevant departments. The suggested prediction model is mainly based on a support vector machine (SVM) that has been modified using an enhanced butterfly optimization approach with a communication mechanism and Gaussian bare-bones mechanism (CBBOA). To get a better set of parameters and feature subsets, first, we added a communication mechanism to BOA to improve its global search capability and balance exploration and exploitation trends. Then, Gaussian bare-bones was added to increase the population diversity of BOA and its ability to jump out of the local optimum. The optimal SVM model (CBBOA-SVM) was then developed to predict the career decisions of college students based on the obtained parameters and feature subsets that are already optimized by CBBOA. In order to verify the effectiveness of CBBOA, we compared it with some advanced algorithms on all benchmark functions of CEC2014. Simulation results demonstrated that the performance of CBBOA is indeed more comprehensive. Meanwhile, comparisons between CBBOA-SVM and other machine learning approaches for career decision prediction were carried out, and the findings demonstrate that the provided CBBOA-SVM has better classification and more stable performance. As a result, it is plausible to conclude that the CBBOA-SVM is capable of being an effective tool for predicting college student career decisions.
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Yu R, Tian Y, Gao J, Liu Z, Wei X, Jiang H, Huang Y, Li X. Feature discretization-based deep clustering for thyroid ultrasound image feature extraction. Comput Biol Med 2022; 146:105600. [DOI: 10.1016/j.compbiomed.2022.105600] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2022] [Revised: 04/28/2022] [Accepted: 05/06/2022] [Indexed: 02/08/2023]
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An efficient rotational direction heap-based optimization with orthogonal structure for medical diagnosis. Comput Biol Med 2022; 146:105563. [PMID: 35551010 DOI: 10.1016/j.compbiomed.2022.105563] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 04/24/2022] [Accepted: 04/24/2022] [Indexed: 12/17/2022]
Abstract
The heap-based optimizer (HBO) is an optimization method proposed in recent years that may face local stagnation problems and show slow convergence speed due to the lack of detailed analysis of optimal solutions and a comprehensive search. Therefore, to mitigate these drawbacks and strengthen the performance of the algorithm in the field of medical diagnosis, a new MGOHBO method is proposed by introducing the modified Rosenbrock's rotational direction method (MRM), an operator from the grey wolf optimizer (GWM), and an orthogonal learning strategy (OL). The MGOHBO is compared with eleven famous and improved optimizers on IEEE CEC 2017. The results on benchmark functions indicate that the boosted MGOHBO has several significant advantages in terms of convergence accuracy and speed of the process. Additionally, this article analyzed the diversity and balance of MGOHBO in detail. Finally, the proposed MGOHBO algorithm is utilized to optimize the kernel extreme learning machines (KELM), and a new MGOHBO-KELM is proposed. To validate the performance of MGOHBO-KELM, seven disease diagnostic questions were introduced for testing in this work. In contrast to advanced models such as HBO-KELM and BP, it can be concluded that the MGOHBO-KELM model can achieve optimal results, which also proves that it has practical significance in solving medical diagnosis problems.
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Xia J, Wang Z, Yang D, Li R, Liang G, Chen H, Heidari AA, Turabieh H, Mafarja M, Pan Z. Performance optimization of support vector machine with oppositional grasshopper optimization for acute appendicitis diagnosis. Comput Biol Med 2022; 143:105206. [PMID: 35101730 DOI: 10.1016/j.compbiomed.2021.105206] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 12/27/2021] [Accepted: 12/30/2021] [Indexed: 12/13/2022]
Abstract
Preoperative differentiation of complicated and uncomplicated appendicitis is challenging. The research goal was to construct a new intelligent diagnostic rule that is accurate, fast, noninvasive, and cost-effective, distinguishing between complicated and uncomplicated appendicitis. Overall, 298 patients with acute appendicitis from the Wenzhou Central Hospital were recruited, and information on their demographic characteristics, clinical findings, and laboratory data was retrospectively reviewed and applied in this study. First, the most significant variables, including C-reactive protein (CRP), heart rate, body temperature, and neutrophils discriminating complicated from uncomplicated appendicitis, were identified using random forest analysis. Second, an improved grasshopper optimization algorithm-based support vector machine was used to construct the diagnostic model to discriminate complicated appendicitis (CAP) from uncomplicated appendicitis (UAP). The resultant optimal model can produce an average of 83.56% accuracy, 81.71% sensitivity, 85.33% specificity, and 0.6732 Matthews correlation coefficients. Based on existing routinely available markers, the proposed intelligent diagnosis model is highly reliable. Thus, the model can potentially be used to assist doctors in making correct clinical decisions.
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Affiliation(s)
- Jianfu Xia
- Department of General Surgery, The Second Affiliated Hospital of Shanghai University (Wenzhou Central Hospital), Wenzhou, Zhejiang, 325000, China.
| | - Zhifei Wang
- Department of Hepatobiliary, Pancreatic and Minimally Invasive Surgery, Zhejiang Provincial People's Hospital, Hangzhou, 310014, China.
| | - Daqing Yang
- Department of General Surgery, The Second Affiliated Hospital of Shanghai University (Wenzhou Central Hospital), Wenzhou, Zhejiang, 325000, China.
| | - Rizeng Li
- Department of General Surgery, The Second Affiliated Hospital of Shanghai University (Wenzhou Central Hospital), Wenzhou, Zhejiang, 325000, China.
| | - Guoxi Liang
- Department of Information Technology, Wenzhou Polytechnic, Wenzhou, 325035, China.
| | - Huiling Chen
- Department of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, 325035, China.
| | - Ali Asghar Heidari
- Department of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, 325035, China.
| | - Hamza Turabieh
- Department of Information Technology, College of Computers and Information Technology, Taif University, P.O. Box 11099, Taif, 21944, Taif, Saudi Arabia.
| | - Majdi Mafarja
- Department of Computer Science, Birzeit University, Birzeit, 72439, Palestine.
| | - Zhifang Pan
- The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, PR China.
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Chen Y, Yang XH, Wei Z, Heidari AA, Zheng N, Li Z, Chen H, Hu H, Zhou Q, Guan Q. Generative Adversarial Networks in Medical Image augmentation: A review. Comput Biol Med 2022; 144:105382. [PMID: 35276550 DOI: 10.1016/j.compbiomed.2022.105382] [Citation(s) in RCA: 98] [Impact Index Per Article: 32.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Revised: 02/25/2022] [Accepted: 03/02/2022] [Indexed: 12/31/2022]
Abstract
OBJECT With the development of deep learning, the number of training samples for medical image-based diagnosis and treatment models is increasing. Generative Adversarial Networks (GANs) have attracted attention in medical image processing due to their excellent image generation capabilities and have been widely used in data augmentation. In this paper, a comprehensive and systematic review and analysis of medical image augmentation work are carried out, and its research status and development prospects are reviewed. METHOD This paper reviews 105 medical image augmentation related papers, which mainly collected by ELSEVIER, IEEE Xplore, and Springer from 2018 to 2021. We counted these papers according to the parts of the organs corresponding to the images, and sorted out the medical image datasets that appeared in them, the loss function in model training, and the quantitative evaluation metrics of image augmentation. At the same time, we briefly introduce the literature collected in three journals and three conferences that have received attention in medical image processing. RESULT First, we summarize the advantages of various augmentation models, loss functions, and evaluation metrics. Researchers can use this information as a reference when designing augmentation tasks. Second, we explore the relationship between augmented models and the amount of the training set, and tease out the role that augmented models may play when the quality of the training set is limited. Third, the statistical number of papers shows that the development momentum of this research field remains strong. Furthermore, we discuss the existing limitations of this type of model and suggest possible research directions. CONCLUSION We discuss GAN-based medical image augmentation work in detail. This method effectively alleviates the challenge of limited training samples for medical image diagnosis and treatment models. It is hoped that this review will benefit researchers interested in this field.
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Affiliation(s)
- Yizhou Chen
- College of Computer Science and Technology, Zhejiang University of Technology, Hangzhou, China.
| | - Xu-Hua Yang
- College of Computer Science and Technology, Zhejiang University of Technology, Hangzhou, China.
| | - Zihan Wei
- College of Computer Science and Technology, Zhejiang University of Technology, Hangzhou, China.
| | - Ali Asghar Heidari
- School of Surveying and Geospatial Engineering, College of Engineering, University of Tehran, Tehran, Iran; Department of Computer Science, School of Computing, National University of Singapore, Singapore, Singapore.
| | - Nenggan Zheng
- Qiushi Academy for Advanced Studies, Zhejiang University, Hangzhou, Zhejiang, China.
| | - Zhicheng Li
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
| | - Huiling Chen
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, Zhejiang, 325035, China.
| | - Haigen Hu
- College of Computer Science and Technology, Zhejiang University of Technology, Hangzhou, China.
| | - Qianwei Zhou
- College of Computer Science and Technology, Zhejiang University of Technology, Hangzhou, China.
| | - Qiu Guan
- College of Computer Science and Technology, Zhejiang University of Technology, Hangzhou, China.
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Su H, Zhao D, Yu F, Heidari AA, Zhang Y, Chen H, Li C, Pan J, Quan S. Horizontal and vertical search artificial bee colony for image segmentation of COVID-19 X-ray images. Comput Biol Med 2022; 142:105181. [PMID: 35016099 PMCID: PMC9749108 DOI: 10.1016/j.compbiomed.2021.105181] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2021] [Revised: 12/20/2021] [Accepted: 12/24/2021] [Indexed: 11/03/2022]
Abstract
The artificial bee colony algorithm (ABC) has been successfully applied to various optimization problems, but the algorithm still suffers from slow convergence and poor quality of optimal solutions in the optimization process. Therefore, in this paper, an improved ABC (CCABC) based on a horizontal search mechanism and a vertical search mechanism is proposed to improve the algorithm's performance. In addition, this paper also presents a multilevel thresholding image segmentation (MTIS) method based on CCABC to enhance the effectiveness of the multilevel thresholding image segmentation method. To verify the performance of the proposed CCABC algorithm and the performance of the improved image segmentation method. First, this paper demonstrates the performance of the CCABC algorithm itself by comparing CCABC with 15 algorithms of the same type using 30 benchmark functions. Then, this paper uses the improved multi-threshold segmentation method for the segmentation of COVID-19 X-ray images and compares it with other similar plans in detail. Finally, this paper confirms that the incorporation of CCABC in MTIS is very effective by analyzing appropriate evaluation criteria and affirms that the new MTIS method has a strong segmentation performance.
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Affiliation(s)
- Hang Su
- College of Computer Science and Technology, Changchun Normal University, Changchun, Jilin, 130032, China.
| | - Dong Zhao
- College of Computer Science and Technology, Changchun Normal University, Changchun, Jilin, 130032, China.
| | - Fanhua Yu
- College of Computer Science and Technology, Changchun Normal University, Changchun, Jilin, 130032, China.
| | - Ali Asghar Heidari
- School of Surveying and Geospatial Engineering, College of Engineering, University of Tehran, Tehran, Iran.
| | - Yu Zhang
- College of Computer Science and Technology, Changchun Normal University, Changchun, Jilin, 130032, China.
| | - Huiling Chen
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, Zhejiang, 325035, China.
| | - Chengye Li
- Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, China.
| | - Jingye Pan
- Department of Intensive Care Unit, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, 325000, China; Key Laboratory of Intelligent Treatment and Life Support for Critical Diseases of Zhejiang Provincial, Wenzhou, Zhejiang, 325000, China; Wenzhou Key Laboratory of Critical Care and Artificial Intelligence, Wenzhou, Zhejiang, 325000, China.
| | - Shichao Quan
- Department of General Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, 325000, China; Department of Big Data in Health Science, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, 325000, China; Zhejiang Engineering Research Center for Hospital Emergency and Process Digitization, Wenzhou, Zhejiang, 325000, China.
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Individual Disturbance and Attraction Repulsion Strategy Enhanced Seagull Optimization for Engineering Design. MATHEMATICS 2022. [DOI: 10.3390/math10020276] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The seagull optimization algorithm (SOA) is a novel swarm intelligence algorithm proposed in recent years. The algorithm has some defects in the search process. To overcome the problem of poor convergence accuracy and easy to fall into local optimality of seagull optimization algorithm, this paper proposed a new variant SOA based on individual disturbance (ID) and attraction-repulsion (AR) strategy, called IDARSOA, which employed ID to enhance the ability to jump out of local optimum and adopted AR to increase the diversity of population and make the exploration of solution space more efficient. The effectiveness of the IDARSOA has been verified using representative comprehensive benchmark functions and six practical engineering optimization problems. The experimental results show that the proposed IDARSOA has the advantages of better convergence accuracy and a strong optimization ability than the original SOA.
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Syah R, Bateni A, Valizadeh K, Elveny M, Shaeban Jahanian M, Ramdan D, Davarpanah A. Computational fluid dynamic simulations to improve heat transfer in shell tube heat exchangers. INTERNATIONAL JOURNAL OF CHEMICAL REACTOR ENGINEERING 2021. [DOI: 10.1515/ijcre-2021-0145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Improving the thermal efficiency of shell-tube heat exchangers is essential in industries related to these heat exchangers. Installing heat transfer boosters on the side of the converter tube is one of the most appropriate ways to enhance heat transfer and increase the efficiency of this equipment. In this article, spring turbulence is studied using the computational fluid dynamics tool. The displacement heat transfer coefficient and the friction coefficient were selected as the primary target parameters, and the effect of using spring tabulators on them was investigated. The ratio of torsion step length to turbulence pipe length, wire diameter to pipe diameter ratio, and flow regime was studied as the main simulation variables, and the simulation results were compared with a simple pipe. The effect of water-acting fluid, R22, and copper Nanofluid on tubes containing turbidity was compared and investigated. This study showed that due to the pressure drop, the pipe with a torsional pitch to pipe length ratio of 0.17, a turbulent diameter to pipe diameter ratio of 0.15, and a Reynolds number of 50,000 with fluid R22 has the best performance for heat transfer.
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Affiliation(s)
- Rahmad Syah
- Data Science & Computational Intelligence Research Group , Universitas Medan Area , Medan , Indonesia
| | - Amir Bateni
- Department of Chemical Engineering , Arak Branch, Islamic Azad University , Arak , Iran
| | - Kamran Valizadeh
- Department of Chemical Engineering , Science and Research Branch, Islamic Azad University , Tehran , Iran
| | - Marischa Elveny
- Data Science & Computational Intelligence Research Group, Universitas Sumatera Utara , Medan , Indonesia
| | - Mehdi Shaeban Jahanian
- Department of Chemical Engineering , Tehran South Branch, Islamic Azad University , Tehran , Iran
| | - Dadan Ramdan
- Data Science & Computational Intelligence Research Group , Universitas Medan Area , Medan , Indonesia
| | - Afshin Davarpanah
- Department of Petroleum Engineering , Science and Research Branch, Islamic Azad University , Tehran , Iran
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Valizadeh A, Shariatee M. The Progress of Medical Image Semantic Segmentation Methods for Application in COVID-19 Detection. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2021; 2021:7265644. [PMID: 34840563 PMCID: PMC8611358 DOI: 10.1155/2021/7265644] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Accepted: 10/18/2021] [Indexed: 11/17/2022]
Abstract
Image medical semantic segmentation has been employed in various areas, including medical imaging, computer vision, and intelligent transportation. In this study, the method of semantic segmenting images is split into two sections: the method of the deep neural network and previous traditional method. The traditional method and the published dataset for segmentation are reviewed in the first step. The presented aspects, including all-convolution network, sampling methods, FCN connector with CRF methods, extended convolutional neural network methods, improvements in network structure, pyramid methods, multistage and multifeature methods, supervised methods, semiregulatory methods, and nonregulatory methods, are then thoroughly explored in current methods based on the deep neural network. Finally, a general conclusion on the use of developed advances based on deep neural network concepts in semantic segmentation is presented.
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Affiliation(s)
- Amin Valizadeh
- Department of Mechanical Engineering, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Morteza Shariatee
- Department of Mechanical Engineering, Iowa State University, Ames, IA, USA
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Garcia-Zamalloa A, Vicente D, Arnay R, Arrospide A, Taboada J, Castilla-Rodríguez I, Aguirre U, Múgica N, Aldama L, Aguinagalde B, Jimenez M, Bikuña E, Basauri MB, Alonso M, Perez-Trallero E. Diagnostic accuracy of adenosine deaminase for pleural tuberculosis in a low prevalence setting: A machine learning approach within a 7-year prospective multi-center study. PLoS One 2021; 16:e0259203. [PMID: 34735491 PMCID: PMC8568264 DOI: 10.1371/journal.pone.0259203] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Accepted: 10/14/2021] [Indexed: 11/17/2022] Open
Abstract
OBJECTIVE To analyze the performance of adenosine deaminase in pleural fluid combined with other parameters routinely measured in clinical practice and assisted by machine learning algorithms for the diagnosis of pleural tuberculosis in a low prevalence setting, and secondly, to identify effusions that are non-tuberculous and most likely malignant. PATIENTS AND METHODS We prospectively analyzed 230 consecutive patients diagnosed with lymphocytic exudative pleural effusion from March 2013 to June 2020. Diagnosis according to the composite reference standard was achieved in all cases. Pre-test probability of pleural tuberculosis was 3.8% throughout the study period. Parameters included were: levels of adenosine deaminase, pH, glucose, proteins, and lactate dehydrogenase, red and white cell counts and lymphocyte percentage in pleural fluid, as well as age. We tested six different machine learning-based classifiers to categorize the patients. Two different classifications were performed: a) tuberculous/non-tuberculous and b) tuberculous/malignant/other. RESULTS Out of a total of 230 patients with pleural effusion included in the study, 124 were diagnosed with malignant effusion and 44 with pleural tuberculosis, while 62 were given other diagnoses. In the tuberculous/non-tuberculous classification, and taking into account the validation predictions, the support vector machine yielded the best result: an AUC of 0.98, accuracy of 97%, sensitivity of 91%, and specificity of 98%, whilst in the tuberculous/malignant/other classification, this type of classifier yielded an overall accuracy of 80%. With this three-class classifier, the same sensitivity and specificity was achieved in the tuberculous/other classification, but it also allowed the correct classification of 90% of malignant cases. CONCLUSION The level of adenosine deaminase in pleural fluid together with cell count, other routine biochemical parameters and age, combined with a machine-learning approach, is suitable for the diagnosis of pleural tuberculosis in a low prevalence scenario. Secondly, non-tuberculous effusions that are suspected to be malignant may also be identified with adequate accuracy.
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Affiliation(s)
- Alberto Garcia-Zamalloa
- Internal Medicine Service, Osakidetza/Basque Health Service, Mendaro Hospital, Gipuzkoa, Spain.,Mycobacterial Infection Study Group (GEIM), From the Spanish Infectious Diseases Society, Spain
| | - Diego Vicente
- Microbiology Department, Respiratory Infection and Antimicrobial Resistance Group. Osakidetza/Basque Health Service, Biodonostia Health Research Institute, Donostia University Hospital, Gipuzkoa, Spain.,Faculty of Medicine, University of the Basque Country, UPV/EHU, Gipuzkoa, Donostia, Spain
| | - Rafael Arnay
- Departamento de Ingeniería Informática y de Sistemas, Universidad de La Laguna, Santa Cruz de Tenerife, Spain
| | - Arantzazu Arrospide
- Gipuzkoa Primary Care-Integrated Health Organisation Research Unit, Osakidetza/Basque Health Service, Debagoiena Integrated Health Organisation, Alto Deba Hospital, Arrasate-Mondragon, Spain.,Epidemiology and Public Health Area, Economic Evaluation of Chronic Diseases Research Group, Biodonostia Health Research Institute, Donostia, Spain.,Kronikgune Institute for Health Services Research, Bizkaia/Barakaldo, Spain.,Health Services Research on Chronic Patients Network (REDISSEC), Spain
| | - Jorge Taboada
- Preventive Medicine and Western Gipuzkoa Clinical Research Unit, Osakidetza/Basque Health Service, Mendaro Hospital, Gipuzkoa, Spain
| | - Iván Castilla-Rodríguez
- Departamento de Ingeniería Informática y de Sistemas, Universidad de La Laguna, Santa Cruz de Tenerife, Spain.,Health Services Research on Chronic Patients Network (REDISSEC), Spain
| | - Urko Aguirre
- Kronikgune Institute for Health Services Research, Bizkaia/Barakaldo, Spain.,Health Services Research on Chronic Patients Network (REDISSEC), Spain.,Osakidetza/Basque Health Service, Research Unit, Galdakao University Hospital, Bizkaia, Spain
| | - Nekane Múgica
- Pneumology Service, Osakidetza/Basque Health Service, Donostia University Hospital, Gipuzkoa. Spain
| | - Ladislao Aldama
- Pneumology Service, Osakidetza/Basque Health Service, Donostia University Hospital, Gipuzkoa. Spain
| | - Borja Aguinagalde
- Thoracic Surgery Service, Osakidetza/Basque Health Service, Donostia University Hospital, Gipuzkoa, Spain
| | - Montserrat Jimenez
- Epidemiological Surveillance Unit, Health Department, Basque Government, Gipuzkoa, Spain
| | - Edurne Bikuña
- Epidemiological Surveillance Unit, Health Department, Basque Government, Gipuzkoa, Spain
| | - Miren Begoña Basauri
- Biochemistry Laboratory, Osakidetza/Basque Health Service, Mendaro Hospital, Gipuzkoa, Spain
| | - Marta Alonso
- Microbiology Department, Respiratory Infection and Antimicrobial Resistance Group. Osakidetza/Basque Health Service, Biodonostia Health Research Institute, Donostia University Hospital, Gipuzkoa, Spain
| | - Emilio Perez-Trallero
- Microbiology Department, Respiratory Infection and Antimicrobial Resistance Group. Osakidetza/Basque Health Service, Biodonostia Health Research Institute, Donostia University Hospital, Gipuzkoa, Spain
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Ouchani M, Gharibzadeh S, Jamshidi M, Amini M. A Review of Methods of Diagnosis and Complexity Analysis of Alzheimer's Disease Using EEG Signals. BIOMED RESEARCH INTERNATIONAL 2021; 2021:5425569. [PMID: 34746303 PMCID: PMC8566072 DOI: 10.1155/2021/5425569] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Revised: 06/20/2021] [Accepted: 10/18/2021] [Indexed: 01/27/2023]
Abstract
This study will concentrate on recent research on EEG signals for Alzheimer's diagnosis, identifying and comparing key steps of EEG-based Alzheimer's disease (AD) detection, such as EEG signal acquisition, preprocessing function extraction, and classification methods. Furthermore, highlighting general approaches, variations, and agreement in the use of EEG identified shortcomings and guidelines for multiple experimental stages ranging from demographic characteristics to outcomes monitoring for future research. Two main targets have been defined based on the article's purpose: (1) discriminative (or detection), i.e., look for differences in EEG-based features across groups, such as MCI, moderate Alzheimer's disease, extreme Alzheimer's disease, other forms of dementia, and stable normal elderly controls; and (2) progression determination, i.e., look for correlations between EEG-based features and clinical markers linked to MCI-to-AD conversion and Alzheimer's disease intensity progression. Limitations mentioned in the reviewed papers were also gathered and explored in this study, with the goal of gaining a better understanding of the problems that need to be addressed in order to advance the use of EEG in Alzheimer's disease science.
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Affiliation(s)
- Mahshad Ouchani
- Institute for Cognitive and Brain Sciences, Shahid Beheshti University, Tehran, Iran
| | - Shahriar Gharibzadeh
- Institute for Cognitive and Brain Sciences, Shahid Beheshti University, Tehran, Iran
| | - Mahdieh Jamshidi
- Institute for Cognitive and Brain Sciences, Shahid Beheshti University, Tehran, Iran
| | - Morteza Amini
- Shahid Beheshti University, Tehran, Iran
- Institute for Cognitive Science Studies (ICSS), Tehran, Iran
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37
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Tribological characterization of graphene oxide by laser ablation as a grease additive. INTERNATIONAL JOURNAL OF CHEMICAL REACTOR ENGINEERING 2021. [DOI: 10.1515/ijcre-2021-0168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
In this work, the structural and tribological behavior of graphene oxide samples as a grease addi-tive was studied. By Nd:YAG laser ablation system and using graphite target at two laser energy of 0.3 W and 0.6 W, graphene oxide (GO) samples were successfully prepared. GO samples were characterized using Raman spectroscopy, field emission scanning electron microscopy (FESEM), Fourier transform infrared spectroscopy (FTIR) and energy dispersive X-ray spectroscopy (EDAX). Also, tribological behaviors of the lubricating grease, with and without the graphene oxide in grease, by the pin-on disc tribometer were determined. The Raman spectroscopy measurements showed D and G bound, which confirmed the successful synthesis of the graphene oxide sample and also the I
D/I
G, decreased by increasing laser power due to decreasing disorder in graphene oxide structure. FESEM images show that by ablating carbon atoms from graphite target in water, particles assemble to form a GO micro-cluster due to thermodynamically agglomeration with average size of about 3–4 µm, which the size of them depends on the laser pulse energy. Based on FTIR and EDAX analysis, GO sample which prepared at lower laser energy possessed the highest content of oxygen and oxygen functional groups. In addition, the results of tribological behavior showed that the friction-reducing ability and antiwear property of the grease can be improved effectively with the addition of GO. However, it is revealed that the small size GO has a better lubricating performance and therefore cluster size appears to play a role in the degree of wear protection due to its impact on the physical and chemical properties. The results of this study indicate that the GO sample prepared at lower laser energy (0.3 W) has a smaller size and the higher the oxygen content therefore provide better friction-reducing and anti-wear effect. Also, additive of graphene oxide in lubricating grease decreases coefficient of friction as well as wear. Based on our results, the application of GO as an additive in grease leads to increased performance of the lubricated kinematic machine.
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Performance optimization of differential evolution with slime mould algorithm for multilevel breast cancer image segmentation. Comput Biol Med 2021; 138:104910. [PMID: 34638022 DOI: 10.1016/j.compbiomed.2021.104910] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 09/23/2021] [Accepted: 09/24/2021] [Indexed: 01/11/2023]
Abstract
Breast cancer is one of the most dangerous diseases for women's health, and it is imperative to provide the necessary diagnostic assistance for it. The medical image processing technology is one of the most critical of all complementary diagnostic technologies. Image segmentation is the core step of image processing, where multilevel image segmentation is considered one of the most efficient and straightforward methods. Many multilevel image segmentation methods based on evolutionary and population-based methods have been proposed in recent years, but many have the fatal weakness of poor convergence accuracy and the tendency to fall into local optimum. Therefore, to overcome these weaknesses, this paper proposes a modified differential evolution (MDE) algorithm with a vision based on the slime mould foraging behavior, where the recently proposed slime mould algorithm (SMA) inspires it. Besides, to obtain high-quality breast cancer image segmentation results, this paper also develops an excellent MDE-based multilevel image segmentation model, the core of which is based on non-local means 2D histogram and 2D Kapur's entropy. To effectively validate the performance of the proposed method, a comparison experiment between MDE and its similar algorithms was first carried out on IEEE CEC 2014. Then, an initial validation of the MDE-based multilevel image segmentation model was performed by utilizing a reference image set. Finally, the MDE-based multilevel image segmentation model was compared with peers using breast invasive ductal carcinoma images. A series of experimental results have proved that MDE is an evolutionary algorithm with high convergence accuracy and the ability to jump out of the local optimum, as well as effectively demonstrated that the developed model is a high-quality segmentation method that can provide practical support for further research of breast invasive ductal carcinoma pathological image processing.
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39
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Pourasad Y, Zarouri E, Salemizadeh Parizi M, Salih Mohammed A. Presentation of Novel Architecture for Diagnosis and Identifying Breast Cancer Location Based on Ultrasound Images Using Machine Learning. Diagnostics (Basel) 2021; 11:1870. [PMID: 34679568 PMCID: PMC8534593 DOI: 10.3390/diagnostics11101870] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 10/02/2021] [Accepted: 10/03/2021] [Indexed: 12/14/2022] Open
Abstract
Breast cancer is one of the main causes of death among women worldwide. Early detection of this disease helps reduce the number of premature deaths. This research aims to design a method for identifying and diagnosing breast tumors based on ultrasound images. For this purpose, six techniques have been performed to detect and segment ultrasound images. Features of images are extracted using the fractal method. Moreover, k-nearest neighbor, support vector machine, decision tree, and Naïve Bayes classification techniques are used to classify images. Then, the convolutional neural network (CNN) architecture is designed to classify breast cancer based on ultrasound images directly. The presented model obtains the accuracy of the training set to 99.8%. Regarding the test results, this diagnosis validation is associated with 88.5% sensitivity. Based on the findings of this study, it can be concluded that the proposed high-potential CNN algorithm can be used to diagnose breast cancer from ultrasound images. The second presented CNN model can identify the original location of the tumor. The results show 92% of the images in the high-performance region with an AUC above 0.6. The proposed model can identify the tumor's location and volume by morphological operations as a post-processing algorithm. These findings can also be used to monitor patients and prevent the growth of the infected area.
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Affiliation(s)
- Yaghoub Pourasad
- Department of Electrical Engineering, Urmia University of Technology (UUT), Urmia 57166-93188, Iran
| | - Esmaeil Zarouri
- School of Electrical Engineering, Electronic Engineering, Iran University of Science and Technology—IUST, Tehran 16846-13114, Iran;
| | | | - Amin Salih Mohammed
- Department of Computer Engineering, College of Engineering and Computer Science, Lebanese French University, Erbil 44001, Iraq;
- Department of Software and Informatics Engineering, Salahaddin University, Erbil 44002, Iraq
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40
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Qiao Z, Shan W, Jiang N, Heidari AA, Chen H, Teng Y, Turabieh H, Mafarja M. Gaussian bare‐bones gradient‐based optimization: Towards mitigating the performance concerns. INT J INTELL SYST 2021. [DOI: 10.1002/int.22658] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Zenglin Qiao
- School of Emergency Management, Institute of Disaster Prevention Langfang China
| | - Weifeng Shan
- School of Emergency Management, Institute of Disaster Prevention Langfang China
- Institute of Geophysics, China Earthquake Administration Beijing China
| | - Nan Jiang
- College of Information Engineering, East China Jiaotong University Nanchang Jiangxi China
| | - Ali Asghar Heidari
- Department of Computer Science and Artificial Intelligence Wenzhou University Wenzhou China
| | - Huiling Chen
- Department of Computer Science and Artificial Intelligence Wenzhou University Wenzhou China
| | - Yuntian Teng
- Institute of Geophysics, China Earthquake Administration Beijing China
| | - Hamza Turabieh
- Department of Information Technology College of Computers and Information Technology, Taif University Taif Saudi Arabia
| | - Majdi Mafarja
- Department of Computer Science Birzeit University West Bank Palestine
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41
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Incorporation of Bi2O3 Residuals with Metallic Bi as High Performance Electrocatalyst toward Hydrogen Evolution Reaction. Catalysts 2021. [DOI: 10.3390/catal11091099] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
Nanostructured Bismuth-based materials are promising electrodes for highly efficient electrochemical reduction processes such as hydrogen evolution reaction (HER). In this work, a novel sort of nanocomposite made up of partially reduced Bi2O3 into metallic Bi anchored on a 3D network of Ni-foam as a high-performance catalyst for electrochemical hydrogen reduction. The application of the hybrid material for HER is shown. The high catalytic activity of the fabricated electrocatalyst arises from the co-operative effect of Bi/Bi2O3 and Ni-foam which provides a highly effective surface area combined with the highly porous structure of Ni-foam for efficient charge and mass transport. The advantages of the electrode for the electrochemical reduction processes such as high current density, low overpotential, and high stability of the electrode are revealed. An overall comparison of our as-prepared electrocatalyst with recently reported works on related work is done.
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42
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Forecasting Daily Electricity Price by Hybrid Model of Fractional Wavelet Transform, Feature Selection, Support Vector Machine and Optimization Algorithm. ELECTRONICS 2021. [DOI: 10.3390/electronics10182214] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
This paper proposes a novel hybrid forecasting model with three main parts to accurately forecast daily electricity prices. In the first part, where data are divided into high- and low-frequency data using the fractional wavelet transform, the best data with the highest relevancy are selected, using a feature selection algorithm. The second part is based on a nonlinear support vector network and auto-regressive integrated moving average (ARIMA) method for better training the previous values of electricity prices. The third part optimally adjusts the proposed support vector machine parameters with an error-base objective function, using the improved grey wolf and particle swarm optimization. The proposed method is applied to forecast electricity markets, and the results obtained are analyzed with the help of the criteria based on the forecast errors. The results demonstrate the high accuracy in the MAPE index of forecasting the electricity price, which is about 91% as compared to other forecasting methods.
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43
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Towards Precision Fertilization: Multi-Strategy Grey Wolf Optimizer Based Model Evaluation and Yield Estimation. ELECTRONICS 2021. [DOI: 10.3390/electronics10182183] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Precision fertilization is a major constraint in consistently balancing the contradiction between land resources, ecological environment, and population increase. Even more, it is a popular technology used to maintain sustainable development. Nitrogen (N), phosphorus (P), and potassium (K) are the main sources of nutrient income on farmland. The traditional fertilizer effect function cannot meet the conditional agrochemical theory’s conditional extremes because the soil is influenced by various factors and statistical errors in harvest and yield. In order to find more accurate scientific ratios, it has been proposed a multi-strategy-based grey wolf optimization algorithm (SLEGWO) to solve the fertilizer effect function in this paper, using the “3414” experimental field design scheme, taking the experimental field in Nongan County, Jilin Province as the experimental site to obtain experimental data, and using the residuals of the ternary fertilizer effect function of Nitrogen, phosphorus, and potassium as the target function. The experimental results showed that the SLEGWO algorithm could improve the fitting degree of the fertilizer effect equation and then reasonably predict the accurate fertilizer application ratio and improve the yield. It is a more accurate precision fertilization modeling method. It provides a new means to solve the problem of precision fertilizer and soil testing and fertilization.
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44
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The Economic Evaluation of Methanol and Propylene Production from Natural Gas at Petrochemical Industries in Iran. SUSTAINABILITY 2021. [DOI: 10.3390/su13179990] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
This investigation scrutinizes the economic features and potential of propylene and methanol production from natural gas in Iran because greenhouse gas emissions released by natural gas-based production processes are lower than coal-based ones. Considering the advantage of Iran’s access to natural gas, this study evaluates and compares the economic value of different plans to complete the value chain of propylene production from natural gas and methanol in the form of four units based on three price scenarios, namely, optimistic, realistic, and pessimistic, using the COMFAR III software. Iran has been ranked as the second most prosperous country globally based on its natural gas reserves. Methanol and propylene production processes via natural gas will lower the release of greenhouse gas. This, increasing the investment and accelerating the development of methanol and propylene production units driven by natural gas will lead the world to a low emission future compared to coal-based plants. The economic evaluation and sensitivity analysis results revealed that the conversion of methanol to propylene is more attractive for investment than the sale of crude methanol. The development of methanol to propylene units is more economical than constructing a new gas to propylene unit because of the lower investment costs.
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45
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Predicting the Degree of Dissolved Oxygen Using Three Types of Multi-Layer Perceptron-Based Artificial Neural Networks. SUSTAINABILITY 2021. [DOI: 10.3390/su13179898] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Predicting the level of dissolved oxygen (DO) is an important issue ensuring the sustainability of the inhabitants of a river. A prediction model can predict the DO level using a historical dataset with regard to water temperature, pH, and specific conductance for a given river. The model can be built using sophisticated computational procedures such as multi-layer perceptron-based artificial neural networks. Different types of networks can be constructed for this purpose. In this study, the authors constructed three networks, namely, multi-verse optimizer (MVO), black hole algorithm (BHA), and shuffled complex evolution (SCE). The networks were trained using the datasets collected from the Klamath River Station, Oregon, USA, for the period 2015–2018. We found that the trained networks could predict the DO level of 2019. We also found that both BHA- and SCE-based networks could predict the level of DO using a relatively simple configuration compared to that of MVO. From the viewpoints of absolute errors and Pearson’s correlation coefficient, MVO- and SCE-based networks performed better than BHA-based networks. In synopsis, the authors recommend MVO- and MLP-based artificial neural networks for predicting the DO level of a river.
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46
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Liu L, Zhao D, Yu F, Heidari AA, Li C, Ouyang J, Chen H, Mafarja M, Turabieh H, Pan J. Ant colony optimization with Cauchy and greedy Levy mutations for multilevel COVID 19 X-ray image segmentation. Comput Biol Med 2021; 136:104609. [PMID: 34293587 PMCID: PMC8254401 DOI: 10.1016/j.compbiomed.2021.104609] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 06/22/2021] [Accepted: 06/22/2021] [Indexed: 01/22/2023]
Abstract
This paper focuses on the study of multilevel COVID-19 X-ray image segmentation based on swarm intelligence optimization to improve the diagnostic level of COVID-19. We present a new ant colony optimization with the Cauchy mutation and the greedy Levy mutation, termed CLACO, for continuous domains. Specifically, the Cauchy mutation is applied to the end phase of ant foraging in CLACO to enhance its searchability and to boost its convergence rate. The greedy Levy mutation is applied to the optimal ant individuals to confer an improved ability to jump out of the local optimum. Furthermore, this paper develops a novel CLACO-based multilevel image segmentation method, termed CLACO-MIS. Using 2D Kapur's entropy as the CLACO fitness function based on 2D histograms consisting of non-local mean filtered images and grayscale images, CLACO-MIS was successfully applied to the segmentation of COVID-19 X-ray images. A comparison of CLACO with some relevant variants and other excellent peers on 30 benchmark functions from IEEE CEC2014 demonstrates the superior performance of CLACO in terms of search capability, and convergence speed as well as ability to jump out of the local optimum. Moreover, CLACO-MIS was shown to have a better segmentation effect and a stronger adaptability at different threshold levels than other methods in performing segmentation experiments of COVID-19 X-ray images. Therefore, CLACO-MIS has great potential to be used for improving the diagnostic level of COVID-19. This research will host a webservice for any question at https://aliasgharheidari.com.
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Affiliation(s)
- Lei Liu
- College of Computer Science and Technology, Changchun Normal University, Changchun, Jilin, 130032, China.
| | - Dong Zhao
- College of Computer Science and Technology, Changchun Normal University, Changchun, Jilin, 130032, China.
| | - Fanhua Yu
- College of Computer Science and Technology, Changchun Normal University, Changchun, Jilin, 130032, China.
| | - Ali Asghar Heidari
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, Zhejiang, 325035, China.
| | - Chengye Li
- Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, China
| | - Jinsheng Ouyang
- Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, China.
| | - Huiling Chen
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, Zhejiang, 325035, China.
| | - Majdi Mafarja
- Department of Computer Science, Birzeit University, POBox 14, West Bank, Palestine.
| | - Hamza Turabieh
- Department of Information Technology, College of Computers and Information Technology, P.O. Box 11099, Taif, 21944, Taif University, Taif, Saudi Arabia.
| | - Jingye Pan
- Department of Intensive Care Unit, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China; Key Laboratory of IntelligentTreatment and Life Support for Critical Diseases of Zhejiang Provincial, Wenzhou, China; Wenzhou Key Laboratory of Critical Care and Artificial Intelligence, Wenzhou, China.
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47
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Hamzenejad A, Ghoushchi SJ, Baradaran V. Clustering of Brain Tumor Based on Analysis of MRI Images Using Robust Principal Component Analysis (ROBPCA) Algorithm. BIOMED RESEARCH INTERNATIONAL 2021; 2021:5516819. [PMID: 34504897 PMCID: PMC8423553 DOI: 10.1155/2021/5516819] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 02/26/2021] [Accepted: 08/16/2021] [Indexed: 11/18/2022]
Abstract
Automated detection of brain tumor location is essential for both medical and analytical uses. In this paper, we clustered brain MRI images to detect tumor location. To obtain perfect results, we presented an unsupervised robust PCA algorithm to clustered images. The proposed method clusters brain MR image pixels to four leverages. The algorithm is implemented for five brain diseases such as glioma, Huntington, meningioma, Pick, and Alzheimer's. We used ten images of each disease to validate the optimal identification rate. According to the results obtained, 2% of the data in the bad leverage part of the image were determined, which acceptably discerned the tumor. Results show that this method has the potential to detect tumor location for brain disease with high sensitivity. Moreover, results show that the method for the Glioma images has approximately better results than others. However, according to the ROC curve for all selected diseases, the present method can find lesion location.
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Affiliation(s)
- Ali Hamzenejad
- Department of Industrial Engineering, Islamic Azad University, Tehran North Branch, Tehran, Iran
| | | | - Vahid Baradaran
- Department of Industrial Engineering, Islamic Azad University, Tehran North Branch, Tehran, Iran
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48
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Day-ahead electricity price forecasting using WPT, VMI, LSSVM-based self adaptive fuzzy kernel and modified HBMO algorithm. Sci Rep 2021; 11:17375. [PMID: 34462448 PMCID: PMC8405824 DOI: 10.1038/s41598-021-96501-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Accepted: 08/02/2021] [Indexed: 11/23/2022] Open
Abstract
Due to focal liberality in electricity market projection, researchers try to suggest powerful and successful price forecasting algorithms. Since, the accurate information of future makes best way for market participants so as to increases their profit using bidding strategies, here suggests an algorithm for electricity price anticipation. To cover this goal, separate an algorithm into three steps, namely; pre-processing, learning and tuning. The pre-processing part consists of Wavelet Packet Transform (WPT) to analyze price signal to high and low frequency subseries and Variational Mutual Information (VMI) to select valuable input data in order to helps the learning part and decreases the computation burden. Owing to the learning part, a new Least squares support vector machine based self-adaptive fuzzy kernel (LSSVM-SFK) is proposed to extract best map pattern from input data. A new modified HBMO is introduced to optimally set LSSVM-SFK variables such as bias, weight, etc. To improve the performances of HBMO, two modifications are proposed that has high stability in HBMO. Suggested forecasting algorithm is examined on electricity markets that has acceptable efficiency than other models.
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49
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Shi B, Ye H, Zheng L, Lyu J, Chen C, Heidari AA, Hu Z, Chen H, Wu P. Evolutionary warning system for COVID-19 severity: Colony predation algorithm enhanced extreme learning machine. Comput Biol Med 2021; 136:104698. [PMID: 34426165 PMCID: PMC8323529 DOI: 10.1016/j.compbiomed.2021.104698] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Revised: 07/20/2021] [Accepted: 07/23/2021] [Indexed: 12/22/2022]
Abstract
Coronavirus Disease 2019 (COVID-19) was distributed globally at the end of December 2019 due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Early diagnosis and successful COVID-19 assessment are missing, clinical care is ineffective, and deaths are high. In this study, we investigate whether the level of biochemical indicators helps to discriminate and classify the severity of the COVID-19 using the machine learning method. This research creates an efficient intelligence method for the diagnosis of COVID-19 from the perspective of biochemical indexes. The framework is proposed by integrating an enhanced new stochastic called the colony predation algorithm (CPA) with a kernel extreme learning machine (KELM), abbreviated as ECPA-KELM. The core feature of the approach is the ECPA algorithm which incorporates the two main operators that have been abstained from the grey wolf optimizer and moth-flame optimizer to improve and restore the CPA research functions and are simultaneously used to optimize the parameters and to select features for KELM. The ECPA output is checked thoroughly using IEEE CEC2017 benchmark to verify the capacity of the proposed methodology. Finally, in the diagnosis of COVID-19 using biochemical indexes, the designed ECPA-KELM model and other competing KELM models based on other optimization are used. Checking statistical results will display improved predictive properties for all metrics and higher stability. ECPA-KELM can also be used to discriminate and classify the severity of the COVID-19 as a possible computer-aided method and provide effective early warning for the treatment and diagnosis of COVID-19.
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Affiliation(s)
- Beibei Shi
- Affiliated People's Hospital of Jiangsu University, 8 Dianli Road, Zhenjiang, Jiangsu, 212000, China.
| | - Hua Ye
- Department of Pulmonary and Critical Care Medicine, Affiliated Yueqing Hospital, Wenzhou Medical University, Yueqing, 325600, China.
| | - Long Zheng
- Department of Pulmonary and Critical Care Medicine, Affiliated Yueqing Hospital, Wenzhou Medical University, Yueqing, 325600, China.
| | - Juncheng Lyu
- Weifang Medical University School of Public Health, China.
| | - Cheng Chen
- Center of Clinical Research, Wuxi People's Hospital of Nanjing Medical University, Wuxi, Jiangsu, 214023, China.
| | - Ali Asghar Heidari
- School of Surveying and Geospatial Engineering, College of Engineering, University of Tehran, Tehran, Iran.
| | - Zhongyi Hu
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, 325035, China.
| | - Huiling Chen
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, 325035, China.
| | - Peiliang Wu
- Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou 325000, China.
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50
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Isola LA, Chen TC, Elveny M, Alkaim AF, Thangavelu L, Kianfar E. Application of micro and porous materials as nano-reactors. REV INORG CHEM 2021. [DOI: 10.1515/revic-2021-0007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
In general, nanostructured materials with specific size, shape and geometry have unique and different properties from bulk materials. Using reaction media with nanometer and micrometer dimensions, they can produce new nanomaterials with interesting and remarkable properties. In general, nano-reactors are nanometer-sized chambers in which chemical reactions can take place. of course, nanoreactors are somehow part of the reaction, and this is the main difference between them and micro-reactors. One of the useful solutions to achieve the environment of nanoreactors is the use of porous materials, so due to the importance of nanoreactors, porous structures of silicate and zeolite are among the most prominent and widely used compounds in this group.
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Affiliation(s)
- Lawal Adedoyin Isola
- Department of Accounting and Finance , Landmark University , Omu-Aran , Nigeria
- Sustainable Development Goal 17 (Partnership for the Goals) Research Cluster, Landmark University , Omu-Aran , Nigeria
- SDG1 (Zero Hunger) Research Cluster, Landmark University , Omu-Aran , Nigeria
- SDG6 (Clean Energy) Research Cluster, Landmark University , Omu-Aran , Nigeria
| | | | - Marischa Elveny
- Data Science & Computational Intelligence Research Group , Universitas Sumatera Utara , Medan , Indonesia
| | - Ayad F. Alkaim
- Chemistry Department , College of Science for Women, University of Babylon , Hillah , Iraq
| | - Lakshmi Thangavelu
- Department of Pharmacology , Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Sciences, Saveetha University , Chennai , India
| | - Ehsan Kianfar
- SDG 8 (Decent Work and Economic Growth) Research Cluster, Landmark University , Omu-Aran , Nigeria
- Department of Chemical Engineering , Arak Branch, Islamic Azad University , Arak , Iran
- Young Researchers and Elite Club , Gachsaran Branch, Islamic Azad University , Gachsaran , Iran
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