1
|
Optimized numerical solutions of SIRDVW multiage model controlling SARS-CoV-2 vaccine roll out: An application to the Italian scenario. Infect Dis Model 2023; 8:672-703. [PMID: 37346476 PMCID: PMC10240908 DOI: 10.1016/j.idm.2023.05.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Revised: 05/15/2023] [Accepted: 05/29/2023] [Indexed: 06/23/2023] Open
Abstract
In the context of SARS-CoV-2 pandemic, mathematical modelling has played a fundamental role for making forecasts, simulating scenarios and evaluating the impact of preventive political, social and pharmaceutical measures. Optimal control theory represents a useful mathematical tool to plan the vaccination campaign aimed at eradicating the pandemic as fast as possible. The aim of this work is to explore the optimal prioritisation order for planning vaccination campaigns able to achieve specific goals, as the reduction of the amount of infected, deceased and hospitalized in a given time frame, among age classes. For this purpose, we introduce an age stratified SIR-like epidemic compartmental model settled in an abstract framework for modelling two-doses vaccination campaigns and conceived with the description of COVID19 disease. Compared to other recent works, our model incorporates all stages of the COVID-19 disease, including death or recovery, without accounting for additional specific compartments that would increase computational complexity and that are not relevant for our purposes. Moreover, we introduce an optimal control framework where the model is the state problem while the vaccine doses administered are the control variables. An extensive campaign of numerical tests, featured in the Italian scenario and calibrated on available data from Dipartimento di Protezione Civile Italiana, proves that the presented framework can be a valuable tool to support the planning of vaccination campaigns. Indeed, in each considered scenario, our optimization framework guarantees noticeable improvements in terms of reducing deceased, infected or hospitalized individuals with respect to the baseline vaccination policy.
Collapse
|
2
|
City-scale model for COVID-19 epidemiology with mobility and social activities represented by a set of hidden Markov models. Comput Biol Med 2023; 160:106942. [PMID: 37156221 PMCID: PMC10152763 DOI: 10.1016/j.compbiomed.2023.106942] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 03/19/2023] [Accepted: 04/14/2023] [Indexed: 05/10/2023]
Abstract
BACKGROUND AND OBJECTIVE SARS-CoV-2 emerged by the end of 2019 and became a global pandemic due to its rapid spread. Various outbreaks of the disease in different parts of the world have been studied, and epidemiological analyses of these outbreaks have been useful for developing models with the aim of tracking and predicting the spread of epidemics. In this paper, an agent-based model that predicts the local daily evolution of the number of people hospitalized in intensive care due to COVID-19 is presented. METHODS An agent-based model has been developed, taking into consideration the most relevant characteristics of the geography and climate of a mid-size city, its population and pathology statistics, and its social customs and mobility, including the state of public transportation. In addition to these inputs, the different phases of isolation and social distancing are also taken into account. By means of a set of hidden Markov models, the system captures and reproduces virus transmission associated with the stochastic nature of people's mobility and activities in the city. The spread of the virus in the host is also simulated by following the stages of the disease and by considering the existence of comorbidities and the proportion of asymptomatic carriers. RESULTS As a case study, the model was applied to Paraná city (Entre Ríos, Argentina) in the second half of 2020. The model adequately predicts the daily evolution of people hospitalized in intensive care due to COVID-19. This adequacy is reflected by the fact that the prediction of the model (including its dispersion), as with the data reported in the field, never exceeded 90% of the capacity of beds installed in the city. In addition, other epidemiological variables of interest, with discrimination by age range, were also adequately reproduced, such as the number of deaths, reported cases, and asymptomatic individuals. CONCLUSIONS The model can be used to predict the most likely evolution of the number of cases and hospital bed occupancy in the short term. By adjusting the model to match the data on hospitalizations in intensive care units and deaths due to COVID-19, it is possible to analyze the impact of isolation and social distancing measures on the disease spread dynamics. In addition, it allows for simulating combinations of characteristics that would lead to a potential collapse in the health system due to lack of infrastructure as well as predicting the impact of social events or increases in people's mobility.
Collapse
|
3
|
Interval type-2 Fuzzy control and stochastic modeling of COVID-19 spread based on vaccination and social distancing rates. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 232:107443. [PMID: 36889249 PMCID: PMC9951621 DOI: 10.1016/j.cmpb.2023.107443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/25/2022] [Revised: 02/20/2023] [Accepted: 02/21/2023] [Indexed: 06/18/2023]
Abstract
BACKGROUND AND OBJECTIVE Besides efforts on vaccine discovery, robust and intuitive government policies could also significantly influence the pandemic state. However, such policies require realistic virus spread models, and the major works on COVID-19 to date have been only case-specific and use deterministic models. Additionally, when a disease affects large portions of the population, countries develop extensive infrastructures to contain the condition that should adapt continuously and extend the healthcare system's capabilities. An accurate mathematical model that reasonably addresses these complex treatment/population dynamics and their corresponding environmental uncertainties is necessary for making appropriate and robust strategic decisions. METHODS Here, we propose an interval type-2 fuzzy stochastic modeling and control strategy to deal with the realistic uncertainties of pandemics and manage the size of the infected population. For this purpose, we first modify a previously established COVID-19 model with definite parameters to a Stochastic SEIAR (S2EIAR) approach with uncertain parameters and variables. Next, we propose to use normalized inputs, rather than the usual parameter settings in the previous case-specific studies, hence offering a more generalized control structure. Furthermore, we examine the proposed genetic algorithm-optimized fuzzy system in two scenarios. The first scenario aims to keep infected cases below a certain threshold, while the second addresses the changing healthcare capacities. Finally, we examine the proposed controller on stochasticity and disturbance in parameters, population sizes, social distance, and vaccination rate. RESULTS The results show the robustness and efficiency of the proposed method in the presence of up to 1% noise and 50% disturbance in tracking the desired size of the infected population. The proposed method is compared to Proportional Derivative (PD), Proportional Integral Derivative (PID), and type-1 fuzzy controllers. In the first scenario, both fuzzy controllers perform more smoothly despite PD and PID controllers reaching a lower mean squared error (MSE). Meanwhile, the proposed controller outperforms PD, PID, and the type-1 fuzzy controller for the MSE and decision policies for the second scenario. CONCLUSIONS The proposed approach explains how we should decide on social distancing and vaccination rate policies during pandemics against the prevalent uncertainties in disease detection and reporting.
Collapse
|
4
|
Nonlinear dynamic epidemiological analysis of effects of vaccination and dynamic transmission on COVID-19. NONLINEAR DYNAMICS 2022; 111:951-963. [PMID: 36530597 PMCID: PMC9734520 DOI: 10.1007/s11071-022-08125-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/15/2022] [Accepted: 11/08/2022] [Indexed: 06/17/2023]
Abstract
This paper is concerned with nonlinear modeling and analysis of the COVID-19 pandemic. We are especially interested in two current topics: effect of vaccination and the universally observed oscillations in infections. We use a nonlinear Susceptible, Infected, & Immune model incorporating a dynamic transmission rate and vaccination policy. The US data provides a starting point for analyzing stability, bifurcations and dynamics in general. Further parametric analysis reveals a saddle-node bifurcation under imperfect vaccination leading to the occurrence of sustained epidemic equilibria. This work points to the tremendous value of systematic nonlinear dynamic analysis in pandemic modeling and demonstrates the dramatic influence of vaccination, and frequency, phase, and amplitude of transmission rate on the persistent dynamic behavior of the disease.
Collapse
|
5
|
Optimal control strategies to combat COVID-19 transmission: A mathematical model with incubation time delay. RESULTS IN CONTROL AND OPTIMIZATION 2022; 9. [PMCID: PMC9552531 DOI: 10.1016/j.rico.2022.100176] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The coronavirus disease 2019, started spreading around December 2019, still persists in the population all across the globe. Though different countries have been able to cope with the disease to some extent and vaccination for the same has been developed, it cannot be ignored that the disease is still not on the verge of completely eradicating, which in turn creates a need for having deeper insights of the disease in order to understand it well and hence be able to work towards its eradication. Meanwhile, using mitigation strategies like non-pharmaceutical interventions can help in controlling the disease. In this work, our aim is to study the dynamics of COVID-19 using compartmental approach by applying various analytical methods. We obtain formula for important tools like R0 and establish the stability of disease-free equilibrium point for R0<1. Further, based on R0, we discuss the stability and existence of the endemic equilibrium point. We incorporate various control strategies possible and using optimal control theory, study their expected positive impacts on the spread of the disease. Later, using a biologically feasible set of parameters, we numerically analyse the model. We even study the trend of the outbreak in China, for over 120 days, where the active cases rise up to a peak and then the curve flattens.
Collapse
|
6
|
A Mathematical Modelling and Analysis of COVID-19 Transmission Dynamics with Optimal Control Strategy. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022. [DOI: 10.1155/2022/8636530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
We proposed a deterministic compartmental model for the transmission dynamics of COVID-19 disease. We performed qualitative and quantitative analysis of the deterministic model concerning the local and global stability of the disease-free and endemic equilibrium points. We found that the disease-free equilibrium is locally asymptotically stable when the basic reproduction number is less than unity, while the endemic equilibrium point becomes locally asymptotically stable if the basic reproduction number is above unity. Furthermore, we derived the global stability of both the disease-free and endemic equilibriums of the system by constructing some Lyapunov functions. If
, it is found that the disease-free equilibrium is globally asymptotically stable, while the endemic equilibrium point is globally asymptotically stable when
. The numerical results of the general dynamics are in agreement with the theoretical solutions. We established the optimal control strategy by using Pontryagin’s maximum principle. We performed numerical simulations of the optimal control system to investigate the impact of implementing different combinations of optimal controls in controlling and eradicating COVID-19 disease. From this, a significant difference in the number of cases with and without controls was observed. We observed that the implementation of the combination of the control treatment rate,
, and the control treatment rate,
, has shown effective and efficient results in eradicating COVID-19 disease in the community relative to the other strategies.
Collapse
|
7
|
A survey of COVID-19 in public transportation: Transmission risk, mitigation and prevention. MULTIMODAL TRANSPORTATION 2022. [PMCID: PMC9174338 DOI: 10.1016/j.multra.2022.100030] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
The COVID-19 pandemic is posing significant challenges to public transport operators by drastically reducing demand while also requiring them to implement measures that minimize risks to the health of the passengers. While the collective scientific understanding of the SARS-CoV-2 virus and COVID-19 pandemic are rapidly increasing, currently there is a lack of understanding of how the COVID-19 relates to public transport operations. This article presents a comprehensive survey of the current research on COVID-19 transmission mechanisms and how they relate to public transport. We critically assess literature through a lens of disaster management and survey the main transmission mechanisms, forecasting, risks, mitigation, and prevention mechanisms. Social distancing and control on passenger density are found to be the most effective mechanisms. Computing and digital technology can support risk control. Based on our survey, we draw guidelines for public transport operators and highlight open research challenges to establish a research roadmap for the path forward.
Collapse
|
8
|
Critical policies disparity of the first and second waves of COVID-19 in the United Kingdom. Int J Equity Health 2022; 21:115. [PMID: 35996172 PMCID: PMC9394080 DOI: 10.1186/s12939-022-01723-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Accepted: 08/15/2022] [Indexed: 11/24/2022] Open
Abstract
Objective This study aims to compare the differences in COVID-19 prevention and control policies adopted by the United Kingdom (UK) during the first wave (31 January 2020 to 6 September 2020) and the second wave (7 September 2020 to 12 April 2021), and analyze the effectiveness of the policies, so as to provide empirical experience for the prevention and control of COVID-19. Methods We systematically summarized the pandemic prevention and control policies of the UK from official websites and government documents, collated the epidemiological data from 31 January 2020 to 12 April 2021, and analyzed the effectiveness of the two waves of pandemic prevention and control policies. Results The main pandemic prevention and control policies adopted by the UK include surveillance and testing measures, border control measures, community and social measures, blockade measures, health care measures, COVID-19 vaccination measure, and relaxed pandemic prevention measures. The new cases per day curve showed only one peak in the first wave and two peaks in the second wave. The number of new cases per million in the second wave was much higher than that in the first wave, and the curve fluctuated less. The difference between mortality per million was small, and the curve fluctuated widely. Conclusion During the first and second waves of COVID-19, the UK implemented three lockdowns and managed to slow the spread of the pandemic. The UK’s experience in mitigating the second wave proves that advancing COVID-19 vaccination needs to be accompanied by ongoing implementation of non-pharmacological interventions to reduce the transmission rate of infection. And a stricter lockdown ensures that the containment effect is maximized during the lockdown period. In addition, these three lockdowns featured distinct mitigation strategies and the UK’s response to COVID-19 is mitigation strategy that reduce new cases in the short term, but with the risk of the pandemic rebound.
Collapse
|
9
|
An epidemiological study on face masks and acne in a Nigerian population. PLoS One 2022; 17:e0268224. [PMID: 35588427 PMCID: PMC9119463 DOI: 10.1371/journal.pone.0268224] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Accepted: 04/25/2022] [Indexed: 12/22/2022] Open
Abstract
Background
Acne vulgaris is a skin disorder that affects males and females with significant impact on quality of life. The onset of the COVID-19 pandemic led to a series of non-pharmaceutical interventions globally to reduce the spread of the virus particularly since there have been no known cures or definitive treatment for the disease. One key non-pharmaceutical intervention was recommendation on wearing of face masks. There are reports of discomfort associated with wearing face mask including complaints of various skin rashes, acne and headaches which could hinder appropriate use of face masks. While the dermatological problems associated with face mask use have been comprehensively explored in high income countries, the data is sparse in sub-Saharan Africa. We aimed to determine the association between face mask use and development of acne vulgaris in our developing country setting. We subsequently determined risk factors for development of acne vulgaris such as duration of wearing face masks, type of face mask, and prior dermatological skin condition history. We aimed to also determine the potential of acne development secondary to face mask use to reducing predisposition to wearing face masks.
Methods
This was an observational cross-sectional study conducted in within two local government areas of the Federal Capital Territory, Abuja. Trained interviewers administered pre-tested questionnaires to 1316 consecutive consenting adult participants randomly approached for informed consent at various public locations. Information was inputted into MS Excel and analyzed using Epi-info.
Results
A total number of 1316 persons participated in this study with mean age 34.4 ±12.3 years and median age 35.5years. Male: female ratio was 1:1.41. New onset acne or worsening of acne following consistent wearing of face masks was reported by 323 (24.5%) of the 1316 participants in this study. The surgical face mask was the least likely to predispose to acne p<0.05. Compared with the surgical mask, persons using N95 face mask and cloth mask were 1.89 and 1.41 times more likely to have acne respectively. Persons with prior history of acne were more likely to develop new acne or experience worsening of acne following wearing of face mask OR 3.89, 95% CI 2.85, 5.33; p <0.05). The length of time of daily mask wearing was not significantly associated with occurrence of new onset acne or worsening of acne. Persons reporting prior histories of allergy were more likely to develop acne in this study (OR 2.01, 95% CI 1.50, 2.88; p<0.05). In this study, 192 (59.4%) of those who reported having acne following face masks use responded they have a negative predisposition to wearing masks.
Conclusion
Our finding of greater predisposition to development or worsening of acne following consistent use of face masks could have implications for the control strategy of COVID-19. The finding that the N95 face mask was more significantly associated with acne is of concern as this is the preferred face mask in healthcare settings. It is important for the medical community to investigate feasible and safe recommendations to help alleviate this condition.
Collapse
|
10
|
Modelling policy combinations of vaccination and transmission suppression of SARS-CoV-2 in Rio de Janeiro, Brazil. Infect Dis Model 2022; 7:231-242. [PMID: 35005325 PMCID: PMC8719375 DOI: 10.1016/j.idm.2021.12.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 12/23/2021] [Accepted: 12/24/2021] [Indexed: 11/29/2022] Open
Abstract
COVID-19 vaccination in Brazil required a phased program, with priorities for age groups, health workers, and vulnerable people. Social distancing and isolation interventions have been essential to mitigate the advance of the pandemic in several countries. We developed a mathematical model capable of capturing the dynamics of the SARS-CoV-2 dissemination aligned with social distancing, isolation measures, and vaccination. Surveillance data from the city of Rio de Janeiro provided a case study to analyze possible scenarios, including non-pharmaceutical interventions and vaccination in the epidemic scenario. Our results demonstrate that the combination of vaccination and policies of transmission suppression potentially lowered the number of hospitalized cases by 380+ and 66+ thousand cases, respectively, compared to an absence of such policies. On top of transmission suppression-only policies, vaccination impacted more than 230+ thousand averted hospitalized cases and 43+ thousand averted deaths. Therefore, health surveillance activities should be maintained along with vaccination planning in scheduled groups until a large vaccinated coverage is reached. Furthermore, this analytical framework enables evaluation of such scenarios.
Collapse
|
11
|
Optimal Control Studies on Age Structured Modeling of COVID-19 in Presence of Saturated Medical Treatment of Holling Type III. DIFFERENTIAL EQUATIONS AND DYNAMICAL SYSTEMS 2022:1-40. [PMID: 35194346 PMCID: PMC8855658 DOI: 10.1007/s12591-022-00593-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Accepted: 01/11/2022] [Indexed: 06/14/2023]
Abstract
COVID-19 pandemic has caused the most severe health problems to adults over 60 years of age, with particularly fatal consequences for those over 80. In this case, age-structured mathematical modeling could be useful to determine the spread of the disease and to develop a better control strategy for different age groups. In this study, we first propose an age-structured model considering two different age groups, the first group with population age below 30 years and the second with population age above 30 years, and discuss the stability of the equilibrium points and the sensitivity of the model parameters. In the second part of the study, we propose an optimal control problem to understand the age-specific role of treatment in controlling the spread of COVID -19 infection. From the stability analysis of the equilibrium points, it was found that the infection-free equilibrium point remains locally asymptotically stable whenR 0 < 1 , and when R 0 is greater than one, the infected equilibrium point remains locally asymptotically stable. The results of the optimal control study show that infection decreases with the implementation of an optimal treatment strategy, and that a combined treatment strategy considering treatment for both age groups is effective in keeping cumulative infection low in severe epidemics. Cumulative infection was found to increase with increasing saturation in medical treatment.
Collapse
|
12
|
Future implications of COVID-19 through Mathematical modeling. RESULTS IN PHYSICS 2022; 33:105097. [PMID: 34976710 PMCID: PMC8709924 DOI: 10.1016/j.rinp.2021.105097] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 11/27/2021] [Accepted: 12/03/2021] [Indexed: 05/30/2023]
Abstract
COVID-19 is a pandemic respiratory illness. The disease spreads from human to human and is caused by a novel coronavirus SARS-CoV-2. In this study, we formulate a mathematical model of COVID-19 and discuss the disease free state and endemic equilibrium of the model. Based on the sensitivity indexes of the parameters, control strategies are designed. The strategies reduce the densities of the infected classes but do not satisfy the criteria/threshold condition of the global stability of disease free equilibrium. On the other hand, the endemic equilibrium of the disease is globally asymptotically stable. Therefore it is concluded that the disease cannot be eradicated with present resources and the human population needs to learn how to live with corona. For validation of the results, numerical simulations are obtained using fourth order Runge-Kutta method.
Collapse
|
13
|
A Global Report on the Dynamics of COVID-19 with Quarantine and Hospitalization: A Fractional Order Model with Non-Local Kernel. Comput Biol Chem 2022; 98:107645. [PMID: 35276575 PMCID: PMC8857780 DOI: 10.1016/j.compbiolchem.2022.107645] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 02/15/2022] [Accepted: 02/16/2022] [Indexed: 01/13/2023]
|
14
|
Disease control as an optimization problem. PLoS One 2021; 16:e0257958. [PMID: 34591897 PMCID: PMC8483379 DOI: 10.1371/journal.pone.0257958] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 09/14/2021] [Indexed: 11/20/2022] Open
Abstract
In the context of epidemiology, policies for disease control are often devised through a mixture of intuition and brute-force, whereby the set of logically conceivable policies is narrowed down to a small family described by a few parameters, following which linearization or grid search is used to identify the optimal policy within the set. This scheme runs the risk of leaving out more complex (and perhaps counter-intuitive) policies for disease control that could tackle the disease more efficiently. In this article, we use techniques from convex optimization theory and machine learning to conduct optimizations over disease policies described by hundreds of parameters. In contrast to past approaches for policy optimization based on control theory, our framework can deal with arbitrary uncertainties on the initial conditions and model parameters controlling the spread of the disease, and stochastic models. In addition, our methods allow for optimization over policies which remain constant over weekly periods, specified by either continuous or discrete (e.g.: lockdown on/off) government measures. We illustrate our approach by minimizing the total time required to eradicate COVID-19 within the Susceptible-Exposed-Infected-Recovered (SEIR) model proposed by Kissler et al. (March, 2020).
Collapse
|
15
|
A review of mathematical model-based scenario analysis and interventions for COVID-19. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 209:106301. [PMID: 34392001 PMCID: PMC8314871 DOI: 10.1016/j.cmpb.2021.106301] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Accepted: 07/17/2021] [Indexed: 05/11/2023]
Abstract
Mathematical model-based analysis has proven its potential as a critical tool in the battle against COVID-19 by enabling better understanding of the disease transmission dynamics, deeper analysis of the cost-effectiveness of various scenarios, and more accurate forecast of the trends with and without interventions. However, due to the outpouring of information and disparity between reported mathematical models, there exists a need for a more concise and unified discussion pertaining to the mathematical modeling of COVID-19 to overcome related skepticism. Towards this goal, this paper presents a review of mathematical model-based scenario analysis and interventions for COVID-19 with the main objectives of (1) including a brief overview of the existing reviews on mathematical models, (2) providing an integrated framework to unify models, (3) investigating various mitigation strategies and model parameters that reflect the effect of interventions, (4) discussing different mathematical models used to conduct scenario-based analysis, and (5) surveying active control methods used to combat COVID-19.
Collapse
|
16
|
COVID-19: The Disease, the Immunological Challenges, the Treatment with Pharmaceuticals and Low-Dose Ionizing Radiation. Cells 2021; 10:2212. [PMID: 34571861 PMCID: PMC8470324 DOI: 10.3390/cells10092212] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 08/20/2021] [Accepted: 08/23/2021] [Indexed: 02/07/2023] Open
Abstract
The year 2020 will be carved in the history books-with the proliferation of COVID-19 over the globe and with frontline health workers and basic scientists worldwide diligently fighting to alleviate life-threatening symptoms and curb the spread of the disease. Behind the shocking prevalence of death are countless families who lost loved ones. To these families and to humanity as a whole, the tallies are not irrelevant digits, but a motivation to develop effective strategies to save lives. However, at the onset of the pandemic, not many therapeutic choices were available besides supportive oxygen, anti-inflammatory dexamethasone, and antiviral remdesivir. Low-dose radiation (LDR), at a much lower dosage than applied in cancer treatment, re-emerged after a 75-year silence in its use in unresolved pneumonia, as a scientific interest with surprising effects in soothing the cytokine storm and other symptoms in severe COVID-19 patients. Here, we review the epidemiology, symptoms, immunological alterations, mutations, pharmaceuticals, and vaccine development of COVID-19, summarizing the history of X-ray irradiation in non-COVID diseases (especially pneumonia) and the currently registered clinical trials that apply LDR in treating COVID-19 patients. We discuss concerns, advantages, and disadvantages of LDR treatment and potential avenues that may provide empirical evidence supporting its potential use in defending against the pandemic.
Collapse
|
17
|
Analytical and qualitative investigation of COVID-19 mathematical model under fractional differential operator. MATHEMATICAL METHODS IN THE APPLIED SCIENCES 2021; 46:MMA7704. [PMID: 34908635 PMCID: PMC8662024 DOI: 10.1002/mma.7704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Revised: 05/30/2021] [Accepted: 06/07/2021] [Indexed: 06/14/2023]
Abstract
In the current article, we aim to study in detail a novel coronavirus (2019-nCoV or COVID-19) mathematical model for different aspects under Caputo fractional derivative. First, from analysis point of view, existence is necessary to be investigated for any applied problem. Therefore, we used fixed point theorem's due to Banach's and Schaefer's to establish some sufficient results regarding existence and uniqueness of the solution to the proposed model. On the other hand, stability is important in respect of approximate solution, so we have developed condition sufficient for the stability of Ulam-Hyers and their different types for the considered system. In addition, the model has also been considered for semianalytical solution via Laplace Adomian decomposition method (LADM). On Matlab, by taking some real data about Pakistan, we graph the obtained results. In the last of the manuscript, a detail discussion and brief conclusion are provided.
Collapse
|
18
|
On study of fractional order epidemic model of COVID-19 under non-singular Mittag-Leffler kernel. RESULTS IN PHYSICS 2021; 26:104402. [PMID: 34189025 PMCID: PMC8216059 DOI: 10.1016/j.rinp.2021.104402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Revised: 05/23/2021] [Accepted: 05/27/2021] [Indexed: 06/13/2023]
Abstract
This paper investigates the analysis of the fraction mathematical model of the novel coronavirus (COVID-19), which is indeed a source of threat all over the globe. This paper deals with the transmission mechanism by some affected parameters in the problem. The said study is carried out by the consideration of a fractional-order epidemic model describing the dynamics of COVID-19 under a non-singular kernel type of derivative. The concerned model examine via non-singular fractional-order derivative known as Atangana-Baleanu derivative in Caputo sense (ABC). The problem analyzes for qualitative analysis and determines at least one solution by applying the approach of fixed point theory. The uniqueness of the solution is derived by the Banach contraction theorem. For iterative solution, the technique of iterative fractional-order Adams-Bashforth scheme is applied. Numerical simulation for the proposed scheme is performed at various fractional-order lying between 0, 1 and for integer-order 1. We also compare the compartmental quantities of the said model at two different effective contact rates of β . All the compartments show convergence and stability with growing time. The simulation of the iterative techniques is also compared with the Laplace Adomian decomposition method (LADM). Good comparative results for the whole density have been achieved by different fractional orders and obtain the stability faster at the low fractional orders while slowly at higher-order.
Collapse
|
19
|
An optimal control analysis of a COVID-19 model. ALEXANDRIA ENGINEERING JOURNAL 2021; 60:2875-2884. [PMCID: PMC7825988 DOI: 10.1016/j.aej.2021.01.022] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 01/10/2021] [Accepted: 01/18/2021] [Indexed: 05/26/2023]
Abstract
This paper aims to explore the optimal control of the novel pandemic COVID-19 using non-clinical approach. We formulate a mathematical model to analyze the transmission of the infection through different human compartments. By applying a sensitivity test, we obtain the sensitivity indexes of the parameters involved in the transmission of the disease. We demonstrate the most active/sensitive parameters to analyze the spread of the coronavirus COVID-19. The most active transmission parameters are interposed by introducing control variables. The control intervention is in the form of smart lockdown, frequent handwash, control of the disease’s side effects, face mask, and sanitizer. We Formulate Hamilton and Lagrangian to investigate the existence of the optimal control. Pontryagin’s Maximum Principle describes the control variables in the optimal control model. The objective function is designed to reduce both the infection and the cost of interventions. We use numerical simulation to verify the results of the control variables by Matlab 2019.
Collapse
|
20
|
Non-pharmaceutical interventions during the COVID-19 pandemic: A review. PHYSICS REPORTS 2021; 913:1-52. [PMID: 33612922 PMCID: PMC7881715 DOI: 10.1016/j.physrep.2021.02.001] [Citation(s) in RCA: 204] [Impact Index Per Article: 68.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Accepted: 02/08/2021] [Indexed: 05/06/2023]
Abstract
Infectious diseases and human behavior are intertwined. On one side, our movements and interactions are the engines of transmission. On the other, the unfolding of viruses might induce changes to our daily activities. While intuitive, our understanding of such feedback loop is still limited. Before COVID-19 the literature on the subject was mainly theoretical and largely missed validation. The main issue was the lack of empirical data capturing behavioral change induced by diseases. Things have dramatically changed in 2020. Non-pharmaceutical interventions (NPIs) have been the key weapon against the SARS-CoV-2 virus and affected virtually any societal process. Travel bans, events cancellation, social distancing, curfews, and lockdowns have become unfortunately very familiar. The scale of the emergency, the ease of survey as well as crowdsourcing deployment guaranteed by the latest technology, several Data for Good programs developed by tech giants, major mobile phone providers, and other companies have allowed unprecedented access to data describing behavioral changes induced by the pandemic. Here, I review some of the vast literature written on the subject of NPIs during the COVID-19 pandemic. In doing so, I analyze 348 articles written by more than 2518 authors in the first 12 months of the emergency. While the large majority of the sample was obtained by querying PubMed, it includes also a hand-curated list. Considering the focus, and methodology I have classified the sample into seven main categories: epidemic models, surveys, comments/perspectives, papers aiming to quantify the effects of NPIs, reviews, articles using data proxies to measure NPIs, and publicly available datasets describing NPIs. I summarize the methodology, data used, findings of the articles in each category and provide an outlook highlighting future challenges as well as opportunities.
Collapse
|
21
|
The Impact of Health Literacy on Knowledge and Attitudes towards Preventive Strategies against COVID-19: A Cross-Sectional Study. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:ijerph18105421. [PMID: 34069438 PMCID: PMC8159089 DOI: 10.3390/ijerph18105421] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Revised: 05/17/2021] [Accepted: 05/18/2021] [Indexed: 01/08/2023]
Abstract
The coronavirus disease 2019 (COVID-19) pandemic introduced a set of mitigation measures based on personal behavior and attitudes. In the absence of vaccination or specific treatment, it became essential to comply with these measures to reduce infection transmission. Health literacy is the basis for changing behaviors. AIM To characterize the impact of literacy on knowledge and attitudes towards preventive strategies against COVID-19. METHODS This cross-sectional study involved an online questionnaire applied to students of the University of Porto, Portugal, containing questions about knowledge and attitudes towards COVID-19 based on European guidelines. Health literacy was assessed through the Newest Vital Sign questionnaire. Logistic regression estimated the relationship between health literacy and both knowledge and attitudes. RESULTS We included 871 participants (76.3% female), with a median age of 22 years old. We found adequate literacy in 92% of our sample, irrespective of gender and age. In the global analysis, 78.6% of the participants had adequate knowledge, and 90.4% had adequate attitudes. We found that better literacy was significantly associated with attitudes towards COVID-19, but not with better knowledge. In a model adjusted for gender, age, and previous education in the health field, female gender and previous education in the health field were associated with better knowledge and attitudes. CONCLUSION Better health literacy is associated with better attitudes towards preventive strategies against COVID-19. We should invest in ways to improve health literacy, so we can improve people's attitudes and consequently reduce coronavirus' transmission.
Collapse
|
22
|
Potentials of constrained sliding mode control as an intervention guide to manage COVID19 spread. Biomed Signal Process Control 2021; 67:102557. [PMID: 33727950 PMCID: PMC7945868 DOI: 10.1016/j.bspc.2021.102557] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Revised: 12/18/2020] [Accepted: 03/07/2021] [Indexed: 11/27/2022]
Abstract
This work evaluates the potential of using sliding mode reference conditioning (SMRC) techniques as a guide for non-pharmaceutical intervention (NPI) to control the COVID-19 pandemic. In particular, for the epidemiological problem addressed here, it is used to compute the contact rate reduction requirement in order to limit the infectious population to a given threshold. The SMRC controller allows the desired output variable limit and its approaching rate to be tuned explicitly. Implementation issues are taken into account and a periodically update of the NPI is proposed for the real life application. The strategy is evaluated under different scenarios where its distinctive features are exhibited.
Collapse
|
23
|
The Impact of Universal Mask Use on SARS-COV-2 in Victoria, Australia on the Epidemic Trajectory of COVID-19. Front Public Health 2021; 9:625499. [PMID: 33968879 PMCID: PMC8096905 DOI: 10.3389/fpubh.2021.625499] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Accepted: 03/10/2021] [Indexed: 12/24/2022] Open
Abstract
Objective(s): To estimate the impact of universal community face mask use in Victoria, Australia along with other routine disease control measures in place. Methods: A mathematical modeling study using an age structured deterministic model for Victoria, was simulated for 123 days between 1 June 2020 and 1 October 2020, incorporating lockdown, contact tracing, and case findings with and without mask use in varied scenarios. The model tested the impact of differing scenarios of the universal use of face masks in Victoria, by timing, varying mask effectiveness, and uptake. Results: A six-week lockdown with standard control measures, but no masks, would have resulted in a large resurgence by September, following the lifting of restrictions. Mask use can substantially reduce the epidemic size, with a greater impact if at least 50% of people wear a mask which has an effectiveness of at least 40%. Early mask use averts more cases than mask usage that is only implemented closer to the peak. No mask use, with a 6-week lockdown, results in 67,636 cases and 120 deaths by 1 October 2020 if no further lockdowns are used. If mask use at 70% uptake commences on 23 July 2020, this is reduced to 7,961 cases and 42 deaths. We estimated community mask effectiveness to be 11%. Conclusion(s): Lockdown and standard control measures may not have controlled the epidemic in Victoria. Mask use can substantially improve epidemic control if its uptake is higher than 50% and if moderately effective masks are used. Early mask use should be considered in other states if community transmission is present, as this has a greater effect than later mask wearing mandates.
Collapse
|
24
|
Network dynamic model of epidemic transmission introducing a heterogeneous control factor. J Med Virol 2021; 93:6496-6505. [PMID: 33851729 PMCID: PMC8250401 DOI: 10.1002/jmv.27025] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Revised: 04/05/2021] [Accepted: 04/12/2021] [Indexed: 01/14/2023]
Abstract
The COVID-19 epidemic is not only a medical issue but also a sophisticated social problem. We propose a network dynamics model of epidemic transmission introducing a heterogeneous control factor. The proposed model applied the classical susceptible- exposed-infectious-recovered model to the network based on effective distance and was modified by introducing a heterogeneous control factor with temporal and spatial characteristics. International aviation data were approximately used to estimate the flux fraction matrix, and the effective distance was calculated. Through parameter estimation and simulation, the theoretical values of the modified model fit well with practical values. By adjusting the parameters and observing the change of the results, we found that the modified model is more in line with the actual needs and has higher credibility in the comprehensive analysis. The assessment shows that the number of confirmed cases worldwide will reach about 20 million optimistically. In severe cases, the peak value will exceed 80 million, and the late stage of the epidemic shows a long tail shape, lasting more than one and a half years. The effective way to control the global epidemic is to strengthen international cooperation and to impose international travel restrictions and other measures.
Collapse
|
25
|
Stay-at-home policy is a case of exception fallacy: an internet-based ecological study. Sci Rep 2021; 11:5313. [PMID: 33674661 PMCID: PMC7935901 DOI: 10.1038/s41598-021-84092-1] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Accepted: 02/01/2021] [Indexed: 12/16/2022] Open
Abstract
A recent mathematical model has suggested that staying at home did not play a dominant role in reducing COVID-19 transmission. The second wave of cases in Europe, in regions that were considered as COVID-19 controlled, may raise some concerns. Our objective was to assess the association between staying at home (%) and the reduction/increase in the number of deaths due to COVID-19 in several regions in the world. In this ecological study, data from www.google.com/covid19/mobility/ , ourworldindata.org and covid.saude.gov.br were combined. Countries with > 100 deaths and with a Healthcare Access and Quality Index of ≥ 67 were included. Data were preprocessed and analyzed using the difference between number of deaths/million between 2 regions and the difference between the percentage of staying at home. The analysis was performed using linear regression with special attention to residual analysis. After preprocessing the data, 87 regions around the world were included, yielding 3741 pairwise comparisons for linear regression analysis. Only 63 (1.6%) comparisons were significant. With our results, we were not able to explain if COVID-19 mortality is reduced by staying at home in ~ 98% of the comparisons after epidemiological weeks 9 to 34.
Collapse
|
26
|
Mathematical model of COVID-19 with comorbidity and controlling using non-pharmaceutical interventions and vaccination. NONLINEAR DYNAMICS 2021; 106:1213-1227. [PMID: 34031622 PMCID: PMC8133070 DOI: 10.1007/s11071-021-06517-w] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 05/04/2021] [Indexed: 05/06/2023]
Abstract
Pandemic is an unprecedented public health situation, especially for human beings with comorbidity. Vaccination and non-pharmaceutical interventions only remain extensive measures carrying a significant socioeconomic impact to defeating pandemic. Here, we formulate a mathematical model with comorbidity to study the transmission dynamics as well as an optimal control-based framework to diminish COVID-19. This encompasses modeling the dynamics of invaded population, parameter estimation of the model, study of qualitative dynamics, and optimal control problem for non-pharmaceutical interventions (NPIs) and vaccination events such that the cost of the combined measure is minimized. The investigation reveals that disease persists with the increase in exposed individuals having comorbidity in society. The extensive computational efforts show that mean fluctuations in the force of infection increase with corresponding entropy. This is a piece of evidence that the outbreak has reached a significant portion of the population. However, optimal control strategies with combined measures provide an assurance of effectively protecting our population from COVID-19 by minimizing social and economic costs.
Collapse
|
27
|
Threshold condition and non pharmaceutical interventions's control strategies for elimination of COVID-19. RESULTS IN PHYSICS 2021; 20:103698. [PMID: 36466743 PMCID: PMC9673771 DOI: 10.1016/j.rinp.2020.103698] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Revised: 12/03/2020] [Accepted: 12/04/2020] [Indexed: 05/23/2023]
Abstract
In this work we focus on the eradication of the COVID-19 infection with the help of almost Non Pharmaceutical Interventions(NPIs), using mathematical modelling. First the basic reproduction number R 0 is investigated. Then, on the basis of sensitivity test of R 0 , the most active/sensitive parameters are presented in detail. Non Pharmaceutical Interventions(NPIs) are applied to control the sensitive parameters. The major NPIs are, stay home (isolation), sanitizers (wash hands), Treatment of side effects of infection, like throat infection etc and face mask. These NPIs helps in mitigation and reducing the size of outbreak of the disease. Threshold condition for global stability of the disease free state is investigated.The NPI's are used in different ratios to formulate a strategy. The results of these strategies are validated using Matlab software.
Collapse
|