1
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Rejuan R, Aulisa E, Li W, Thompson T, Kumar S, Canic S, Wang Y. Validation of a Microfluidic Device Prototype for Cancer Detection and Identification: Circulating Tumor Cells Classification Based on Cell Trajectory Analysis Leveraging Cell-Based Modeling and Machine Learning. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING 2025; 41:e70037. [PMID: 40273905 DOI: 10.1002/cnm.70037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2024] [Revised: 03/15/2025] [Accepted: 03/28/2025] [Indexed: 04/26/2025]
Abstract
Microfluidic devices (MDs) present a novel method for detecting circulating tumor cells (CTCs), enhancing the process through targeted techniques and visual inspection. However, current approaches often yield heterogeneous CTC populations, necessitating additional processing for comprehensive analysis and phenotype identification. These procedures are often expensive, time-consuming, and need to be performed by skilled technicians. In this study, we investigate the potential of a cost-effective and efficient hyperuniform micropost MD approach for CTC classification. Our approach combines mathematical modeling of fluid-structure interactions in a simulated microfluidic channel with machine learning techniques. Specifically, we developed a cell-based modeling framework to assess CTC dynamics in erythrocyte-laden plasma flow, generating a large dataset of CTC trajectories that account for two distinct CTC phenotypes. Convolutional neural network (CNN) and recurrent neural network (RNN) were then employed to analyze the dataset and classify these phenotypes. The results demonstrate the potential effectiveness of the hyperuniform micropost MD design and analysis approach in distinguishing between different CTC phenotypes based on cell trajectory, offering a promising avenue for early cancer detection.
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Affiliation(s)
- Rifat Rejuan
- Department of Mathematics and Statistics, Texas Tech University, Lubbock, Texas, USA
| | - Eugenio Aulisa
- Department of Mathematics and Statistics, Texas Tech University, Lubbock, Texas, USA
| | - Wei Li
- Department of Chemical Engineering, Texas Tech University, Lubbock, Texas, USA
| | - Travis Thompson
- Department of Mathematics and Statistics, Texas Tech University, Lubbock, Texas, USA
| | - Sanjoy Kumar
- Department of Mathematics and Statistics, Texas Tech University, Lubbock, Texas, USA
| | - Suncica Canic
- Department of Mathematics, University of California Berkeley, Berkeley, California, USA
| | - Yifan Wang
- Department of Mathematics and Statistics, Texas Tech University, Lubbock, Texas, USA
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2
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Gural A, Pajić-Lijaković I, Barshtein G. Mechanical Stimulation of Red Blood Cells Aging: Focusing on the Microfluidics Application. MICROMACHINES 2025; 16:259. [PMID: 40141870 PMCID: PMC11945212 DOI: 10.3390/mi16030259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2025] [Revised: 02/23/2025] [Accepted: 02/24/2025] [Indexed: 03/28/2025]
Abstract
Human red blood cells (RBCs) are highly differentiated cells, essential in almost all physiological processes. During their circulation in the bloodstream, RBCs are exposed to varying levels of shear stress ranging from 0.1-10 Pa under physiological conditions to 50 Pa in arterial stenotic lesions. Moreover, the flow of blood through splenic red pulp and through artificial organs is associated with brief exposure to even higher levels of shear stress, reaching up to hundreds of Pa. As a result of this exposure, some properties of the cytosol, the cytoskeleton, and the cell membrane may be significantly affected. In this review, we aim to systematize the available information on RBC response to shear stress by focusing on reported changes in various red cell properties. We pay special attention to the results obtained using microfluidics, since these devices allow the researcher to accurately simulate blood flow conditions in the capillaries and spleen.
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Affiliation(s)
- Alexander Gural
- Blood Bank, Hadassah-Hebrew University Medical Center, Jerusalem 91120, Israel;
| | - Ivana Pajić-Lijaković
- Department of Chemical Engineering, Faculty of Technology and Metallurgy, University of Belgrade, 11000 Belgrade, Serbia;
| | - Gregory Barshtein
- Department of Biochemistry, The Faculty of Medicine, Hebrew University, Jerusalem 91120, Israel
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3
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Porcaro C, Saeedipour M. Unresolved RBCs: An upscaling strategy for the CFD-DEM simulation of blood flow with deformable cells. Comput Biol Med 2024; 181:109081. [PMID: 39208506 DOI: 10.1016/j.compbiomed.2024.109081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 08/05/2024] [Accepted: 08/25/2024] [Indexed: 09/04/2024]
Abstract
Numerical simulation of blood flow is a challenging topic due to the multiphase nature of this biological fluid. The choice of a specific method among the ones available in literature is often motivated by the physical scale of interest. Single-phase approximation allows for lower computational time, but does not consider this multiphase nature. Cell-level simulation, on the other hand, requires high computational resources and is limited to small scales. This work proposes a scale-up approach for cell-level simulation of blood flow, in the framework of unresolved CFD-DEM technique. This method offers the possibility to simulate hundreds of thousands of particles with limited computational effort, but requires specific models for fluid-particle interactions. Regarding blood flow, drag and lift force acting on the red blood cells (RBCs) are responsible for several macroscopic blood characteristics. Despite several correlations available for drag and lift force acting on rigid particles, specific force models for the simulation of deformable particles compatible with RBCs physics are missing. This study employs data obtained from cell-level simulations to derive equations then used in unresolved simulation of RBCs. The strategy followed during the modeling phase is presented, together with the model verification and validation. This approach returns satisfying results when used to simulate blood flow in large-scale channels. Up to half a million RBCs are considered, and computational effort is reported to allow a comparison with other existing methods. Future perspectives include further improvement of the model, such as a deeper understanding of particle-particle interactions.
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Affiliation(s)
- Carmine Porcaro
- Department of Particulate Flow Modelling, Johannes Kepler University, A-4040 Linz, Austria; Linz Institute of Technology (LIT), Johannes Kepler University, A-4040 Linz, Austria
| | - Mahdi Saeedipour
- Department of Particulate Flow Modelling, Johannes Kepler University, A-4040 Linz, Austria; Linz Institute of Technology (LIT), Johannes Kepler University, A-4040 Linz, Austria.
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4
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Shayor AA, Kabir ME, Rifath MSA, Rashid AB, Oh KW. A Synergistic Overview between Microfluidics and Numerical Research for Vascular Flow and Pathological Investigations. SENSORS (BASEL, SWITZERLAND) 2024; 24:5872. [PMID: 39338617 PMCID: PMC11435959 DOI: 10.3390/s24185872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2024] [Revised: 08/20/2024] [Accepted: 09/02/2024] [Indexed: 09/30/2024]
Abstract
Vascular diseases are widespread, and sometimes such life-threatening medical disorders cause abnormal blood flow, blood particle damage, changes to flow dynamics, restricted blood flow, and other adverse effects. The study of vascular flow is crucial in clinical practice because it can shed light on the causes of stenosis, aneurysm, blood cancer, and many other such diseases, and guide the development of novel treatments and interventions. Microfluidics and computational fluid dynamics (CFDs) are two of the most promising new tools for investigating these phenomena. When compared to conventional experimental methods, microfluidics offers many benefits, including lower costs, smaller sample quantities, and increased control over fluid flow and parameters. In this paper, we address the strengths and weaknesses of computational and experimental approaches utilizing microfluidic devices to investigate the rheological properties of blood, the forces of action causing diseases related to cardiology, provide an overview of the models and methodologies of experiments, and the fabrication of devices utilized in these types of research, and portray the results achieved and their applications. We also discuss how these results can inform clinical practice and where future research should go. Overall, it provides insights into why a combination of both CFDs, and experimental methods can give even more detailed information on disease mechanisms recreated on a microfluidic platform, replicating the original biological system and aiding in developing the device or chip itself.
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Affiliation(s)
- Ahmed Abrar Shayor
- Department of Mechanical Engineering, Khulna University of Engineering & Technology, Khulna 9203, Bangladesh
| | - Md Emamul Kabir
- Department of Mechanical Engineering, Khulna University of Engineering & Technology, Khulna 9203, Bangladesh
- Sensors and MicroActuators Learning Lab (SMALL), Department of Electrical Engineering, The State University of New York at Buffalo, Buffalo, NY 14260, USA
| | - Md Sartaj Ahamed Rifath
- Department of Mechanical Engineering, Khulna University of Engineering & Technology, Khulna 9203, Bangladesh
| | - Adib Bin Rashid
- Department of Industrial and Production Engineering, Military Institute of Science and Technology, Dhaka 1216, Bangladesh
| | - Kwang W Oh
- Sensors and MicroActuators Learning Lab (SMALL), Department of Electrical Engineering, The State University of New York at Buffalo, Buffalo, NY 14260, USA
- Department of Biomedical Engineering, The State University of New York at Buffalo, Buffalo, NY 14260, USA
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5
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Rejuan R, Aulisa E, Li W, Thompson T, Kumar S, Canic S, Wang Y. Validation of a Microfluidic Device Prototype for Cancer Detection and Identification: Circulating Tumor Cells Classification Based on Cell Trajectory Analysis Leveraging Cell-Based Modeling and Machine Learning. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.08.19.608572. [PMID: 39229148 PMCID: PMC11370430 DOI: 10.1101/2024.08.19.608572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/05/2024]
Abstract
Microfluidic devices (MDs) present a novel method for detecting circulating tumor cells (CTCs), enhancing the process through targeted techniques and visual inspection. However, current approaches often yield heterogeneous CTC populations, necessitating additional processing for comprehensive analysis and phenotype identification. These procedures are often expensive, time-consuming, and need to be performed by skilled technicians. In this study, we investigate the potential of a cost-effective and efficient hyperuniform micropost MD approach for CTC classification. Our approach combines mathematical modeling of fluid-structure interactions in a simulated microfluidic channel with machine learning techniques. Specifically, we developed a cell-based modeling framework to assess CTC dynamics in erythrocyte-laden plasma flow, generating a large dataset of CTC trajectories that account for two distinct CTC phenotypes. Convolutional Neural Network (CNN) and Recurrent Neural Network (RNN) were then employed to analyze the dataset and classify these phenotypes. The results demonstrate the potential effectiveness of the hyperuniform micropost MD design and analysis approach in distinguishing between different CTC phenotypes based on cell trajectory, offering a promising avenue for early cancer detection.
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Affiliation(s)
- Rifat Rejuan
- Department of Mathematics and Statistics, Texas Tech University, Lubbock, TX, USA
| | - Eugenio Aulisa
- Department of Mathematics and Statistics, Texas Tech University, Lubbock, TX, USA
| | - Wei Li
- Department of Chemical Engineering, Texas Tech University, Lubbock, TX, USA
| | - Travis Thompson
- Department of Mathematics and Statistics, Texas Tech University, Lubbock, TX, USA
| | | | - Suncica Canic
- Department of Mathematics, University of California Berkeley, Berkeley, CA, USA
| | - Yifan Wang
- Department of Mathematics and Statistics, Texas Tech University, Lubbock, TX, USA
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Musharaf HM, Roshan U, Mudugamuwa A, Trinh QT, Zhang J, Nguyen NT. Computational Fluid-Structure Interaction in Microfluidics. MICROMACHINES 2024; 15:897. [PMID: 39064408 PMCID: PMC11278627 DOI: 10.3390/mi15070897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Revised: 07/02/2024] [Accepted: 07/04/2024] [Indexed: 07/28/2024]
Abstract
Micro elastofluidics is a transformative branch of microfluidics, leveraging the fluid-structure interaction (FSI) at the microscale to enhance the functionality and efficiency of various microdevices. This review paper elucidates the critical role of advanced computational FSI methods in the field of micro elastofluidics. By focusing on the interplay between fluid mechanics and structural responses, these computational methods facilitate the intricate design and optimisation of microdevices such as microvalves, micropumps, and micromixers, which rely on the precise control of fluidic and structural dynamics. In addition, these computational tools extend to the development of biomedical devices, enabling precise particle manipulation and enhancing therapeutic outcomes in cardiovascular applications. Furthermore, this paper addresses the current challenges in computational FSI and highlights the necessity for further development of tools to tackle complex, time-dependent models under microfluidic environments and varying conditions. Our review highlights the expanding potential of FSI in micro elastofluidics, offering a roadmap for future research and development in this promising area.
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Affiliation(s)
- Hafiz Muhammad Musharaf
- Queensland Micro and Nanotechnology Centre, Griffith University, Brisbane, QLD 4111, Australia; (H.M.M.); (U.R.); (A.M.); (Q.T.T.)
| | - Uditha Roshan
- Queensland Micro and Nanotechnology Centre, Griffith University, Brisbane, QLD 4111, Australia; (H.M.M.); (U.R.); (A.M.); (Q.T.T.)
| | - Amith Mudugamuwa
- Queensland Micro and Nanotechnology Centre, Griffith University, Brisbane, QLD 4111, Australia; (H.M.M.); (U.R.); (A.M.); (Q.T.T.)
| | - Quang Thang Trinh
- Queensland Micro and Nanotechnology Centre, Griffith University, Brisbane, QLD 4111, Australia; (H.M.M.); (U.R.); (A.M.); (Q.T.T.)
| | - Jun Zhang
- Queensland Micro and Nanotechnology Centre, Griffith University, Brisbane, QLD 4111, Australia; (H.M.M.); (U.R.); (A.M.); (Q.T.T.)
- School of Engineering and Built Environment, Griffith University, Brisbane, QLD 4111, Australia
| | - Nam-Trung Nguyen
- Queensland Micro and Nanotechnology Centre, Griffith University, Brisbane, QLD 4111, Australia; (H.M.M.); (U.R.); (A.M.); (Q.T.T.)
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Imtiaz N, Poskus MD, Stoddard WA, Gaborski TR, Day SW. Empirical and Computational Evaluation of Hemolysis in a Microfluidic Extracorporeal Membrane Oxygenator Prototype. MICROMACHINES 2024; 15:790. [PMID: 38930760 PMCID: PMC11205701 DOI: 10.3390/mi15060790] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Revised: 06/07/2024] [Accepted: 06/10/2024] [Indexed: 06/28/2024]
Abstract
Microfluidic devices promise to overcome the limitations of conventional hemodialysis and oxygenation technologies by incorporating novel membranes with ultra-high permeability into portable devices with low blood volume. However, the characteristically small dimensions of these devices contribute to both non-physiologic shear that could damage blood components and laminar flow that inhibits transport. While many studies have been performed to empirically and computationally study hemolysis in medical devices, such as valves and blood pumps, little is known about blood damage in microfluidic devices. In this study, four variants of a representative microfluidic membrane-based oxygenator and two controls (positive and negative) are introduced, and computational models are used to predict hemolysis. The simulations were performed in ANSYS Fluent for nine shear stress-based parameter sets for the power law hemolysis model. We found that three of the nine tested parameters overpredict (5 to 10×) hemolysis compared to empirical experiments. However, three parameter sets demonstrated higher predictive accuracy for hemolysis values in devices characterized by low shear conditions, while another three parameter sets exhibited better performance for devices operating under higher shear conditions. Empirical testing of the devices in a recirculating loop revealed levels of hemolysis significantly lower (<2 ppm) than the hemolysis ranges observed in conventional oxygenators (>10 ppm). Evaluating the model's ability to predict hemolysis across diverse shearing conditions, both through empirical experiments and computational validation, will provide valuable insights for future micro ECMO device development by directly relating geometric and shear stress with hemolysis levels. We propose that, with an informed selection of hemolysis parameters based on the shear ranges of the test device, computational modeling can complement empirical testing in the development of novel high-flow blood-contacting microfluidic devices, allowing for a more efficient iterative design process. Furthermore, the low device-induced hemolysis measured in our study at physiologically relevant flow rates is promising for the future development of microfluidic oxygenators and dialyzers.
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Affiliation(s)
- Nayeem Imtiaz
- Rochester Institute of Technology, Kate Gleason College of Engineering, Rochester, NY 14623, USA; (N.I.); (W.A.S.); (T.R.G.)
| | - Matthew D. Poskus
- Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA 15261, USA;
| | - William A. Stoddard
- Rochester Institute of Technology, Kate Gleason College of Engineering, Rochester, NY 14623, USA; (N.I.); (W.A.S.); (T.R.G.)
| | - Thomas R. Gaborski
- Rochester Institute of Technology, Kate Gleason College of Engineering, Rochester, NY 14623, USA; (N.I.); (W.A.S.); (T.R.G.)
| | - Steven W. Day
- Rochester Institute of Technology, Kate Gleason College of Engineering, Rochester, NY 14623, USA; (N.I.); (W.A.S.); (T.R.G.)
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8
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Rydquist G, Esmaily M. Analysis of the Suitability of an Effective Viscosity to Represent Interactions Between Red Blood Cells in Shear Flow. J Biomech Eng 2024; 146:021007. [PMID: 38071488 PMCID: PMC10750787 DOI: 10.1115/1.4064213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 12/03/2023] [Indexed: 12/21/2023]
Abstract
Many methods to computationally predict red blood cell damage have been introduced, and among these are Lagrangian methods that track the cells along their pathlines. Such methods typically do not explicitly include cell-cell interactions. Due to the high volume fraction of red blood cells (RBCs) in blood, these interactions could impact cell mechanics and thus the amount of damage caused by the flow. To investigate this question, cell-resolved simulations of red blood cells in shear flow were performed for multiple interacting cells, as well as for single cells in unbounded flow at an effective viscosity. Simulations run without adjusting the bulk viscosity produced larger errors unilaterally and were not considered further for comparison. We show that a periodic box containing at least 8 cells and a spherical harmonic of degree larger than 10 are necessary to produce converged higher-order statistics. The maximum difference between the single-cell and multiple-cell cases in terms of peak strain was 3.7%. To achieve this, one must use the whole blood viscosity and average over multiple cell orientations when adopting a single-cell simulation approach. The differences between the models in terms of average strain were slightly larger (maximum difference of 6.9%). However, given the accuracy of the single-cell approach in predicting the maximum strain, which is useful in hemolysis prediction, and its computational cost that is orders of magnitude less than the multiple-cell approach, one may use it as an affordable cell-resolved approach for hemolysis prediction.
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Affiliation(s)
- Grant Rydquist
- Sibley School of Mechanical and Aerospace Engineering, Cornell University, Ithaca, NY 14850
| | - Mahdi Esmaily
- Sibley School of Mechanical and Aerospace Engineering, Cornell University, Ithaca, NY 14850
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