From local spectral species to global spectral communities: A benchmark for ecosystem diversity estimate by remote sensing

New perspective for the upscaling of plant functional response to flooding stress in salt marshes using remote sensing

Understanding the response of salt marshes to flooding is crucial to foresee the fate of these fragile ecosystems, requiring an upscaling approach. In this study we related plant species and community response to multispectral indices aiming at parsing the power of remote sensing to detect the environmental stress due to flooding in lagoon salt marshes. We studied the response of Salicornia fruticosa (L.) L. and associated plant community along a flooding and soil texture gradient in nine lagoon salt marshes in northern Italy. We considered community (i.e., species richness, dry biomass, plant height, dry matter content) and individual traits (i.e., annual growth, pigments, and secondary metabolites) to analyze the effect of flooding depth and its interplay with soil properties. We also carried out a drone multispectral survey, to obtain remote sensing-derived vegetation indices for the upscaling of plant responses to flooding. Plant diversity, biomass and growth all declined as inundation depth increased. The increase of soil clay content exacerbated flooding stress shaping S. fruticosa growth and physiological responses. Multispectral indices were negatively related with flooding depth. We found key species traits rather than other community traits to better explain the variance of multispectral indices. In particular stem length and pigment content (i.e., betacyanin, carotenoids) were more effective than other community traits to predict the spectral indices in an upscaling perspective of salt marsh response to flooding. We proved multispectral indices to potentially capture plant growth and plant eco-physiological responses to flooding at the large scale. These results represent a first fundamental step to establish long term spatial monitoring of marsh acclimation to sea level rise with remote sensing. We further stressed the importance to focus on key species traits as mediators of the entire ecosystem changes, in an ecological upscaling perspective.

LiDAR GEDI derived tree canopy height heterogeneity reveals patterns of biodiversity in forest ecosystems

The "Height Variation Hypothesis" is an indirect approach used to estimate forest biodiversity through remote sensing data, stating that greater tree height heterogeneity (HH) measured by CHM LiDAR data indicates higher forest structure complexity and tree species diversity. This approach has traditionally been analyzed using only airborne LiDAR data, which limits its application to the availability of the dedicated flight campaigns. In this study we analyzed the relationship between tree species diversity and HH, calculated with four different heterogeneity indices using two freely available CHMs derived from the new space-borne GEDI LiDAR data. The first, with a spatial resolution of 30 m, was produced through a regression tree machine learning algorithm integrating GEDI LiDAR data and Landsat optical information. The second, with a spatial resolution of 10 m, was created using Sentinel-2 images and a deep learning convolutional neural network. We tested this approach separately in 30 forest plots situated in the northern Italian Alps, in 100 plots in the forested area of Traunstein (Germany) and successively in all the 130 plots through a cross-validation analysis. Forest density information was also included as influencing factor in a multiple regression analysis. Our results show that the GEDI CHMs can be used to assess biodiversity patterns in forest ecosystems through the estimation of the HH that is correlated to the tree species diversity. However, the results also indicate that this method is influenced by different factors including the GEDI CHMs dataset of choice and their related spatial resolution, the heterogeneity indices used to calculate the HH and the forest density. Our finding suggest that GEDI LIDAR data can be a valuable tool in the estimation of forest tree heterogeneity and related tree species diversity in forest ecosystems, which can aid in global biodiversity estimation.

Defining biologically relevant and hierarchically nested population units to inform wildlife management

Wildlife populations are increasingly affected by natural and anthropogenic changes that negatively alter biotic and abiotic processes at multiple spatiotemporal scales and therefore require increased wildlife management and conservation efforts. However, wildlife management boundaries frequently lack biological context and mechanisms to assess demographic data across the multiple spatiotemporal scales influencing populations. To address these limitations, we developed a novel approach to define biologically relevant subpopulations of hierarchically nested population levels that could facilitate managing and conserving wildlife populations and habitats. Our approach relied on the Spatial "K"luster Analysis by Tree Edge Removal clustering algorithm, which we applied in an agglomerative manner (bottom-to-top). We modified the clustering algorithm using a workflow and population structure tiers from least-cost paths, which captured biological inferences of habitat conditions (functional connectivity), dispersal capabilities (potential connectivity), genetic information, and functional processes affecting movements. The approach uniquely included context of habitat resources (biotic and abiotic) summarized at multiple spatial scales surrounding locations with breeding site fidelity and constraint-based rules (number of sites grouped and population structure tiers). We applied our approach to greater sage-grouse (Centrocercus urophasianus), a species of conservation concern, across their range within the western United States. This case study produced 13 hierarchically nested population levels (akin to cluster levels, each representing a collection of subpopulations of an increasing number of breeding sites). These closely approximated population closure at finer ecological scales (smaller subpopulation extents with fewer breeding sites; cluster levels ≥2), where >92% of individual sage-grouse's time occurred within their home cluster. With available population monitoring data, our approaches can support the investigation of factors affecting population dynamics at multiple scales and assist managers with making informed, targeted, and cost-effective decisions within an adaptive management framework. Importantly, our approach provides the flexibility of including species-relevant context, thereby supporting other wildlife characterized by site fidelity.

Double down on remote sensing for biodiversity estimation: a biological mindset

In the light of unprecedented planetary changes in biodiversity, real-time and accurate ecosystem and biodiversity assessments are becoming increasingly essential for informing policy and sustainable development. Biodiversity monitoring is a challenge, especially for large areas such as entire continents. Nowadays, spaceborne and airborne sensors provide information that incorporate wavelengths that cannot be seen nor imagined with the human eye. This is also now accomplished at unprecedented spatial resolutions, defined by the pixel size of images, achieving less than a meter for some satellite images and just millimeters for airborne imagery. Thanks to different modeling techniques, it is now possible to study functional diversity changes over different spatial and temporal scales. At the heart of this unifying framework are the “spectral species”—sets of pixels with a similar spectral signal—and their variability over space. The aim of this paper is to summarize the power of remote sensing for directly estimating plant species diversity, particularly focusing on the spectral species concept.

The Spectral Species Concept in Living Color

Biodiversity monitoring is an almost inconceivable challenge at the scale of the entire Earth. The current (and soon to be flown) generation of spaceborne and airborne optical sensors (i.e., imaging spectrometers) can collect detailed information at unprecedented spatial, temporal, and spectral resolutions. These new data streams are preceded by a revolution in modeling and analytics that can utilize the richness of these datasets to measure a wide range of plant traits, community composition, and ecosystem functions. At the heart of this framework for monitoring plant biodiversity is the idea of remotely identifying species by making use of the 'spectral species' concept. In theory, the spectral species concept can be defined as a species characterized by a unique spectral signature and thus remotely detectable within pixel units of a spectral image. In reality, depending on spatial resolution, pixels may contain several species which renders species-specific assignment of spectral information more challenging. The aim of this paper is to review the spectral species concept and relate it to underlying ecological principles, while also discussing the complexities, challenges and opportunities to apply this concept given current and future scientific advances in remote sensing.

Remote Sensing and Phytoecological Methods for Mapping and Assessing Potential Ecosystem Services of the Ouled Hannèche Forest in the Hodna Mountains, Algeria

Regardless of their biogeographic origins or degree of artificialization, the world’s forests are a source of a wide range of ecosystem services (ES). However, the quality and quantity of these services depend on the type of forest studied and its phytogeographic context. Our objective is to transpose the concept of ES, in particular, the assessment of forest ES, to the specific Mediterranean context of the North African mountains, where this issue is still in its infancy and where access to the data needed for assessment remains difficult. Our work presents an introductory approach, allowing us to set up methodological and scientific milestones based on open-access remote sensing data and already tested geospatial processing associated with phytoecological surveys to assess the ES provided by forests in an Algerian study area. Specifically, several indicators used to assess (both qualitatively and quantitatively) the potential ES of the Ouled Hannèche forest, a forest located in the Hodna Mountains, are derived from LANDSAT 8 OLI images from 2017 and an ALOS AW3D30 DSM. The qualitative ES typology is jointly based on an SVM classification of topographically corrected LANDSAT images and a geomorphic-type classification using the geomorphon method. NDVI is a quantitative estimator of many plant ecosystem functions related to ES. It highlights the variations in the provision of ES according to the types of vegetation formations present. It serves as a support for estimating spectral heterogeneity through Rao’s quadratic entropy, which is considered a relative indicator of biodiversity at the landscape scale. The two previous variables (the multitemporal NDVI and Rao’s Q), completed by the Shannon entropy method applied to the geomorphon classes as a proxy for topo-morphological heterogeneity, constitute the input variables of a quantitative map of the potential supply of ES in the forest determined by Spatial Multicriteria Analysis (SMCA). Ultimately, our results serve as a useful basis for land-use planning and biodiversity conservation.

Impact of Volcanic Sulfur Emissions on the Pine Forest of La Palma, Spain

In autumn 2021, the largest volcanic eruption on the island of La Palma in historic records took place. The Canary Islands are of volcanic origin and eruptions have always constituted part of their natural disturbance regime. Until recently, their impacts could not be directly observed and studied. Influence of the emission of phytotoxic gases on biodiversity and ecosystem dynamics was hitherto unknown. The recent eruption is still being intensely monitored. We used Sentinel-2 remote sensing data to analyze the spatial extent and intensity of the impact related to sulfuric emissions, aiming to understand the damage patterns in Canary pine forest. The emissions damaged 10% of that forest and affected 5.3% of the Natura 2000 protected areas. We concluded that this is largely due to the toxic effects of the enormous emissions of SO2. We found a clear correlation between the change in the normalized difference vegetation index (NDVI) and distance from the eruption. This pattern was weakly anisotropic, with stronger damage in southern directions. Counteracting effects, such as ash deposition, were largely excluded by combining NDVI change detection with tree cover density. We expect that vegetation damage will be transient. P. canariensis can resprout after forest fires, where most leaves are lost. Consequently, our assessment can serve as a reference for future ecosystem regeneration.

A Remote Sensing Approach to Understanding Patterns of Secondary Succession in Tropical Forest

Monitoring biodiversity on a global scale is a major challenge for biodiversity conservation. Field assessments commonly used to assess patterns of biodiversity and habitat condition are costly, challenging, and restricted to small spatial scales. As ecosystems face increasing anthropogenic pressures, it is important that we find ways to assess patterns of biodiversity more efficiently. Remote sensing has the potential to support understanding of landscape-level ecological processes. In this study, we considered cacao agroforests at different stages of secondary succession, and primary forest in the Northern Range of Trinidad, West Indies. We assessed changes in tree biodiversity over succession using both field data, and data derived from remote sensing. We then evaluated the strengths and limitations of each method, exploring the potential for expanding field data by using remote sensing techniques to investigate landscape-level patterns of forest condition and regeneration. Remote sensing and field data provided different insights into tree species compositional changes, and patterns of alpha- and beta-diversity. The results highlight the potential of remote sensing for detecting patterns of compositional change in forests, and for expanding on field data in order to better understand landscape-level patterns of forest diversity.

Measuring Alpha and Beta Diversity by Field and Remote-Sensing Data: A Challenge for Coastal Dunes Biodiversity Monitoring

Combining field collected and remotely sensed (RS) data represents one of the most promising approaches for an extensive and up-to-date ecosystem assessment. We investigated the potential of the so called spectral variability hypothesis (SVH) in linking field-collected and remote-sensed data in Mediterranean coastal dunes and explored if spectral diversity provides reliable information to monitor floristic diversity, as well as the consistency of such information in altered ecosystems due to plant invasions. We analyzed alpha diversity and beta diversity, integrating floristic field and Remote-Sensing PlanetScope data in the Tyrrhenian coast (Central Italy). We explored the relationship among alpha field diversity (species richness, Shannon index, inverse Simpson index) and spectral variability (distance from the spectral centroid index) through linear regressions. For beta diversity, we implemented a distance decay model (DDM) relating field pairwise (Jaccard similarities index, Bray–Curtis similarities index) and spectral pairwise (Euclidean distance) measures. We observed a positive relationship between alpha diversity and spectral heterogeneity with richness reporting the higher R score. As for DDM, we found a significant relationship between Bray–Curtis floristic similarity and Euclidean spectral distance. We provided a first assessment of the relationship between floristic and spectral RS diversity in Mediterranean coastal dune habitats (i.e., natural or invaded). SVH provided evidence about the potential of RS for estimating diversity in complex and dynamic landscapes.

Earth Observation and Biodiversity Big Data for Forest Habitat Types Classification and Mapping

In the light of the “Biological Diversity” concept, habitats are cardinal pieces for biodiversity quantitative estimation at a local and global scale. In Europe EUNIS (European Nature Information System) is a system tool for habitat identification and assessment. Earth Observation (EO) data, which are acquired by satellite sensors, offer new opportunities for environmental sciences and they are revolutionizing the methodologies applied. These are providing unprecedented insights for habitat monitoring and for evaluating the Sustainable Development Goals (SDGs) indicators. This paper shows the results of a novel approach for a spatially explicit habitat mapping in Italy at a national scale, using a supervised machine learning model (SMLM), through the combination of vegetation plot database (as response variable), and both spectral and environmental predictors. The procedure integrates forest habitat data in Italy from the European Vegetation Archive (EVA), with Sentinel-2 imagery processing (vegetation indices time series, spectral indices, and single bands spectral signals) and environmental data variables (i.e., climatic and topographic), to parameterize a Random Forests (RF) classifier. The obtained results classify 24 forest habitats according to the EUNIS III level: 12 broadleaved deciduous (T1), 4 broadleaved evergreen (T2) and eight needleleaved forest habitats (T3), and achieved an overall accuracy of 87% at the EUNIS II level classes (T1, T2, T3), and an overall accuracy of 76.14% at the EUNIS III level. The highest overall accuracy value was obtained for the broadleaved evergreen forest equal to 91%, followed by 76% and 68% for needleleaved and broadleaved deciduous habitat forests, respectively. The results of the proposed methodology open the way to increase the EUNIS habitat categories to be mapped together with their geographical extent, and to test different semi-supervised machine learning algorithms and ensemble modelling methods.