Predicting potential occurrence of pine wilt disease based on environmental factors in South Korea using machine learning algorithms

Research on Pine Wilt Disease Spread Prediction Based on an Improved Light Gradient Boosting Machine Model

Pine wilt disease has caused significant damage to China's ecological and financial resources. To prevent its further spread across the country, proactive control measures are necessary. Given the low accuracy of traditional models, we have employed an enhanced light gradient boosting machine (LGBM) model to predict the development trend of pine wilt disease in China, providing a theoretical basis for its monitoring and prevention. We collected and organized data on the occurrence points of pine wilt disease at the county level in China. By incorporating anthropogenic factors such as the volume of pine wood imports from 2017 to 2022, the density of graded roads, the number of adjacent counties, and the presence of wood processing factories, as well as natural factors such as temperature, humidity, and wind speed, we employed Pearson correlation and LGBM model's feature importance analysis to select the 17 most significant influencing factors. Spatial analysis was conducted on the epidemic subcompartments (a divisional unit smaller than a township) of pine wilt disease for 2022 and 2023, revealing the distribution patterns of epidemic subcompartments within 2 km of roads and the spatial relationships between new and old epidemic subcompartments. We improved the LGBM model using a Bayesian algorithm, sparrow search algorithm, and hunter-prey optimization algorithm. By comparison, the enhanced model was validated to outperform in terms of accuracy, precision, recall, sensitivity, and specificity. Based on the results of correlation analysis and spatial analysis, an enhanced model was used to predict the emergence of pine wilt disease in new counties and districts in the future. Currently, pine wilt disease is primarily concentrated in the central-southern and northeastern provinces of China. Predictions indicate that the disease will further spread to the northeastern and southern regions of the country in the future.

Predicting habitat suitability of Illicium griffithii under climate change scenarios using an ensemble modeling approach

Climate change is the most significant threat to global biodiversity, risking extinction for many species due to their limited adaptability to rapidly changing environmental conditions, such as temperature, precipitation, and other climate variables. Illicium griffithii, an endangered tree with ecological and medicinal value, remains understudied, particularly in Arunachal Pradesh. The aim of the study is to identify key environmental variables influencing the current distribution of I. griffithii and to predict the potential distribution under current and future climatic scenarios (SSP245 and SSP585). We used an ensemble modeling approach that integrates five species distribution models (SDMs). After multicollinearity test, we utilized fifteen environmental variables including bioclimatic variables, soil properties, topographical variables, and evapotranspiration to predict the potential distribution of I. griffithii. The study revealed that the current distribution is predominantly influenced by isothermality, nitrogen content at 0-5 cm depth, clay content at 0-5 cm depth, and seasonality of precipitation, with a total contribution rate of 42.6%. The ensemble model performed robustly and found to be excellent performance based on AUC of 0.94 and TSS of 0.83. The total highly suitable area for I. griffithii spans 722.72 km2 in the current scenario, primarily located in West Kameng, Tawang, and East Kameng districts. West Kameng stands out as the largest high-suitability area, which covers 592.83 km2 and contributing a substantial 82.03% of the total suitable area. However, under the SSP585 future climate scenario (2041-2060), projections reveal a concerning decline in highly suitable areas. The area is expected to shrink by over 5.05%, decreasing from 722.72 to 686.25 km2. The results have highlighted the vulnerability of I. griffithii under future climatic scenario. Hence, forest managers should prioritize conserving suitable habitats in West Kameng, Tawang, and East Kameng districts of Arunachal Pradesh by implementing habitat restoration, assisted migration and ex situ conservation strategies that can mitigate climate change impacts.

Selection of climate variables in ant species distribution models: case study in South Korea

The selection of explanatory variables is important in modeling prediction of changes in species distribution in response to climate change. In this study, we evaluated the importance of variable selection in species distribution models. We compared two different types of models for predicting the distribution of ant species: temperature-only and both temperature and precipitation. Ants were collected at 343 forest sites across South Korea from 2006 through 2009. We used a generalized additive model (GAM) to predict the future distribution of 16 species that showed significant responses to changes in climatic factors (temperature and/or precipitation). Four types of GAMs were constructed: temperature, temperature with interaction of precipitation, temperature and precipitation without interaction, and temperature and precipitation with interaction. Most species displayed similar results between the temperatureonly and the temperature and precipitation models. The results for predicted changes in species richness were different from the temperature-only model. This indicates higher uncertainty in the prediction of species richness, which is obtained by combining the prediction results of distribution change for each species, than in the prediction of distribution change. The turnover rate of the ant assemblages was predicted to increase with decreases in temperature and increases in elevation, which was consistent with other studies. Finally, our results showed that the prediction of the distribution or diversity of organisms responding to climate change is uncertain because of the high variability of the model outputs induced by the variables used in the models.

Assessing potential European areas of Pierce's disease mediated by insect vectors by using spatial ensemble model

Pierce's disease (PD) is a serious threat to grape production in Europe. This disease is caused by Xylella fastidiosa and is mediated by insect vectors, suggesting its high potential for spread and necessity for early monitoring. In this study, hence, potential distribution of Pierce's disease varied with climate change and was spatially evaluated in Europe using ensemble species distribution modeling. Two models of X. fastidiosa and three major insect vectors (Philaenus spumarius, Neophilaenus campestris, and Cicadella viridis) were developed using CLIMEX and MaxEnt. The consensus areas of the disease and insect vectors, along with host distribution, were evaluated using ensemble mapping to identify high-risk areas for the disease. Our predictions showed that the Mediterranean region would be the most vulnerable to Pierce's disease, and the high-risk area would increase three-fold due to climate change under the influence of N. campestris distribution. This study demonstrated a methodology for species distribution modeling specific to diseases and vectors while providing results that could be used for monitoring Pierce's disease by simultaneously considering the disease agent, vectors, and host distribution.

Interpretable machine learning approach to analyze the effects of landscape and meteorological factors on mosquito occurrences in Seoul, South Korea

Mosquitoes are the underlying cause of various public health and economic problems. In this study, patterns of mosquito occurrence were analyzed based on landscape and meteorological factors in the metropolitan city of Seoul. We evaluated the influence of environmental factors on mosquito occurrence through the interpretation of prediction models with a machine learning algorithm. Through hierarchical cluster analysis, the study areas were classified into waterside and non-waterside areas, according to the landscape patterns. The mosquito occurrence was higher in the waterside area, and mosquito abundance was negatively affected by rainfall at the waterside. The mosquito occurrence was predicted in each cluster area based on the landscape and cumulative meteorological variables using a random forest algorithm. Both models exhibited good performance (both accuracy and AUROC > 0.8) in predicting the level of mosquito occurrence. The embedded relationship between the mosquito occurrence and the environmental factors in the models was explained using the Shapley additive explanation method. According to the variable importance and the partial dependence plots for each model, the waterside area was more influenced by the meteorological and land cover variables than the non-waterside area. Therefore, mosquito control strategies should consider the effects of landscape and meteorological conditions, including the temperature, rainfall, and the landscape heterogeneity. The present findings can contribute to the development of mosquito forecasting systems in metropolitan cities for the promotion of public health.

Climate Change Influences the Spread of African Swine Fever Virus

Climate change is an inevitable and urgent issue in the current world. African swine fever virus (ASFV) is a re-emerging viral animal disease. This study investigates the quantitative association between climate change and the potential spread of ASFV to a global extent. ASFV in wild boar outbreak locations recorded from 1 January 2019 to 29 July 2022 were sampled and investigated using the ecological distribution tool, the Maxent model, with WorldClim bioclimatic data as the predictor variables. The future impacts of climate change on ASFV distribution based on the model were scoped with Representative Concentration Pathways (RCP 2.6, 4.5, 6.0, and 8.5) scenarios of Coupled Model Intercomparison Project 5 (CMIP5) bioclimatic data for 2050 and 2070. The results show that precipitation of the driest month (Bio14) was the highest contributor, and annual mean temperature (Bio1) was obtained as the highest permutation importance variable on the spread of ASFV. Based on the analyzed scenarios, we found that the future climate is favourable for ASFV disease; only quantitative ratios are different and directly associated with climate change. The current study could be a reference material for wildlife health management, climate change issues, and World Health Organization sustainability goal 13: climate action.

Simulating Pine Wilt Disease Dispersal With an Individual-Based Model Incorporating Individual Movement Patterns of Vector Beetles

Individual movements of the insect vector pine sawyer beetles were incorporated into an individual-based model (IBM) to elucidate the dispersal of pine wilt disease (PWD) and demonstrate the effects of control practices. The model results were compared with the spatial data of infested pine trees in the Gijang-gun area of Busan, Republic of Korea. Step functions with long- and middle-distance movements of individual beetles effectively established symptomatic and asymptomatic trees for the dispersal of PWD. Pair correlations and pairwise distances were suitable for evaluating PWD dispersal between model results and field data at short and long scales, respectively. The accordance between model and field data was observed in infestation rates at 0.08 and 0.09 and asymptomatic rates at 0.16-0.17 for disease dispersal. Eradication radii longer than 20 m would effectively control PWD dispersal for symptomatic transmission and 20-40 m for asymptomatic transmission. However, the longer eradication radii were more effective at controlling PWD. Therefore, to maximize control effects, a longer radius of at least 40 m is recommended for clear-cutting eradication. The IBM of individual movement patterns provided practical information on interlinking the levels of individuals and populations and could contribute to the monitoring and management of forest pests where individual movement is important for population dispersal.

Risk Prediction and Variable Analysis of Pine Wilt Disease by a Maximum Entropy Model

Pine wilt disease (PWD) has caused a huge damage to pine forests. PWD is mainly transmitted by jumping diffusion, affected by insect vectors and human activities. Since the results of climate change, pine wood nematode (PWN—Bursaphelenchus xylophilus) has begun invading the temperate zones and higher elevation area. In this situation, predicting the distribution of PWD is an important part of the prevention and control of the epidemic situation. The research established the Maxent model to conduct a multi-angle, fine-scale prediction on the risk distribution of PWD. We adjusted two parameters, regularization multiplier (RM) and feature combination (FC), to optimize the model. Influence factors were selected and divided into natural, landscape, and human variables, according to the physical characteristics and spread rules of PWD. The middle-suitability regions and high-suitability regions are distributed in a Y-shape, and divided the study area into three parts. The high-suitability areas are concentrated in the region with high temperature, low elevation, and intensive precipitation. Among the selected variables, natural factors still play the most important role in the distribution of the disease, and human factors and landscape factors are also worked well. The permutation importance of factors is different due to differences in climate and other conditions in different regions. The multi-angle, fine-scale model can help provide useful information for effective control and tactical management of PWD.

Spatiotemporal Dynamics and Factors Driving the Distributions of Pine Wilt Disease-Damaged Forests in China

Many forests have suffered serious economic losses and ecological consequences of pine wilt disease (PWD) outbreaks. Climate change and human activities could accelerate the distribution of PWD, causing the exponential expansion of damaged forest areas in China. However, few studies have analyzed the spatiotemporal dynamics and the factors driving the distribution of PWD-damaged forests using continuous records of long-term damage, focusing on short-term environmental factors that influence multiple PWD outbreaks. We used a maximum entropy (MaxEnt) model that incorporated annual meteorological and human activity factors, as well as temporal dependence (the PWD distribution in the previous year), to determine the contributions of environmental factors to the annual distribution of PWD-damaged forests in the period 1982–2020. Overall, the MaxEnt showed good performance in modeling the PWD-damaged forest distributions between 1982 and 2020. Our results indicate that (i) the temporal lag dependence term for the presence/absence of PWD was the best predictor of the distribution of PWD-damaged forests; and (ii) Bio14 (precipitation in the driest month) was the most important meteorological factor for affecting the PWD-damaged forests. These results are essential to understanding the factors governing the distribution of PWD-damaged forests, which is important for forest management and pest control worldwide.