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Huang CC, Pan SC, Chen PC, Guo YL. Taiwan population-based epigenetic clocks and their application to long-term air pollution exposure. ENVIRONMENTAL RESEARCH 2025; 277:121542. [PMID: 40187398 DOI: 10.1016/j.envres.2025.121542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2024] [Revised: 03/25/2025] [Accepted: 04/03/2025] [Indexed: 04/07/2025]
Abstract
Most epigenetic clocks have been developed in populations of European or Hispanic descent; therefore, population-specific models are needed for Asian cohorts to enhance predictive accuracy and generalizability. This study aims to develop epigenetic clocks in a Taiwanese cohort and examine the association between long-term air pollution exposure and epigenetic age acceleration (EAA). The Taiwan Biobank (TWB) has been recruiting community-based adults aged 30-70 years since 2012, enrolling 173,806 participants by the end of 2022. Among them, 2,469 participants were selected for serum DNA methylation (DNAm) analysis. Epigenetic ages were estimated using penalized elastic net regression, with residuals defined as TWB-based epigenetic age acceleration (TWBEAA) and healthy-subset-based acceleration (TWBhEAA). Additionally, four previously established EAAs were obtained using Horvath's online DNA Methylation Age Calculator: DNAmEAA, DNAmSBEAA, PhenoEAA, and GrimEAA. Air pollution exposure levels at participants' residential townships were estimated from pre-1 day to pre-1 year using a kriging-based spatial interpolation method. Associations were assessed using multiple linear regression models, with robustness verified through Bayesian Kernel Machine Regression (BKMR). The TWBAge (325 CpG sites) and TWBhAge (179 CpG sites) prediction models demonstrated high accuracy (R2 = 0.95) in predicting chronological age. In the single-pollutant model, pre-1 year PM2.5 exposure was significantly associated with TWBhEAA (β = 0.67 [0.14-1.19], year) and DNAmEAA (β = 0.93 [0.03-1.83], year), while O3 exposure showed a positive association with DNAmSBEAA (β = 0.53 [0.29-0.77], year) and a negative association with GrimEAA (β = -0.44 [-0.70 to -0.17], year). BKMR analysis confirmed these findings. This study is among the first attempts to develop epigenetic clocks tailored for Asian population, providing evidence of air pollution's role in accelerating biological aging. Our findings highlight PM2.5 and O3 exposure as major contributors to EAA, emphasizing the need for air pollution mitigation strategies to promote healthier aging.
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Affiliation(s)
- Ching-Chun Huang
- Environmental and Occupational Medicine, College of Medicine, National Taiwan University and National Taiwan University Hospital, Taipei, Taiwan; Environmental and Occupational Medicine, National Taiwan University Hospital Hsin-Chu Branch, Hsin-Chu, Taiwan
| | - Shih-Chun Pan
- Environmental and Occupational Medicine, College of Medicine, National Taiwan University and National Taiwan University Hospital, Taipei, Taiwan
| | - Pau-Chung Chen
- Environmental and Occupational Medicine, College of Medicine, National Taiwan University and National Taiwan University Hospital, Taipei, Taiwan; National Institute of Environmental Health Sciences, National Health Research Institutes, Miaoli, Taiwan; Institute of Environmental and Occupational Health Sciences, National Taiwan University College of Public Health, Taipei, Taiwan
| | - Yue Leon Guo
- Environmental and Occupational Medicine, College of Medicine, National Taiwan University and National Taiwan University Hospital, Taipei, Taiwan; National Institute of Environmental Health Sciences, National Health Research Institutes, Miaoli, Taiwan; Institute of Environmental and Occupational Health Sciences, National Taiwan University College of Public Health, Taipei, Taiwan.
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Fadadu RP, Bozack AK, Cardenas A. Chemical and climatic environmental exposures and epigenetic aging: A systematic review. ENVIRONMENTAL RESEARCH 2025; 274:121347. [PMID: 40058550 PMCID: PMC12048242 DOI: 10.1016/j.envres.2025.121347] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2024] [Revised: 03/05/2025] [Accepted: 03/06/2025] [Indexed: 03/15/2025]
Abstract
Epigenetic aging biomarkers are used for evaluating morbidity and mortality, monitoring therapies, and direct-to-consumer testing. However, the influence of environmental exposures on epigenetic age acceleration (EAA), also known as epigenetic age deviation, has not been systematically evaluated. In this systematic review, we synthesized findings from human epidemiologic studies on chemical and climatic environmental exposures, particularly air pollution, chemicals, metals, climate, and cigarette smoke, and EAA. A total of 102 studies analyzing epigenetic data from over 180,000 subjects were evaluated. Overall, studies in each exposure category frequently included adult participants, used a variety of epigenetic clocks, analyzed whole blood samples, and had a low risk of bias. Exposure to air pollution (15/19 of studies; 79%), cigarette smoke (53/66; 80%), and synthetic and occupational chemicals (5/8; 63%) were notably associated with increased EAA. Results for essential and non-essential metal exposure were more equivocal: 7/13 studies (54%) reported increased EAA. One study reported increased EAA with greater temperature exposure. In summary, we identified environmental exposures, such as air pollution and cigarette smoke, that were strongly associated with increased EAA. Further research is needed with larger and more diverse samples and high-quality exposure assessment.
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Affiliation(s)
- Raj P Fadadu
- Department of Epidemiology and Population Health, Stanford School of Medicine, 1701 Page Mill Rd., Stanford, CA, 94304, USA; Department of Dermatology, University of California San Diego School of Medicine, 9500 Gilman Dr., La Jolla, CA, 92093, USA
| | - Anne K Bozack
- Department of Epidemiology and Population Health, Stanford School of Medicine, 1701 Page Mill Rd., Stanford, CA, 94304, USA
| | - Andres Cardenas
- Department of Epidemiology and Population Health, Stanford School of Medicine, 1701 Page Mill Rd., Stanford, CA, 94304, USA.
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Choi EY, Ailshire JA. Ambient outdoor heat and accelerated epigenetic aging among older adults in the US. SCIENCE ADVANCES 2025; 11:eadr0616. [PMID: 40009659 PMCID: PMC11864172 DOI: 10.1126/sciadv.adr0616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Accepted: 01/15/2025] [Indexed: 02/28/2025]
Abstract
Extreme heat is well-documented to adversely affect health and mortality, but its link to biological aging-a precursor of the morbidity and mortality process-remains unclear. This study examines the association between ambient outdoor heat and epigenetic aging in a nationally representative sample of US adults aged 56+ (N = 3686). The number of heat days in neighborhoods is calculated using the heat index, covering time windows from the day of blood collection to 6 years prior. Multilevel regression models are used to predict PCPhenoAge acceleration, PCGrimAge acceleration, and DunedinPACE. More heat days over short- and mid-term windows are associated with increased PCPhenoAge acceleration (e.g., Bprior7-dayCaution+heat: 1.07 years). Longer-term heat is associated with all clocks (e.g., Bprior1-yearExtremecaution+heat: 2.48 years for PCPhenoAge, Bprior1-yearExtremecaution+heat: 1.09 year for PCGrimAge, and Bprior6-yearExtremecaution+heat: 0.05 years for DunedinPACE). Subgroup analyses show no strong evidence for increased vulnerability by sociodemographic factors. These findings provide insights into the biological underpinnings linking heat to aging-related morbidity and mortality risks.
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Affiliation(s)
- Eun Young Choi
- Leonard Davis School of Gerontology, University of Southern California, McClintock Avenue, CA90089, Los Angeles, CA 3715, USA
| | - Jennifer A. Ailshire
- Leonard Davis School of Gerontology, University of Southern California, McClintock Avenue, CA90089, Los Angeles, CA 3715, USA
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Hu Y, Niu Z, Eckel SP, Toledo-Corral C, Yang T, Chen X, Vigil M, Pavlovic N, Lurmann F, Garcia E, Lerner D, Lurvey N, Grubbs B, Al-Marayati L, Johnston J, Dunton GF, Farzan SF, Habre R, Breton C, Bastain TM. Prenatal exposure to ambient air pollution and persistent postpartum depression. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 953:176089. [PMID: 39250973 PMCID: PMC11426198 DOI: 10.1016/j.scitotenv.2024.176089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2024] [Revised: 08/15/2024] [Accepted: 09/04/2024] [Indexed: 09/11/2024]
Abstract
BACKGROUND Ambient air pollution during pregnancy has been linked with postpartum depression up to 12 months, but few studies have investigated its impact on persistent depression beyond 12 months postpartum. This study aimed to evaluate prenatal ambient air pollution exposure and the risk of persistent depression over 3 years after childbirth and to identify windows of susceptibility. METHODS This study included 361 predominantly low-income Hispanic/Latina participants with full-term pregnancies in the Maternal and Developmental Risks from Environmental and Social Stressors (MADRES) cohort. We estimated daily residential PM2.5, PM10, NO2, and O3 concentrations throughout 37 gestational weeks using inverse-distance squared spatial interpolation from monitoring data and calculated weekly averaged levels. Depression was assessed by the 20-item Center for Epidemiologic Studies-Depression (CES-D) scale at 12, 24, and 36 months postpartum, with persistent postpartum depression defined as a CES-D score ≥16 at any of these timepoints. We performed robust Poisson log-linear distributed lag models (DLM) via generalized estimating equations (GEE) to estimate the adjusted risk ratio (RR). RESULTS Depression was observed in 17.8 %, 17.5 %, and 13.4 % of participants at 12, 24, and 36 months, respectively. We found one IQR increase (3.9 ppb) in prenatal exposure to NO2 during the identified sensitive window of gestational weeks 13-29 was associated with a cumulative risk ratio of 3.86 (95 % CI: 3.24, 4.59) for persistent depression 1-3 years postpartum. We also found one IQR increase (7.4 μg/m3) in prenatal exposure to PM10 during gestation weeks 12-28 was associated a cumulative risk ratio of 3.88 (95 % CI: 3.04, 4.96) for persistent depression. No clear sensitive windows were identified for PM2.5 or O3. CONCLUSIONS Mid-pregnancy PM10 and NO2 exposures were associated with nearly 4-fold increased risks of persistent depression after pregnancy, which has critical implications for prevention of perinatal mental health outcomes.
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Affiliation(s)
- Yuhong Hu
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | - Zhongzheng Niu
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | - Sandrah P Eckel
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | - Claudia Toledo-Corral
- Department of Health Sciences, California State University, Northridge, Northridge, CA, USA
| | - Tingyu Yang
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | - Xinci Chen
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | - Mario Vigil
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | | | | | - Erika Garcia
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | | | | | - Brendan Grubbs
- Department of Obstetrics and Gynecology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | - Laila Al-Marayati
- Department of Obstetrics and Gynecology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | - Jill Johnston
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | - Genevieve F Dunton
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | - Shohreh F Farzan
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | - Rima Habre
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA; Spatial Sciences Institute, University of Southern California, Los Angeles, CA, USA
| | - Carrie Breton
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
| | - Theresa M Bastain
- Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
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Daredia S, Bozack AK, Riddell CA, Gunier R, Harley KG, Bradman A, Eskenazi B, Holland N, Deardorff J, Cardenas A. Prenatal Maternal Occupation and Child Epigenetic Age Acceleration in an Agricultural Region: NIMHD Social Epigenomics Program. JAMA Netw Open 2024; 7:e2421824. [PMID: 39073821 PMCID: PMC11287394 DOI: 10.1001/jamanetworkopen.2024.21824] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Accepted: 03/05/2024] [Indexed: 07/30/2024] Open
Abstract
Importance Research on fetal epigenetic programming suggests that the intrauterine environment can have long-term effects on offspring disease susceptibility. Objective To examine the association between prenatal maternal occupation and child epigenetic age acceleration (EAA) among a farmworker community. Design, Setting, and Participants This cohort study included participants in the Center for the Health Assessment of Mothers and Children of Salinas, a prospective, Latino, prebirth cohort. Pregnant women were recruited from October 1, 1999, to October 1, 2000, from 6 community clinics in California's Salinas Valley agricultural region. Participants were 18 years or older, English or Spanish speaking, Medicaid eligible, and at 20 weeks' gestation or earlier at enrollment. Mother-child pairs who had blood DNA methylation measured at the ages of 7, 9, and 14 years were included. Data were analyzed from July 2021 to November 2023. Exposures Prenatal maternal occupation was ascertained through study interviews conducted during prenatal visits and shortly after delivery. Main Outcomes and Measures Child EAA at 7, 9, and 14 years of age was estimated using DNA methylation-based epigenetic age biomarkers. Three EAA measures were calculated: the Horvath EAA, skin and blood EAA, and intrinsic EAA. Linear mixed-effects models were used to estimate longitudinal associations of prenatal maternal occupation and child EAA, adjusting for confounders and prenatal organophosphate pesticide exposure. Results Analyses included 290 mother-child pairs (mean [SD] maternal age at delivery, 26.5 [5.2] years; 152 [52.4%] female infants); 254 mothers (87.6%) were born in Mexico, 33 (11.4%) in the US, and 3 (1.0%) in other countries; and 179 families (61.7%) were below the federal poverty line during pregnancy. Mothers reported engaging in several types of work during pregnancy, including agricultural fieldwork (90 [31.0%]), other agricultural work (40 [13.8%]), nonagricultural work (53 [18.3%]), or no work (107 [36.9%]). Children whose mothers worked in agricultural fields during pregnancy had a mean of 0.66 (95% CI, 0.17-1.15) years of greater Horvath EAA, 0.62 (95% CI, 0.31-0.94) years of greater skin and blood EAA, and 0.45 (95% CI, 0.07-0.83) years of greater intrinsic EAA compared with children whose mothers did not work during pregnancy. Conclusions and Relevance In this cohort study, prenatal maternal agricultural fieldwork was associated with accelerated childhood epigenetic aging independent of organophosphate pesticide exposure. Future research on which factors related to agricultural fieldwork accelerate aging in the next generation can inform targeted prevention programs and policies that protect children's health.
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Affiliation(s)
- Saher Daredia
- Division of Epidemiology, School of Public Health, University of California, Berkeley
| | - Anne K. Bozack
- Department of Epidemiology and Population Health, School of Medicine, Stanford University, Stanford, California
| | - Corinne A. Riddell
- Division of Epidemiology, School of Public Health, University of California, Berkeley
- Division of Biostatistics, School of Public Health, University of California, Berkeley
| | - Robert Gunier
- Center for Environmental Research and Community Health, School of Public Health, University of California, Berkeley
| | - Kim G. Harley
- Division of Epidemiology, School of Public Health, University of California, Berkeley
- Center for Environmental Research and Community Health, School of Public Health, University of California, Berkeley
- Division of Community Health Sciences, School of Public Health, University of California, Berkeley
| | - Asa Bradman
- Center for Environmental Research and Community Health, School of Public Health, University of California, Berkeley
- Department of Public Health, University of California, Merced
| | - Brenda Eskenazi
- Division of Epidemiology, School of Public Health, University of California, Berkeley
- Center for Environmental Research and Community Health, School of Public Health, University of California, Berkeley
- Division of Environmental Health Sciences, School of Public Health, University of California, Berkeley
| | - Nina Holland
- Center for Environmental Research and Community Health, School of Public Health, University of California, Berkeley
- Division of Environmental Health Sciences, School of Public Health, University of California, Berkeley
| | - Julianna Deardorff
- Center for Environmental Research and Community Health, School of Public Health, University of California, Berkeley
- Division of Community Health Sciences, School of Public Health, University of California, Berkeley
| | - Andres Cardenas
- Department of Epidemiology and Population Health, School of Medicine, Stanford University, Stanford, California
- Department of Pediatrics, School of Medicine, Stanford University, Stanford, California
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Chiu KC, Hsieh MS, Huang YT, Liu CY. Exposure to ambient temperature and heat index in relation to DNA methylation age: A population-based study in Taiwan. ENVIRONMENT INTERNATIONAL 2024; 186:108581. [PMID: 38507934 DOI: 10.1016/j.envint.2024.108581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 03/13/2024] [Accepted: 03/14/2024] [Indexed: 03/22/2024]
Abstract
BACKGROUND Climate change caused an increase in ambient temperature in the past decades. Exposure to high ambient temperature could result in biological aging, but relevant studies in a warm environment were lacking. We aimed to study the exposure effects of ambient temperature and heat index (HI) in relation to age acceleration in Taiwan, a subtropical island in Asia. METHODS The study included 2,084 participants from Taiwan Biobank. Daily temperature and relative humidity data were collected from weather monitoring stations. Individual residential exposure was estimated by ordinary kriging. Moving averages of ambient temperature and HI from 1 to 180 days prior to enrollment were calculated to estimate the exposure effects in multiple time periods. Age acceleration was defined as the difference between DNA methylation age and chronological age. DNA methylation age was calculated by the Horvath's, Hannum's, Weidner's, ELOVL2, FHL2, phenotypic (Pheno), Skin & blood, and GrimAge2 (Grim2) DNA methylation age algorithms. Multivariable linear regression models, generalized additive models (GAMs), and distributed lag non-linear models (DLNMs) were conducted to estimate the effects of ambient temperature and HI exposures in relation to age acceleration. RESULTS Exposure to high ambient temperature and HI were associated with increased age acceleration, and the associations were stronger in prolonged exposure. The heat stress days with maximum HI in caution (80-90°F), extreme caution (90-103°F), danger (103-124°F), and extreme danger (>124°F) were also associated with increased age acceleration, especially in the extreme danger days. Each extreme danger day was associated with 571.38 (95 % CI: 42.63-1100.13), 528.02 (95 % CI: 36.16-1019.87), 43.9 (95 % CI: 0.28-87.52), 16.82 (95 % CI: 2.36-31.28) and 15.52 (95 % CI: 2.17-28.88) days increase in the Horvath's, Hannum's, Weidner's, Pheno, and Skin & blood age acceleration, respectively. CONCLUSION High ambient temperature and HI may accelerate biological aging.
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Affiliation(s)
- Kuan-Chih Chiu
- Institute of Environmental and Occupational Health Sciences, College of Public Health, National Taiwan University, Taipei, Taiwan
| | - Ming-Shun Hsieh
- Department of Emergency Medicine, Taipei Veterans General Hospital, Taoyuan Branch, Taoyuan, Taiwan; Department of Emergency Medicine, Taipei Veterans General Hospital, Taipei, Taiwan; School of Medicine, National Yang Ming Chiao Tung University, Taipei, Taiwan
| | - Yen-Tsung Huang
- Institute of Statistical Science, Academia Sinica, Taipei, Taiwan; Department of Mathematics, College of Science, National Taiwan University, Taipei, Taiwan; Institute of Epidemiology and Preventive Medicine, College of Public Health, National Taiwan University, Taipei, Taiwan
| | - Chen-Yu Liu
- Institute of Environmental and Occupational Health Sciences, College of Public Health, National Taiwan University, Taipei, Taiwan; Department of Public Health, College of Public Health, National Taiwan University, Taipei, Taiwan; Population Health Research Center, National Taiwan University, Taipei, Taiwan.
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Cardenas A, Fadadu R, Bunyavanich S. Climate change and epigenetic biomarkers in allergic and airway diseases. J Allergy Clin Immunol 2023; 152:1060-1072. [PMID: 37741554 PMCID: PMC10843253 DOI: 10.1016/j.jaci.2023.09.011] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 09/18/2023] [Accepted: 09/18/2023] [Indexed: 09/25/2023]
Abstract
Human epigenetic variation is associated with both environmental exposures and allergic diseases and can potentially serve as a biomarker connecting climate change with allergy and airway diseases. In this narrative review, we summarize recent human epigenetic studies examining exposure to temperature, precipitation, extreme weather events, and malnutrition to discuss findings as they relate to allergic and airway diseases. Temperature has been the most widely studied exposure, with the studies implicating both short-term and long-term exposures with epigenetic alterations and epigenetic aging. Few studies have examined natural disasters or extreme weather events. The studies available have reported differential DNA methylation of multiple genes and pathways, some of which were previously associated with asthma or allergy. Few studies have integrated climate-related events, epigenetic biomarkers, and allergic disease together. Prospective longitudinal studies are needed along with the collection of target tissues beyond blood samples, such as nasal and skin cells. Finally, global collaboration to increase diverse representation of study participants, particularly those most affected by climate injustice, as well as strengthen replication, validation, and harmonization of measurements will be needed to elucidate the impacts of climate change on the human epigenome.
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Affiliation(s)
- Andres Cardenas
- Department of Epidemiology and Population Health, Stanford University, Stanford, Calif.
| | - Raj Fadadu
- School of Medicine, University of California, San Francisco, Calif
| | - Supinda Bunyavanich
- Division of Allergy and Immunology, Department of Pediatrics, and Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY
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