Synthetic bacterial consortia enhanced the degradation of mixed priority phthalate ester pollutants

Esterase-mediated degradation of dibutyl and diethylhexyl phthalates in aqueous and soil systems

Phthalate esters (PAEs), widely used as plasticizers, pose severe environmental and health risks. This study investigated the enzymatic hydrolysis of PAE congeners (dibutyl phthalate (DBP) and diethylhexyl phthalate (DEHP)) in aqueous and soil systems using Bacillus subtilis esterase and a new thermoalkaliphilic Geobacillus sp. esterase. A novel esterase secreted from Geobacillus sp. which was isolated from a geothermal region (Türkiye) was expressed in E.coli and purified. Geobacillus sp. esterase was able to degrade almost 30% of DBP and 40% of DEHP (100 mg/L) in the aqueous system within 336 h, while it degraded virtually 59% and 98% of DBP in agricultural area soil (soil-1) and forest area soil (soil-2), respectively, at the same time. To compare with Geobacillus sp. esterase, Bacillus subtilis esterase was used, which fully degraded DBP with 100 mg/L in the soil-1 and soil-2 for 72 h and 2 h, respectively. The performances of both esterases to degrade DEHP (100 mg/L) were similar in soil-1 (∼35%) and soil-2 (∼50%) for 336 h. Soil characteristics significantly influenced PAE degradation. Compared to that in the aqueous system, Geobacillus sp. esterase in soil systems had a higher degradation efficiency. This was likely due to its origin from a soil microorganism. Variations in the degradation ability of two enzymes most probably arose from substrate specificities and enzyme dynamics. Molecular docking results showed that DBP had a higher affinity to both enzymes than DEHP. Overall, this study offers important evidence that Bacillus subtilis esterase and Geobacillus sp. esterase are effective biocatalysts for removing the pollutants with ester bonds in the environment.

Biodegradation of pharmaceutical contaminants in wastewater using microbial consortia: Mechanisms, applications, and challenges

Pharmaceuticals, including non-steroidal anti-inflammatory drugs and antibiotics, have been increasingly detected in wastewater and pose substantial ecological and public health concerns due to their persistence and bioactivity. Conventional treatment processes are often insufficient for their complete removal, highlighting the need for advanced bioremediation strategies. This review critically examines the mechanisms, applications, and challenges of microbial consortia for pharmaceutical biodegradation. It emphasizes their synergistic metabolic pathways, such as cross-feeding, co-metabolism, and enzymatic cascades, that enable efficient degradation of complex contaminants. Recent advancements, such as membrane bioreactors, bioaugmentation with genetically engineered consortia, and integrated systems coupling microbial processes with advanced oxidation processes, are reviewed for their potential to enhance treatment efficacy, scalability, and sustainability. Comparative analysis underscores microbial consortia's superiority over single-strain systems and adsorption techniques in treating complex contaminant mixtures, achieving up to 100 % removal efficiency for specific compounds. Persistent challenges include microbial community instability, the toxicity of transformation products, and regulatory constraints related to genetically modified organisms. Strategic solutions are proposed, such as pilot-scale implementation of tailored consortia, Internet of things (IoT)-enabled real-time monitoring, and circular economy approaches for resource recovery. By addressing these challenges, microbial consortia-based biodegradation emerges as a transformative solution for pharmaceutical wastewater treatment, aligning with global sustainability goals. This review provides actionable insights for optimizing bioremediation frameworks, informing policy, and advancing research in environmental microbiology and wastewater engineering.

Degradation efficiency for phthalates and cooperative mechanism in synthetic bacterial consortium and its bioaugmentation for soil remediation

Agricultural soil contamination by phthalates (PAEs) necessitates efficient remediation strategies with microbial degradation. However, microbial cooperation of PAE-degrading consortia and their effectiveness in bioaugmentation through re-colonization remain poorly understood. In this study, synthetic PAE-degrading bacterial consortia were constructed using the 20 isolates derived from maize rhizosphere to explore microbial cooperation and bioaugmentation for PAE removal. Following optimization, five key isolates either with strong individual degradation capacity or beneficial metabolic interactions were co-cultured to form a synthetic consortium SC-5. This consortium demonstrated efficient degradation of di-n-butyl phthalate (DBP) and di-(2-ethylhexyl) phthalate (DEHP) (each at 200 mg/L), achieving 98.1 %-100 % removal percentages and reduced half-lives compared to the single strain. Metabolic pathway analysis revealed that consortium SC-5 could completely degrade PAEs and their intermediates including monoester, phthalic acid, and protocatechuate through cooperative metabolism. Within the consortium, Mycobacterium sp. R14 exhibited strong PAE-degrading ability, while genera Rhizobium and Paenarthrobacter predominated in mineral salt media supplemented with PAEs or glucose, as confirmed by high-throughput sequencing. These results underscore their differentiated utilization of parent PAEs, degradation intermediates, and metabolites through microbial cooperation. Furthermore, consortium SC-5 could effectively re-colonize maize rhizosphere with significantly higher relative abundances of the genera affiliating to the members of SC-5 than those in bulk soil, thereby significantly facilitating DEHP removal from rhizosphere. The present study highlights the importance of microbial cooperation within synthetic consortium and demonstrates its potential in bioaugmentation-based bioremediation of PAE-polluted soil.

Enhanced degradation of dibutyl phthalate using a synthetic mixed bacterial system and its impact on environmental toxicity

Dibutyl phthalate (DBP) is widely used in plastic manufacturing to enhance the flexibility and durability of products. However, DBP is a toxic, persistent environmental pollutant that poses significant risks to ecosystems and human health. This study investigates the DBP degradation efficiency of a mixed bacterial system (MBS) consisting of Serratia sp. G9, Bacillus sp. J7, and Serratia sp. J14, isolated from animal feces and oil-contaminated soil, and evaluates its environmental toxicity for potential practical application. The results show that the MBS exhibited significantly higher DBP removal efficiency and degradation rate compared to a single bacterial system (SBS), achieving near-complete removal of DBP (500 mg/L) within 7 days under optimal conditions. These conditions were determined to be an inoculum dose of 0.8 % (v/v), pH 7, temperature of 35 °C, and shaking speed of 120 rpm. Gas chromatography-mass spectrometry (GC-MS) analysis revealed the breakdown of DBP into non-toxic intermediates, and the degradation pathway was elucidated. Furthermore, aquatic toxicity and neurotoxicity assessments showed a significant reduction in toxicity after treatment, confirming the effectiveness of the MBS in mitigating the environmental impact of DBP pollution. Unlike previous studies that have focused solely on the biological treatability of DBP, this research emphasizes that the MBS offers an effective biological treatment strategy for DBP contamination and provides an environmentally friendly solution by significantly reducing environmental toxicity.

Algae- and bacteria-based biodegradation of phthalic acid esters towards the sustainable green solution

Phthalic acid esters are widely used worldwide as plasticizers. The high consumption of phthalates in China makes it the world's largest plasticizer market. The lack of phthalic acid ester's chemical bonding with the polymer matrix facilitates their detachment from plastic products and subsequent release into the environment and causes serious threats to the health of living organisms. Thus, environmentally friendly and sustainable solutions for their removal are urgently needed. In this context, both natural and engineered bacterial and algal communities have played a crucial role in the degradation of various phthalic acid esters present in water and soil. When algae-bacteria co-culture is compared to a singular algae or bacteria system, this symbiotic system shows superior performance in the removal of dibutyl phthalates and diethyl phthalates from synthetic wastewater. This review provides an optimistic outlook for co-culture systems by in-depth examining single microorganisms, namely bacteria and algae, as well as algae-bacterial consortiums for phthalates degradation, which will draw attention to species co-existence for the removal of various pollutants from the environment. In addition, further development and research, particularly on the mechanisms, genes involved in the degradation of phthalic acid esters, and interactions between bacterial and algal species, will lead to the discovery of more adaptable species as well as the production of targeted species to address the environmental pollution crisis and provide a green, efficient, and sustainable approach to environmental protection. Discrepancies in knowledge and potential avenues for exploration will enhance the existing body of literature, enabling researchers to investigate this field more comprehensively.

Novel nanoliter spray enhanced microwave plasma ionization mass spectrometry for the simultaneous detection of heavy metals and organic plasticizers in soil: A case study in a lead-acid battery industrial park

Soil pollution is predominantly attributed to the presence of heavy metal elements and organic compounds; However, current detection methodologies are restricted to the identification of only one of these two sources at a time. A novel analytical approach, known as nanoliter spray enhanced microwave plasma ionization mass spectrometry (Nano-Spray-EMPI-MS), has been developed to facilitate the simultaneous detection of both heavy metals and organic pollutants in soil samples. This technique is characterized by its requirement for minimal sample volumes, thereby allowing for efficient and rapid analysis. The research concentrated on the simultaneous analysis of five heavy metals (Pb, Zn, Cu, Cr, and Ni) and three major phthalates (PAEs), specifically DEHP, DBP, and DMP. The detection and quantification limits for the heavy metals were established to be between 0.16-0.57 and 0.53-1.88 μg L-1, respectively, while the limits for the PAEs ranged from 0.02 to 0.05 and 0.07-0.16 μg L-1. Validation of the method's efficacy in soil detection demonstrated recovery rates of 90.9 %-105.7 % for heavy metals and 89.4 %-97.2 % for PAEs. The application of this method analyzing soil samples collected from an area adjacent to a lead-acid battery industrial park in China revealed varying levels of contamination by both heavy metals and PAEs. Notably, Lead contamination was found to be the most pronounced, with a peak concentration of 862.5 mg kg-1 and a correspondingly high pollution index. These findings are significant for evaluating local ecological risks, pinpointing sources of pollution, and formulating effective pollution management strategies in the region.

Pollution Status, Ecological Effects, and Bioremediation Strategies of Phthalic Acid Esters in Agricultural Ecosystems: A Review

Phthalic acid esters (PAEs) are common organic contaminants in farmland soil throughout agricultural systems, posing significant threats to human health and thus closely associated with food safety concerns. Here, we consolidate the latest findings regarding the distribution, ecological effects, bioremediation methods, and microbial degradation pathways of PAEs in agricultural ecosystems. Generally, di(2-ethylhexyl) phthalate (DEHP), di-n-butyl phthalate (DnBP), and di-isobutyl phthalate (DiBP) exhibit the highest detection frequencies and concentrations in soil, air and agricultural products. The presence of these PAEs in agricultural ecosystems can significantly affect soil and plant-associated microbial communities, leading to decreased yield and quality of agricultural products. Bioremediation techniques, such as microbial degradation and phytoremediation, are frequently explored to address these issues. Overall, this review provides a comprehensive overview of current research on PAEs in China's agricultural systems and offers insights into potential problems and future research directions.

Biodegradation of PAEs in contaminated soil by immobilized bacterial agent and the response of indigenous bacterial community

Phthalic acid esters (PAEs) are common hazardous organic contaminants in agricultural soil. Microbial remediation is an effective and eco-friendly method for eliminating PAEs. Nevertheless, the operational mode and potential application of immobilized microorganisms in PAEs-contaminated soil are poorly understood. In this study, we prepared an immobilized bacterial agent (IBA) using a cedar biochar carrier to investigate the removal efficiency of PAEs by IBA in the soil. We found that IBA degraded 88.35% of six optimal-control PAEs, with 99.62% biodegradation of low-molecular-weight PAEs (DMP, DEP, and DBP). The findings demonstrated that the IBA achieved high efficiency and a broad-spectrum in degrading PAEs. High-throughput sequencing revealed that IBA application altered the composition of the soil bacterial community, leading to an increase in the relative abundance of PAEs-degrading bacteria (Rhodococcus). Furthermore, co-occurrence network analysis indicated that IBA promoted microbial interactions within the soil community. This study introduces an efficient method for the sustainable remediation of PAEs-contaminated soil.

Simulation study on heavy metals, phthalate esters, and organic halogens: Content and distribution characteristics during waste paper recycling

Imported waste paper and recycled pulp may contain pollutants, posing potential environmental risks to the ecosystem of China. This study examined the presence and distribution patterns of heavy metals, phthalate esters (PAEs), and adsorbable organic halogens (AOX) in recycled pulp and production wastewater after various recycling processes of three typical restricted types of imported waste paper. The results indicated that the concentration ranges of heavy metals, PAEs, and AOX in the three types of imported recycled waste paper were 21.61-40.38 mg/kg, 15.35-27.88 mg/kg, and 19.21-57.72 mg/kg, respectively. The comparative analysis with the initial waste paper demonstrated a reduction in heavy metal content in the recycled pulp by 17.80-49.75%, PAEs by 65.42-90.55%, and AOX by 32.80-42.34%. The average concentrations of these pollutants in wastewater were 0.85-1.66 mg/L, 27.28-59.86 mg/L, and 1.15-3.34 mg/L, respectively. Chromium and lead were identified as the primary heavy metals present in the waste paper. Following pulping, No. 1 and No. 2 met the arsenic and lead levels specified in the "Reuse Fiber Pulp" standard (GB/T24320-2021), whereas No. 3 met these criteria after de-inking only. The main PAEs detected in the waste paper were dibutyl phthalate and di(2-ethylhexyl) phthalate, most of which were removed during the pulping stage. Significantly higher levels of AOX were observed in No. 2 and No. 3 than in No. 1, with a minimal impact on AOX removal from the pulp during the recycling process.

Engineering bacterial biocatalysts for the degradation of phthalic acid esters

Phthalic acid esters (PAEs) are synthetic diesters derived from o-phthalic acid, commonly used as plasticizers. These compounds pose significant environmental and health risks due to their ability to leach into the environment and act as endocrine disruptors, carcinogens, and mutagens. Consequently, PAEs are now considered major emerging contaminants and priority pollutants. Microbial degradation, primarily by bacteria and fungi, offers a promising method for PAEs bioremediation. This article highlights the current state of microbial PAEs degradation, focusing on the major bottlenecks and associated challenges. These include the identification of novel and more efficient PAE hydrolases to address the complexity of PAE mixtures in the environment, understanding PAEs uptake mechanisms, characterizing novel o-phthalate degradation pathways, and studying the regulatory network that controls the expression of PAE degradation genes. Future research directions include mitigating the impact of PAEs on health and ecosystems, developing biosensors for monitoring and measuring bioavailable PAEs concentrations, and valorizing these residues into other products of industrial interest, among others.

Whole-cell biocatalysis for phthalate esters biodegradation in wastewater by a saline soil bacteria SSB-consortium

Phthalic acid esters (PAE) are widely used as plasticizers and have been classified as ubiquitous environmental contaminants of primary concern. PAE have accumulated intensively in surface water, groundwater, and wastewaters; thus, PAE degradation is essential. In the present study, the ability of a saline soil bacteria (SSB)-consortium to degrade synthetic wastewater-phthalates with alkyl chains of different lengths, such as diethyl phthalate (DEP), di-n-butyl phthalate (DBP), benzyl butyl phthalate (BBP), and di (2-ethylhexyl) phthalate (DEHP) was characterized. A central composite design-response surface methodology was applied to optimize the degradation of each phthalate, where the independent variables were temperature (21-41 °C), pH (5.3-8.6) and PAE concentration (79.5-920.4 mg L-1), and Gas Chromatography-Mass Spectrometry was used to identify the metabolites generated during phthalate degradation. Optimal conditions were 31 °C, pH 7.0, and an initial PAE concentration of 500 mg L-1, where the SSB-consortium removed 84.9%, 98.47%, 99.09% and 98.25% of initial DEP, DBP, BBP, and DEHP, respectively, in 168h. A first-order kinetic model explained - the biodegradation progression, while the half-life of PAE degradation ranged from 12.8 to 29.8 h. Genera distribution of the SSB-consortium was determined by bacterial meta-taxonomic analysis. Serratia, Methylobacillus, Acrhomobacter, and Pseudomonas were the predominant genera; however, the type of phthalate directly affected their distribution. Scanning electron microscopy analysis showed that high concentrations (1000 mg L-1) of phthalates induced morphological alterations in the bacterial SSB-consortium. The metabolite profiling showed that DEP, DBP, BBP, and DEHP could be fully metabolized through the de-esterification and β-oxidation pathways. Therefore, the SSB-consortium can be considered a potential candidate for bioremediation of complex phthalate-contaminated water resources.

Simultaneously degradation of various phthalate esters by Rhodococcus sp. AH-ZY2: Strain, omics and enzymatic study

Phthalate esters (PAEs) are widely used as plasticizers and cause serious complex pollution problem in environment. Thus, strains with efficient ability to simultaneously degrade various PAEs are required. In this study, a newly isolated strain Rhodococcus sp. AH-ZY2 can degrade 500 mg/L Di-n-octyl phthalate completely within 16 h and other 500 mg/L PAEs almost completely within 48 h at 37 °C, 180 rpm, and 2 % (v/v) inoculum size of cultures with a OD600 of 0.8. OD600 = 0.8, 2 % (v/v). Twenty genes in its genome were annotated as potential esterase and four of them (3963, 4547, 5294 and 5359) were heterogeneously expressed and characterized. Esterase 3963 and 4547 is a type I PAEs esterase that hydrolyzes PAEs to phthalate monoesters. Esterase 5294 is a type II PAEs esterase that hydrolyzes phthalate monoesters to phthalate acid (PA). Esterase 5359 is a type III PAEs esterase that simultaneously degrades various PAEs to PA. Molecular docking results of 5359 suggested that the size and indiscriminate binding feature of spacious substrate binding pocket may contribute to its substrate versatility. AH-ZY2 is a potential strain for efficient remediation of PAEs complex pollution in environment. It is first to report an esterase that can efficiently degrade mixed various PAEs.

Mechanisms of synthetic bacterial flora YJ-1 to enhance cucumber resistance under combined phthalate-disease stresses

Biotic and abiotic stresses have emerged as major constraints to agricultural production, causing irreversible adverse impacts on agricultural production systems and thus posing a threat to food security. In this study, a new strain of Bacillus subtilis DNYB-S1 was isolated from soil contaminated with Fusarium wilt. It was found that artificially synthetic flora (YJ-1) [Enterobacter sp. DNB-S2 and Rhodococcus pyridinovorans DNHP-S2, DNYB-S1] could effectively mitigate both biotic (Fusarium wilt) and abiotic (phthalates) sources of stresses, with the inhibition rate of YJ-1 resistant to wilt being 71.25% and synergistic degradation of 500 mg/L PAEs was 91.23%. The adaptive difference of YJ-1 was 0.59 and the ecological niche overlap value was -0.05 as determined by Lotka-Volterra modeling. These results indicate that YJ-1 has good ecological stability. The major degradation intermediates included 2-ethylhexyl benzoate (EHBA), phthalic acid (PA), diisobutyl phthalate (DIBP), and butyl benzoate, suggesting that YJ-1 can provide a more efficient pathway for PAEs degradation. In addition, there was metabolic mutualism among the strains that will selectively utilize the provided carbon source (some metabolites of PAEs) for growth. The pot experiment showed that YJ-1 with cucumber reduced the incidence of cucumber wilt by 45.31%. YJ-1 could reduce the concentration of PAEs (DBP: DEHP = 1:1) in soil species from 30 mg/kg to 4.26 mg/kg within 35 d, with a degradation efficiency of 85.81%. Meanwhile, the concentration of PAEs in cucumber was reduced to 0.01 mg/kg, indicating that YJ-1 is directly involved in the degradation of soil PAEs and the enhancement of plant immunity. In conclusion, this study provides a new perspective for the development of customized microbiomes for phytoremediation under combined biotic-abiotic stresses in agricultural production processes.

Molecular insights into the catalytic mechanism of a phthalate ester hydrolase

Phthalate esters (PAEs) are emerging hazardous and toxic chemicals that are extensively used as plasticizers or additives. Diethyl phthalate (DEP) and dimethyl phthalate (DMP), two kinds of PAEs, have been listed as the priority pollutants by many countries. PAE hydrolases are the most effective enzymes in PAE degradation, among which family IV esterases are predominate. However, only a few PAE hydrolases have been characterized, and as far as we know, no crystal structure of any PAE hydrolases of the family IV esterases is available to date. HylD1 is a PAE hydrolase of the family IV esterases, which can degrade DMP and DEP. Here, the recombinant HylD1 was characterized. HylD1 maintained a dimer in solution, and functioned under a relatively wide pH range. The crystal structures of HylD1 and its complex with monoethyl phthalate were solved. Residues involved in substrate binding were identified. The catalytic mechanism of HylD1 mediated by the catalytic triad Ser140-Asp231-His261 was further proposed. The hylD1 gene is widely distributed in different environments, suggesting its important role in PAEs degradation. This study provides a better understanding of PAEs hydrolysis, and lays out favorable bases for the rational design of highly-efficient PAEs degradation enzymes for industrial applications in future.

Exploring di (2-ethylhexyl) phthalate degradation by a synthetic marine bacterial consortium: Genomic insights, pathway and interaction prediction, and application in sediment microcosms

Di (2-ethylhexyl) phthalate (DEHP), a toxic phthalate ester (PAE) plasticizer, is often detected in marine sediment and biota. Our understanding of DEHP-degrading marine bacteria and the associated genetic mechanisms is limited. This study established a synthetic bacterial consortium (A02) consisting of three marine bacteria (OR05, OR16, and OR21). Consortium A02 outperformed the individual strains in DEHP degradation. Investigations into the degradation of DEHP intermediates revealed that OR05 and OR16 likely contributed to enhanced DEHP degradation by Consortium A02 via the utilization of DEHP intermediates, such as protocatechuic acid and mono (ethylhexyl) phthalate, with OR21 as the key DEHP degrader. A pathway of DEHP degradation by Consortium A02 was predicted based on genome analysis and experimental degradation. Bioaugmentation with Consortium A02 led to 80% DEHP degradation in 26 days in saline sediment (100 mg/kg), surpassing the 53% degradation by indigenous microbes, indicating the potential of A02 for treating DEHP-contaminated sediments. Meanwhile, bioaugmentation notably changed the bacterial community, with the exclusive presence of certain bacterial genera in the A02 bioaugmented microcosms, and was predicted to result in a more dynamic and active sediment bacterial community. This study contributes to the limited literature on DEHP degradation by marine bacteria and their associated genes.

A systematic review of global distribution, sources and exposure risk of phthalate esters (PAEs) in indoor dust

Phthalate esters (PAEs) are a class of plasticizers that are readily released from plastic products, posing a potential exposure risk to human body. At present, much attention is paid on PAE concentrations in indoor dust with the understanding of PAEs toxicity. This study collected 8187 data on 10 PAEs concentrations in indoor dusts from 26 countries and comprehensively reviewed the worldwide distribution, influencing factors, and health risks of PAEs. Di-(2-ethylhexyl) phthalate (DEHP) is the predominant PAE with a median concentration of 316 μg·g-1 in indoor dust. Polyvinyl chloride wallpaper and flooring and personal care products are the main sources of PAEs indoor dust. The dust concentrations of DEHP show a downward trend over the past two decades, while high dust concentrations of DiNP are found from 2011 to 2016. The median dust contents of 8 PAEs in public places are higher than those in households. Moreover, the concentrations of 9 PAEs in indoor dusts from high-income countries are higher than those from upper-middle-income countries. DEHP in 69.8% and 77.8% of the dust samples may pose a potential carcinogenic risk for adults and children, respectively. Besides, DEHP in 16.9% of the dust samples may pose a non-carcinogenic risk to children. Nevertheless, a negligible risk was found for other PAEs in indoor dust worldwide. This review contributes to an in-depth understanding of the global distribution, sources and health risks of PAEs in indoor dust.

Assimilation of phthalate esters in bacteria

The massive usage of phthalate esters (PAEs) has caused serious pollution. Bacterial degradation is a potential strategy to remove PAE contamination. So far, an increasing number of PAE-degrading strains have been isolated, and the catabolism of PAEs has been extensively studied and reviewed. However, the investigation into the bacterial PAE uptake process has received limited attention and remains preliminary. PAEs can interact spontaneously with compounds like peptidoglycan, lipopolysaccharides, and lipids on the bacterial cell envelope to migrate inside. However, this process compromises the structural integrity of the cells and causes disruptions. Thus, membrane protein-facilitated transport seems to be the main assimilation strategy in bacteria. So far, only an ATP-binding-cassette transporter PatDABC was proven to transport PAEs across the cytomembrane in a Gram-positive bacterium Rhodococcus jostii RHA1. Other cytomembrane proteins like major facilitator superfamily (MFS) proteins and outer membrane proteins in cell walls like FadL family channels, TonB-dependent transporters, and OmpW family proteins were only reported to facilitate the transport of PAEs analogs such as monoaromatic and polyaromatic hydrocarbons. The functions of these proteins in the intracellular transport of PAEs in bacteria await characterization and it is a promising avenue for future research on enhancing bacterial degradation of PAEs. KEY POINTS: • Membrane proteins on the bacterial cell envelope may be PAE transporters. • Most potential transporters need experimental validation.

Thiopseudomonas acetoxidans sp. nov., an aerobic acetic and butyric acids oxidizer isolated from anaerobic fermentation liquid of food waste

A Gram-stain-negative, oxidase-negative, rod-shaped, motile, facultatively anaerobic bacterial strain, designated as CY1220T, was isolated from an anaerobic fermentation liquid of food waste treatment plant. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the strain CY1220T belongs to the genus Thiopseudomonas, with the highest sequence similarity to Thiopseudomonas alkaliphila B4199T (95.91%), followed by Thiopseudomonas denitrificans X2T (95.56%). The genomic DNA G + C content of strain CY1220T was 48.6 mol%. The average nucleotide identity values and digital DNA-DNA hybridization values between strain CY1220T and the type species of T. alkaliphila and T. denitrificans were in the range of 70.8-71.6% and 19.2-20.0%, respectively, below the thresholds for species delineation. The strain was able to grow utilizing acetic acid and butyric acid (AABA) as the sole carbon source in aerobic conditions. Genomic analysis predicted that the strain could synthesize vitamin B12 and ectoine. The predominant cellular fatty acids were C18:1 ω7c and/or C18:1 ω6c, C16:0, C16:1 ω7c and/or C16:1 ω6c and C12:0. The polar lipids comprised diphosphatidylglycerol, unknown polar lipid, phosphatidylethanolamine, phosphatidylglycerol, and phospholipid. Q-8 (2.1%) and Q-9 (97.9%) were detected as the respiratory quinones. Based on its phenotypic, genotypic and genomic characteristics, strain CY1220T represents a novel species in the genus Thiopseudomonas, for which the name Thiopseudomonas acetoxidans sp. nov. is proposed. The type strain is CY1220T (= GDMCC 1.3503 T = JCM 35747 T).