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Vogt ÉL, Model JFA, Lima MV, de Souza SK, Rocha DS, Fabres RB, de Amaral M, Simões LAR, Vinagre AS. The impact of chasing stress on the metabolism of the Atlantic Ghost Crab Ocypode quadrata (Fabricius, 1787). JOURNAL OF EXPERIMENTAL ZOOLOGY. PART A, ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY 2023; 339:887-897. [PMID: 37522484 DOI: 10.1002/jez.2739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 07/12/2023] [Accepted: 07/18/2023] [Indexed: 08/01/2023]
Abstract
Ocypode quadrata, a Ghost crab species found along the western Atlantic coast, is considered a bioindicator of anthropogenic impact on sandy beaches. Ghost Crabbing, a touristic activity in which ghost crabs are chased just for fun, is a potentially threatening activity for this crab. In crustaceans, metabolites such as glucose and lactate, and the gene expression of crustacean hyperglycemic hormone (CHH) and heat shock proteins (HSPs) increase when the animals are exposed to several types of stress, including alterations in temperature, salinity, or exposure to xenobiotics. This work was developed to identify if being chased by humans would affect these markers of stress in this species of crab. The effects of chasing stress on hemolymph and tissue metabolites and the gene expression levels of CHH and HSP70 were investigated. The levels of lactate in the hemolymph of stressed crabs were six times higher than those of control crabs immediately after chasing and decreased progressively during recovery, indicating an active anaerobic metabolism during the stress. On the contrary, glucose levels in the hemolymph of the stressed crabs increased progressively from 30 to 60 min after chasing, indicating an inverse correlation between glucose and lactate and the conversion of lactate to glucose by gluconeogenesis. In stressed crabs, the levels of triglycerides in the hemolymph decreased 30 min after chasing, while the opposite tended to occur in the hepatopancreas, indicating that during recovery, the crabs use triglycerides as energy source to sustain aerobic metabolism. Finally, this study demonstrates that ghost crabs are stressed by minimum human contact and that "ghost crabbing" must not be encouraged as a tourist activity.
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Affiliation(s)
- Éverton Lopes Vogt
- Department of Physiology, Comparative Endocrinology and Metabolism Laboratory (LAMEC), Programa de Pós-Graduação em Ciências Biológicas: Fisiologia, Instituto de Ciências Básicas da Saúde (ICBS), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul, Brazil
| | - Jorge Felipe Argenta Model
- Department of Physiology, Comparative Endocrinology and Metabolism Laboratory (LAMEC), Programa de Pós-Graduação em Ciências Biológicas: Fisiologia, Instituto de Ciências Básicas da Saúde (ICBS), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul, Brazil
| | - Matheus Vieira Lima
- Department of Physiology, Comparative Endocrinology and Metabolism Laboratory (LAMEC), Programa de Pós-Graduação em Ciências Biológicas: Fisiologia, Instituto de Ciências Básicas da Saúde (ICBS), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul, Brazil
| | - Samir Khal de Souza
- Department of Physiology, Comparative Endocrinology and Metabolism Laboratory (LAMEC), Programa de Pós-Graduação em Ciências Biológicas: Fisiologia, Instituto de Ciências Básicas da Saúde (ICBS), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul, Brazil
| | - Débora Santos Rocha
- Department of Physiology, Comparative Endocrinology and Metabolism Laboratory (LAMEC), Programa de Pós-Graduação em Ciências Biológicas: Fisiologia, Instituto de Ciências Básicas da Saúde (ICBS), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul, Brazil
| | - Rafael Bandeira Fabres
- Department of Physiology, Comparative Endocrinology and Metabolism Laboratory (LAMEC), Programa de Pós-Graduação em Ciências Biológicas: Fisiologia, Instituto de Ciências Básicas da Saúde (ICBS), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul, Brazil
| | - Marjoriane de Amaral
- Department of Physiology, Comparative Endocrinology and Metabolism Laboratory (LAMEC), Programa de Pós-Graduação em Ciências Biológicas: Fisiologia, Instituto de Ciências Básicas da Saúde (ICBS), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul, Brazil
| | - Leonardo Airton Ressel Simões
- Department of Physiology, Comparative Endocrinology and Metabolism Laboratory (LAMEC), Programa de Pós-Graduação em Ciências Biológicas: Fisiologia, Instituto de Ciências Básicas da Saúde (ICBS), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul, Brazil
| | - Anapaula Sommer Vinagre
- Department of Physiology, Comparative Endocrinology and Metabolism Laboratory (LAMEC), Programa de Pós-Graduação em Ciências Biológicas: Fisiologia, Instituto de Ciências Básicas da Saúde (ICBS), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul, Brazil
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Gu J, Ye Y, Zheng ZW, Luo W, Gong YJ, Feng QL, Li S, Huang LH. Cytoplasmic Hsp70s promote EcR transport into the nucleus by responding to various stimuli. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2023; 157:103964. [PMID: 37230333 DOI: 10.1016/j.ibmb.2023.103964] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 05/21/2023] [Accepted: 05/22/2023] [Indexed: 05/27/2023]
Abstract
Metamorphosis is one of the most important physiological processes in insects, which is coordinated by juvenile hormone (JH) and 20-hydroxyecdysone (20E). Ecdysone receptor (EcR) is a steroid receptor (SR), which usually presents in cytoplasm and transfers into nucleus after binding to 20E. Heat shock proteins (Hsps) are suggested to be important members of the SR complex. However, their role in nucleocytoplasmic shuttle of the EcR remains unclear. In the present study, we found that apoptozole (Hsp70 inhibitor) suppressed the larval molting by decreasing the expression of ecdysone signaling genes. Two cytoplasmic (Cy) Hsp70s (Hsp72 and Hsp73) interacted with both EcR and ultraspiracle (USP, the heterodimer partner of EcR). By immunohistochemistry experiments, we revealed that CyHsp70 co-localized with EcR in the cytoplasm, and that both apoptozole and interfering of CyHsp70 significantly inhibited the process of EcR entering the nucleus under 20E induction, while reducing the expression of ecdysone signaling genes. Interestingly, the nuclear localization of EcR was also promoted by two other stimuli, including JH and heat stress, and this promotion was inhibited by apoptozole. This implies that various stimuli can induce EcR entry into the nucleus, and that this process is mediated by CyHsp70. Curiously, neither JH nor heat stress activated the ecdysone signaling genes; instead, they have a significant inhibitory effect on them. Taken together, it seems that Cytoplasmic Hsp70s promote EcR transport into the nucleus by responding to various stimuli, and that the biological effects of various stimuli passing through the EcR are different. Thus, our data provide a new viewpoint to understand the mechanism of nucleocytoplasmic shuttle of EcR.
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Affiliation(s)
- Jun Gu
- Guangdong Provincial Key Laboratory of Insect Developmental Biology and Applied Technology, Institute of Insect Science and Technology, School of Life Sciences, South China Normal University, Guangzhou, 510631, China
| | - Yan Ye
- Guangdong Provincial Key Laboratory of Insect Developmental Biology and Applied Technology, Institute of Insect Science and Technology, School of Life Sciences, South China Normal University, Guangzhou, 510631, China
| | - Zi-Wen Zheng
- Guangdong Provincial Key Laboratory of Insect Developmental Biology and Applied Technology, Institute of Insect Science and Technology, School of Life Sciences, South China Normal University, Guangzhou, 510631, China
| | - Wei Luo
- Guangdong Provincial Key Laboratory of Insect Developmental Biology and Applied Technology, Institute of Insect Science and Technology, School of Life Sciences, South China Normal University, Guangzhou, 510631, China
| | - Yan-Jun Gong
- Guangdong Provincial Key Laboratory of Insect Developmental Biology and Applied Technology, Institute of Insect Science and Technology, School of Life Sciences, South China Normal University, Guangzhou, 510631, China
| | - Qi-Li Feng
- Guangdong Provincial Key Laboratory of Insect Developmental Biology and Applied Technology, Institute of Insect Science and Technology, School of Life Sciences, South China Normal University, Guangzhou, 510631, China
| | - Sheng Li
- Guangdong Provincial Key Laboratory of Insect Developmental Biology and Applied Technology, Institute of Insect Science and Technology, School of Life Sciences, South China Normal University, Guangzhou, 510631, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China
| | - Li-Hua Huang
- Guangdong Provincial Key Laboratory of Insect Developmental Biology and Applied Technology, Institute of Insect Science and Technology, School of Life Sciences, South China Normal University, Guangzhou, 510631, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China.
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Effects of transport stress on immune response, physiological state, and WSSV concentration in the red swamp crayfish Procambarus clarkii. AQUACULTURE AND FISHERIES 2022. [DOI: 10.1016/j.aaf.2022.01.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Crayfish (Procambarus clarkii) TRPA1 is required for the defense against Aeromonas hydrophila infection under high temperature conditions and contributes to heat sensing. Comp Biochem Physiol B Biochem Mol Biol 2021; 257:110654. [PMID: 34371155 DOI: 10.1016/j.cbpb.2021.110654] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 07/18/2021] [Accepted: 08/03/2021] [Indexed: 11/20/2022]
Abstract
Temperature is an important environmental factor influencing immune responses of crayfish. However, the mechanism underlying how temperature affects immune responses remains unclear. Here, we identified an ortholog of the transient receptor potential ankyrin subtype 1 (TRPA1), a temperature sensor of Drosophila, from Procambarus clarkii (PcTRPA1-1). Its expression was induced by high temperature and challenge with heat-killed A. hydrophila at high temperature, but not at lower temperature. PcTRPA1-1 silencing led to increased mortality of crayfish challenged with live A. hydrophila at high temperature (32 °C), but had no statistically significant effect on crayfish mortality at 24 °C. This suggests that PcTRPA1-1 is involved in the immune responses of crayfish at high temperature as a potential temperature sensor. Further assay exhibited that PcTRPA1-1 silencing affected immune responses of crayfish, including increase of lipid peroxidation, reduction of total antioxidant capacity, decreased phenoloxidase activity and disruption of circadian rhythm of total hemocyte count entrained by temperature cycles. PcTRPA1-1 silencing also decreased the expression of PcHSP70 and PcHSP90 which are responsive to heat stimuli and bacterial challenge. The results collectively indicate that TRPA1 contributes to heat sensing of crayfish and is required for crayfish defense against bacterial infection.
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Toullec JY, Cascella K, Ruault S, Geffroy A, Lorieux D, Montagné N, Ollivaux C, Lee CY. Antarctic krill (Euphausia superba) in a warming ocean: thermotolerance and deciphering Hsp70 responses. Cell Stress Chaperones 2020; 25:519-531. [PMID: 32215845 PMCID: PMC7192979 DOI: 10.1007/s12192-020-01103-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 03/17/2020] [Accepted: 03/17/2020] [Indexed: 10/24/2022] Open
Abstract
The Antarctic krill, Euphausia superba, is a Southern Ocean endemic species of proven ecological importance to the region. In the context of predicted global warming, it is particularly important to understand how classic biomarkers of heat stress function in this species. In this respect, Hsp70s are acknowledged as good candidates. However, previous studies of expression kinetics have not been able to demonstrate significant upregulation of these genes in response to heat shocks at 3 °C and 6 °C for 3 and 6 h. The current work complements these previous results and broadens the prospects for the use of Hsp70s as a relevant marker of thermal shock in this krill species. New experiments demonstrate that induction of Hsp70 isoforms was not detected during exposure to heat shock, but increased expression was observed after several hours of recovery. To complete the analysis of the expression kinetics of the different isoforms, experiments were carried out over short time scales (1 and 2 h at 3 °C and 6 °C) as well as at higher temperatures (9 °C, 12 °C, and 15 °C for 3 h), without any significant response. A 6-week monitoring of animals at 3 °C showed that the time factor is decisive in the establishment of the response. CTmax experiments with incremental times of 1 °C per day or 1 °C every 3 days have shown a particularly high resilience of the animals. The demonstration of the abundance of Hsp70s present before thermal stress in various species of krill, as well as in specimens of E. superba of various origins, showed that the delay in the response in expression could be related to the high constitutive levels of Hsp70 available before the stress experiments. The alternative labelling of the two main isoforms of Hsp70 according to the origin of the animals allowed hypotheses to be put forward on the functioning of thermoregulation in Antarctic krill as well as ice krill.
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Affiliation(s)
- Jean-Yves Toullec
- Faculté de Sciences, CNRS, UMR 7144, Adaptation et Diversité en Milieu Marin, AD2M, Station Biologique de Roscoff, Sorbonne Université, 29682, Roscoff, France.
| | - Kévin Cascella
- Faculté de Sciences, CNRS, UMR 7144, Adaptation et Diversité en Milieu Marin, AD2M, Station Biologique de Roscoff, Sorbonne Université, 29682, Roscoff, France
| | - Stéphanie Ruault
- Faculté de Sciences, CNRS, UMR 7144, Adaptation et Diversité en Milieu Marin, AD2M, Station Biologique de Roscoff, Sorbonne Université, 29682, Roscoff, France
| | - Alexandre Geffroy
- Faculté de Sciences, CNRS, UMR 7144, Adaptation et Diversité en Milieu Marin, AD2M, Station Biologique de Roscoff, Sorbonne Université, 29682, Roscoff, France
| | - David Lorieux
- Faculté de Sciences, CNRS, UMR 7144, Adaptation et Diversité en Milieu Marin, AD2M, Station Biologique de Roscoff, Sorbonne Université, 29682, Roscoff, France
| | - Nicolas Montagné
- Faculté de Sciences, Institute of Ecology and Environmental Sciences Paris, iEES Paris, Sorbonne Université, 75005, Paris, France
| | - Céline Ollivaux
- Faculté de Sciences, CNRS, UMR Laboratoire de Biologie Intégrative des Modèles Marins, LBI2M, Station Biologique de Roscoff, Sorbonne Université, 29682, Roscoff, France
| | - Chi-Ying Lee
- Department of Biology, National Changhua University of Education, Changhua, 50058, Taiwan
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6
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Description of strongly heat-inducible heat shock protein 70 transcripts from Baikal endemic amphipods. Sci Rep 2019; 9:8907. [PMID: 31222132 PMCID: PMC6586656 DOI: 10.1038/s41598-019-45193-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2019] [Accepted: 05/30/2019] [Indexed: 12/17/2022] Open
Abstract
Heat shock proteins/cognates 70 are chaperones essential for proper protein folding. This protein family comprises inducible members (Hsp70s) with expression triggered by the increased concentration of misfolded proteins due to protein-destabilizing conditions, as well as constitutively expressed cognate members (Hsc70s). Previous works on non-model amphipod species Eulimnogammarus verrucosus and Eulimnogammarus cyaneus, both endemic to Lake Baikal in Eastern Siberia, have only revealed a constitutively expressed form, expression of which was moderately further induced by protein-destabilizing conditions. Here we describe heat-inducible hsp70s in these species. Contrary to the common approach of using sequence similarity with hsp/hsc70 of a wide spectrum of organisms and some characteristic features, such as absence of introns within genes and presence of heat shock elements in their promoter areas, the present study is based on next-generation sequencing for the studied or related species followed by differential expression analysis, quantitative PCR validation and detailed investigation of the predicted polypeptide sequences. This approach allowed us to describe a novel type of hsp70 transcripts that overexpress in response to heat shock. Moreover, we propose diagnostic sequence features of this Hsp70 type for amphipods. Phylogenetic comparisons with different types of Hsp/Hsc70s allowed us to suggest that the hsp/hsc70 gene family in Amphipoda diversified into cognate and heat-inducible paralogs independently from other crustaceans. Thus, the cognate and inducible hsp70 types in distant taxa may not be recognized by sequence similarity.
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7
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Tikhomirova TS, Galzitskaya OV. Functionally Significant Amino Acid Motifs of Heat Shock Proteins: Structural and Bioinformatics Analyses of Hsp60/Hsp10 in Five Classes of Chordata. Mol Biol 2018. [DOI: 10.1134/s0026893318050138] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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8
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Poynton HC, Hasenbein S, Benoit JB, Sepulveda MS, Poelchau MF, Hughes DST, Murali SC, Chen S, Glastad KM, Goodisman MAD, Werren JH, Vineis JH, Bowen JL, Friedrich M, Jones J, Robertson HM, Feyereisen R, Mechler-Hickson A, Mathers N, Lee CE, Colbourne JK, Biales A, Johnston JS, Wellborn GA, Rosendale AJ, Cridge AG, Munoz-Torres MC, Bain PA, Manny AR, Major KM, Lambert FN, Vulpe CD, Tuck P, Blalock BJ, Lin YY, Smith ME, Ochoa-Acuña H, Chen MJM, Childers CP, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Gibbs RA, Richards S. The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:6009-6022. [PMID: 29634279 DOI: 10.15482/usda.adc/1415994] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Hyalella azteca is a cryptic species complex of epibenthic amphipods of interest to ecotoxicology and evolutionary biology. It is the primary crustacean used in North America for sediment toxicity testing and an emerging model for molecular ecotoxicology. To provide molecular resources for sediment quality assessments and evolutionary studies, we sequenced, assembled, and annotated the genome of the H. azteca U.S. Lab Strain. The genome quality and completeness is comparable with other ecotoxicological model species. Through targeted investigation and use of gene expression data sets of H. azteca exposed to pesticides, metals, and other emerging contaminants, we annotated and characterized the major gene families involved in sequestration, detoxification, oxidative stress, and toxicant response. Our results revealed gene loss related to light sensing, but a large expansion in chemoreceptors, likely underlying sensory shifts necessary in their low light habitats. Gene family expansions were also noted for cytochrome P450 genes, cuticle proteins, ion transporters, and include recent gene duplications in the metal sequestration protein, metallothionein. Mapping of differentially expressed transcripts to the genome significantly increased the ability to functionally annotate toxicant responsive genes. The H. azteca genome will greatly facilitate development of genomic tools for environmental assessments and promote an understanding of how evolution shapes toxicological pathways with implications for environmental and human health.
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Affiliation(s)
- Helen C Poynton
- School for the Environment , University of Massachusetts Boston , Boston , Massachusetts 02125 United States
| | - Simone Hasenbein
- Aquatic Systems Biology Unit , Technical University of Munich , D-85354 Freising , Germany
| | - Joshua B Benoit
- Department of Biological Sciences , University of Cincinnati , Cincinnati , Ohio 45221 United States
| | - Maria S Sepulveda
- Forestry and Natural Resources , Purdue University , West Lafayette , Indiana 47907 United States
| | - Monica F Poelchau
- Agricultural Research Service, National Agricultural Library , U.S. Department of Agriculture , Beltsville , Maryland 20705 United States
| | - Daniel S T Hughes
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Shwetha C Murali
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Shuai Chen
- Forestry and Natural Resources , Purdue University , West Lafayette , Indiana 47907 United States
- OmicSoft Corporation, Cary , North Carolina 27513 United States
| | - Karl M Glastad
- Perelman School of Medicine , University of Pennsylvania , Philadelphia , Pennsylvania 19104 United States
| | - Michael A D Goodisman
- School of Biological Sciences , Georgia Institute of Technology , Atlanta , Georgia 30332 United States
| | - John H Werren
- Biology Department , University of Rochester , Rochester , New York 14627 United States
| | - Joseph H Vineis
- Department of Marine and Environmental Sciences, Marine Science Center , Northeastern University , Nahant , Massachusetts 01908 United States
| | - Jennifer L Bowen
- Department of Marine and Environmental Sciences, Marine Science Center , Northeastern University , Nahant , Massachusetts 01908 United States
| | - Markus Friedrich
- Department of Biological Sciences , Wayne State University , Detroit Michigan 48202 United States
| | - Jeffery Jones
- Department of Biological Sciences , Wayne State University , Detroit Michigan 48202 United States
| | - Hugh M Robertson
- Department of Entomology , University of Illinois at Urbana-Champaign , Urbana , Illinois 61801 United States
| | - René Feyereisen
- Department of Plant and Environmental Sciences , University of Copenhagen , DK-1871 Frederiksberg , Denmark
| | - Alexandra Mechler-Hickson
- Center of Rapid Evolution (CORE) and Department of Integrative Biology , University of Wisconsin , Madison , Wisconsin 53706 United States
| | - Nicholas Mathers
- Center of Rapid Evolution (CORE) and Department of Integrative Biology , University of Wisconsin , Madison , Wisconsin 53706 United States
| | - Carol Eunmi Lee
- Center of Rapid Evolution (CORE) and Department of Integrative Biology , University of Wisconsin , Madison , Wisconsin 53706 United States
| | - John K Colbourne
- School of Biosciences , University of Birmingham , Birmingham B15 2TT U.K
| | - Adam Biales
- National Exposure Research Laboratory , United States Environmental Protection Agency , Cincinnati , Ohio 45268 United States
| | - J Spencer Johnston
- Department of Entomology , Texas A&M University , College Station , Texas 77843 United States
| | - Gary A Wellborn
- Department of Biology , University of Oklahoma , Norman , Oklahoma 73019 United States
| | - Andrew J Rosendale
- Department of Biological Sciences , University of Cincinnati , Cincinnati , Ohio 45221 United States
| | - Andrew G Cridge
- Laboratory for Evolution and Development, Department of Biochemistry , University of Otago , Dunedin , 9054 New Zealand
| | - Monica C Munoz-Torres
- Environmental Genomics and Systems Biology Division , Lawrence Berkeley National Laboratory , Berkeley , California 94720 United States
| | - Peter A Bain
- Commonwealth Scientific and Industrial Research Organisation (CSIRO), Urrbrae SA 5064 Australia
| | - Austin R Manny
- Department of Microbiology & Cell Science , University of Florida , Gainesville , Florida 32611 United States
| | - Kaley M Major
- School for the Environment , University of Massachusetts Boston , Boston , Massachusetts 02125 United States
| | - Faith N Lambert
- Center for Environmental and Human Toxicology, Department of Physiological Sciences , University of Florida , Gainesville , Florida 32611 United States
| | - Chris D Vulpe
- Center for Environmental and Human Toxicology, Department of Physiological Sciences , University of Florida , Gainesville , Florida 32611 United States
| | - Padrig Tuck
- School for the Environment , University of Massachusetts Boston , Boston , Massachusetts 02125 United States
| | - Bonnie J Blalock
- School for the Environment , University of Massachusetts Boston , Boston , Massachusetts 02125 United States
| | - Yu-Yu Lin
- Graduate Institute of Biomedical Electronics and Bioinformatics , National Taiwan University , Taipei , 10617 Taiwan
| | - Mark E Smith
- McConnell Group, Cincinnati , Ohio 45268 , United States
| | - Hugo Ochoa-Acuña
- Forestry and Natural Resources , Purdue University , West Lafayette , Indiana 47907 United States
| | - Mei-Ju May Chen
- Graduate Institute of Biomedical Electronics and Bioinformatics , National Taiwan University , Taipei , 10617 Taiwan
| | - Christopher P Childers
- Agricultural Research Service, National Agricultural Library , U.S. Department of Agriculture , Beltsville , Maryland 20705 United States
| | - Jiaxin Qu
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Shannon Dugan
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Sandra L Lee
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Hsu Chao
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Huyen Dinh
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Yi Han
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | | | - Kim C Worley
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
- Department of Molecular and Human Genetics , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Donna M Muzny
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Richard A Gibbs
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Stephen Richards
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
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9
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Poynton HC, Hasenbein S, Benoit JB, Sepulveda MS, Poelchau MF, Hughes DST, Murali SC, Chen S, Glastad KM, Goodisman MAD, Werren JH, Vineis JH, Bowen JL, Friedrich M, Jones J, Robertson HM, Feyereisen R, Mechler-Hickson A, Mathers N, Lee CE, Colbourne JK, Biales A, Johnston JS, Wellborn GA, Rosendale AJ, Cridge AG, Munoz-Torres MC, Bain PA, Manny AR, Major KM, Lambert FN, Vulpe CD, Tuck P, Blalock BJ, Lin YY, Smith ME, Ochoa-Acuña H, Chen MJM, Childers CP, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Gibbs RA, Richards S. The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:6009-6022. [PMID: 29634279 PMCID: PMC6091588 DOI: 10.1021/acs.est.8b00837] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Hyalella azteca is a cryptic species complex of epibenthic amphipods of interest to ecotoxicology and evolutionary biology. It is the primary crustacean used in North America for sediment toxicity testing and an emerging model for molecular ecotoxicology. To provide molecular resources for sediment quality assessments and evolutionary studies, we sequenced, assembled, and annotated the genome of the H. azteca U.S. Lab Strain. The genome quality and completeness is comparable with other ecotoxicological model species. Through targeted investigation and use of gene expression data sets of H. azteca exposed to pesticides, metals, and other emerging contaminants, we annotated and characterized the major gene families involved in sequestration, detoxification, oxidative stress, and toxicant response. Our results revealed gene loss related to light sensing, but a large expansion in chemoreceptors, likely underlying sensory shifts necessary in their low light habitats. Gene family expansions were also noted for cytochrome P450 genes, cuticle proteins, ion transporters, and include recent gene duplications in the metal sequestration protein, metallothionein. Mapping of differentially expressed transcripts to the genome significantly increased the ability to functionally annotate toxicant responsive genes. The H. azteca genome will greatly facilitate development of genomic tools for environmental assessments and promote an understanding of how evolution shapes toxicological pathways with implications for environmental and human health.
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Affiliation(s)
- Helen C Poynton
- School for the Environment , University of Massachusetts Boston , Boston , Massachusetts 02125 United States
| | - Simone Hasenbein
- Aquatic Systems Biology Unit , Technical University of Munich , D-85354 Freising , Germany
| | - Joshua B Benoit
- Department of Biological Sciences , University of Cincinnati , Cincinnati , Ohio 45221 United States
| | - Maria S Sepulveda
- Forestry and Natural Resources , Purdue University , West Lafayette , Indiana 47907 United States
| | - Monica F Poelchau
- Agricultural Research Service, National Agricultural Library , U.S. Department of Agriculture , Beltsville , Maryland 20705 United States
| | - Daniel S T Hughes
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Shwetha C Murali
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Shuai Chen
- Forestry and Natural Resources , Purdue University , West Lafayette , Indiana 47907 United States
- OmicSoft Corporation, Cary , North Carolina 27513 United States
| | - Karl M Glastad
- Perelman School of Medicine , University of Pennsylvania , Philadelphia , Pennsylvania 19104 United States
| | - Michael A D Goodisman
- School of Biological Sciences , Georgia Institute of Technology , Atlanta , Georgia 30332 United States
| | - John H Werren
- Biology Department , University of Rochester , Rochester , New York 14627 United States
| | - Joseph H Vineis
- Department of Marine and Environmental Sciences, Marine Science Center , Northeastern University , Nahant , Massachusetts 01908 United States
| | - Jennifer L Bowen
- Department of Marine and Environmental Sciences, Marine Science Center , Northeastern University , Nahant , Massachusetts 01908 United States
| | - Markus Friedrich
- Department of Biological Sciences , Wayne State University , Detroit Michigan 48202 United States
| | - Jeffery Jones
- Department of Biological Sciences , Wayne State University , Detroit Michigan 48202 United States
| | - Hugh M Robertson
- Department of Entomology , University of Illinois at Urbana-Champaign , Urbana , Illinois 61801 United States
| | - René Feyereisen
- Department of Plant and Environmental Sciences , University of Copenhagen , DK-1871 Frederiksberg , Denmark
| | - Alexandra Mechler-Hickson
- Center of Rapid Evolution (CORE) and Department of Integrative Biology , University of Wisconsin , Madison , Wisconsin 53706 United States
| | - Nicholas Mathers
- Center of Rapid Evolution (CORE) and Department of Integrative Biology , University of Wisconsin , Madison , Wisconsin 53706 United States
| | - Carol Eunmi Lee
- Center of Rapid Evolution (CORE) and Department of Integrative Biology , University of Wisconsin , Madison , Wisconsin 53706 United States
| | - John K Colbourne
- School of Biosciences , University of Birmingham , Birmingham B15 2TT U.K
| | - Adam Biales
- National Exposure Research Laboratory , United States Environmental Protection Agency , Cincinnati , Ohio 45268 United States
| | - J Spencer Johnston
- Department of Entomology , Texas A&M University , College Station , Texas 77843 United States
| | - Gary A Wellborn
- Department of Biology , University of Oklahoma , Norman , Oklahoma 73019 United States
| | - Andrew J Rosendale
- Department of Biological Sciences , University of Cincinnati , Cincinnati , Ohio 45221 United States
| | - Andrew G Cridge
- Laboratory for Evolution and Development, Department of Biochemistry , University of Otago , Dunedin , 9054 New Zealand
| | - Monica C Munoz-Torres
- Environmental Genomics and Systems Biology Division , Lawrence Berkeley National Laboratory , Berkeley , California 94720 United States
| | - Peter A Bain
- Commonwealth Scientific and Industrial Research Organisation (CSIRO), Urrbrae SA 5064 Australia
| | - Austin R Manny
- Department of Microbiology & Cell Science , University of Florida , Gainesville , Florida 32611 United States
| | - Kaley M Major
- School for the Environment , University of Massachusetts Boston , Boston , Massachusetts 02125 United States
| | - Faith N Lambert
- Center for Environmental and Human Toxicology, Department of Physiological Sciences , University of Florida , Gainesville , Florida 32611 United States
| | - Chris D Vulpe
- Center for Environmental and Human Toxicology, Department of Physiological Sciences , University of Florida , Gainesville , Florida 32611 United States
| | - Padrig Tuck
- School for the Environment , University of Massachusetts Boston , Boston , Massachusetts 02125 United States
| | - Bonnie J Blalock
- School for the Environment , University of Massachusetts Boston , Boston , Massachusetts 02125 United States
| | - Yu-Yu Lin
- Graduate Institute of Biomedical Electronics and Bioinformatics , National Taiwan University , Taipei , 10617 Taiwan
| | - Mark E Smith
- McConnell Group, Cincinnati , Ohio 45268 , United States
| | - Hugo Ochoa-Acuña
- Forestry and Natural Resources , Purdue University , West Lafayette , Indiana 47907 United States
| | - Mei-Ju May Chen
- Graduate Institute of Biomedical Electronics and Bioinformatics , National Taiwan University , Taipei , 10617 Taiwan
| | - Christopher P Childers
- Agricultural Research Service, National Agricultural Library , U.S. Department of Agriculture , Beltsville , Maryland 20705 United States
| | - Jiaxin Qu
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Shannon Dugan
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Sandra L Lee
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Hsu Chao
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Huyen Dinh
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Yi Han
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | | | - Kim C Worley
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
- Department of Molecular and Human Genetics , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Donna M Muzny
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Richard A Gibbs
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
| | - Stephen Richards
- Human Genome Sequencing Center , Baylor College of Medicine , Houston , Texas 77030 United States
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10
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Manee MM, Alharbi SN, Algarni AT, Alghamdi WM, Altammami MA, Alkhrayef MN, Alnafjan BM. Molecular cloning, bioinformatics analysis, and expression of small heat shock protein beta-1 from Camelus dromedarius, Arabian camel. PLoS One 2017; 12:e0189905. [PMID: 29287083 PMCID: PMC5747437 DOI: 10.1371/journal.pone.0189905] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Accepted: 12/04/2017] [Indexed: 11/18/2022] Open
Abstract
Small heat shock protein beta-1 (HSPB-1) plays an essential role in the protection of cells against environmental stress.Elucidation of its molecular, structural, and biological characteristics in a naturally wild-type model is essential. Although the sequence information of the HSPB-1 gene is available for many mammalian species, the HSPB-1 gene of Arabian camel (Arabian camel HSPB-1) has not yet been structurally characterized. We cloned and functionally characterized a full-length of Arabian camel HSPB-1 cDNA. It is 791 bp long, with a 5′-untranslated region (UTR) of 34 bp, a 3′-UTR of 151 bp with a poly(A) tail, and an open reading frame (ORF) of 606 bp encoding a protein of 201 amino acids (accession number: MF278354). The tissue-specific expression analysis of Arabian camel HSPB-1 mRNA was examined using quantitative real-time PCR (qRT-PCR); which suggested that Arabian camel HSPB-1 mRNA was constitutionally expressed in all examined tissues of Arabian camel, with the predominately level in the esophagus tissue. Peptide mass fingerprint-mass spectrometry (PMF-MS) analysis of the purified Arabian camel HSPB-1 protein confirmed the identity of this protein. Phylogenetic analysis showed that the HSPB-1 protein of Arabian camel is grouped together with those of Bactrian camel and Alpaca. Comparing the modelled 3D structure of Arabian camel HSPB-1 protein with the available protein 3D structure of HSPB-1 from human confirmed the presence of α-crystallin domain, and high similarities were noted between the two structures by using super secondary structure prediction.
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Affiliation(s)
- Manee M. Manee
- National Center for Genomic Technology, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
- Center of Excellence for Genomics (CEG), King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
| | - Sultan N. Alharbi
- Center of Excellence for Genomics (CEG), King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
- National Center for Stem Cell Technology, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
- * E-mail:
| | - Abdulmalek T. Algarni
- National Center for Genomic Technology, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
- Center of Excellence for Genomics (CEG), King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
| | - Waleed M. Alghamdi
- Institute of Innovation and Industrial Development, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
| | - Musaad A. Altammami
- National Center for Biotechnology, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
| | - Mohammad N. Alkhrayef
- National Center for Stem Cell Technology, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
| | - Basel M. Alnafjan
- National Center for Stem Cell Technology, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
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