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Phukon H, Harshvardhan K, Sarma N, Kumar P, Lal M, Kalita D. Isolation and identification of Methylobacterium komagatae and its application in textile industries. Nat Prod Res 2025; 39:2831-2841. [PMID: 38389289 DOI: 10.1080/14786419.2024.2318787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 01/19/2024] [Accepted: 02/07/2024] [Indexed: 02/24/2024]
Abstract
A light pink-coloured, rod-shaped, gram-negative bacterium isolated from an unproductive crude oil production area was considered as a sample for this study. The 16S rRNA gene sequence identified the isolate as Methylobacterium komagatae. Comparing the standard colour measurement values set by the International Commission on Illumination (CIE) method confirms the colourant produced by the biomass of this microorganism as a 'light pink' colouration. The energy-dispersive X-ray spectroscopy and High-Resolution Mass Spectroscopy process help in the structural elucidation of the sample. It indicates the presence of magnesium (Mg) as a central metal atom in the bacterial colourant, i.e. 'bacteriochlorophyll' (BChl) (MgC55H74N4O). The recovered bacterial colourant was applied to cotton fabric and cotton yarns to dye and examine their fastness quality. The result shows the cotton fabrics retained colourant in normal washing while it got reduced after detergent-based washing. Therefore, its fastness quality must be improved to equalise with current colourants.
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Affiliation(s)
- Hridoyjit Phukon
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India
- Agro-technology and Rural Development Division (ARDD), North East Institute of Science and Technology, Jorhat, Assam, India
| | - Kumar Harshvardhan
- Agro-technology and Rural Development Division (ARDD), North East Institute of Science and Technology, Jorhat, Assam, India
| | - Neelav Sarma
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India
- Agro-technology and Rural Development Division (ARDD), North East Institute of Science and Technology, Jorhat, Assam, India
| | - Pankaj Kumar
- Department of Botany and Microbiology, Hemwati Nandan Bahuguna Garhwal University (A Central University), Srinagar Garhwal, Uttarakhand, India
| | - Mohan Lal
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India
- Agro-technology and Rural Development Division (ARDD), North East Institute of Science and Technology, Jorhat, Assam, India
| | - Dipul Kalita
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India
- Agro-technology and Rural Development Division (ARDD), North East Institute of Science and Technology, Jorhat, Assam, India
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2
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Hazra S, Majumdar D, Philip JE, Gassoumi B, Frontera A, Roy S, Ghalla H, Dalai S. 8-Aminoquinoline-Based Promising Zn Complexes with Dicyanamide and Tricyanomethane Anions: Supramolecular R 4 4(8)/ R 2 2(16) Synthons, DFT Rationalization, and Biological Insights. ACS OMEGA 2025; 10:14770-14786. [PMID: 40290975 PMCID: PMC12019732 DOI: 10.1021/acsomega.4c09312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/11/2024] [Revised: 03/27/2025] [Accepted: 03/31/2025] [Indexed: 04/30/2025]
Abstract
Considering the new crystal engineering integrity utilizing the DFT and the issues surrounding antimicrobial resistance in complexes, there is a pressing need to tackle antifungal photodynamic therapy about global health challenges. Within the sphere of this study, we meticulously introduce the synthesis, characterization, and single-crystal structure of two 8-aminoquinoline-based Zn complexes [Zn{(8-AMQ) (X)}2], X = dca (1) and TCM (2). The X-ray study reveals that the complexes crystallize in the monoclinic and triclinic space groups P21/c and P-1. The crystal packing in both complexes feature N-H···N hydrogen bonds as well as weak C-H···N interactions. The Hirshfeld surface provides quantitative insight into various supramolecular interactions, including π···π stacking, at large Cg···Cg distances. FMO supports the complexes' conductive behavior, excellent stability, and reactivity parameters. DOS investigation suggests good conductivity and reactivity properties. NBO analyzed that 2 exhibits a greater reactive and high potential charge transfer mechanism. The QTAIM/NCI-RDG plot ensured N···Zn/H···N interactions and explored new supramolecular R 4 4 (8)/R 2 2(16) crystal engineering synthons. The Trypan blue exclusion method was used to evaluate cytotoxicity against the DLA cell line, demonstrating 1's effectiveness against the cell, the lowest % of cell death, and a promising anticancer agent. The Zn complex antifungal photodynamic therapy finding showed significant activity against C. albicans.
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Affiliation(s)
- Suman Hazra
- Department
of Chemistry, Tamralipta Mahavidyalaya, Tamluk, West Bengal 721636, India
- Department
of Chemistry and Chemical Technology, Vidyasagar
University, Midnapore, West Bengal 721102, India
| | - Dhrubajyoti Majumdar
- Department
of Chemistry, Tamralipta Mahavidyalaya, Tamluk, West Bengal 721636, India
| | | | - Bouzid Gassoumi
- Laboratory
of Advanced Materials and Interfaces (LIMA), Faculty of Sciences of
Monastir, Avenue of Environment, University
of Monastir, Monastir 5000, Tunisia
| | - Antonio Frontera
- Department
de Quimica, Universitat de les Illes Balears, Cra. de Valldemossa km 7.5., Palma de Mallorca (Baleares) 07122, Spain
| | - Sourav Roy
- Solid State
and Structural Chemistry Unit, Indian Institute
of Science, Bangalore 560 012, India
| | - Houcine Ghalla
- Quantum and
Statistical Physics Laboratory, Faculty of Science, University of Monastir, Monastir 5079, Tunisia
| | - Sudipta Dalai
- Department
of Chemistry and Chemical Technology, Vidyasagar
University, Midnapore, West Bengal 721102, India
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3
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Wu P, Wei L, Yao R, Liu B, Yang SL, Qiao L, Wang X, Gong W, Liu Y, Cui Y, Dong J. Recent Advances in Crystalline Porous Materials for Antibacterial Applications. Chem Asian J 2025:e202401961. [PMID: 40195822 DOI: 10.1002/asia.202401961] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2024] [Revised: 03/20/2025] [Accepted: 03/24/2025] [Indexed: 04/09/2025]
Abstract
Bacterial infections remain a significant and escalating threat to global health, exacerbated by multidrug-resistant strains that undermine the efficacy of conventional antibiotics. This pressing issue underscores the urgent need for the development of new antimicrobial materials. Among these, molecular-based crystalline porous materials, such as metal-organic frameworks (MOFs), covalent organic frameworks (COFs), hydrogen-bonded organic frameworks (HOFs), and supramolecular assembly frameworks (SAFs), have emerged as a promising class of antibacterial agents. These materials exhibit well-defined crystallinity and tunable structures, offering exceptional versatility for antibacterial applications. Notably, their high surface area, adjustable pore size, and potential for functionalization enable efficient loading and controlled release of antibacterial agents, including metal ions and antibacterial molecules. This review provides a comprehensive analysis of recent advancements in this field, highlighting design strategies, structural diversity, antibacterial mechanisms, and applications. Finally, we discuss the current challenges and outline future opportunities for the practical development and deployment of antibacterial porous materials.
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Affiliation(s)
- Peijie Wu
- School of Chemistry and Chemical Engineering and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China
| | - Luofei Wei
- School of Chemistry and Chemical Engineering and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China
| | - Rui Yao
- School of Chemistry and Chemical Engineering and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China
| | - Bingyu Liu
- School of Chemistry and Chemical Engineering and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China
| | - Shuai-Liang Yang
- School of Chemistry and Chemical Engineering and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China
| | - Liang Qiao
- School of Chemistry and Chemical Engineering and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China
| | - Xiao Wang
- School of Chemistry and Chemical Engineering and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China
| | - Wei Gong
- School of Chemistry and Chemical Engineering and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China
| | - Yan Liu
- School of Chemistry and Chemical Engineering and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China
| | - Yong Cui
- School of Chemistry and Chemical Engineering and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China
| | - Jinqiao Dong
- School of Chemistry and Chemical Engineering and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China
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Singh SK, Bagul A, Tufail A, Alam P, Kulkarni SW, Sharma S, Dubey A. Synthesis, characterization, and bioactivity of Cu(II), Fe(II), Co(II), Ni(II), and Mn(II) complexes with benzilmonoximethiocarbohydrazide-O-methoxybenzaldehyde: experimental and computational insights. Biometals 2025; 38:245-274. [PMID: 39612061 DOI: 10.1007/s10534-024-00652-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2024] [Accepted: 11/14/2024] [Indexed: 11/30/2024]
Abstract
In this study, a novel ligand, benzilmonoximethiocarbohydrazide-O-methoxybenzaldehyde (HBMToMB), was synthesized and subsequently complexed with Cu(II), Fe(II), Co(II), Ni(II), and Mn(II) ions. The metal complexes were comprehensively characterized using techniques such as NMR, IR, Mass Spectrometry, UV-Vis, elemental analysis (CHNS), and magnetic susceptibility measurements. The complexes exhibited superior antibacterial and antifungal activity compared to the free ligand. In addition, cytotoxicity was evaluated using the brine shrimp lethality bioassay, demonstrating significant activity. Computational studies, including molecular docking, DFT, and ADMET analysis, provided further insights into the compounds' binding affinities and electronic properties. These findings underscore the potential of these metal complexes as promising candidates for therapeutic applications, particularly in antimicrobial and anticancer therapies.
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Affiliation(s)
- Shravan Kumar Singh
- Department of Chemistry, Lovely Professional University, Phagwara, Punjab, 144411, India
| | - Abhay Bagul
- Department of Chemistry, Vasantrao Naik Mahavidhyalaya, Aurangabad, Maharashtra, 431003, India
- Department of Forensic Chemistry, Government Institute of Forensic Sciences, Aurangabad, Maharashtra, 431004, India
| | - Aisha Tufail
- Computational Chemistry and Drug Discovery Division, Quanta Calculus, Greater Noida, Uttar Pradesh, 201310, India
| | - Perwez Alam
- Department of Pharmacognosy, College of Pharmacy, King Saud University, P.O. Box 2457, 11451, Riyadh, Saudi Arabia
| | - Santosh Waman Kulkarni
- K. M. Agrawal College of Arts, Commerce and Science, Kalyan (W), Thane, University of Mumbai Mumbai, Maharashtra, 421301, India
| | - Sheetal Sharma
- Department of Chemistry, Lovely Professional University, Phagwara, Punjab, 144411, India.
| | - Amit Dubey
- Center for Global Health Research, Saveetha Medical College and Hospitals, Saveetha Institute of Medical and Technical Sciences, Chennai, Tamil Nadu, India.
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5
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Alhawarri MB, Al-Thiabat MG, Dubey A, Tufail A, Banisalman K, Al Jabal GA, Alkasasbeh E, Al-Trad EI, Alrimawi BH. Targeting necroptosis in MCF-7 breast cancer cells: In Silico insights into 8,12-dimethoxysanguinarine from Eomecon Chionantha through molecular docking, dynamics, DFT, and MEP studies. PLoS One 2025; 20:e0313094. [PMID: 39775383 PMCID: PMC11706375 DOI: 10.1371/journal.pone.0313094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Accepted: 10/05/2024] [Indexed: 01/11/2025] Open
Abstract
Breast cancer remains a significant challenge in oncology, highlighting the need for alternative therapeutic strategies that target necroptosis to overcome resistance to conventional therapies. Recent investigations into natural compounds have identified 8,12-dimethoxysanguinarine (SG-A) from Eomecon chionantha as a potential necroptosis inducer. This study presents the first computational exploration of SG-A interactions with key necroptotic proteins-RIPK1, RIPK3, and MLKL-through molecular docking, molecular dynamics (MD), density functional theory (DFT), and molecular electrostatic potential (MEP) analyses. Molecular docking revealed that SG-A exhibited a stronger affinity for MLKL (-9.40 kcal/mol) compared to the co-crystallized ligand (-6.29 kcal/mol), while its affinity for RIPK1 (-6.37 kcal/mol) and RIPK3 (-7.01 kcal/mol) was lower. MD simulations further demonstrated the stability of SG-A within the MLKL site, with RMSD values stabilizing between 1.4 and 3.3 Å over 300 ns, indicating a consistent interaction pattern. RMSF analysis indicated the preservation of protein backbone flexibility, with average fluctuations under 1.7 Å. The radius of gyration (Rg) results indicated a consistent value of ~15.3 Å across systems, confirming the role of SG-A in maintaining protein integrity. Notably, SG-A maintains two critical H-bonds within the active site of MLKL, reinforcing the stability of the interaction. Principal component analysis (PCA) indicated a significant reduction in MLKL's conformational space upon SG-A binding, implying enhanced stabilization. Dynamic cross-correlation map (DCCM) analysis further revealed that SG-A induced highly correlated motions, reducing internal fluctuations within MLKL compared to the co-crystallized ligand. MM-PBSA revealed the enhanced binding efficacy of SG-A, with a significant binding free energy of -31.03 ± 0.16 kcal/mol against MLKL, surpassing that of the control (23.96 ± 0.11 kcal/mol). In addition, the individual residue contribution analysis highlighted key interactions, with ARG149 showing a significant contribution (-176.24 kcal/mol) in the MLKL-SG-A complex. DFT and MEP studies corroborated these findings, revealing that the electronic structure of SG-A is conducive to stable binding interactions, characterized by a narrow band gap (~0.16 units) and distinct electrostatic potential favourable for necroptosis induction. In conclusion, SG-A has emerged as a compelling inducer of necroptosis for breast cancer therapy, warranting further experimental validation to fully realize its therapeutic potential.
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Affiliation(s)
- Maram B. Alhawarri
- Faculty of Pharmacy, Department of Pharmacy, Jadara University, Irbid, Jordan
| | | | - Amit Dubey
- Department of Pharmacology, Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Sciences, Chennai, Tamil Nadu, India
- Computational Chemistry and Drug Discovery Division, Quanta Calculus, Greater Noida, Uttar Pradesh, India
| | - Aisha Tufail
- Computational Chemistry and Drug Discovery Division, Quanta Calculus, Greater Noida, Uttar Pradesh, India
| | - Katreen Banisalman
- Faculty of Pharmacy, Department of Pharmacy, Jadara University, Irbid, Jordan
| | - Ghazi A. Al Jabal
- Faculty of Pharmacy and Biomedical Sciences, Department of Medicinal Chemistry, MAHSA University, Jenjarom, Selangor, Malaysia
| | - Eman Alkasasbeh
- Faculty of Pharmacy, Department of Pharmacy, Jadara University, Irbid, Jordan
| | - Esra’a Ibrahim Al-Trad
- Faculty of Applied Medical Sciences, Department of Medical Laboratory Sciences, Al al-bayt University, Mafraq, Jordan
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6
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Kumar B, Devi J, Dubey A, Kumar M. Biological and Computational Studies of Hydrazone Based Transition Metal(II) Complexes. Chem Biodivers 2024; 21:e202401116. [PMID: 39039909 DOI: 10.1002/cbdv.202401116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Revised: 07/19/2024] [Accepted: 07/22/2024] [Indexed: 07/24/2024]
Abstract
In the chronicles of human history, infectious diseases played a pivotal role, influencing societies, steering advancements in medicine, and significantly impacting the well-being of people worldwide. Consequently, in the pursuit of identifying effective combating agents for infectious ailments, the Co(II), Ni(II), Cu(II), Zn(II) complexes of N'-(4-nitrobenzylidene)benzohydrazide were synthesized in the current investigation. Numerous spectral and physical analysis were conducted to characterize the compounds which revealed octahedral stereochemistry of complexes. The anti-tuberculosis, anti-inflammatory, antibacterial and antifungal investigations demonstrated that the compounds (1-5) have significant efficacy for these infectious ailments. The [Zn(L)2(H2O)2] complex (5) has comparable TB inhibition potency to streptomycin as shown by MIC value of 0.0196±0.0003 μmol/mL. Additionally, the anti-inflammatory, antibacterial and antifungal studies also revealed the comparable inhibiting property of (5) to standard drugs with significant IC50 (07.49±0.08 μM) and MIC (0.0098 μmol/mL) values. Furthermore, pharmacophore modeling with addition of molecular docking, DFT, MESP, ADMET were employed against compounds (1-5) to give a new insight in biological evaluations. The pharmacophore modeling suggested that (5) has a distinctive pharmacophoric features including cationic sites, hydrogen-bond donors and acceptors which provide valuable insights into rational drug design for specific pharmacological applications. Moreover, another in silico investigations authenticate the bioactivity of (5) through substantial binding affinities, binding energy, stability, hardness, electrophilicity etc. Overall, the combined computational and experimental results highlight the potential of [Zn(L)2(H2O)2] as a promising candidate for tuberculosis treatment, meriting further in vivo investigations.
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Affiliation(s)
- Binesh Kumar
- Department of Chemistry, Guru Jambheshwar University of Science and Technology, 125001, Hisar, Haryana, India
| | - Jai Devi
- Department of Chemistry, Guru Jambheshwar University of Science and Technology, 125001, Hisar, Haryana, India
| | - Amit Dubey
- Department of Pharmacology, Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Sciences, 600077, Chennai, Tamil Nadu, India
- Computational Chemistry and Drug Discovery Division, Quanta Calculus, 201310, Greater Noida,Uttar Pradesh, India
| | - Manish Kumar
- Department of Biochemistry, Iswar Saran Degree College, University of Allahabad, Prayagraj, 211002, India
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7
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Bhardwaj A, Dubey A, Tufail A, Tufail N, Kumar M, Garg S. Organotellurium (IV) complexes as anti-malarial agents: synthesis, characterization and computational insights. Future Med Chem 2024; 16:2263-2283. [PMID: 39311080 PMCID: PMC11622762 DOI: 10.1080/17568919.2024.2401310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2024] [Accepted: 08/28/2024] [Indexed: 12/08/2024] Open
Abstract
Aim: To synthesize and evaluate the antimalarial and antioxidant activities of novel organotellurium (IV) thiophene-based complexes.Materials & methods: Synthesized complexes were characterized using NMR, IR and mass spectrometry. Their biological activities were assessed using in vitro assays and molecular docking studies.Results: The complexes exhibited significant antimalarial activity against Plasmodium falciparum, with the highest activity observed for complexes 5b and 5e. ADMET properties confirmed their potential as therapeutic agents.
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Affiliation(s)
- Anisha Bhardwaj
- Department of Chemistry, Maharshi Dayanand University, Rohtak, 124001, Haryana, India
| | - Amit Dubey
- Department of Pharmacology, Saveetha Dental College & Hospital, Saveetha Institute of Medical & Technical Sciences, Chennai, 600077, Tamil Nadu, India
- Computational Chemistry & Drug Discovery Division, Quanta Calculus, Greater Noida, 201310, Uttar Pradesh, India
| | - Aisha Tufail
- Computational Chemistry & Drug Discovery Division, Quanta Calculus, Greater Noida, 201310, Uttar Pradesh, India
| | - Nasir Tufail
- Department of Zoology, Allahabad State University, Prayagraj, 211002, Uttar Pradesh, India
| | - Manish Kumar
- Department of Chemistry, Maharshi Dayanand University, Rohtak, 124001, Haryana, India
| | - Sapana Garg
- Department of Chemistry, Maharshi Dayanand University, Rohtak, 124001, Haryana, India
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8
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Kumar B, Devi J, Dubey A, Kumar M. Exploration of newly synthesized transition metal(II) complexes for infectious diseases. Future Med Chem 2024; 16:2087-2105. [PMID: 39295510 PMCID: PMC11559369 DOI: 10.1080/17568919.2024.2389766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Accepted: 08/02/2024] [Indexed: 09/21/2024] Open
Abstract
Aim: In the annals of human history, infectious diseases significantly influencing the collective well-being of people worldwide. Consequently, to identify effective agents for infectious ailments, the octahedral Co(II), Ni(II), Cu(II), Zn(II) complexes of 4-(3-methoxyphenyl)pyrimidin-2-amine and 2-methoxy-1-napthaldehyde based ligand were synthesized and well characterized in the current investigation.Results & methodology: The synthesized compounds were evaluated for anti-TB, anti-inflammatory, antibacterial, antifungal activities by microplate Alamar blue, bovine serum albumin, serial dilution assays. The [Zn(L1)2(H2O)2] complex (5) demonstrates robust potency with 0.0040 ± 0.0007 and 0.0038 μmol/ml MIC value in anti-tuberculosis and antimicrobial activities, correspondingly while 06.57 ± 0.03 μM IC50 value in anti-inflammatory investigation.Conclusion: Complex (5) show promising potential as targets for pathogen deformities, supported by rigorous biological and computational investigations including pharmacophore modelling, molecular docking (binding score -121.018 and -59.8662 kcal/mol for 6H53 and 1CX2 proteins, respectively), DFT (Density functional theory), MESP (Molecular Electrostatic Potential) and ADMET (absorption, distribution, metabolism, excretion and toxicity).
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Affiliation(s)
- Binesh Kumar
- Department of Chemistry, Guru Jambheshwar University of Science & Technology, Hisar, 125001, Haryana, India
| | - Jai Devi
- Department of Chemistry, Guru Jambheshwar University of Science & Technology, Hisar, 125001, Haryana, India
| | - Amit Dubey
- Department of Pharmacology, Saveetha Dental College & Hospital, Saveetha Institute of Medical & Technical Sciences, Chennai, 600077, Tamil Nadu, India
- Computational Chemistry & Drug Discovery Division, Quanta Calculus, Greater Noida, 201310, Uttar Pradesh, India
| | - Manish Kumar
- Department of Biochemistry, Iswar Saran Degree College, University of Allahabad, Prayagraj, 211002, India
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9
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ŞAHİN ZS, KARTAL Z. Synthesis, characterization, and Hirshfeld surface analysis of coordination compounds composed of two different aminopyridines, isothiocyanate ligand molecules, and two different transition metal atoms. Turk J Chem 2024; 48:780-799. [PMID: 39512740 PMCID: PMC11539913 DOI: 10.55730/1300-0527.3697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 10/24/2024] [Accepted: 09/17/2024] [Indexed: 11/15/2024] Open
Abstract
In this article, we describe the successful synthesis of three coordination compounds formed by the ligands 3-aminopyridine, 4-aminopyridine, and isothiocyanate ion with copper atoms and 4-aminopyridine and isothiocyanate ion with cadmium atoms, and their structural characterizations. The crystal structures of the compounds were determined by single crystal X-ray diffraction. According to that technique, the open formulae of these compounds are [Cu(3-aminopyridine)2(NCS)2] (1), [Cu(4-aminopyridine)3(NCS)2] (2), and [Cd(4-aminopyridine)2(NCS)Cl] (3). In addition, the suitability of the structures of the compounds was characterized by elemental analysis, thermal analysis, and Fourier transform infrared spectroscopy. The single crystal X-ray diffraction analyses of these coordination compounds showed that the first of these coordination compounds had a 1D crystal structure and the other two had a 3D crystal structure. N-H⋯S, N-H⋯N, N-H⋯Cl, N-H⋯π, and C-H⋯π bonds and their combinations were effective in the formation of the crystal structures of the said coordination compounds. The metal atoms [Cu(II), Cu(II), and Cd(II)] in these coordination compounds were surrounded by various ligand molecules in a square planar, square pyramidal, and octahedral arrangement, respectively. In order to investigate some chemical and structural properties of these coordination compounds, theoretical calculations were performed with the software package Gaussian 03. The highest occupied molecular orbital (HOMO), lowest occupied molecular orbital (LUMO), and natural bond orbital (NBO) values of the coordination compounds were used in these calculations. When the energy gap value between the HOMO and LUMO states of the compounds was examined, it was predicted that compound 3 may have lower kinetic stability, higher chemical activity, and lower semiconductor properties than all the other compounds. According to the Hirshfeld surface analysis of the compounds, C⋯H, S⋯H, H⋯H, and N⋯H interactions are generally seen in the crystal structures of all compounds. In addition, Cd⋯Cl, Cd⋯S, H⋯Cl, and Cl⋯Cl interactions also occur in compound 3.
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Affiliation(s)
- Zarife Sibel ŞAHİN
- Department of Energy Systems Engineering, Faculty of Engineering and Architecture, Sinop University, Sinop, Turkiye
| | - Zeki KARTAL
- Retired Professor of Atomic and Molecular Physics, Kütahya Dumlupınar University, Kütahya, Turkiye
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10
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Maddheshiya AK, Kumar M, Tufail A, Yadav PS, Deswal Y, Yadav N, Yadav TP, Dubey A. Synergistic Activity of Noble Trimetallic Nanofluids: Unveiling Unprecedented Antimicrobial Potential and Computational Insights. ACS APPLIED BIO MATERIALS 2024; 7:5906-5924. [PMID: 38722351 DOI: 10.1021/acsabm.3c01268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/27/2024]
Abstract
Nanofluids hold significant promise in diverse applications, particularly in biomedicine, where noble trimetallic nanofluids outperformed their monometallic counterparts. The composition, morphology, and size of these nanofluids play pivotal roles in their functionality. Controlled synthesis methods have garnered attention, focusing on precise morphology, content, biocompatibility, and versatile chemistry. Understanding how reaction parameters such as time, reducing agents, stabilizers, precursor concentration, temperature, and pH affect size and shape during synthesis is crucial. Trimetallic nanofluids, with their ideal composition, size, surface structure, and synergistic properties, are gaining traction in antimicrobial applications. These nanofluids were tested against seven microorganisms, demonstrating a heightened antimicrobial efficacy. Computational analyses, including molecular docking, dynamics, density functional theory (DFT), molecular electrostatic potential (MESP) analysis, and absorption, distribution, metabolism, elimination, and toxicology studies (ADMET) provided insights into binding interactions, energy, reactivity, and safety profiles, affirming the antimicrobial potential of trimetallic nanofluids. These findings emphasize the importance of controlled synthesis and computational validation in harnessing the unique properties of trimetallic nanofluids for biomedical applications.
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Affiliation(s)
- Ajit Kumar Maddheshiya
- Department of Physics, Faculty of Science, University of Allahabad, Prayagraj 211002, India
| | - Manish Kumar
- Department of Biochemistry, Iswar Saran Degree College (A Constituent PG College of University of Allahabad), Teliarganj, Prayagraj 211004, India
| | - Aisha Tufail
- Department of Computational Chemistry and Drug Discovery Division, Quanta Calculus, Greater Noida 201310, India
| | - Phool Singh Yadav
- Department of Physics, Faculty of Science, University of Allahabad, Prayagraj 211002, India
| | - Yogesh Deswal
- Department of Chemistry, Guru Jambheshwar University of Science and Technology, Hisar 125001, India
| | - Navneet Yadav
- Department of Physics, Faculty of Science, University of Allahabad, Prayagraj 211002, India
| | - Thakur Prasad Yadav
- Department of Physics, Faculty of Science, University of Allahabad, Prayagraj 211002, India
| | - Amit Dubey
- Department of Pharmacology, Saveetha Dental College, and Hospitals, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai 600077, Tamil Nadu, India
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11
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Bagul AD, Kumar M, Alanazi AM, Tufail A, Tufail N, Gaikwad DD, Dubey A. Experimental and computational evaluation of anti-malarial and antioxidant potential of transition metal (II) complexes with tridentate schiff base derived from pyrrolopyrimidine. Biometals 2024:10.1007/s10534-024-00636-8. [PMID: 39271604 DOI: 10.1007/s10534-024-00636-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Accepted: 08/30/2024] [Indexed: 09/15/2024]
Abstract
In the twenty-first century, we are experiencing persistent waves of diverse pathogen variations, contributing significantly to global illness and death rates. Within this varied spectrum of illnesses, malaria and oxidative damage emerge as prominent obstacles that have persistently affected human health. The motivation for exploring the antioxidant potential of transition metal (II) complexes with tridentate Schiff base ligands is driven by the need for effective treatments against malaria and oxidative stress-related conditions. Both malaria and oxidative damage are significant global health concerns. Transition metal complexes can potentially offer enhanced anti-malarial and antioxidant activities, providing a dual benefit. To explore the aforementioned facts and examine the therapeutic potential, the previously synthesized pyrrolopyrimidinehydrazide-3-chlorobenzaldehyde, such as HPPHmCB ligand(1)andtheirMn(II),Fe(II),Co(II),Ni(II), Pd(II),Cu(II),Zn(II),Cd(II),Hg(II)complexes(2-10) of benzaldehydes and pyrrolopyrimidinehydrazide were proposed for in vitro anti-malarial and antioxidant investigation. These compounds were assessed for their anti-malarial efficacy against Plasmodium falciparum using a micro assay protocol, with IC50 values indicating the concentration required to inhibit parasite maturation by 50%. The Hg(II) complex displays pronounced antimalarial activity with an IC50 value of 1.98 ± 0.08 µM, closely aligning with the efficacy of quinine, whereas Zn(II), Cu(II), Pd(II) complexes demonstrates most significant anti-malarial activity, with IC50 values close to the reference compound quinine. The antioxidant activity of the compounds was evaluated using the DPPH assay, with several metal complexes such as Cu(II)and Zn(II) showing strong potential in neutralizing oxidative stress. Furthermore, molecular docking simulations were conducted to explore the binding interactions of the compounds with PfNDH2, providing insights into their pharmacological potential. The study also examined the electronic properties, solubility, and potential hepatotoxicity of the compounds. The findings suggest that the metal complexes could be promising candidates for further development as anti-malarial agents, offering enhanced potency compared to the base compound.
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Affiliation(s)
- Abhay D Bagul
- Department of Chemistry, Vasantrao Naik Mahavidhyalaya, Aurangabad, Maharashtra, 431003, India
- Department of Forensic Chemistry, Government Institute of Forensic Sciences, Aurangabad, Maharashtra, 431004, India
| | - Manish Kumar
- Department of Biochemistry, Iswar Saran Degree College, University of Allahabad (A Constituent PG College of University of Allahabad), Prayagraj, India
| | - Amer M Alanazi
- Pharmaceutical Biotechnology Laboratory, Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Aisha Tufail
- Computational Chemistry and Drug Discovery Division, Quanta Calculus, Greater Noida, Uttar Pradesh, 201310, India
| | - Nasir Tufail
- Department of Zoology, Chaudhary Mahadev Prasad Degree College, University of Allahabad, Prayagraj, 211002, India
| | - Digamber D Gaikwad
- Department of Forensic Chemistry, Government Institute of Forensic Sciences, Aurangabad, Maharashtra, 431004, India.
| | - Amit Dubey
- Department of Pharmacology, Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Sciences, Chennai, Tamil Nadu, 600077, India.
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12
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Mansour MSA, Abdelkarim AT, El-Sherif AA, Mahmoud WH. Metal complexes featuring a quinazoline schiff base ligand and glycine: synthesis, characterization, DFT and molecular docking analyses revealing their potent antibacterial, anti-helicobacter pylori, and Anti-COVID-19 activities. BMC Chem 2024; 18:150. [PMID: 39127681 DOI: 10.1186/s13065-024-01239-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Accepted: 06/28/2024] [Indexed: 08/12/2024] Open
Abstract
Mixed ligand complexes of manganese(II), cobalt(II), copper(II), and cadmium(II)with an innovative Schiff base ligand denoted as (L1), 4-(2-((1E,2E)-1-(2-(p-tolyl)hydrazineylidene)propan-2-ylidene)hydrazineyl), served as the principal ligand, while glycine (L2) was employed as secondary ligand were successfully effectively characterized through a comprehensive set of analyses, including Elemental analysis, UV-Visible, FT-IR, Mass spectra, and conductometric measurements. Density functional theory (DFT) computations were executed to discern the enduring electronic arrangement, the energy gap, dipole moment and chemical hardness of the hybrid ligand assemblies. The proposed geometry for the complexes is a distorted octahedral structure. The antimicrobial efficacy of these compounds was assessed against a range of bacterial and fungal strains. Notably, these complexes exhibited promising antimicrobial activities, with the cadmium (II) complex demonstrating superior efficacy towards all tested organisms. These compounds were also examined for their antibiotic properties against H. pylori to explore their broader medical potential. The Schiff base ligand and its corresponding metal complexes displayed substantial potential as an antibiotic against H. pylori. Additionally, the antitumor potential of the synthesized complexes was assessed against MCF-7 (Breast carcinoma) cells-the Cu (II) complex demonstrated superior activity with the lowest IC50 value compared to cisplatin. Moreover, it exhibited reduced cytotoxicity towards normal cells (VERO cells) compared to cisplatin, establishing it as the most potent compound in the study. Furthermore, molecular docking was explored of the Schiff base ligand and its corresponding cadmium(II) complex. The analysis of the docking study yielded valuable structural insights that can be effectively utilized in conducting inhibition studies for example against COVID-19. This comprehensive study highlights these synthesized compounds' multifaceted applications and promising bioactive properties.
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Affiliation(s)
- M S A Mansour
- Chemistry Department, Faculty of Science, Cairo University, Giza, 12613, Egypt
| | - Abeer T Abdelkarim
- Chemistry Department, Faculty of Science, Cairo University, Giza, 12613, Egypt
| | - Ahmed A El-Sherif
- Chemistry Department, Faculty of Science, Cairo University, Giza, 12613, Egypt
| | - Walaa H Mahmoud
- Chemistry Department, Faculty of Science, Cairo University, Giza, 12613, Egypt.
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13
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Gurbanov AV, Firoozbakht F, Pourshirband N, Sharafi-Badr P, Hayati P, Souri B, Eshghi F, Kaminsky W, Mahmoudi G, Verpoort F, Mehrabadi Z. A new 1D Mn(II) coordination polymer: Synthesis, crystal structure, hirshfeld surface analysis and molecular docking studies. Heliyon 2024; 10:e29565. [PMID: 38699722 PMCID: PMC11063412 DOI: 10.1016/j.heliyon.2024.e29565] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 04/10/2024] [Accepted: 04/10/2024] [Indexed: 05/05/2024] Open
Abstract
The synthesis of novel metal-organic coordination polymers (MOCP) with the chemical formula [Mn2L (SCN)2(OH)2]3·CH3OH [L = 1,5-bis(pyridine-4-ylmethylene) carbonohydrazide] {1} was accomplished using two different techniques: solvothermal and sonochemical ultrasonic-assisted. An investigation was carried out to examine the impact of various factors such as reaction time, sonication power, temperature, and reactant concentration on the morphology and size of the crystals. Interestingly, it was found that sonication power and temperature did not affect the crystals' morphology and size. To further analyze the prepared microcrystals of MOCPs, SEM was utilized to examine their surface morphology, and XRD, elemental evaluation composition. The identification of the functional groups present in the prepared Mn-MOCPs was accomplished through the utilization of FT-IR spectroscopy. Subsequently, the calcination of 1 in an air atmosphere at 650 °C led to the formation of Mn3O4 nanoparticles. The geometric and electronic structure of the MOCPs was evaluated using density functional theory (DFT). The utilization of molecular docking methodologies demonstrated that the best cavity of the human androgen receptor possessed an interaction energy of -116.3 kJ mol-1. This energy encompassed a combination of both bonding and non-bonding interactions. The Results showed that steric interaction and electrostatic potential are the main interactions in AR polymer and Mn(II). These interactions in the defined cavity indicated that this polymer could be an effective anti-prostate candidate, because AR is involved in the growth of prostate cancer cells, and these interactions indicated the inhibition of prostate cancer cell growth.
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Affiliation(s)
- Atash V. Gurbanov
- Centro de Química Estrutural, Institute of Molecular Sciences, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
- Excellence Center, Baku State University, Z. Khalilov Str. 23, AZ 1148 Baku, Azerbaijan
- Western Caspian University, Istiqlaliyyat Street 31, AZ 1001, Baku, Azerbaijan
| | - Fateme Firoozbakht
- Department of Chemistry, University of Isfahan, Isfahan 81746-73441, Iran
| | - Nafiseh Pourshirband
- Department of Chemistry, Shahreza Branch, Islamic Azad University, P.O. Box 311-86145, Shahreza, Isfahan, Iran
| | - Paria Sharafi-Badr
- Department of Pharmacognosy and Pharmaceutical Biotechnology, School of Pharmacy, Iran University of Medical Sciences, Tehran, Iran
| | - Payam Hayati
- Organic and Nano Group (ONG), Department of Chemistry, Iran University of Science and Technology (IUST), PO Box 16846-13114, Tehran, Iran
| | - Bagher Souri
- Department of Chemistry, Faculty of Sciences, University of Sistan and Baluchestan, Zahedan, Iran
| | - Fazlolah Eshghi
- Department of Chemistry, College of Sciences, Shiraz University, Shiraz, Iran
| | - Werner Kaminsky
- X-ray Crystallography Laboratory, University of Washington, United States
| | - Ghodrat Mahmoudi
- Department of Chemistry, Faculty of Science, University of Maragheh, P.O. Box 55136-83111, Maragheh, Iran
- Chemistry Department, Faculty of Engineering and Natural Sciences, Istinye University, Sarıyer, Istanbul 34396, Turkey
| | - Francis Verpoort
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, Wuhan 430070, China
| | - Zohreh Mehrabadi
- Department of Chemistry, Firoozabad Branch, Islamic Azad University, Firoozabad, Iran
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14
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Devi J, Kumar B, Dubey A, Tufail A, Boora A. Exploring the antimalarial and antioxidant efficacy of transition metal(II) chelates of thiosemicarbazone ligands: spectral investigations, molecular docking, DFT, MESP and ADMET. Biometals 2024; 37:247-265. [PMID: 37938497 DOI: 10.1007/s10534-023-00546-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Accepted: 09/29/2023] [Indexed: 11/09/2023]
Abstract
Malaria, a relentless and ancient adversary, continues to cast its shadow over vast swathes of the globe, afflicting millions of people and have a heavy toll on human health and well-being. Despite substantial progress in the fight against this parasitic disease in recent decades, malaria still persists as a substantial global health concern, especially in some specific region which have limited resources and vulnerable populations. Thus, to ascertain an combating agent for malaria and its associated dysfunction, 4-(4-ethylphenyl)-3-thiosemicarbazide and benzaldehydes based two new thiosemicarbazone ligands (1-2) and their cobalt(II), nickel(II), copper(II), zinc(II) metal complexes (3-10) were synthesized in the present research work. The synthesized compounds were comprehensive characterized through spectral and physical investigations, demonstrating octahedral stereochemistry of the complexes. Further, the antimalarial and antioxidant potential of the compounds (1-10) were analyzed by micro assay and DPPH assay protocols, respectively, to examine the therapeutic aspect of the compounds. The performed biological evaluations revealed that the complexes are more efficient in controlling infectious ailment in comparison of ligands. The complexes (5), (6), (10) shows significant efficiency for malarial and oxidant dysfunctions whereas Zn(II) complex (6) exhibit highest potency with 1.02 ± 0.07 and 2.28 ± 0.05 µM IC50 value. Furthermore, to support the highest antimalarial potency of the (3-6) complexes and their associated ligand (1), the computational studies like molecular docking, DFT, MESP and ADMET analysis were executed which were supported the biological efficacy of the complex (6) by providing numerous parameters like binding interaction electronegativity, electrophilicity, HOMO value and electron density.
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Affiliation(s)
- Jai Devi
- Department of Chemistry, Guru Jambheshwar University of Science and Technology, Hisar, Haryana, 125001, India.
| | - Binesh Kumar
- Department of Chemistry, Guru Jambheshwar University of Science and Technology, Hisar, Haryana, 125001, India
| | - Amit Dubey
- Department of Pharmacology, Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Sciences, Chennai, Tamil Nadu, 600077, India
- Computational Chemistry and Drug Discovery Division, Quanta Calculus, Greater Noida, Uttar Pradesh, 201310, India
| | - Aisha Tufail
- Computational Chemistry and Drug Discovery Division, Quanta Calculus, Greater Noida, Uttar Pradesh, 201310, India
| | - Ankit Boora
- Department of Chemistry, Guru Jambheshwar University of Science and Technology, Hisar, Haryana, 125001, India
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15
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Bai X, Jiang J, Tu S, Zhang W. Hydrogels Loaded with Atorvastatin-Metal Organic Framework Have a Preventive Effect on Coronary Heart Disease. Chem Biodivers 2024; 21:e202301511. [PMID: 38063816 DOI: 10.1002/cbdv.202301511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 11/29/2023] [Indexed: 02/22/2024]
Abstract
In the research, a new three-dimensional coordination polymer was synthesized by solvothermal method based on the metal ligand LCu =[Cu(2,4-pydca)2 ]2- (2,4-pydca=pyridine-2,4-dicarboxylate) and alkaline-earth ion CaII with chemical composition {[Ca(H2 O)2 ][LCu ]⋅DMSO ⋅ 2H2 O}n (1) (DMSO=dimethyl sulfoxide). The complex 1 was characterized soundly by Fourier transform infrared (FT-IR) spectroscopy, elemental analysis (EA), single-crystal X-ray diffraction (SCXRD) and thermogravimetric analysis (TGA). Using atorvastatin as drug model, carboxymethyl chitosan and calcium alginate as raw materials, a new type of metal gel particles was prepared. The microstructure of the gel was observed by scanning Electron Microscope (SEM) and its modulation effect on the activity of human cardiomyocytes was evaluated. The results show that the gel particles presented a three-dimensional porous structure and were able to significantly up-regulate the cell activity of human cardiomyocytes, which is expected to develop the metal gel particles into drugs for the treatment of coronary heart disease.
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Affiliation(s)
- Xinghua Bai
- Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
- Department of Cardiovascular Medicine, First People's Hospital of Linping District, Hangzhou, Zhejiang, China
| | - Jun Jiang
- Department of Cardiology, The Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang, China
| | - Sijia Tu
- Department of Cardiovascular Medicine, First People's Hospital of Linping District, Hangzhou, Zhejiang, China
| | - Weizong Zhang
- Department of Cardiovascular Medicine, First People's Hospital of Linping District, Hangzhou, Zhejiang, China
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16
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Imran M, Abida, Alotaibi NM, Thabet HK, Alruwaili JA, Eltaib L, Alshehri A, Kamal M. Investigation of natural compounds as methyltransferase inhibitors against dengue virus: an in silico approach. J Biomol Struct Dyn 2024:1-16. [PMID: 38288926 DOI: 10.1080/07391102.2024.2309647] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 01/18/2024] [Indexed: 02/28/2025]
Abstract
The global challenge posed by Dengue virus (DENV) infection persists, exacerbated by the absence of specific antiviral therapies. The viral methyltransferase (MTase) enzyme, crucial for viral RNA methylation and immune system evasion, has emerged as a promising drug target for combating Dengue fever. In this study, a comprehensive exploration of natural compounds derived from the COCONUT database was conducted, selecting 224 compounds based on their structural similarity to the native substrate of the MTase enzyme, S-adenosyl-L-methionine (SAM). Employing virtual screening techniques, four natural compounds (CNP0307160, CNP0082902, CNP0449158, and CNP0296775) with acceptable docking scores were selected for further re-docking after geometry optimization by the DFT method. Re-docking analyses unveiled significant interactions, including hydrogen bonds and hydrophobic interactions, between these selected ligands and the MTase protein. To gain deeper insights into the dynamic stability of these complexes, we conducted molecular dynamics simulations which showed lower RMSD values for CNP0307160, CNP0082902, and CNP0296775 when compared to the reference molecule. Furthermore, we assessed the structural and dynamic stability of the protein-ligand complexes through free binding energy calculations and Principal Component Analysis (PCA) of the simulation trajectories. In these analyses, the CNP0296775 compound exhibited promising results compared to the other three compounds. The cumulative findings of these investigations underscore the potential of CNP0296775 as a strong inhibitor of DENV MTase, thus offering a promising starting point for its further experimental validation and optimization.
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Affiliation(s)
- Mohd Imran
- Department of Pharmaceutical Chemistry, College of Pharmacy, Northern Border University, Rafha, Saudi Arabia
| | - Abida
- Department of Pharmaceutical Chemistry, College of Pharmacy, Northern Border University, Rafha, Saudi Arabia
| | - Nawaf M Alotaibi
- Department of Clinical Pharmacy, Faculty of Pharmacy, Northern Border University, Rafha, Saudi Arabia
| | - Hamdy Khamees Thabet
- Department of Chemistry, College of Sciences and Arts, Northern Border University, Rafha, Saudi Arabia
| | - Jamal Alhameedi Alruwaili
- College of Applied Medical Sciences, Medical Lab Technology Department, Northern Border University, Arar, Saudi Arabia
| | - Lina Eltaib
- Department of Pharmaceutics, College of Pharmacy, Northern Border University, Rafha, Saudi Arabia
| | - Ahmed Alshehri
- Department of Pharmacology and Toxicology, Faculty of Pharmacy, Northern Border University, Rafha, Saudi Arabia
- Department of Pharmacology, College of Clinical Pharmacy, Imam Abdulrahman Bin Faisal University, Dammam, Saudi Arabia
| | - Mehnaz Kamal
- Department of Pharmaceutical Chemistry, College of Pharmacy, Prince Sattam Bin Abdulaziz University, Saudi Arabia
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17
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Roney M, Dubey A, Issahaku AR, Uddin MN, Tufail A, Wilhelm A, Zamri NB, Aluwi MFFM. Insights from in silico exploration of major curcumin analogs targeting human dipeptidyl peptidase IV. J Biomol Struct Dyn 2024:1-14. [PMID: 38260948 DOI: 10.1080/07391102.2024.2306197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2023] [Accepted: 01/10/2024] [Indexed: 01/24/2024]
Abstract
The goal of this work is to use a variety of in-silico techniques to identify anti-diabetic agents against DPP-IV enzyme from five main curcumin analogues. To produce the successful molecules, five main curcumin analogues were docked into the active site of DPP-IV enzyme. In comparison to the control molecule (Saxagliptin, -6.9 kcal/mol), all the compounds have the highest binding affinity (-7.6 to -7.7 kcal/mol) for the DPP-IV enzyme. These compounds underwent further testing for studies on drug-likeness, pharmacokinetics, and acute toxicity to see the efficacy and safety of compounds. To assess the stability of the docking complex and the binding posture identified during the docking experiment, our study got THC as the lead compound, which was then exposed to 200 ns of molecular dynamic simulation and PCA analysis. Additionally, DFT calculations were conducted to determine the thermodynamic, molecular orbital, and electrostatic potential characteristics of lead compound. Overall, the lead chemical has shown strong drug-like properties, is non-toxic, and has a sizable affinity for the DPP-IV enzyme.
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Affiliation(s)
- Miah Roney
- Faculty of Industrial Sciences and Technology, Universiti Malaysia Pahang Al-Sultan Abdullah, Lebuhraya Tun Razak, Gambang, Kuantan, Pahang Darul Makmur, Malaysia
- Bio Aromatic Research Centre, Universiti Malaysia Pahang Al-Sultan Abdullah, Lebuhraya Tun Razak, Gambang, Kuantan, Pahang Darul Makmur, Malaysia
| | - Amit Dubey
- Department of Pharmacology, Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Sciences, Chennai, Tamil Nadu, India
- Department of Computational Chemistry and Drug Discovery Division, Quanta Calculus, Greater Noida, Uttar Pradesh, India
| | | | - Md Nazim Uddin
- Institute of Food Science and Technology, Bangladesh Council of Scientific and Industrial Research, Dhaka, Bangladesh
| | - Aisha Tufail
- Department of Computational Chemistry and Drug Discovery Division, Quanta Calculus, Greater Noida, Uttar Pradesh, India
| | - Anke Wilhelm
- Department of Chemistry, University of the Free State, Bloemfontein, South Africa
| | - Normaiza Binti Zamri
- Faculty of Industrial Sciences and Technology, Universiti Malaysia Pahang Al-Sultan Abdullah, Lebuhraya Tun Razak, Gambang, Kuantan, Pahang Darul Makmur, Malaysia
| | - Mohd Fadhlizil Fasihi Mohd Aluwi
- Faculty of Industrial Sciences and Technology, Universiti Malaysia Pahang Al-Sultan Abdullah, Lebuhraya Tun Razak, Gambang, Kuantan, Pahang Darul Makmur, Malaysia
- Bio Aromatic Research Centre, Universiti Malaysia Pahang Al-Sultan Abdullah, Lebuhraya Tun Razak, Gambang, Kuantan, Pahang Darul Makmur, Malaysia
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18
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Kumar B, Devi J, Dubey A, Tufail A, Antil N. Biological and computational investigation of transition metal(II) complexes of 2-phenoxyaniline-based ligands. Future Med Chem 2023; 15:1919-1942. [PMID: 37929611 DOI: 10.4155/fmc-2023-0046] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2023] Open
Abstract
Aim: In the 21st century, we are witness of continuous onslaughts of various pathogen deformities which are a major cause of morbidity and mortality worldwide. Therefore, to investigate the grave for these deformities, antioxidant, anti-inflammatory and antimicrobial biological activities were carried out against newly synthesized Schiff base ligands and their transition metal complexes, which are based on newly synthesized 2-phenoxyaniline and salicylaldehyde derivatives. Materials & methods: The synthesized compounds were characterized by various physiochemical studies, demonstrating the octahedral stereochemistry of the complexes. Results: The biological assessments revealed that complex 6 (3.01 ± 0.01 μM) was found to be highly active for oxidant ailments whereas complex 14 (7.14 ± 0.05 μM, 0.0041-0.0082 μmol/ml) was observed as highly potent for inflammation and microbial diseases. Conclusion: Overall, the biological and computational studies demonstrate that the nickel(II) complex 14 can act as an excellent candidate for pathogen deformities.
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Affiliation(s)
- Binesh Kumar
- Department of Chemistry, Guru Jambheshwar University of Science & Technology, Hisar, Haryana, 125001, India
| | - Jai Devi
- Department of Chemistry, Guru Jambheshwar University of Science & Technology, Hisar, Haryana, 125001, India
| | - Amit Dubey
- Department of Pharmacology, Saveetha Dental College & Hospital, Saveetha Institute of Medical & Technical Sciences, Chennai, Tamil Nadu, 600077, India
- Department of Computational Chemistry & Drug Discovery Division, Quanta Calculus, Greater Noida, Uttar Pradesh, 201310, India
| | - Aisha Tufail
- Department of Computational Chemistry & Drug Discovery Division, Quanta Calculus, Greater Noida, Uttar Pradesh, 201310, India
| | - Nidhi Antil
- Department of Chemistry, Maharshi Dayanand University, Rohtak, Haryana, 124001, India
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19
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Chavez-Urias I, López-González LE, Plascencia-Martínez DF, García JJ, Flores-Alamo M, Sugich-Miranda R, Medrano F, Picos-Corrales LA, López-Gastélum KA, Velázquez-Contreras EF, Rocha-Alonzo F. l-Isoleucine-Schiff Base Copper(II) Coordination Polymers: Crystal Structure, Spectroscopic, Hirshfeld Surface, and DFT Analyses. ACS OMEGA 2023; 8:24601-24614. [PMID: 37457461 PMCID: PMC10339395 DOI: 10.1021/acsomega.3c02878] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Accepted: 06/13/2023] [Indexed: 07/18/2023]
Abstract
A new copper(II) coordination polymer was synthesized from the l-isoleucine-Schiff base and characterized by elemental analysis, Fourier transform infrared (FT-IR) spectroscopy, ultraviolet-visible (UV-vis) spectroscopy, single-crystal X-ray diffraction (XRD) analysis, electronic paramagnetic resonance, and thermogravimetric analysis. XRD analysis confirmed the square planar coordination geometry of metallic centers and a zipper-like polymer structure. Vibrational, electronic, and paramagnetic spectroscopies and thermal analysis were consistent with the crystal structure. A Hirshfeld surface (HS) and density functional theory (DFT) analyses were employed to gain additional insight into interactions responsible for complex packing. The quantitative examination of two-dimensional (2D) fingerprint plots revealed, among other van der Waals forces, the dominating participation of H···H and H···Cl interactions in the molecular packing. The use of computational methods provided great help in detailing the supramolecular interactions occurring in the crystal, which were mainly van der Waals attractions. The electronic transition analysis helped corroborate the electronic transitions observed experimentally in the absorption spectrum. The frequency and vibrational mode analysis gave a deeper insight into the characterization of the CuLCL complex.
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Affiliation(s)
- Iván
F. Chavez-Urias
- Departamento
de Investigación en Polímeros y Materiales, Universidad de Sonora, Calle Rosales y Blvd. Luis Encinas s/n, Col. Centro, Hermosillo, Sonora 83000, México
| | - Luis E. López-González
- Centro
de Investigación Científica y de Educación Superior
de Ensenada, Carretera Tijuana-Ensenada 3918, Zona Playitas, Ensenada, Baja California 22860, México
| | - Damian F. Plascencia-Martínez
- Departamento
de Investigación en Polímeros y Materiales, Universidad de Sonora, Calle Rosales y Blvd. Luis Encinas s/n, Col. Centro, Hermosillo, Sonora 83000, México
| | - Juventino J. García
- Facultad
de Química, Universidad Nacional
Autónoma de México, Circuito Exterior Cd. Universitaria, Coyoacán,
Ciudad de México, Ciudad de México 04510, México
| | - Marcos Flores-Alamo
- Facultad
de Química, Universidad Nacional
Autónoma de México, Circuito Exterior Cd. Universitaria, Coyoacán,
Ciudad de México, Ciudad de México 04510, México
| | - Rocío Sugich-Miranda
- Departamento
de Ciencias Químico-Biológicas, Universidad de Sonora, Calle Rosales y Blvd. Luis Encinas s/n, Col. Centro, Hermosillo, Sonora 83000, México
| | - Felipe Medrano
- Departamento
de Ciencias Químico-Biológicas, Universidad de Sonora, Calle Rosales y Blvd. Luis Encinas s/n, Col. Centro, Hermosillo, Sonora 83000, México
| | - Lorenzo A. Picos-Corrales
- Facultad
de Ingeniería Culiacán, Universidad
Autónoma de Sinaloa, Ciudad Universitaria, Culiacán, Sinaloa 80013, México
| | - Karla-Alejandra López-Gastélum
- Departamento
de Ciencias Químico-Biológicas, Universidad de Sonora, Calle Rosales y Blvd. Luis Encinas s/n, Col. Centro, Hermosillo, Sonora 83000, México
- Centro de
Investigación en Alimentación y Desarrollo, Carretera a Ejido La Victoria Km
0.6, Hermosillo, Sonora 83304, México
| | - Enrique F. Velázquez-Contreras
- Departamento
de Investigación en Polímeros y Materiales, Universidad de Sonora, Calle Rosales y Blvd. Luis Encinas s/n, Col. Centro, Hermosillo, Sonora 83000, México
| | - Fernando Rocha-Alonzo
- Departamento
de Ciencias Químico-Biológicas, Universidad de Sonora, Calle Rosales y Blvd. Luis Encinas s/n, Col. Centro, Hermosillo, Sonora 83000, México
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