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For: Tromp JM, Schürch S. Gas-phase dissociation of oligoribonucleotides and their analogs studied by electrospray ionization tandem mass spectrometry. J Am Soc Mass Spectrom 2005;16:1262-8. [PMID: 15978835 DOI: 10.1016/j.jasms.2005.03.024] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2004] [Revised: 03/22/2005] [Accepted: 03/23/2005] [Indexed: 05/03/2023]
Number Cited by Other Article(s)
1
Glenister M, Mistarz U, Cook K, Stephenson J, Dickman M. Optimisation of Heated Electrospray Ionisation Parameters to Minimise In-Source Generated Impurities in the Analysis of Oligonucleotide Therapeutics. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2025;39:e10033. [PMID: 40181565 PMCID: PMC11969060 DOI: 10.1002/rcm.10033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/25/2024] [Revised: 03/07/2025] [Accepted: 03/14/2025] [Indexed: 04/05/2025]
2
Palasser M, Breuker K. FAST MS: Software for the Automated Analysis of Top-Down Mass Spectra of Polymeric Molecules Including RNA, DNA, and Proteins. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2025;36:247-257. [PMID: 39715325 PMCID: PMC11808778 DOI: 10.1021/jasms.4c00236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2024] [Revised: 12/02/2024] [Accepted: 12/10/2024] [Indexed: 12/25/2024]
3
Hannauer F, Black R, Ray AD, Stulz E, Langley GJ, Holman SW. Review of fragmentation of synthetic single-stranded oligonucleotides by tandem mass spectrometry from 2014 to 2022. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2023;37:e9596. [PMID: 37580500 PMCID: PMC10909466 DOI: 10.1002/rcm.9596] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Revised: 06/12/2023] [Accepted: 06/14/2023] [Indexed: 08/16/2023]
4
Sun RX, Zuo MQ, Zhang JS, Dong MQ. Charge-State-Dependent Collision-Induced Dissociation Behaviors of RNA Oligonucleotides via High-Resolution Mass Spectrometry. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2023. [PMID: 37463304 DOI: 10.1021/jasms.3c00073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/20/2023]
5
Kenderdine T, Fabris D. The multifaceted roles of mass spectrometric analysis in nucleic acids drug discovery and development. MASS SPECTROMETRY REVIEWS 2023;42:1332-1357. [PMID: 34939674 PMCID: PMC9218015 DOI: 10.1002/mas.21766] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Revised: 09/23/2021] [Accepted: 11/22/2021] [Indexed: 06/07/2023]
6
Wolff P, Lechner A, Droogmans L, Grosjean H, Westhof E. Identification of Up47 in three thermophilic archaea, one mesophilic archaeon, and one hyperthermophilic bacterium. RNA (NEW YORK, N.Y.) 2023;29:551-556. [PMID: 36759127 PMCID: PMC10159004 DOI: 10.1261/rna.079546.122] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 01/19/2023] [Indexed: 05/06/2023]
7
Greis K, Kirschbaum C, Taccone MI, Götze M, Gewinner S, Schöllkopf W, Meijer G, von Helden G, Pagel K. Studying the Key Intermediate of RNA Autohydrolysis by Cryogenic Gas-Phase Infrared Spectroscopy. Angew Chem Int Ed Engl 2022;61:e202115481. [PMID: 35231141 PMCID: PMC9314874 DOI: 10.1002/anie.202115481] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2021] [Indexed: 11/09/2022]
8
Greis K, Kirschbaum C, Taccone MI, Götze M, Gewinner S, Schöllkopf W, Meijer G, Helden G, Pagel K. Untersuchung des reaktiven Intermediats der RNA Autohydrolyse mittels kryogener Infrarotspektroskopie in der Gasphase. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202115481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
9
Santos IC, Lanzillotti M, Shilov I, Basanta-Sanchez M, Roushan A, Lawler R, Tang W, Bern M, Brodbelt JS. Ultraviolet Photodissociation and Activated Electron Photodetachment Mass Spectrometry for Top-Down Sequencing of Modified Oligoribonucleotides. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2022;33:510-520. [PMID: 35157441 DOI: 10.1021/jasms.1c00340] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
10
Pourshahian S. THERAPEUTIC OLIGONUCLEOTIDES, IMPURITIES, DEGRADANTS, AND THEIR CHARACTERIZATION BY MASS SPECTROMETRY. MASS SPECTROMETRY REVIEWS 2021;40:75-109. [PMID: 31840864 DOI: 10.1002/mas.21615] [Citation(s) in RCA: 48] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
11
Kimura S, Obika S. Effect of oligonucleotide structural difference on matrix-assisted laser desorption/ionization in-source decay in comparison with collision-induced dissociation fragmentation. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2020;34:e8819. [PMID: 32346915 DOI: 10.1002/rcm.8819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2020] [Revised: 04/26/2020] [Accepted: 04/26/2020] [Indexed: 06/11/2023]
12
Gamba E, Sosic A, Saccone I, Magli E, Frecentese F, Gatto B. Multiple in Vitro Inhibition of HIV-1 Proteins by 2,6-Dipeptidyl-anthraquinone Conjugates Targeting the PBS RNA. ACS Med Chem Lett 2020;11:949-955. [PMID: 32435410 DOI: 10.1021/acsmedchemlett.9b00682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Accepted: 03/23/2020] [Indexed: 11/28/2022]  Open
13
Martin Somer A, Macaluso V, Barnes GL, Yang L, Pratihar S, Song K, Hase WL, Spezia R. Role of Chemical Dynamics Simulations in Mass Spectrometry Studies of Collision-Induced Dissociation and Collisions of Biological Ions with Organic Surfaces. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2020;31:2-24. [PMID: 32881516 DOI: 10.1021/jasms.9b00062] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
14
Fuchs E, Falschlunger C, Micura R, Breuker K. The effect of adenine protonation on RNA phosphodiester backbone bond cleavage elucidated by deaza-nucleobase modifications and mass spectrometry. Nucleic Acids Res 2019;47:7223-7234. [PMID: 31276590 PMCID: PMC6698743 DOI: 10.1093/nar/gkz574] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Revised: 06/15/2019] [Accepted: 06/21/2019] [Indexed: 12/14/2022]  Open
15
Glasner H, Riml C, Micura R, Breuker K. Label-free, direct localization and relative quantitation of the RNA nucleobase methylations m6A, m5C, m3U, and m5U by top-down mass spectrometry. Nucleic Acids Res 2017;45:8014-8025. [PMID: 28549193 PMCID: PMC5570050 DOI: 10.1093/nar/gkx470] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2017] [Accepted: 05/23/2017] [Indexed: 01/28/2023]  Open
16
Schürch S. Characterization of nucleic acids by tandem mass spectrometry - The second decade (2004-2013): From DNA to RNA and modified sequences. MASS SPECTROMETRY REVIEWS 2016;35:483-523. [PMID: 25288464 DOI: 10.1002/mas.21442] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2013] [Revised: 05/04/2014] [Accepted: 05/04/2014] [Indexed: 06/03/2023]
17
Hari Y, Dugovič B, Istrate A, Fignolé A, Leumann CJ, Schürch S. The Contribution of the Activation Entropy to the Gas-Phase Stability of Modified Nucleic Acid Duplexes. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2016;27:1186-1196. [PMID: 27080005 DOI: 10.1007/s13361-016-1391-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2016] [Revised: 03/17/2016] [Accepted: 03/18/2016] [Indexed: 06/05/2023]
18
Gaston KW, Limbach PA. The identification and characterization of non-coding and coding RNAs and their modified nucleosides by mass spectrometry. RNA Biol 2015;11:1568-85. [PMID: 25616408 PMCID: PMC4615682 DOI: 10.4161/15476286.2014.992280] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]  Open
19
Riml C, Glasner H, Rodgers MT, Micura R, Breuker K. On the mechanism of RNA phosphodiester backbone cleavage in the absence of solvent. Nucleic Acids Res 2015;43:5171-81. [PMID: 25904631 PMCID: PMC4446422 DOI: 10.1093/nar/gkv288] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2014] [Revised: 03/14/2015] [Accepted: 03/24/2015] [Indexed: 12/18/2022]  Open
20
Sample PJ, Gaston KW, Alfonzo JD, Limbach PA. RoboOligo: software for mass spectrometry data to support manual and de novo sequencing of post-transcriptionally modified ribonucleic acids. Nucleic Acids Res 2015;43:e64. [PMID: 25820423 PMCID: PMC4446411 DOI: 10.1093/nar/gkv145] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2014] [Revised: 02/10/2015] [Accepted: 02/15/2015] [Indexed: 11/14/2022]  Open
21
LC-MS of oligonucleotides: applications in biomedical research. Bioanalysis 2015;6:1525-42. [PMID: 25046052 DOI: 10.4155/bio.14.94] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
22
Li S, Limbach PA. Identification of RNA sequence isomer by isotope labeling and LC-MS/MS. JOURNAL OF MASS SPECTROMETRY : JMS 2014;49:1191-1198. [PMID: 25395135 DOI: 10.1002/jms.3449] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2014] [Revised: 07/22/2014] [Accepted: 07/23/2014] [Indexed: 06/04/2023]
23
Mauger F, Tabet JC, Gut IG. A revisit of high collision energy effects on collision-induced dissociation spectra using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry (MALDI-LIFT-TOF/TOF): application to the sequencing of RNA/DNA chimeras. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2014;28:1433-1443. [PMID: 24861592 DOI: 10.1002/rcm.6913] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2013] [Revised: 04/01/2014] [Accepted: 04/01/2014] [Indexed: 06/03/2023]
24
Nyakas A, Eberle RP, Stucki SR, Schürch S. More than charged base loss--revisiting the fragmentation of highly charged oligonucleotides. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2014;25:1155-1166. [PMID: 24802162 DOI: 10.1007/s13361-014-0873-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2013] [Revised: 01/30/2014] [Accepted: 02/28/2014] [Indexed: 06/03/2023]
25
Fragmentation Reactions of Nucleic Acid Ions in the Gas Phase. PHYSICAL CHEMISTRY IN ACTION 2014. [DOI: 10.1007/978-3-642-54842-0_6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
26
Stucki SR, Désiron C, Nyakas A, Marti S, Leumann CJ, Schürch S. Gas-phase dissociation of homo-DNA oligonucleotides. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2013;24:1997-2006. [PMID: 24043521 DOI: 10.1007/s13361-013-0729-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2013] [Revised: 08/02/2013] [Accepted: 08/07/2013] [Indexed: 06/02/2023]
27
Quinn R, Basanta-Sanchez M, Rose RE, Fabris D. Direct infusion analysis of nucleotide mixtures of very similar or identical elemental composition. JOURNAL OF MASS SPECTROMETRY : JMS 2013;48:703-12. [PMID: 23722961 PMCID: PMC3767442 DOI: 10.1002/jms.3207] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2013] [Revised: 03/18/2013] [Accepted: 03/21/2013] [Indexed: 05/14/2023]
28
Gao Y, Yang J, Cancilla MT, Meng F, McLuckey SA. Top-down interrogation of chemically modified oligonucleotides by negative electron transfer and collision induced dissociation. Anal Chem 2013;85:4713-20. [PMID: 23534847 DOI: 10.1021/ac400448t] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
29
Nyakas A, Blum LC, Stucki SR, Reymond JL, Schürch S. OMA and OPA--software-supported mass spectra analysis of native and modified nucleic acids. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2013;24:249-256. [PMID: 23264149 DOI: 10.1007/s13361-012-0529-1] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2012] [Revised: 10/26/2012] [Accepted: 10/30/2012] [Indexed: 06/01/2023]
30
Gao Y, McLuckey SA. Electron transfer followed by collision-induced dissociation (NET-CID) for generating sequence information from backbone-modified oligonucleotide anions. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2013;27:249-257. [PMID: 23239339 DOI: 10.1002/rcm.6428] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2012] [Revised: 09/28/2012] [Accepted: 09/29/2012] [Indexed: 06/01/2023]
31
Taucher M, Breuker K. Characterization of modified RNA by top-down mass spectrometry. Angew Chem Int Ed Engl 2012;51:11289-92. [PMID: 23042528 PMCID: PMC3532624 DOI: 10.1002/anie.201206232] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2012] [Indexed: 11/11/2022]
32
Taucher M, Breuker K. Characterization of Modified RNA by Top-Down Mass Spectrometry. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201206232] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
33
Hagan NA, Smith CA, Antoine MD, Lin JS, Feldman AB, Demirev PA. Enhanced in-source fragmentation in MALDI-TOF-MS of oligonucleotides using 1,5-diaminonapthalene. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2012;23:773-777. [PMID: 22311728 DOI: 10.1007/s13361-011-0333-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2011] [Revised: 12/28/2011] [Accepted: 12/30/2011] [Indexed: 05/31/2023]
34
Gao Y, McLuckey SA. Collision-induced dissociation of oligonucleotide anions fully modified at the 2'-position of the ribose: 2'-F/-H and 2'-F/-H/-OMe mix-mers. JOURNAL OF MASS SPECTROMETRY : JMS 2012;47:364-369. [PMID: 22431464 DOI: 10.1002/jms.2044] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
35
Krivos KL, Addepalli B, Limbach PA. Removal of 3'-phosphate group by bacterial alkaline phosphatase improves oligonucleotide sequence coverage of RNase digestion products analyzed by collision-induced dissociation mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2011;25:3609-3616. [PMID: 22095510 DOI: 10.1002/rcm.5266] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
36
Nakayama H, Takahashi N, Isobe T. Informatics for mass spectrometry-based RNA analysis. MASS SPECTROMETRY REVIEWS 2011;30:1000-1012. [PMID: 21328601 DOI: 10.1002/mas.20325] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2010] [Revised: 07/01/2010] [Accepted: 07/01/2010] [Indexed: 05/30/2023]
37
Beverly MB. Applications of mass spectrometry to the study of siRNA. MASS SPECTROMETRY REVIEWS 2011;30:979-998. [PMID: 20201110 DOI: 10.1002/mas.20260] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2008] [Revised: 08/13/2009] [Accepted: 08/13/2009] [Indexed: 05/28/2023]
38
Taucher M, Ganisl B, Breuker K. Identification, localization, and relative quantitation of pseudouridine in RNA by tandem mass spectrometry of hydrolysis products. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY 2011;304:91-97. [PMID: 21960742 PMCID: PMC3180913 DOI: 10.1016/j.ijms.2010.05.024] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
39
Waghmare SP, Dickman MJ. Characterization and quantification of RNA post-transcriptional modifications using stable isotope labeling of RNA in conjunction with mass spectrometry analysis. Anal Chem 2011;83:4894-901. [PMID: 21539333 DOI: 10.1021/ac200547y] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
40
Nyakas A, Stucki SR, Schürch S. Tandem mass spectrometry of modified and platinated oligoribonucleotides. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2011;22:875-887. [PMID: 21472522 DOI: 10.1007/s13361-011-0106-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2010] [Revised: 02/04/2011] [Accepted: 02/09/2011] [Indexed: 05/30/2023]
41
Smith M. Characterisation of a modified oligonucleotide together with its synthetic impurities using accurate mass measurements. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2011;25:511-525. [PMID: 21259360 DOI: 10.1002/rcm.4886] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
42
Smith SI, Brodbelt JS. Hybrid activation methods for elucidating nucleic acid modifications. Anal Chem 2011;83:303-10. [PMID: 21141922 PMCID: PMC3012149 DOI: 10.1021/ac102411a] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
43
Ivleva VB, Yu YQ, Gilar M. Ultra-performance liquid chromatography/tandem mass spectrometry (UPLC/MS/MS) and UPLC/MS(E) analysis of RNA oligonucleotides. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2010;24:2631-2640. [PMID: 20740540 DOI: 10.1002/rcm.4683] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
44
Taoka M, Ikumi M, Nakayama H, Masaki S, Matsuda R, Nobe Y, Yamauchi Y, Takeda J, Takahashi N, Isobe T. In-Gel Digestion for Mass Spectrometric Characterization of RNA from Fluorescently Stained Polyacrylamide Gels. Anal Chem 2010;82:7795-803. [DOI: 10.1021/ac101623j] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Krivos KL, Limbach PA. Sequence analysis of peptide:oligonucleotide heteroconjugates by electron capture dissociation and electron transfer dissociation. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2010;21:1387-1397. [PMID: 20435485 PMCID: PMC3638748 DOI: 10.1016/j.jasms.2010.03.043] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2010] [Revised: 03/30/2010] [Accepted: 03/30/2010] [Indexed: 05/29/2023]
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Huang TY, Liu J, McLuckey SA. Top-down tandem mass spectrometry of tRNA via ion trap collision-induced dissociation. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2010;21:890-898. [PMID: 20080046 DOI: 10.1016/j.jasms.2009.12.007] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2009] [Revised: 12/15/2009] [Accepted: 12/16/2009] [Indexed: 05/28/2023]
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Gardner MW, Li N, Ellington AD, Brodbelt JS. Infrared multiphoton dissociation of small-interfering RNA anions and cations. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2010;21:580-91. [PMID: 20129797 PMCID: PMC2847665 DOI: 10.1016/j.jasms.2009.12.011] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2009] [Revised: 12/21/2009] [Accepted: 12/22/2009] [Indexed: 05/13/2023]
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Taucher M, Rieder U, Breuker K. Minimizing base loss and internal fragmentation in collisionally activated dissociation of multiply deprotonated RNA. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2010;21:278-85. [PMID: 19932627 DOI: 10.1016/j.jasms.2009.10.010] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2009] [Revised: 09/28/2009] [Accepted: 10/14/2009] [Indexed: 05/25/2023]
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Taoka M, Yamauchi Y, Nobe Y, Masaki S, Nakayama H, Ishikawa H, Takahashi N, Isobe T. An analytical platform for mass spectrometry-based identification and chemical analysis of RNA in ribonucleoprotein complexes. Nucleic Acids Res 2010;37:e140. [PMID: 19740761 PMCID: PMC2790879 DOI: 10.1093/nar/gkp732] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
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Huang TY, McLuckey SA. Gas-phase chemistry of multiply charged bioions in analytical mass spectrometry. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2010;3:365-85. [PMID: 20636047 PMCID: PMC3017717 DOI: 10.1146/annurev.anchem.111808.073725] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
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