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Fung T, Pande J, Shnerb NM, O'Dwyer JP, Chisholm RA. Processes governing species richness in communities exposed to temporal environmental stochasticity: A review and synthesis of modelling approaches. Math Biosci 2024; 369:109131. [PMID: 38113973 DOI: 10.1016/j.mbs.2023.109131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 11/10/2023] [Accepted: 12/15/2023] [Indexed: 12/21/2023]
Abstract
Research into the processes governing species richness has often assumed that the environment is fixed, whereas realistic environments are often characterised by random fluctuations over time. This temporal environmental stochasticity (TES) changes the demographic rates of species populations, with cascading effects on community dynamics and species richness. Theoretical and applied studies have used process-based mathematical models to determine how TES affects species richness, but under a variety of frameworks. Here, we critically review such studies to synthesise their findings and draw general conclusions. We first provide a broad mathematical framework encompassing the different ways in which TES has been modelled. We then review studies that have analysed models with TES under the assumption of negligible interspecific interactions, such that a community is conceptualised as the sum of independent species populations. These analyses have highlighted how TES can reduce species richness by increasing the frequency at which a species becomes rare and therefore prone to extinction. Next, we review studies that have relaxed the assumption of negligible interspecific interactions. To simplify the corresponding models and make them analytically tractable, such studies have used mean-field theory to derive fixed parameters representing the typical strength of interspecific interactions under TES. The resulting analyses have highlighted community-level effects that determine how TES affects species richness, for species that compete for a common limiting resource. With short temporal correlations of environmental conditions, a non-linear averaging effect of interspecific competition strength over time gives an increase in species richness. In contrast, with long temporal correlations of environmental conditions, strong selection favouring the fittest species between changes in environmental conditions results in a decrease in species richness. We compare such results with those from invasion analysis, which examines invasion growth rates (IGRs) instead of species richness directly. Qualitative differences sometimes arise because the IGR is the expected growth rate of a species when it is rare, which does not capture the variation around this mean or the probability of the species becoming rare. Our review elucidates key processes that have been found to mediate the negative and positive effects of TES on species richness, and by doing so highlights key areas for future research.
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Affiliation(s)
- Tak Fung
- Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, Singapore 117558, Singapore.
| | - Jayant Pande
- Department of Physical and Natural Sciences, FLAME University, Pune, Maharashtra 412115, India
| | - Nadav M Shnerb
- Department of Physics, Bar-Ilan University, Ramat Gan 52900, Israel
| | - James P O'Dwyer
- Department of Plant Biology, School of Integrative Biology, University of Illinois, 505, South Goodwin Avenue, Urbana, IL 61801, United States
| | - Ryan A Chisholm
- Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, Singapore 117558, Singapore
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2
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Zhou X, Xue B. Effect of compositional fluctuation on the survival of bet-hedging species. J Theor Biol 2022; 553:111270. [PMID: 36075454 DOI: 10.1016/j.jtbi.2022.111270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 08/24/2022] [Accepted: 08/30/2022] [Indexed: 11/20/2022]
Abstract
Understanding the coexistence of diverse species in a changing environment is an important problem in community ecology. Bet-hedging is a strategy that helps species survive in such changing environments. However, studies of bet-hedging have often focused on the expected long-term growth rate of the species by itself, neglecting competition with other coexisting species. Here we study the extinction risk of a bet-hedging species in competition with others. We show that there are three contributions to the extinction risk. The first is the usual demographic fluctuation due to stochastic reproduction and selection processes in finite populations. The second, due to the fluctuation of population growth rate caused by environmental changes, may actually reduce the extinction risk for small populations. Besides those two, we reveal a third contribution, which is unique to bet-hedging species that diversify into multiple phenotypes: The phenotype composition of the population will fluctuate over time, resulting in increased extinction risk. We compare such compositional fluctuation to the demographic and environmental contributions, showing how they have different effects on the extinction risk depending on the population size, generation overlap, and environmental correlation.
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Affiliation(s)
- Xiao Zhou
- Department of Physics, University of Florida, 2001 Museum Road, Gainesville, 32611, FL, United States.
| | - BingKan Xue
- Department of Physics, University of Florida, 2001 Museum Road, Gainesville, 32611, FL, United States.
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3
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Fixation in the stochastic Lotka-Volterra model with small fitness trade-offs. J Math Biol 2022; 85:8. [PMID: 35819503 DOI: 10.1007/s00285-022-01774-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Revised: 12/01/2021] [Accepted: 04/05/2022] [Indexed: 10/17/2022]
Abstract
We study the probability of fixation in a stochastic two-species competition model. By identifying a naturally occurring fast timescale, we derive an approximation to the associated backward Kolmogorov equation that allows us to obtain an explicit closed form solution for the probability of fixation of either species. We use our result to study fitness tradeoff strategies and show that, despite some tradeoffs having nearly negligible effects on the corresponding deterministic dynamics, they can have large implications for the outcome of the stochastic system.
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4
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Meyer I, Steinmetz B, Shnerb NM. How the storage effect and the number of temporal niches affect biodiversity in stochastic and seasonal environments. PLoS Comput Biol 2022; 18:e1009971. [PMID: 35344537 PMCID: PMC8989364 DOI: 10.1371/journal.pcbi.1009971] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Revised: 04/07/2022] [Accepted: 02/25/2022] [Indexed: 12/04/2022] Open
Abstract
Temporal environmental variations affect diversity in communities of competing populations. In particular, the covariance between competition and environment is known to facilitate invasions of rare species via the storage effect. Here we present a quantitative study of the effects of temporal variations in two-species and in diverse communities. Four scenarios are compared: environmental variations may be either periodic (seasonal) or stochastic, and the dynamics may support the storage effect (global competition) or not (local competition). In two-species communities, coexistence is quantified via the mean time to absorption, and we show that stochastic variations yield shorter persistence time because they allow for rare sequences of bad years. In diverse communities, where the steady-state reflects a colonization-extinction equilibrium, the actual number of temporal niches is shown to play a crucial role. When this number is large, the same trends hold: storage effect and periodic variations increase both species richness and the evenness of the community. Surprisingly, when the number of temporal niches is small global competition acts to decrease species richness and evenness, as it focuses the competition to specific periods, thus increasing the effective fitness differences. One of the major challenges of community ecology and population genetics is the understanding of the factors that protect biodiversity. Surprisingly, in many generic cases temporal environmental variations (and the abundance fluctuations associated with it) promote the coexistence of competing species and facilitate genetic polymorphism. Here we present a detailed and quantitative comparison between the stabilizing (and the destabilizing) effects of periodic (seasonal) and stochastic temporal variations. When the number of species is small, we show that persistence times under periodic variations are much longer than the persistence times in a stochastic environment. However, environmental variations facilitate coexistence only when the number of temporal niches is larger than the number of species, whereas in the opposite case the same mechanism acts to increase competition and to decrease species richness. Since it is reasonable to expect the number of temporal niches under seasonal variations to be typically smaller than the corresponding number in stochastic environments, stochastic variations provide a more plausible explanation for the apparent stability of high-diversity assemblages.
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Affiliation(s)
- Immanuel Meyer
- Department of Physics, Bar-Ilan University, Ramat-Gan, Israel
| | - Bnaya Steinmetz
- Department of Physics, Bar-Ilan University, Ramat-Gan, Israel
| | - Nadav M. Shnerb
- Department of Physics, Bar-Ilan University, Ramat-Gan, Israel
- * E-mail:
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5
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Pande J, Shnerb NM. How temporal environmental stochasticity affects species richness: destabilization, neutralization and the storage effect. J Theor Biol 2022; 539:111053. [DOI: 10.1016/j.jtbi.2022.111053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Revised: 01/16/2022] [Accepted: 02/02/2022] [Indexed: 10/19/2022]
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Fung T, O'Dwyer JP, Chisholm RA. Effects of temporal environmental stochasticity on species richness: a mechanistic unification spanning weak to strong temporal correlations. OIKOS 2021. [DOI: 10.1111/oik.08667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Tak Fung
- National Univ. of Singapore, Dept of Biological Sciences Singapore Singapore
| | - James P. O'Dwyer
- Dept of Plant Biology, School of Integrative Biology, Univ. of Illinois Urbana IL USA
| | - Ryan A. Chisholm
- National Univ. of Singapore, Dept of Biological Sciences Singapore Singapore
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7
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DeMalach N, Shnerb N, Fukami T. Alternative States in Plant Communities Driven by a Life-History Trade-Off and Demographic Stochasticity. Am Nat 2021; 198:E27-E36. [PMID: 34260874 DOI: 10.1086/714418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
AbstractLife-history trade-offs among species are major drivers of community assembly. Most studies investigate how trade-offs promote deterministic coexistence of species. It remains unclear how trade-offs may instead promote historically contingent exclusion of species, where species dominance is affected by initial abundances, causing alternative community states via priority effects. Focusing on the establishment-longevity trade-off, in which high longevity is associated with low competitive ability during establishment, we study the transient dynamics and equilibrium outcomes of competitive interactions in a simulation model of plant community assembly. We show that in this model, the establishment-longevity trade-off is a necessary but not sufficient condition for alternative stable equilibria, which also require low fecundity for both species. An analytical approximation of our simulation model demonstrates that alternative stable equilibria are driven by demographic stochasticity in the number of seeds arriving at each establishment site. This site-scale stochasticity is affected only by fecundity and therefore occurs even in infinitely large communities. In many cases where the establishment-longevity trade-off does not cause alternative stable equilibria, the trade-off still decreases the rate of convergence toward the single equilibrium, resulting in decades of transient dynamics that can appear indistinguishable from alternative stable equilibria in empirical studies.
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Berríos-Caro E, Galla T, Constable GWA. Switching environments, synchronous sex, and the evolution of mating types. Theor Popul Biol 2021; 138:28-42. [PMID: 33639174 DOI: 10.1016/j.tpb.2021.02.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 02/11/2021] [Accepted: 02/12/2021] [Indexed: 01/31/2023]
Abstract
While facultative sex is common in sexually reproducing species, for reasons of tractability most mathematical models assume that such sex is asynchronous in the population. In this paper, we develop a model of switching environments to instead capture the effect of an entire population transitioning synchronously between sexual and asexual modes of reproduction. We use this model to investigate the evolution of the number of self-incompatible mating types in finite populations, which empirically can range from two to thousands. When environmental switching is fast, we recover the results of earlier studies that implicitly assumed populations were engaged in asynchronous sexual reproduction. However when the environment switches slowly, we see deviations from previous asynchronous theory, including a lower number of mating types at equilibrium and bimodality in the stationary distribution of mating types. We provide analytic approximations for both the fast and slow switching regimes, as well as a numerical scheme based on the Kolmogorov equations for the system to quickly evaluate the model dynamics at intermediate parameters. Our approach exploits properties of integer partitions in number theory. We also demonstrate how additional biological processes such as selective sweeps can be accounted for in this switching environment framework, showing that beneficial mutations can further erode mating type diversity in synchronous facultatively sexual populations.
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Affiliation(s)
- Ernesto Berríos-Caro
- Theoretical Physics, Department of Physics and Astronomy, School of Natural Sciences, Faculty of Science and Engineering, The University of Manchester, Manchester M13 9PL, United Kingdom.
| | - Tobias Galla
- Instituto de Física Interdisciplinar y Sistemas Complejos IFISC (CSIC-UIB), 07122 Palma de Mallorca, Spain; Theoretical Physics, Department of Physics and Astronomy, School of Natural Sciences, Faculty of Science and Engineering, The University of Manchester, Manchester M13 9PL, United Kingdom
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9
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Pande J, Shnerb NM. Taming the diffusion approximation through a controlling-factor WKB method. Phys Rev E 2020; 102:062410. [PMID: 33466058 DOI: 10.1103/physreve.102.062410] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 11/17/2020] [Indexed: 11/07/2022]
Abstract
The diffusion approximation (DA) is widely used in the analysis of stochastic population dynamics, from population genetics to ecology and evolution. The DA is an uncontrolled approximation that assumes the smoothness of the calculated quantity over the relevant state space and fails when this property is not satisfied. This failure becomes severe in situations where the direction of selection switches sign. Here we employ the WKB (Wentzel-Kramers-Brillouin) large-deviations method, which requires only the logarithm of a given quantity to be smooth over its state space. Combining the WKB scheme with asymptotic matching techniques, we show how to derive the diffusion approximation in a controlled manner and how to produce better approximations, applicable for much wider regimes of parameters. We also introduce a scalable (independent of population size) WKB-based numerical technique. The method is applied to a central problem in population genetics and evolution, finding the chance of ultimate fixation in a zero-sum, two-types competition.
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Affiliation(s)
- Jayant Pande
- Department of Physics, Bar-Ilan University, Ramat-Gan IL52900, Israel
| | - Nadav M Shnerb
- Department of Physics, Bar-Ilan University, Ramat-Gan IL52900, Israel
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10
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Steinmetz B, Kalyuzhny M, Shnerb NM. Intraspecific variability in fluctuating environments: mechanisms of impact on species diversity. Ecology 2020; 101:e03174. [PMID: 32860217 DOI: 10.1002/ecy.3174] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 05/19/2020] [Accepted: 06/18/2020] [Indexed: 11/07/2022]
Abstract
Recent studies have found considerable trait variations within species. The effect of such intraspecific trait variability (ITV) on the stability, coexistence, and diversity of ecological communities received considerable attention and in many models it was shown to impede coexistence and decrease species diversity. Here we present a numerical study of the effect of genetically inherited ITV on species persistence and diversity in a temporally fluctuating environment. Two mechanisms are identified. First, ITV buffers populations against varying environmental conditions (portfolio effect) and reduces variation in abundances. Second, the interplay between ITV and environmental variations tends to increase the mean fitness of diverse populations. The first mechanism promotes persistence and tends to increase species richness, while the second reduces the chance of a rare species population (which is usually homogeneous) to invade, thus decreasing species richness. We show that for large communities the portfolio effect is dominant, leading to ITV promoting species persistence and richness.
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Affiliation(s)
- Bnaya Steinmetz
- Department of Physics, Bar-Ilan University, Ramat Gan, 52900, Israel
| | - Michael Kalyuzhny
- Department of Ecology, Evolution, and Behavior, Institute of Life Sciences, Hebrew University of Jerusalem, Givat-Ram, Jerusalem, 91904, Israel
| | - Nadav M Shnerb
- Department of Physics, Bar-Ilan University, Ramat Gan, 52900, Israel
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11
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Gackou G, Guillin A, Personne A. Quantitative approximation of the discrete Moran process by a Wright-Fisher diffusion. J Math Biol 2020; 81:575-602. [PMID: 32705306 DOI: 10.1007/s00285-020-01520-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 06/09/2020] [Indexed: 11/26/2022]
Abstract
The Moran discrete process and the Wright-Fisher model are the most popular models in population genetics. The Wright-Fisher diffusion is commonly used as an approximation in order to understand the dynamics of population genetics models. Here, we give a quantitative large-population limit of the error occurring by using the approximating diffusion in the presence of weak selection and weak immigration in one dimension. The approach is robust enough to consider the case where selection and immigration are Markovian processes, whose large-population limit is either a finite state jump process, or a diffusion process.
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Affiliation(s)
- Gorgui Gackou
- Laboratoire de Mathématiques Blaise Pascal, CNRS UMR 6620, Université Clermont-Auvergne, Avenue des Landais, 63177, Aubière, France
| | - Arnaud Guillin
- Laboratoire de Mathématiques Blaise Pascal, CNRS UMR 6620, Université Clermont-Auvergne, Avenue des Landais, 63177, Aubière, France
| | - Arnaud Personne
- Laboratoire de Mathématiques Blaise Pascal, CNRS UMR 6620, Université Clermont-Auvergne, Avenue des Landais, 63177, Aubière, France.
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12
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Guillin A, Jabot F, Personne A. On the Simpson index for the Wright–Fisher process with random selection and immigration. INT J BIOMATH 2020. [DOI: 10.1142/s1793524520500461] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Moran or Wright–Fisher processes are probably the most well known models to study the evolution of a population under environmental various effects. Our object of study will be the Simpson index which measures the level of diversity of the population, one of the key parameters for ecologists who study for example, forest dynamics. Following ecological motivations, we will consider, here, the case, where there are various species with fitness and immigration parameters being random processes (and thus time evolving). The Simpson index is difficult to evaluate when the population is large, except in the neutral (no selection) case, because it has no closed formula. Our approach relies on the large population limit in the “weak” selection case, and thus to give a procedure which enables us to approximate, with controlled rate, the expectation of the Simpson index at fixed time. We will also study the long time behavior (invariant measure and convergence speed towards equilibrium) of the Wright–Fisher process in a simplified setting, allowing us to get a full picture for the approximation of the expectation of the Simpson index.
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Affiliation(s)
- Arnaud Guillin
- Laboratoire de Mathématiques Blaise Pascal, CNRS UMR 6620, Université Clermont-Auvergne, avenue des Landais, F-63177 Aubière, France
| | - Franck Jabot
- Laboratoire d’Ingéniérie pour les Systèmes Complexes, IRSTEA, Campus des Cézeaux 9, avenue Blaise Pascal - CS 20085 63178 Aubière, France
| | - Arnaud Personne
- Laboratoire de Mathématiques Blaise Pascal, CNRS UMR 6620, Université Clermont-Auvergne, avenue des Landais, F-63177 Aubière, France
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13
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Dean AM, Shnerb NM. Stochasticity‐induced stabilization in ecology and evolution: a new synthesis. Ecology 2020; 101:e03098. [DOI: 10.1002/ecy.3098] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/08/2019] [Revised: 01/16/2020] [Accepted: 02/24/2020] [Indexed: 11/12/2022]
Affiliation(s)
- Antony M. Dean
- Department of Ecology, Evolution, and Behavior University of Minnesota St. Paul Minnesota55108USA
- BioTechnology Institute University of Minnesota St. Paul Minnesota55108USA
| | - Nadav M. Shnerb
- Department of Physics Bar‐Ilan University Ramat Gan52900Israel
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14
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Stabilization of extensive fine-scale diversity by ecologically driven spatiotemporal chaos. Proc Natl Acad Sci U S A 2020; 117:14572-14583. [PMID: 32518107 DOI: 10.1073/pnas.1915313117] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
It has recently become apparent that the diversity of microbial life extends far below the species level to the finest scales of genetic differences. Remarkably, extensive fine-scale diversity can coexist spatially. How is this diversity stable on long timescales, despite selective or ecological differences and other evolutionary processes? Most work has focused on stable coexistence or assumed ecological neutrality. We present an alternative: extensive diversity maintained by ecologically driven spatiotemporal chaos, with no assumptions about niches or other specialist differences between strains. We study generalized Lotka-Volterra models with antisymmetric correlations in the interactions inspired by multiple pathogen strains infecting multiple host strains. Generally, these exhibit chaos with increasingly wild population fluctuations driving extinctions. But the simplest spatial structure, many identical islands with migration between them, stabilizes a diverse chaotic state. Some strains (subspecies) go globally extinct, but many persist for times exponentially long in the number of islands. All persistent strains have episodic local blooms to high abundance, crucial for their persistence as, for many, their average population growth rate is negative. Snapshots of the abundance distribution show a power law at intermediate abundances that is essentially indistinguishable from the neutral theory of ecology. But the dynamics of the large populations are much faster than birth-death fluctuations. We argue that this spatiotemporally chaotic "phase" should exist in a wide range of models, and that even in rapidly mixed systems, longer-lived spores could similarly stabilize a diverse chaotic phase.
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15
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Murray R, Young G. Neutral competition in a deterministically changing environment: Revisiting continuum approaches. J Theor Biol 2020; 486:110104. [PMID: 31809716 DOI: 10.1016/j.jtbi.2019.110104] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Revised: 11/27/2019] [Accepted: 12/02/2019] [Indexed: 11/17/2022]
Abstract
Environmental variation can play an important role in ecological competition by influencing the relative advantage between competing species. Here, we consider such effects by extending a classical, competitive Moran model to incorporate an environment that fluctuates periodically in time. We adapt methods from work on these classical models to investigate the effects of the magnitude and frequency of environmental fluctuations on two important population statistics: the probability of fixation and the mean time to fixation. In particular, we find that for small frequencies, the system behaves similar to a system with a constant fitness difference between the two species, and for large frequencies, the system behaves similar to a neutrally competitive model. Most interestingly, the system exhibits nontrivial behavior for intermediate frequencies. We conclude by showing that our results agree quite well with recent theoretical work on competitive models with a stochastically changing environment, and discuss how the methods we develop ease the mathematical analysis required to study such models.
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Affiliation(s)
- Ryan Murray
- Department of Mathematics, North Carolina State University, Raleigh, NC 27695, United States
| | - Glenn Young
- Department of Mathematics, Kennesaw State University, Marietta, GA 30060, United States.
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16
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Pande J, Fung T, Chisholm R, Shnerb NM. Mean growth rate when rare is not a reliable metric for persistence of species. Ecol Lett 2019; 23:274-282. [DOI: 10.1111/ele.13430] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Revised: 10/03/2019] [Accepted: 10/28/2019] [Indexed: 01/23/2023]
Affiliation(s)
- Jayant Pande
- Department of Physics Bar‐Ilan University Ramat Gan 52900 Israel
| | - Tak Fung
- Department of Biological Sciences National University of Singapore Singapore 117543 Republic of Singapore
| | - Ryan Chisholm
- Department of Biological Sciences National University of Singapore Singapore 117543 Republic of Singapore
| | - Nadav M. Shnerb
- Department of Physics Bar‐Ilan University Ramat Gan 52900 Israel
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17
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Fung T, Chisholm RA, Anderson-Teixeira K, Bourg N, Brockelman WY, Bunyavejchewin S, Chang-Yang CH, Chitra-Tarak R, Chuyong G, Condit R, Dattaraja HS, Davies SJ, Ewango CEN, Fewless G, Fletcher C, Gunatilleke CVS, Gunatilleke IAUN, Hao Z, Hogan JA, Howe R, Hsieh CF, Kenfack D, Lin Y, Ma K, Makana JR, McMahon S, McShea WJ, Mi X, Nathalang A, Ong PS, Parker G, Rau EP, Shue J, Su SH, Sukumar R, Sun IF, Suresh HS, Tan S, Thomas D, Thompson J, Valencia R, Vallejo MI, Wang X, Wang Y, Wijekoon P, Wolf A, Yap S, Zimmerman J. Temporal population variability in local forest communities has mixed effects on tree species richness across a latitudinal gradient. Ecol Lett 2019; 23:160-171. [PMID: 31698546 DOI: 10.1111/ele.13412] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Revised: 07/04/2019] [Accepted: 09/29/2019] [Indexed: 11/28/2022]
Abstract
Among the local processes that determine species diversity in ecological communities, fluctuation-dependent mechanisms that are mediated by temporal variability in the abundances of species populations have received significant attention. Higher temporal variability in the abundances of species populations can increase the strength of temporal niche partitioning but can also increase the risk of species extinctions, such that the net effect on species coexistence is not clear. We quantified this temporal population variability for tree species in 21 large forest plots and found much greater variability for higher latitude plots with fewer tree species. A fitted mechanistic model showed that among the forest plots, the net effect of temporal population variability on tree species coexistence was usually negative, but sometimes positive or negligible. Therefore, our results suggest that temporal variability in the abundances of species populations has no clear negative or positive contribution to the latitudinal gradient in tree species richness.
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Affiliation(s)
- Tak Fung
- Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, Singapore, 117558, Singapore
| | - Ryan A Chisholm
- Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, Singapore, 117558, Singapore
| | - Kristina Anderson-Teixeira
- Smithsonian Tropical Research Institute, Balboa, Ancón, Republic of Panamá.,Smithsonian Conservation Biology Institute, 1500 Remount Road, Front Royal, Virginia, 22630, USA
| | - Norm Bourg
- Smithsonian Conservation Biology Institute, 1500 Remount Road, Front Royal, Virginia, 22630, USA
| | - Warren Y Brockelman
- National Biobank of Thailand, BIOTEC, National Science and Technology Development Agency, Science Park, Klong Luang, Pathum Thani, Thailand.,Institute of Molecular Biosciences, Mahidol University, Salaya, Nakhon Pathom, Thailand
| | - Sarayudh Bunyavejchewin
- Research Office, Department of National Parks, Wildlife and Plant Conservation, Bangkok, 10900, Thailand
| | - Chia-Hao Chang-Yang
- Department of Biological Sciences, National Sun Yat-sen University, Kaohsiung
| | - Rutuja Chitra-Tarak
- Los Alamos National Laboratory, Los Alamos, P.O. Box 1663, New Mexico, 87545, USA
| | - George Chuyong
- Department of Botany and Plant Physiology, University of Buea, PO Box 63, Buea, SWP, Cameroon
| | - Richard Condit
- Field Museum of Natural History, 1400 S Lake Shore Dr, Chicago, IL, 60605, USA
| | | | - Stuart J Davies
- Smithsonian Institution Global Earth Observatory, Center for Tropical Forest Science, Smithsonian Institution, P.O. Box 37012, Washington, 20013, USA
| | | | - Gary Fewless
- Department of Natural and Applied Sciences, Lab Sciences 413, University of Wisconsin-Green Bay, 2420 Nicolet Drive, Green Bay, Wisconsin, 54311, USA
| | - Christine Fletcher
- Forest Research Institute Malaysia, 52109, Kepong, Selangor Darul Ehsan, Malaysia
| | - C V Savitri Gunatilleke
- Faculty of Science, Department of Botany, University of Peradeniya, Peradeniya, 20400, Sri Lanka
| | - I A U Nimal Gunatilleke
- Faculty of Science, Department of Botany, University of Peradeniya, Peradeniya, 20400, Sri Lanka
| | - Zhanqing Hao
- Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning
| | - J Aaron Hogan
- International Center for Tropical Botany, Department of Biological Sciences, Florida International University, Miami, Florida, 33199, USA
| | - Robert Howe
- Department of Natural and Applied Sciences, Lab Sciences 413, University of Wisconsin-Green Bay, 2420 Nicolet Drive, Green Bay, Wisconsin, 54311, USA
| | - Chang-Fu Hsieh
- Institute of Ecology and Evolutionary Biology, National Taiwan University, Taipei
| | - David Kenfack
- Smithsonian Institution Global Earth Observatory, Center for Tropical Forest Science, Smithsonian Institution, P.O. Box 37012, Washington, 20013, USA
| | - YiChing Lin
- Department of Life Science, Tunghai University, Taichung
| | - Keping Ma
- Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing
| | | | - Sean McMahon
- Smithsonian Environmental Research Center, P.O. Box 28, Edgewater, Maryland, 21037, USA
| | - William J McShea
- Smithsonian Conservation Biology Institute, 1500 Remount Road, Front Royal, Virginia, 22630, USA
| | - Xiangcheng Mi
- Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing
| | - Anuttara Nathalang
- National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Klong Luang, Pathum Thani, 12120, Thailand
| | - Perry S Ong
- Institute of Biology, University of the Philippines, Diliman, Quezon City, Philippines
| | - Geoffrey Parker
- Smithsonian Environmental Research Center, P.O. Box 28, Edgewater, Maryland, 21037, USA
| | - E-Ping Rau
- Master 1 Mention Écologie, Université Toulouse III Paul Sabatier, Toulouse, France
| | - Jessica Shue
- Smithsonian Environmental Research Center, P.O. Box 28, Edgewater, Maryland, 21037, USA
| | - Sheng-Hsin Su
- Forest Management Division, Taiwan Forestry Research Institute, Taipei
| | - Raman Sukumar
- Centre for Ecological Sciences, Indian Institute of Science, Bangalore, 560012, India.,Divecha Centre for Climate Change, Indian Institute of Science, Bangalore, 560012, India
| | - I-Fang Sun
- Department of Natural Resources and Environmental Studies, National Dong Hwa University, Hualien
| | - Hebbalalu S Suresh
- Centre for Ecological Sciences, Indian Institute of Science, Bangalore, 560012, India.,Divecha Centre for Climate Change, Indian Institute of Science, Bangalore, 560012, India
| | - Sylvester Tan
- Smithsonian Institution Global Earth Observatory, Center for Tropical Forest Science, Smithsonian Institution, P.O. Box 37012, Washington, 20013, USA
| | - Duncan Thomas
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA
| | - Jill Thompson
- Department of Environmental Science, University of Puerto Rico, P.O. Box 70377, San Juan, PR, 00936-8377, USA.,Centre for Ecology & Hydrology, Bush Estate, Penicuik, Midlothian, EH26 0QB, UK
| | - Renato Valencia
- Departamento de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Apartado 17-01-2184, Quito, Ecuador
| | - Martha I Vallejo
- Calle 37, Instituto Alexander von Humboldt, Number 8-40 Mezzanine, Bogotá, Colombia
| | - Xugao Wang
- Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning
| | - Yunquan Wang
- Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing
| | - Pushpa Wijekoon
- Faculty of Science, Department of Statistics & Computer Science, University of Peradeniya, Peradeniya, 20400, Sri Lanka
| | - Amy Wolf
- Department of Natural and Applied Sciences, Lab Sciences 413, University of Wisconsin-Green Bay, 2420 Nicolet Drive, Green Bay, Wisconsin, 54311, USA
| | - Sandra Yap
- Institute of Arts and Sciences, Far Eastern University Manila, Manila, Philippines
| | - Jess Zimmerman
- Department of Environmental Science, University of Puerto Rico, P.O. Box 70377, San Juan, PR, 00936-8377, USA
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18
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Thompson SED, Chisholm RA, Rosindell J. Characterising extinction debt following habitat fragmentation using neutral theory. Ecol Lett 2019; 22:2087-2096. [PMID: 31612627 DOI: 10.1111/ele.13398] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Revised: 08/25/2019] [Accepted: 09/09/2019] [Indexed: 01/13/2023]
Abstract
Habitat loss leads to species extinctions, both immediately and over the long term as 'extinction debt' is repaid. The same quantity of habitat can be lost in different spatial patterns with varying habitat fragmentation. How this translates to species loss remains an open problem requiring an understanding of the interplay between community dynamics and habitat structure across temporal and spatial scales. Here we develop formulas that characterise extinction debt in a spatial neutral model after habitat loss and fragmentation. Central to our formulas are two new metrics, which depend on properties of the taxa and landscape: 'effective area', measuring the remaining number of individuals and 'effective connectivity', measuring individuals' ability to disperse through fragmented habitat. This formalises the conventional wisdom that habitat area and habitat connectivity are the two critical requirements for long-term preservation of biodiversity. Our approach suggests that mechanistic fragmentation metrics help resolve debates about fragmentation and species loss.
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Affiliation(s)
- Samuel E D Thompson
- Department of Biological Sciences, Faculty of Science, National University of Singapore, 14 Science Drive 4, Singapore, 117543, Singapore.,Department of Life Sciences, Imperial College London, Silwood Park campus, Buckhurst Road, Ascot, Berkshire, SL5 7PY, UK
| | - Ryan A Chisholm
- Department of Biological Sciences, Faculty of Science, National University of Singapore, 14 Science Drive 4, Singapore, 117543, Singapore
| | - James Rosindell
- Department of Life Sciences, Imperial College London, Silwood Park campus, Buckhurst Road, Ascot, Berkshire, SL5 7PY, UK
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19
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Fung T, Verma S, Chisholm RA. Probability distributions of extinction times, species richness, and immigration and extinction rates in neutral ecological models. J Theor Biol 2019; 485:110051. [PMID: 31626812 DOI: 10.1016/j.jtbi.2019.110051] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Revised: 10/07/2019] [Accepted: 10/14/2019] [Indexed: 01/30/2023]
Abstract
In community ecology, neutral models make the assumption that species are equivalent, such that species abundances differ only because of demographic stochasticity. Despite their ecological simplicity, neutral models have been found to give reasonable descriptions of expected patterns of biodiversity in communities with many species. Such patterns include the expected total number of species and species-abundance distributions describing the expected number of species in different abundance classes. However, the expected patterns represent only the central tendencies of the full distributions of possible outcomes. Thus, ecological inferences and conclusions based only on expected patterns are incomplete, and may be misleading. Here, we address this issue for the spatially implicit neutral model, by using classic results from birth-death processes to derive (1) the probability distribution of extinction time of a species with given abundance for the metacommunity; (2) the probability distributions of total species richness and number of species with given abundance for both the metacommunity and local community; and (3) the probability distributions of the average immigration and extinction rates in the local community, across different values of total species richness. We illustrate the utility of these probability distributions in providing greater ecological insight via statistical inference. Firstly, we show that under the neutral metacommunity model, there is only 2.65×10-9 probability that the age of a common tree species in the Amazon is ≤ 3 × 108 yr, which is approximately the oldest estimated age of the first angiosperm. Thus, species ages from the model are unrealistically high. Secondly, for a tree community in a 50 ha plot at Barro Colorado Island in Panama, we show that the spatially implicit model can be fitted to observed species richness and an independent estimate of the immigration parameter, with the fitted model predicting a species-abundance distribution close to the observed distribution. Our results complement those using sampling formulae that specify the multivariate probability distribution of species abundances from neutral models.
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Affiliation(s)
- Tak Fung
- National University of Singapore, Department of Biological Sciences, 16 Science Drive 4, Singapore 117558, Singapore.
| | - Sonali Verma
- Scuola Normale Superiore, Department of Physics, Piazza dei Cavalieri, Pisa 7-56126, Italy.
| | - Ryan A Chisholm
- National University of Singapore, Department of Biological Sciences, 16 Science Drive 4, Singapore 117558, Singapore.
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20
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Farhang-Sardroodi S, Darooneh AH, Kohandel M, Komarova NL. Environmental spatial and temporal variability and its role in non-favoured mutant dynamics. J R Soc Interface 2019; 16:20180781. [PMID: 31409235 DOI: 10.1098/rsif.2018.0781] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Understanding how environmental variability (or randomness) affects evolution is of fundamental importance for biology. The presence of temporal or spatial variability significantly affects the competition dynamics in populations, and gives rise to some counterintuitive observations. In this paper, we consider both birth-death (BD) or death-birth (DB) Moran processes, which are set up on a circular or a complete graph. We investigate spatial and temporal variability affecting division and/or death parameters. Assuming that mutant and wild-type fitness parameters are drawn from an identical distribution, we study mutant fixation probability and timing. We demonstrate that temporal and spatial types of variability possess fundamentally different properties. Under temporal randomness, in a completely mixed system, minority mutants experience (i) higher than neutral fixation probability and a higher mean conditional fixation time, if the division rates are affected by randomness and (ii) lower fixation probability and lower mean conditional fixation time if the death rates are affected. Once spatial restrictions are imposed, however, these effects completely disappear, and mutants in a circular graph experience neutral dynamics, but only for the DB update rule in case (i) and for the BD rule in case (ii) above. In contrast to this, in the case of spatially variable environment, both for BD/DB processes, both for complete/circular graph and both for division/death rates affected, minority mutants experience a higher than neutral probability of fixation. Fixation time, however, is increased by randomness on a circle, while it decreases for complete graphs under random division rates. A basic difference between temporal and spatial kinds of variability is the types of correlations that occur in the system. Under temporal randomness, mutants are spatially correlated with each other (they simply have equal fitness values at a given moment of time; the same holds for wild-types). Under spatial randomness, there are subtler, temporal correlations among mutant and wild-type cells, which manifest themselves by cells of each type 'claiming' better spots for themselves. Applications of this theory include cancer generation and biofilm dynamics.
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Affiliation(s)
| | - Amir H Darooneh
- Department of Physics, University of Zanjan, Zanjan, Iran.,Department of Applied Mathematics, University of Waterloo, Waterloo, Ontario, Canada N2L 3G1
| | - Mohammad Kohandel
- Department of Applied Mathematics, University of Waterloo, Waterloo, Ontario, Canada N2L 3G1
| | - Natalia L Komarova
- Department of Mathematics, University of California Irvine, Irvine, CA 92697, USA
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21
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Yahalom Y, Steinmetz B, Shnerb NM. Comprehensive phase diagram for logistic populations in fluctuating environment. Phys Rev E 2019; 99:062417. [PMID: 31330701 DOI: 10.1103/physreve.99.062417] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Indexed: 06/10/2023]
Abstract
Population dynamics reflects an underlying birth-death process, where the rates associated with different events may depend on external environmental conditions and on the population density. A whole family of simple and popular deterministic models (such as logistic growth) supports a transcritical bifurcation point between an extinction phase and an active phase. Here we provide a comprehensive analysis of the phases of that system, taking into account both the endogenous demographic noise (random birth and death events) and the effect of environmental stochasticity that causes variations in birth and death rates. Three phases are identified: in the inactive phase the mean time to extinction T is independent of the carrying capacity N and scales logarithmically with the initial population size. In the power-law phase T∼N^{q}, and in the exponential phase T∼exp(αN). All three phases and the transitions between them are studied in detail. The breakdown of the continuum approximation is identified inside the power-law phase, and the accompanying changes in decline modes are analyzed. The applicability of the emerging picture to the analysis of ecological time series and to the management of conservation efforts is briefly discussed.
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Affiliation(s)
- Yitzhak Yahalom
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Bnaya Steinmetz
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Nadav M Shnerb
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
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22
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Fung T, O'Dwyer JP, Chisholm RA. Partitioning the effects of deterministic and stochastic processes on species extinction risk. ECOLOGICAL COMPLEXITY 2019. [DOI: 10.1016/j.ecocom.2019.03.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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23
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Meyer I, Shnerb NM. Noise-induced stabilization and fixation in fluctuating environment. Sci Rep 2018; 8:9726. [PMID: 29950588 PMCID: PMC6021438 DOI: 10.1038/s41598-018-27982-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Accepted: 06/05/2018] [Indexed: 01/07/2023] Open
Abstract
The dynamics of a two-species community of N competing individuals are considered, with an emphasis on the role of environmental variations that affect coherently the fitness of entire populations. The chance of fixation of a mutant (or invading) population is calculated as a function of its mean relative fitness, the amplitude of fitness variations and their typical duration. We emphasize the distinction between the case of pairwise competition and the case of global competition; in the latter a noise-induced stabilization mechanism yields a higher chance of fixation for a single mutant. This distinction becomes dramatic in the weak selection regime, where the chance of fixation for a single deleterious mutant is an N-independent constant for global competition and decays like (ln N)−1 in the pairwise competition case. A Wentzel-Kramers-Brillouin (WKB) technique yields a general formula for the chance of fixation of a deleterious mutant in the strong selection regime. The possibility of long-term persistence of large [\documentclass[12pt]{minimal}
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\begin{document}$${\mathscr{O}}$$\end{document}O(N)] suboptimal (and extinction-prone) populations is discussed, as well as its relevance to stochastic tunneling between fitness peaks.
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Affiliation(s)
- Immanuel Meyer
- Department of Physics, Bar-Ilan University, Ramat-Gan, IL52900, Israel
| | - Nadav M Shnerb
- Department of Physics, Bar-Ilan University, Ramat-Gan, IL52900, Israel.
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24
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Fung T, O’Dwyer JP, Chisholm RA. Quantifying species extinction risk under temporal environmental variance. ECOLOGICAL COMPLEXITY 2018. [DOI: 10.1016/j.ecocom.2017.09.006] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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25
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Danino M, Shnerb NM. Theory of time-averaged neutral dynamics with environmental stochasticity. Phys Rev E 2018; 97:042406. [PMID: 29758719 DOI: 10.1103/physreve.97.042406] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Indexed: 06/08/2023]
Abstract
Competition is the main driver of population dynamics, which shapes the genetic composition of populations and the assembly of ecological communities. Neutral models assume that all the individuals are equivalent and that the dynamics is governed by demographic (shot) noise, with a steady state species abundance distribution (SAD) that reflects a mutation-extinction equilibrium. Recently, many empirical and theoretical studies emphasized the importance of environmental variations that affect coherently the relative fitness of entire populations. Here we consider two generic time-averaged neutral models; in both the relative fitness of each species fluctuates independently in time but its mean is zero. The first (model A) describes a system with local competition and linear fitness dependence of the birth-death rates, while in the second (model B) the competition is global and the fitness dependence is nonlinear. Due to this nonlinearity, model B admits a noise-induced stabilization mechanism that facilitates the invasion of new mutants. A self-consistent mean-field approach is used to reduce the multispecies problem to two-species dynamics, and the large-N asymptotics of the emerging set of Fokker-Planck equations is presented and solved. Our analytic expressions are shown to fit the SADs obtained from extensive Monte Carlo simulations and from numerical solutions of the corresponding master equations.
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Affiliation(s)
- Matan Danino
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Nadav M Shnerb
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
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26
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West R, Mobilia M, Rucklidge AM. Survival behavior in the cyclic Lotka-Volterra model with a randomly switching reaction rate. Phys Rev E 2018; 97:022406. [PMID: 29548111 DOI: 10.1103/physreve.97.022406] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2017] [Indexed: 11/07/2022]
Abstract
We study the influence of a randomly switching reproduction-predation rate on the survival behavior of the nonspatial cyclic Lotka-Volterra model, also known as the zero-sum rock-paper-scissors game, used to metaphorically describe the cyclic competition between three species. In large and finite populations, demographic fluctuations (internal noise) drive two species to extinction in a finite time, while the species with the smallest reproduction-predation rate is the most likely to be the surviving one (law of the weakest). Here we model environmental (external) noise by assuming that the reproduction-predation rate of the strongest species (the fastest to reproduce and predate) in a given static environment randomly switches between two values corresponding to more and less favorable external conditions. We study the joint effect of environmental and demographic noise on the species survival probabilities and on the mean extinction time. In particular, we investigate whether the survival probabilities follow the law of the weakest and analyze their dependence on the external noise intensity and switching rate. Remarkably, when, on average, there is a finite number of switches prior to extinction, the survival probability of the predator of the species whose reaction rate switches typically varies nonmonotonically with the external noise intensity (with optimal survival about a critical noise strength). We also outline the relationship with the case where all reaction rates switch on markedly different time scales.
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Affiliation(s)
- Robert West
- Department of Applied Mathematics, School of Mathematics, University of Leeds, Leeds LS2 9JT, United Kingdom
| | - Mauro Mobilia
- Department of Applied Mathematics, School of Mathematics, University of Leeds, Leeds LS2 9JT, United Kingdom
| | - Alastair M Rucklidge
- Department of Applied Mathematics, School of Mathematics, University of Leeds, Leeds LS2 9JT, United Kingdom
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27
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Danino M, Shnerb NM. Fixation and absorption in a fluctuating environment. J Theor Biol 2018; 441:84-92. [DOI: 10.1016/j.jtbi.2018.01.004] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2017] [Revised: 12/27/2017] [Accepted: 01/02/2018] [Indexed: 10/18/2022]
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28
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Wienand K, Frey E, Mobilia M. Evolution of a Fluctuating Population in a Randomly Switching Environment. PHYSICAL REVIEW LETTERS 2017; 119:158301. [PMID: 29077432 DOI: 10.1103/physrevlett.119.158301] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2017] [Indexed: 06/07/2023]
Abstract
Environment plays a fundamental role in the competition for resources, and hence in the evolution of populations. Here, we study a well-mixed, finite population consisting of two strains competing for the limited resources provided by an environment that randomly switches between states of abundance and scarcity. Assuming that one strain grows slightly faster than the other, we consider two scenarios-one of pure resource competition, and one in which one strain provides a public good-and investigate how environmental randomness (external noise) coupled to demographic (internal) noise determines the population's fixation properties and size distribution. By analytical means and simulations, we show that these coupled sources of noise can significantly enhance the fixation probability of the slower-growing species. We also show that the population size distribution can be unimodal, bimodal, or multimodal and undergoes noise-induced transitions between these regimes when the rate of switching matches the population's growth rate.
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Affiliation(s)
- Karl Wienand
- Arnold Sommerfeld Center for Theoretical Physics, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstrasse 37, 80333 München, Germany
| | - Erwin Frey
- Arnold Sommerfeld Center for Theoretical Physics, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstrasse 37, 80333 München, Germany
| | - Mauro Mobilia
- Department of Applied Mathematics, School of Mathematics, University of Leeds, Leeds LS2 9JT, United Kingdom
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29
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Spanio T, Hidalgo J, Muñoz MA. Impact of environmental colored noise in single-species population dynamics. Phys Rev E 2017; 96:042301. [PMID: 29347568 PMCID: PMC7217512 DOI: 10.1103/physreve.96.042301] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2017] [Indexed: 12/17/2022]
Abstract
Variability on external conditions has important consequences for the dynamics and the organization of biological systems. In many cases, the characteristic timescale of environmental changes as well as their correlations play a fundamental role in the way living systems adapt and respond to it. A proper mathematical approach to understand population dynamics, thus, requires approaches more refined than, e.g., simple white-noise approximations. To shed further light onto this problem, in this paper we propose a unifying framework based on different analytical and numerical tools available to deal with “colored” environmental noise. In particular, we employ a “unified colored noise approximation” to map the original problem into an effective one with white noise, and then we apply a standard path integral approach to gain analytical understanding. For the sake of specificity, we present our approach using as a guideline a variation of the contact process—which can also be seen as a birth-death process of the Malthus-Verhulst class—where the propagation or birth rate varies stochastically in time. Our approach allows us to tackle in a systematic manner some of the relevant questions concerning population dynamics under environmental variability, such as determining the stationary population density, establishing the conditions under which a population may become extinct, and estimating extinction times. We focus on the emerging phase diagram and its possible phase transitions, underlying how these are affected by the presence of environmental noise time-correlations.
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Affiliation(s)
- Tommaso Spanio
- Instituto Carlos I de Física Teórica y Computacional and Departamento Electromagnetismo y Física de la Materia, Universidad de Granada, 18071 Granada, Spain.,Dipartimento di Fisica "G. Galilei" and CNISM, INFN, Università di Padova, Via Marzolo 8, 35131 Padova, Italy
| | - Jorge Hidalgo
- Dipartimento di Fisica "G. Galilei" and CNISM, INFN, Università di Padova, Via Marzolo 8, 35131 Padova, Italy
| | - Miguel A Muñoz
- Instituto Carlos I de Física Teórica y Computacional and Departamento Electromagnetismo y Física de la Materia, Universidad de Granada, 18071 Granada, Spain
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30
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Fried Y, Shnerb NM, Kessler DA. Alternative steady states in ecological networks. Phys Rev E 2017; 96:012412. [PMID: 29347089 DOI: 10.1103/physreve.96.012412] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Indexed: 11/07/2022]
Abstract
In many natural situations, one observes a local system with many competing species that is coupled by weak immigration to a regional species pool. The dynamics of such a system is dominated by its stable and uninvadable (SU) states. When the competition matrix is random, the number of SUs depends on the average value and variance of its entries. Here we consider the problem in the limit of weak competition and large variance. Using a yes-no interaction model, we show that the number of SUs corresponds to the number of maximum cliques in an Erdös-Rényi network. The number of SUs grows exponentially with the number of species in this limit, unless the network is completely asymmetric. In the asymmetric limit, the number of SUs is O(1). Numerical simulations suggest that these results are valid for models with a continuous distribution of competition terms.
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Affiliation(s)
- Yael Fried
- Department of Physics, Bar-Ilan University, Ramat-Gan IL52900, Israel
| | - Nadav M Shnerb
- Department of Physics, Bar-Ilan University, Ramat-Gan IL52900, Israel
| | - David A Kessler
- Department of Physics, Bar-Ilan University, Ramat-Gan IL52900, Israel
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31
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Malanson GP. Interactions and constraints in model species response to environmental heteroscedasticity. J Theor Biol 2017; 419:343-349. [PMID: 28223173 DOI: 10.1016/j.jtbi.2017.02.023] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Revised: 02/09/2017] [Accepted: 02/16/2017] [Indexed: 10/20/2022]
Abstract
Increasing environmental variability could exacerbate the effects of climate change on ecological processes such as population dynamics, or positive and negative effects (favorable or unfavorable weather) could balance. Such a balance could depend on constraints of the processes. Biological and spatial constraints are represented in a spatially explicit individual based simulation of an ecotone reduced to two species on a single environmental gradient. The effects of climate amelioration are simulated from a plant's-eye-view by increasing the establishment and decreasing the mortality rates. Variability is introduced as a random multiplier of these rates, and the strength of the variation is increased through the period of climate change. The biological constraints limit change in the rates, and the extent of the simulation grid represents a spatial constraint. A small increase in environmental variation, multiplied through time with climate change, increases extinction rates. The biological and spatial constraints have little effect on the response of populations. Instead, competition, based on the form of the species response functions to the environmental gradient at the point where they intersect, determines differences in population responses. Positive and negative variations in the environment do not balance because the responses are hierarchical and asymmetric. Differences persist because extinction during a negative anomaly cannot be reversed by a later positive one.
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Affiliation(s)
- George P Malanson
- Department of Geographical & Sustainability Sciences, University of Iowa, Iowa City, IA 52242 USA.
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32
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Hidalgo J, Suweis S, Maritan A. Species coexistence in a neutral dynamics with environmental noise. J Theor Biol 2017; 413:1-10. [DOI: 10.1016/j.jtbi.2016.11.002] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2016] [Revised: 10/28/2016] [Accepted: 11/04/2016] [Indexed: 11/30/2022]
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