Halogenated persistent organic pollutants in relation to trophic level in deep sea fish

Non-target analysis of organohalogenated contaminants in deep-sea fishes from the Mediterranean Sea by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry

The enhanced separation power and identification capabilities make comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry (GC × GC - ToF MS) a valuable instrumental alternative for non-target analysis (NTA). In the present study, GC × GC - ToF MS has been used for the NTA of chlorine- and bromine-containing compounds in composite livers of two scarcely investigated Mediterranean deep-sea fish species, hollowsnout grenadier (Coelorinchus caelorhincus) and roughsnout grenadier (Trachyrhinchus trachyrhinchus). Attention focused on the identification of organohalogenated compounds with structural characteristics similar to those of persistent organic pollutants (POPs). In total, 116 Cl-, Br- and mixed Cl/Br-compounds were either positively or tentatively identified in the analyzed liver samples. Up to 88 of these compounds were legacy POPs, being polychlorinated biphenyls (PCBs) and organochlorinated pesticides (OCPs) the most abundant and frequently detected families. The other 28 identified POP-like compounds were analytes not considered by current regulation and environmental monitoring programs, including, among others, degradation products of specific OCPs, naturally produced organohalogen compounds and several perchlorinated diethyldiphenylmethane-derivatives whose presence in the investigated species is reported here for the first time. The presence of other naturally occurring brominated and mixed halogenated compounds in these fish species is also described for the first time. Our results also showed differences in the accumulation profile of the identified compounds in both species. Thereby, anthropogenic POPs showed higher relative abundances in the livers of roughsnout grenadiers than those in hollowsnout grenadiers, while for naturally occurring compounds the opposite trend or similar levels were found in both species.

A large diversity of organohalogen contaminants reach the meso- and bathypelagic organisms in the Bay of Biscay (northeast Atlantic)

Deep-sea ecosystems play a key role in the cycling and vertical transfer of matter and energy in oceans. Although the contamination of deep-sea demersal and benthic organisms by persistent organic pollutants has been proven, deep pelagic species have been far less studied. To fill these gaps, we studied the occurrence of a large variety of hydrophobic organic contaminants including polychlorinated biphenyls (PCBs), organochlorine pesticides (OCPs), legacy and alternative brominated flame retardants (BFRs) and per- and polyfluoroalkyl substances (PFASs) in crustaceans and fish species collected in the Bay of Biscay, northeast Atlantic. The results highlighted the global predominance of PCBs in fish, followed by OCPs, PFASs and PBDEs, with highly variable concentrations among species. Most of the chlorinated or brominated contaminants showed increasing concentrations with increasing δ¹⁵N values, while most PFASs showed inverse trends. The contaminant profiles and diagnostic ratios revealed species-specific metabolic capacities and peculiar contribution of highly-brominated BFRs.

Microplastic occurrence in deep-sea fish species Alepocephalus bairdii and Coryphaenoides rupestris from the Porcupine Bank (North Atlantic)

Microplastic occurrence in marine biota has been reported in a wide range of animals, from marine mammals and seabirds to invertebrates. Commercial and shallow-water fish have been the subject of numerous works on microplastic ingestion, given their importance in human diet and accessibility. However, little is known about microlitter occurrence in fish species inhabiting the dark ocean, in the bathyal zone and there is a high degree of uncertainty about microplastic distribution in offshore areas and the deep sea. In this study, bathydemersal species Alepocephalus bairdii and Coryphaenoides rupestris from the Porcupine Bank caught between 985 and 1037 m depth were inspected for microdebris. The stomach contents were digested by the alkaline method plus ethanol addition to avoid clogging. A filament of Polyethylene Terephthalate (PET) was found in the stomach of a specimen of A. bairdii, representing 4% of the total sampled specimens of this species (i.e. prevalence in n = 25). However, when considering potential microplastics, the prevalence increased to 28% in both, A. bairdii and C. rupestris. This work provides the first baseline study of microplastic items in fish from such depths in the Atlantic and suggests these species might be used as biomonitors in future research.

Distinctive signatures of pathogenic and antibiotic resistant potentials in the hadal microbiome

BACKGROUND

Hadal zone of the deep-sea trenches accommodates microbial life under extreme energy limitations and environmental conditions, such as low temperature, high pressure, and low organic matter down to 11,000 m below sea level. However, microbial pathogenicity, resistance, and adaptation therein remain unknown. Here we used culture-independent metagenomic approaches to explore the virulence and antibiotic resistance in the hadal microbiota of the Mariana Trench.

RESULTS

The results indicate that the 10,898 m Challenger Deep bottom sediment harbored prosperous microbiota with contrasting signatures of virulence factors and antibiotic resistance, compared with the neighboring but shallower 6038 m steep wall site and the more nearshore 5856 m Pacific basin site. Virulence genes including several famous large translocating virulence genes (e.g., botulinum neurotoxins, tetanus neurotoxin, and Clostridium difficile toxins) were uniquely detected in the trench bottom. However, the shallower and more nearshore site sediment had a higher abundance and richer diversity of known antibiotic resistance genes (ARGs), especially for those clinically relevant ones (e.g., fosX, sul1, and TEM-family extended-spectrum beta-lactamases), revealing resistance selection under anthropogenic stresses. Further analysis of mobilome (i.e., the collection of mobile genetic elements, MGEs) suggests horizontal gene transfer mediated by phage and integrase as the major mechanism for the evolution of Mariana Trench sediment bacteria. Notably, contig-level co-occurring and taxonomic analysis shows emerging evidence for substantial co-selection of virulence genes and ARGs in taxonomically diverse bacteria in the hadal sediment, especially for the Challenger Deep bottom where mobilized ARGs and virulence genes are favorably enriched in largely unexplored bacteria.

CONCLUSIONS

This study reports the landscape of virulence factors, antibiotic resistome, and mobilome in the sediment and seawater microbiota residing hadal environment of the deepest ocean bottom on earth. Our work unravels the contrasting and unique features of virulence genes, ARGs, and MGEs in the Mariana Trench bottom, providing new insights into the eco-environmental and biological processes underlying microbial pathogenicity, resistance, and adaptative evolution in the hadal environment.

High inter-species variability in elemental composition of the twilight zone fauna varies implications for predators and exploitation by humans

While the importance of oceanic micronektonic species in biogeochemical cycles and in the transfer of matter in food webs is globally recognized, specific knowledge on elemental concentrations and their variability within this community is still poorly documented. Here, we report for the first time in the Bay of Biscay, North-East Atlantic, the body composition in various biological parameters and chemical elements of a meso-to bathypelagic micronektonic community. Stable carbon and nitrogen isotope compositions (δ¹³C, δ¹⁵N), C:N ratios, energy density, as well as the concentrations in 6 macro-minerals and 13 trace elements including essential (micro-nutrients) and non-essential elements (undesirables, with no know biological function) were measured in whole organisms of 4 crustacean and 11 fish species caught simultaneously around 800 m depth. The results showed a low variability of δ¹³C values, confirming that all studied species share the same habitat. On the contrary, large differences were observed among species for several elements. Trace elements showed the greatest variability (i.e. larger range of values), especially silver (Ag), arsenic (As), cadmium (Cd), cobalt and vanadium. Significant differences were also revealed among taxa for Ag, As, Cd, copper and strontium concentrations (with crustaceans > fish), as well as for δ¹⁵N values and phosphorus concentrations (with fish > crustaceans). Although concentrations varied greatly among species, they could be grouped according to their energy density and composition in 19 chemical elements, through hierarchical clustering analysis. Six functional groups of species have been thus identified, reflecting contrasted nutritional benefit and/or exposure to undesirables for predators feeding on this deep pelagic community. Finally, the concentrations measured for the potentially toxic trace elements (undesirables) exceeded the existing European thresholds for Cd and to a lesser extent mercury (Hg), which point out potential risks in the perspective of a future exploitation of these deep living resources by humans.

Persistent organic pollutants and chlorpyrifos in the cockfish Callorhinchus callorynchus (Holocephali: Callorhynchidae) from Argentine coastal waters: Influence of sex and maturity

Organic contaminants are of great environmental concern due to their negative impacts on coastal ecosystems, especially on highly vulnerable species as chondrichthyans. Accumulation of organochlorine pesticides (OCPs), polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs) and chlorpyrifos was assessed in muscle, gonads, and liver of the cockfish Callorhinchus callorynchus for both sexes and maturity stages. This species has a wide distribution in South Atlantic Ocean and it is an important resource for coastal Argentine fisheries. Pollutants were quantified by gas chromatography with electron capture detector and the distribution pattern found in C. callorynchus was the following: (∑OCPs+chlorpyrifos) > ∑PCBs>∑PBDEs. Endosulfan was predominant among OCP groups, penta-CBs and hexaCBs among PCBs and BDE 47, 66, 99, and 100 in PBDE group. The highest levels were found in liver followed by muscle and gonads. The highest percentage of lipids was also observed in the liver. Moreover, the concentrations of ∑OCPs and ∑PCBs in C. callorynchus liver varied with maturity stage, and ∑OCPs also with sexes. Females presented higher values than males, and mature individuals showed higher concentrations than immature ones, according with biological parameters such as age, sex, maturity stage, metabolic and redistribution processes and habitat use influence. These results indicate that C. callorynchus reflects a historical and recent contamination in their tissues, and therefore, especially females, becomes as a good biomonitor of these pollutants in the marine environment. To our knowledge, this work represents one of the few investigations on the occurrence of POPs and chlorpyrifos in chondrichtyans from South Atlantic Ocean; therefore more research is mandatory for an adequate management and conservation of existing fisheries and aquatic resources.

Organic pollutants in deep sea: Occurrence, fate, and ecological implications

The deep sea - an oceanic layer below 200 m depths - has important global biogeochemical and nutrient cycling functions. It also receives organic pollutants from anthropogenic sources, which threatens the ecological function of the deep sea. In this Review, critically examined data on the distribution of organic pollutants in the deep sea to outline the role of biogeochemical and geophysical factors on the global distribution and regional chemodynamics of organic pollutants in the deep sea. We found that the contribution of deep water formation to the influx of perfluorinated compounds reached a maximum, following peak emission, faster in young deep waters (< 10 years) compared to older deep waters (> 100 years). For example, perfluorinated compounds had low concentrations (< 10 pg L^-1) and vertical variations in the South Pacific Ocean where the ocean currents are old (< 1000 years). Steep geomorphologies of submarine canyons, ridges, and valleys facilitated the transport of sediments and associated organic pollutants by oceanic currents from the continental shelf to remote deep seas. In addition, we found that, even though an estimated 1.2-4.2 million metric tons of plastic debris enter the ocean through riverine discharge annually, the role of microplastics as vectors of organic pollutants (e.g., plastic monomers, additives, and attached organic pollutants) in the deep sea is often overlooked. Finally, we recommend assessing the biological effects of organic pollutants in deep sea biota, large-scale monitoring of organic pollutants, reconstructing historical emissions using sediment cores, and assessing the impact of deep-sea mining on the ecosystem.

Decadal Assessment of Polycyclic Aromatic Hydrocarbons in Mesopelagic Fishes from the Gulf of Mexico Reveals Exposure to Oil-Derived Sources

This study characterizes a decadal assessment of polycyclic aromatic hydrocarbons (PAHs) in the muscle tissues of mesopelagic fish species as indicators of the environmental health of the Gulf of Mexico (GoM) deep-pelagic ecosystem. Mesopelagic fishes were collected prior to the Deepwater Horizon (DWH) oil spill (2007), immediately post-spill (2010), 1 year after the spill (2011), and 5-6 years post-spill (2015-2016) to assess if the mesopelagic ecosystem was exposed to, and retained, PAH compounds from the DWH spill. Results indicated that a 7- to 10-fold increase in PAHs in fish muscle tissues occurred in 2010-2011 (4972 ± 1477 ng/g) compared to 2007 (630 ± 236 ng/g). In 2015-2016, PAH concentrations decreased close to the levels measured in 2007 samples (827 ± 138 ng/g); however, the composition of PAHs still resembles a petrogenic source similar to samples collected in 2010-2011. PAH composition in muscle samples indicated that natural sources (e.g., Mississippi River and natural seeps) or spatial variability within the GoM do not explain the temporal variability of PAHs observed from 2007 to 2016. Furthermore, analysis of different fish tissues indicated the dietary intake and maternal transfer of PAHs as the primary mechanisms for bioaccumulation in 2015-2016, explaining the elevated levels and composition of PAHs in ovarian eggs.

Microencapsulated fluorescent pH probe as implantable sensor for monitoring the physiological state of fish embryos

In vivo physiological measurement is a major challenge in modern science and technology, as is environment conservation at the global scale. Proper toxicological testing of widely produced mixtures of chemicals is a necessary step in the development of new products, allowing us to minimize the human impact on aquatic ecosystems. However, currently available bioassay-based techniques utilizing small aquatic organisms such as fish embryos for toxicity testing do not allow assessing in time the changes in physiological parameters in the same individual. In this study, we introduce microencapsulated fluorescent probes as a promising tool for in vivo monitoring of internal pH variation in zebrafish embryos. The pH alteration identified under stress conditions demonstrates the applicability of the microencapsulated fluorescent probes for the repeated analysis of the embryo’s physiological state. The proposed approach has strong potential to simultaneously measure a range of physiological characteristics using a set of specific fluorescent probes and to finally bring toxicological bioassays and related research fields to a new level of effectiveness and sensitivity.

Bioremediation at a global scale: from the test tube to planet Earth

Planet Earth's biosphere has evolved over billions of years as a balanced bio‐geological system ultimately sustained by sunpower and the large‐scale cycling of elements largely run by the global environmental microbiome. Humans have been part of this picture for much of their existence. But the industrial revolution started in the XIX century and the subsequent advances in medicine, chemistry, agriculture and communications have impacted such balances to an unprecedented degree – and the problem has nothing but exacerbated in the last 20 years. Human overpopulation, industrial growth along with unsustainable use of natural resources have driven many sites and perhaps the planetary ecosystem as a whole, beyond recovery by spontaneous natural means, even if the immediate causes could be stopped. The most conspicuous indications of such a state of affairs include the massive change in land use, the accelerated increase in the levels of greenhouse gases, the frequent natural disasters associated to climate change and the growing non‐recyclable waste (e.g. plastics and recalcitrant chemicals) that we release to the Environment. While the whole planet is afflicted at a global scale by chemical pollution and anthropogenic emissions, the ongoing development of systems and synthetic biology, metagenomics, modern chemistry and some key concepts from ecological theory allow us to tackle this phenomenal challenge and propose large‐scale interventions aimed at reversing and even improving the situation. This involves (i) identification of key reactions or processes that need to be re‐established (or altogether created) for ecosystem reinstallation, (ii) implementation of such reactions in natural or designer hosts able to self‐replicate and deliver the corresponding activities when/where needed in a fashion guided by sound ecological modelling, (iii) dispersal of niche‐creating agents at a global scale and (iv) containment, monitoring and risk assessment of the whole process.

Persistent Organic Pollutants in albacore tuna (Thunnus alalunga) from Reunion Island (Southwest Indian Ocean) and South Africa in relation to biological and trophic characteristics

The contamination of albacore tuna (Thunnus alalunga) by Persistent Organic Pollutants (POPs), namely polychlorinated biphenyls (PCBs) and dichlorodiphenyl-trichloroethane (DDT), was investigated in individuals collected from Reunion Island (RI) and South Africa's (SA) southern coastlines in 2013, in relation to biological parameters and feeding ecology. The results showed lower PCB and DDT concentrations than those previously reported in various tuna species worldwide. A predominance of DDTs over PCBs was revealed, reflecting continuing inputs of DDT. Tuna collected from SA exhibited higher contamination levels than those from RI, related to higher dietary inputs and higher total lipid content. Greater variability in contamination levels and profiles was identified in tuna from RI, explained by a higher diversity of prey and more individualistic foraging behaviour. PCB and DDT contamination levels and profiles varied significantly in tuna from the two investigated areas, probably reflecting exposure to different sources of contamination.

Persistent organochlorines in 13 shark species from offshore and coastal waters of Korea: Species-specific accumulation and contributing factors

Data on persistent organochlorines (OCs) in sharks are scarce. Concentrations of OCs such as polychlorinated biphenyls (PCBs) and organochlorine pesticides (OCPs) were determined in the muscle tissue of 13 shark species (n=105) collected from offshore (Indian and Pacific Oceans) and coastal waters of Korea, to investigate species-specific accumulation of OCs and to assess the potential health risks associated with consumption of shark meat. Overall OC concentrations were highly variable not only among species but also within the same species of shark. The concentrations of PCBs, DDTs, chlordanes, hexachlorobenzene, and heptachlor in all shark species ranged from <LOQ (limit of quantification) to 184 (mean: 35.0), <LOQ to 1135 (58.2), <LOQ to 56.2 (4.31), <LOQ to 18.8 (1.64) and <LOQ to 77.5 (1.37)ng/g lipid weight, respectively. The determined concentrations of PCBs and DDTs in shark in our study were relatively lower than those reported in other studies. Aggressive shark species and species inhabiting the Indian Ocean had the highest levels of OCs. Inter-species differences in the concentrations and accumulation profiles of OCs among shark species could be explained by differences in feeding habit and sampling locations. Several confounding factors such as growth velocity, trophic position, and regional contamination status may affect the bioaccumulation of OCs in sharks. Hazard ratios of non-cancer risk for all the OCs were below one, whereas the hazard ratios of lifetime cancer risks of PCBs and DDTs exceeded one, implying potential carcinogenic effects in the general population in Korea. This is the first report to document the occurrence of OCs in sharks from Korea.