Use of multiple functional traits of protozoa for bioassessment of marine pollution

Vertical variations and environmental heterogeneity drove the symphony of periphytic protozoan fauna in marine ecosystems

Periphytic protozoa are esteemed icons of microbial fauna, renowned for their sensitivity and role as robust bioindicators, pivotal for assessing ecosystem stress and anthropogenic impacts on water quality. Despite their significance, research exploring the community dynamics of protozoan fauna across diverse water columns and depths in shallow waters has been notably lacking. This is the first study that examines the symphony of protozoan fauna in different water columns at varying depths (1, 2, 3.5 and 5 m), in South China Sea. Our findings reveal that vertical changes and environmental heterogeneity plays pivotal role in shaping the protozoan community structure, with distinct preferences observed in spirotrichea and phyllopharyngea classes at specific depths. Briefly, diversity metrics (i.e., both alpha and beta) showed significantly steady patterns at 2 m and 3.5 m depths as well as high homogeneity in most of the indices was observed. Co-associations between environmental parameters and protozoan communities demonstrated temperature, dissolved oxygen, salinity, and pH, are significant drivers discriminating species richness and evenness across all water columns. Noteworthy variations of the other environmental parameters such as SiO3-Si, PO4--P, and NO2--N at 1 m and NO3--N, and NH4+-N, at greater depths, signal the crucial role of nutrient dynamics in shaping the protozoan communities. Moreover, highly sensitive species like Anteholosticha pulchara, Apokeronopsis crassa, and Aspidisca steini in varying environmental conditions among vertical columns may serve as eco- indicators of water quality. Collectively, this study contributes a thorough comprehension of the fine-scale structure and dynamics of protozoan fauna within marine ecosystems, providing insightful perspectives for ecological and water quality assessment in ever-changing marine environments.

An approach to evaluating seasonal responses to acute toxicity of antibiotic nitrofurazone on periphytic ciliated protist communities in marine environments

Periphytic protists including ciliates are the primary components of microbial communities in which they play a vital role in the progression of food webs by moving resources from lower to higher trophic levels. However, the toxic effects of veterinary antibiotics on periphytic protists across four seasons are minimally understood. Therefore, in this study, a 1-year survey was conducted with the antibiotic nitrofurazone (NFZ) applied at concentrations of 0.0, 1.5, 3.0, 6.0, and 12.0 mg/L. Samples of protist communities were collected using microscope glass slides during four seasons in the coastal waters of the Yellow Sea, Qingdao, northern China. The abundance of protists dropped with an increase in NFZ concentrations, and almost all species were dead at a concentration of 12.0 mg/L. The 12 h-LC50 values of NFZ for the protist biota were similar among the four seasons, despite significant seasonal variability in the community structure. The present results suggest that the periphytic protist biota may be used as a biomarker for assessing the ecotoxicity of NFZ in marine environments regardless of the year season.

Monitoring of Mycotoxigenic Fungi in Fish Farm Water and Fumonisins in Feeds for Farmed Colossoma macropomum

This study aimed to evaluate the occurrence of mycotoxigenic fungi in fish farm water and mycotoxins in feeds for farmed tambaqui (Colossoma macropomum). A total of 40 samples of freshwater from fish farms and 16 samples of feed were collected and analyzed for microbiology. A total of five species of free-living fungi were identified in fish farms: Aspergillus fumigatus, Penicillium citrinum, P. implicatum, Fusarium oxysporum and Alternaria alternata. These fungi species were counted in water samples at 35.14 CFU mL-1 and 24.69 CFU mL-1 in the dry seasons. In all fish farms, there was a higher abundance of fungi species in the rainy season. During visits to the fish farmers, it was possible to verify poor feed storage conditions. Concerning mutations in blood cells, in tambaqui (C. macropomum), a total of 159 anomalies were found, and in Leptodactylus petersii, 299 anomalies were found, with higher incidences in conditions above 1.0 CFU mL-1 in log10(x+1) fungi and in the rainy season. The occurrence of mycotoxicological contamination was confirmed in 81.25% of the analyzed samples. The quantified mycotoxin was Fumonisins B1 + B2 (375 to 1418 μg kg-1). Pearson's correlation analysis showed a significant positive correlation between Fumonisins and feed samples (r = 0.83). There was also a significant positive correlation between the abundance of fungi in water and the quantification of Fumonisins (r = 0.79). Based on the results obtained, it can be concluded that free-living fungi can be used as bioindicators of water quality in fish farms. Consequently, the lack of good management practices caused microbiological contamination of the aquatic environment.

Antibiotic nitrofurazone drives the functional dynamics of periphytic protozoan fauna in marine environments

The use of functional traits of a community as a method to measure its functional dynamics in response to environmental change has gained attention because trait-based approaches offer systematic opportunities to understand the interactions between species diversity and ecosystem function. However, the relationship between functional traits of periphytic protozoa and contamination of aquatic habitats with antibiotics is poorly understood. In this study, we investigated the influence of the antibiotic nitrofurazone on functional traits of marine periphytic protozoan fauna. For this purpose, the protozoan assemblages were collected from coastal waters of the Yellow Sea at Qingdao, northern China, during four seasons of a one-year cycle using glass microscope slides as artificial substrates. The test protozoan communities were then exposed to various treatments of nitrofurazone in laboratory bioassay experiments. Our results demonstrated that the modalities of the functional traits of protozoan communities were generally driven by nitrofurazone toxicity. Briefly, R-mode linked to Q-mode (RLQ) and fourth-corner analyses revealed strong positive correlations between functional traits and nitrofurazone treatments. Trait syndromes in terms of body length, width, weight, height, and size to volume ratios were significantly influenced by nitrofurazone exposure. In particular, small and medium body size species of different feeding types, i.e., algivores, bacterivores, raptors or non-selectives, were more sensitive than other protozoan species to higher concentrations of nitrofurazone. Our findings demonstrate that antibiotic toxicity is likely to affect periphytic protozoan community function, shape the functional processes, and induce toxic responses in the community. The findings of this study suggest that periphytic protozoan communities and their functional traits are suitable bioindicators for evaluating the ecotoxicity of nitrofurazone in marine environments.

Can functional units of periphytic protozoan communities be used to evaluate the effects of harmful algal blooms on ecological quality in marine ecosystems?

Based on biological traits, the ecological quality status under the pressure of two harmful algal bloom (HAB) species was evaluated using functional units (FUs) of periphytic protozoan communities. Five treatments with different concentrations of Alexandrium tamarense and Gymnodinium catenatum, i.e., 100, 102, 103, 104, and 105 cells ml-1, were used. A total of 20 FUs were identified from 25 test protozoan species. Among these FUs, vagile algivores with large sizes showed a decreasing trend (i.e., in diversity and abundance) with increasing concentrations of algae, while vagile bacterivores and non-selectives with small sizes dominated at concentrations of 104 cells ml-1 of both algal species. Ellipse tests on pair-wise functional distinctness indices revealed a significant departure of test protozoan communities from an expected functional distinctness breadth when algal concentrations exceeded 104 cells ml-1. Based on these findings, it was concluded that FUs of periphytic protozoa may be a useful tool for evaluating the effects of HABs on ecological quality status in marine ecosystems.

Effects of nitrofurazone on ecosystem function in marine environments: A case study on microbial fauna

To evaluate the effects of nitrofurazone on functional processes in marine ecosystems, periphytic protozoan communities were exposed to different concentrations of the antibiotic for a 10-day duration. Species trait distributions in the tested communities were observed during exposure to five concentrations of nitrofurazone. A fuzzy coding system with seven traits and seventeen categories was used to summarize the changes in functional patterns of the test organisms. Nitrofurazone had a significant influence on the function process of the periphytic ciliate communities. Bacterivores with flattened bodies were sensitive to the toxicant whereas sessile and cylindrical raptors showed a high tolerance to nitrofurazone, invariably dominating communities exposed to high concentrations. Bootstrapped-average analysis demonstrated a significant change in functional patterns at highest nitrofurazone concentrations (8 mg l^-1). Based on these findings, it is suggested that nitrofurazone may negatively influence ecosystem function in marine environments.

Ecology of planktonic ciliates in a changing world: Concepts, methods, and challenges

Plankton ecologists ultimately focus on forecasting, both applied and environmental outcomes. We review how appreciating planktonic ciliates has become central to these predictions. We explore the 350-year-old canon on planktonic ciliates and examine its steady progression, which has been punctuated by conceptual insights and technological breakthroughs. By reflecting on this process, we offer suggestions as to where future leaps are needed, with an emphasis on predicting outcomes of global warming. We conclude that in terms of climate change research: (i) climatic hotspots (e.g. polar oceans) require attention; (ii) simply adding ciliate measurements to zooplankton/phytoplankton-based sampling programs is inappropriate; (iii) elucidating the rare biosphere's functional ecology requires culture-independent genetic methods; (iv) evaluating genetic adaptation (microevolution) and population composition shifts is required; (v) contrasting marine and freshwaters needs attention; (vi) mixotrophy needs attention; (vii) laboratory and field studies must couple automated measurements and molecular assessment of functional gene expression; (viii) ciliate trophic diversity requires appreciation; and (ix) marrying gene expression and function, coupled with climate change scenarios is needed. In short, continued academic efforts and financial support are essential to achieve the above; these will lead to understanding how ciliates will respond to climate change, providing tools for forecasting.

Community reassemblies of eukaryotes, prokaryotes, and viruses in the hexabromocyclododecanes-contaminated microcosms

The microbial community in seriously contaminated environment were not well known. This research investigated the community reassemblies in microcosms made of two distinct mangrove sediments amended with high levels of hexabromocyclododecanes (HBCDs). After eight months of contamination, the transformation of HBCDs yielded various lower brominated products and resulted in acidification (pH ~2). Therefore, the degraders and dehalogenase homologous genes involved in transformation of HBCDs only presented in low abundance to avoid further deterioration of the habitats. Moreover, in these deteriorated habitats, 1344 bacterial, 969 archaeal, 599 eukaryotic (excluded fungi), 187 fungal OTUs, and 10 viral genera, were reduced compared with controls. Specifically, in two groups of microcosms, Zetaproteobacteria, Deinococcus-Thermus, Spirochaetes, Bacteroidetes, Euryarchaeota, and Ascomycota, were positively responding taxa to HBCDs. Caloneis (Bacillariophyta) and Ascomycota turned to the dominant eukaryotic and fungal taxa. Most of predominant taxa were related to the contamination of brominated flame retardants (BFRs). Microbial communities were reassembled in divergent and sediment-dependent manner. The long-term contamination of HBCDs leaded to the change of relations between many taxa, included some of the environmental viruses and their known hosts. This research highlight the importance of monitoring the ecological effects around plants producing or processing halogenated compounds.

Insights for monitoring surveys into influence of tidal events on protozoan periphyton fauna along the tidelines of Yellow Sea, Northern China

To explore the influence of tidal events on protozoan periphyton fauna along tidelines, a 1-month baseline survey for bioassessment was conducted in an intertidal zone of the Yellow Sea, Northern China. A total of 27 protozoans species were identified among five sampling sites along five tidelines (sites A-E). The periphytic protozoans showed a significant variation in species distribution and community pattern along five tidelines. Species richness decreased from the high tideline (site A) and reached the minimum value at the middle tideline (site C), followed by an increase up to the low tideline (site E). Individual abundances peaked at site C and leveled off at the other four tidelines. Species richness, evenness, and diversity showed low value at site C compared with those at the other four sites. These findings suggest that periphytic protozoan fauna was shaped by tidal events along the tidelines of marine ecosystems.

Use of functional units of periphytic protozoa for monitoring water quality in marine ecosystems: bioindicator redundancy

Although periphytic protozoan communities have long been used for the bioassessment of water quality, their utility is hampered by functional redundancy, leading to high "signal-to-noise" ratios. In this study, a 1-year baseline survey of periphytic protozoan communities was carried out in coastal waters of the Yellow Sea, northern China, in order to determine redundancy levels in conditions of differing water quality. Samples were collected at four sampling sites along a pollution gradient. Environmental variables such as salinity, chemical oxygen demand (COD), and concentrations of dissolved oxygen (DO), soluble reactive phosphates (SRP), ammonium nitrogen (NH4-N), and nitrate nitrogen (NO3-N) were measured to compare with biotic factors. A total of 53 functional units (FUs) were identified from 144 observed protozoan species based on four biological traits, i.e., feeding type, body size, movement type, and source of food supply. For reducing the "signal-to-noise" ratios of species-abundance/biomass data, the peeling procedure was used to identify the bioindicator redundancy levels based on these FUs. Three consecutive subsets of response units (RU1-RU3) with correlation coefficients > 0.75 of the full FU dataset were identified, comprising 12 FUs, 21 FUs, and 9 FUs, respectively. Algivores and bacterivores were dominant in RU1 and RU2 among the polluted sites, whereas raptors were dominant in RU3 at the unpolluted site. In terms of relative abundance, RU1 was the primary contributor to the protozoan communities during the 1-year cycle and its relative abundance increased with the increasing pollution, whereas RU2 and RU3, with complementary temporal distributions, generally decreased with increasing pollution. Ordinations based on bootstrapped average analyses revealed a significant variation in the functional pattern of all three RUs among the four sampling sites. Biological-environmental match analysis demonstrated that the variability was driven by the increasing concentrations of nutrients (e.g., NH4-N, NO3-N, and PO4-P) and decreasing concentrations of DO (P < 0.05). There were high levels of functional redundancy among periphytic protozoan communities which could be used as bioindicators of marine water quality.

Can tidal events influence analysis on colonization dynamics in body-size spectrum of periphytic ciliates for marine bioassessment?

The tidal influence on body-size spectrum of the protozoan periphytons was explored by using the conventional slide system (CS) and the polyurethane foam enveloped slide system (PFES) in coastal waters during a 1-month study. During the colonization process, clear temporal patterns of the body-size spectrum were observed using the two sampling methods. In terms of relative species number and frequency of occurrence, the rank S4 represented a more stable temporal variability in the PFES system than the CS system during the colonization. Additionally, the small forms (e.g., S1, S2, and S3) were more abundant in the PFES system. The clustering and bootstrapped average analyses demonstrated differences in body-size spectrum of protozoans between the two sampling systems. Our results imply that the body-size spectrum of protozoan periphytons may be impacted by tidal events during colonization process in marine waters.

An approach to evaluating the acute toxicity of nitrofurazone on community functioning using protozoan periphytons

The acute toxicity of nitrofurazone on community functioning was studied using an acute toxicity test. Consequently, 14-day protozoan periphyton assemblages were used as test organism communities, under a range of nitrofurazone concentrations including 0 (control), 0.5, 3, 6, and 12 mg ml^-1 within 0, 2, 4, 6, 8, 10, and 12 h time duration. Fuzzy coding system of functional traits classified the test protozoan periphyton community into six major traits and 15 categories. Briefly, community-weighted means (CWM) were used to identify the community functioning of test protozoan assemblage. Inferences demonstrate a drastic/significant variation in the functional patterns of the test organisms at a high concentration (12 mg ml^-1) after an exposure time of 12 h, but the functional diversity indices leveled off at the exposure time of 10 h and then dropped sharply. These results suggested that nitrofurazone may significantly influence the community functioning in marine ecosystems.

The performance of taxonomic and trait-based approaches in the assessment of dusky flounder parasite communities as indicators of chemical pollution

We assessed the performance of taxonomic and several functional trait-based approaches in the assessment of spatial and temporal patterns of dusky flounder (Syacium papillosum) parasite assemblages along the Yucatan shelf to determine their potential as bioindicators of marine chemical pollution. Fish specimens were collected throughout three research cruises that took place in 2015, 2016 and 2018. In addition to the traditional taxonomic approach, four trait-based approaches were performed including community-weighted means (CWM), functional trait niche (FTN), functional groups (FGs), and Rao's functional diversity (FD). Significant spatial and temporal variations in parasite communities were detected using the taxonomic approach. In general, these variations were also reflected in the four trait-based approaches performed, indicating that changes in taxa composition and abundance also resulted in functional composition shifts. Resemblance matrices of both taxonomic and functional trait approaches were significantly correlated. Variations in taxonomic and trait-based composition using the four approaches were significantly correlated with depth, and at least one chemical pollutant variable. Feeding mode, transmission, life stage and attachment structure displayed spatial variability and significant correlations with predictor variables, which indicates that this set of attributes functions as a good surrogate for assessing variations in the functional composition of flatfish parasite communities in relation to pollution. FTN and CWM were the approaches that best detected spatio-temporal variation. CWM and FD were best suited for detecting pollution gradients. These results reveal the feasibility of using trait-based approaches to assess marine parasite communities as bioindicators of chemical pollution. Functional traits of marine metazoan parasites are as good indicators of the effect of oil pollution as taxonomic diversity. This may be a time-saving and cost-effective approach to performing environmental assessments.

Use of biological trait analysis of periphytic protozoan assemblages for evaluating effects of harmful algal blooms on ecological quality status in marine ecosystem

The effects of two harmful algal bloom (HAB) species Alexandrium tamarense and Gymnodinium catenatum on ecological quality status were studied using 14-day protozoan samples as test organisms. A fuzzy coding system with four traits and 11 categories of the test organisms was used for biological trait analysis. Five treatments were designed following the concentrations of 10⁰, 10², 10³, 10⁴ and 10⁵ cell ml^-1 of each algal species. The community-weighted means were used to summarize the functioning process of the test organism assemblages. The community functioning of the protozoa showed a significant change in the treatments with high algal concentrations (10⁴ and 10⁵ cell ml^-1). The functional richness of the test organisms showed continuous increasing trend from 10² to 10⁴ cell ml^-1, and sharply dropped. These findings suggest that the BTA may be used as a useful tool for assessing the effects of HABs on ecological quality status in marine ecosystems.

Seasonal variation in biological trait distribution of periphytic protozoa in coastal ecosystem: A baseline study for marine bioassessment

To reveal the seasonal variability in biological trait distribution for monitoring surveys based on periphytic protozoa, a baseline survey was carried out in a coastal region of Yellow Sea, northern China. A total of 40 slide samples were collected in a four season cycle after an exposure time period of 14 days. The results demonstrated that: (1) the community-weighted means (CWM) of algivores with large and medium sizes were high in spring and summer, while bacterivores with small size were high in autumn and winter; (2) there was a significant seasonal variation in the protozoan community functions, especially from spring/summer to autumn and winter; and (3) functional diversity indices generally peaked in spring or summer. Thus, there was a significant seasonal variation in protozoan community functions and this approach may be used to determine an optimal sampling strategy for monitoring programs in marine ecosystems.

Seasonal variability in biological trait pattern of biofilm-dwelling protozoa in colonization surveys for marine bioassessment

Biological trait analysis (BTA) has been proved to be a powerful tool to evaluate marine water quality. The species trait distributions of biofilm-dwelling protozoa were studied in a coastal region of the Yellow Sea, northern China, during a four-season cycle. The BTA demonstrated that: (1) the protozoa showed a significant seasonal variability in biological trait pattern during the colonization process across four seasons; (2) the colonization dynamics in species trait distribution followed different temporal models; (3) the functional dynamics in spring and summer were significantly different from those in autumn and winter (P < 0.05); and (4) functional diversity showed lower values in spring and summer than in autumn and winter. These findings suggest that BTA is subject to a high seasonal variability during colonization surveys when protozoa are used as bioindicators of marine water quality.

Seasonal variability in body-size spectrum of periphytic protozoa during colonization of artificial substrates for marine bioassessment

To identify the seasonal variability of body-size spectrum for monitoring surveys based on periphytic protozoa, a one-year baseline survey was carried out in a coastal region of Yellow Sea, northern China. A total of 240 glass slides were collected after immersion times of 3, 7, 10, 14, 21 and 28 days in a four season cycle, i.e., winter, spring, summer, and autumn. Body-size ranks S2 and S5 dominated the periphytic protozoan communities from the initial stage (from day 3) to the next periods in spring and autumn, while body-size ranks S7, S8 and S4 showed high variety at the equilibrium stages (from day 10) in summer and winter. The expectation analysis revealed that the samples had different patterns of departure from the anticipated body-size spectrum in each season. This study shows that an ideal sampling approach needs to be established when protozoa is used as bioindicators of marine water quality.

Role of bacterivorous organisms on fungal-based systems for natural tannin degradation

Tannery wastewater presents high concentrations of organic load and pollutant recalcitrant molecules (e.g. tannins), which reduce the efficiency of biological treatment processes. Recent studies showed that several fungal species and strains are effective in the degradation of tannins. However, high bacterial load can negatively affect fungal growth, reducing system stability and degradation performances.

The aim of the present study was to evaluate the effects of the introduction of bacterivorous grazers (ciliates and/or rotifers) in batch scale experiments using fungi to remove Tara tannin, i.e. to check the potential synergistic effect between fungi and bacterivorous grazers in the degradation of recalcitrant compounds. In this context, the ciliated grazers Paramecium calkinsi, Tetrahymena sp., Pseudovorticella sp., and the rotifer Lecane inermis, preliminary selected according to their ability to grow in a solution prepared with Tara tannin, were separately tested. Activated sludge, including a complex mixture of native grazers, was used as experimental control. The following parameters were monitored: bacterial load, number of grazers/mL and Soluble Chemical Oxygen Demand (SCOD). Colony Forming Unit (CFU)/grazers ratio was also calculated. Particular attention was paid to: i) bacterial load reduction and ii) enhancement of recalcitrant compounds degradation, and we observed that in all experimental conditions where grazers occurred bacterial load was significantly reduced and the system achieved a higher SCOD removal in a shorter time. Our findings provide useful insights for the stabilization of fungal-based systems in non-sterile conditions.

Using Cilioplankton as an Indicator of the Ecological Condition of Aquatic Ecosystems

We assess the quality of surface water in water bodies located in the Middle Volga region (Russian Federation). The water quality is assessed using 19 chemical compounds and cilioplankton indicators, such as the total number of species, the abundance of each species, and, based on both of them, the saprobity index and the Shannon–Weaver diversity index (H). We classify the water quality from polluted to extremely dirty by using abiotic indicators, and from conditionally clean to dirty by means of biotic indicators. Using the logistic regression method, we are able to predict the water quality (clean or dirty) in correspondence with the species diversity index (H) and to clarify how the quality of the water is related to its physicochemical properties. The seven most significant chemical predictors of both natural origin (mineralization, hydro carbonates, and chlorides) and natural-anthropogenic origin (organic substances (according to BOD5), nitrates, total petroleum hydrocarbons, iron), identified during the stepwise selection procedure, have a substantial influence on the outcome of the model. Qualitative and quantitative indicators of development of ciliates, as well as indices calculated on their basis, allow assessing with a very high level of accuracy the water quality and the condition of aquatic ecosystems in general. The Shannon index calculated for the number of ciliates can be successfully used for ranking water bodies as “clean/dirty”.

Limited congruence exhibited across microbial, meiofaunal and macrofaunal benthic assemblages in a heterogeneous coastal environment

One of the most common approaches for investigating the ecology of spatially complex environments is to examine a single biotic assemblage present, such as macroinvertebrates. Underlying this approach are assumptions that sampled and unsampled taxa respond similarly to environmental gradients and exhibit congruence across different sites. These assumptions were tested for five benthic groups of various sizes (archaea, bacteria, microbial eukaryotes/protists, meiofauna and macrofauna) in Plymouth Sound, a harbour with many different pollution sources. Sediments varied in granulometry, hydrocarbon and trace metal concentrations. Following variable reduction, canonical correspondence analysis did not identify any associations between sediment characteristics and assemblage composition of archaea or macrofauna. In contrast, variation in bacteria was associated with granulometry, trace metal variations and bioturbation (e.g. community bioturbation potential). Protists varied with granulometry, hydrocarbon and trace metal predictors. Meiofaunal variation was associated with hydrocarbon and bioturbation predictors. Taxon turnover between sites varied with only three out of 10 group pairs showing congruence (meiofauna-protists, meiofauna-macrofauna and protists-macrofauna). While our results support using eukaryotic taxa as proxies for others, the lack of congruence suggests caution should be applied to inferring wider indicator or functional interpretations from studies of a single biotic assemblage.

Identifying indicator redundancy of biofilm-dwelling protozoa for bioassessment in marine ecosystems

A multivariate peeling method of data analysis was applied to determine indicator redundancy and for identifying indicator units (IUs) among biofilm-dwelling ciliate communities used for bioassessment of marine water quality. Samples were taken monthly over a 1-year period at four stations in coastal waters of the Yellow Sea: one heavily polluted, one moderately polluted, one intermittently polluted, and one unpolluted. Four IUs (IU1-4) were identified consisting of 22, 13, 14, and 17 species, respectively, out of a total of 144 species. The IUs showed significant correlation with temporal and spatial variations in environmental variables. The redundancy levels of IUs were interchangeable in time and space. However, IU1 and IU2 generally dominated the communities in moderately and intermittently polluted areas during cool (e.g., early spring, late autumn, and winter) and warm (late spring and early autumn) seasons; IU3 dominated in warm seasons (e.g., late spring to autumn) in the heavily polluted area; and IU4 mainly dominated the samples in the unpolluted and moderately polluted areas during the late summer and early autumn. Furthermore, different trophic-functional groupings were represented within the four IUs and these were generally associated with water quality status. These findings suggest that there is high indicator redundancy in marine biofilm-dwelling ciliate communities subjected to different levels of water quality.

Can pelagic ciliates indicate vertical variation in the water quality status of western Arctic pelagic ecosystems?

The vertical pattern of pelagic ciliate communities was observed at eight layers in the Chukchi Sea and the northern Bering Sea of the western Arctic Ocean during the summer sea-ice reduction period (August 5 to August 24, 2016). A total of 44 ciliate species were identified, with seven species dominated the communities in the water column. Multivariate and univariate analyses demonstrated that: (1) community structures of ciliates vary significantly among eight water depths; (2) variations in the vertical distribution of ciliates were significantly correlated with changes in physicochemical variables, especially the ammonia; (3) the distributions of the three dominant species were significantly and positively related to the chlorophyll a and ammonia concentrations; and (4) species richness and abundance were significantly and positively correlated with the concentrations of ammonia and chlorophyll a. These results suggest that pelagic ciliates may reflect vertical variations in the water quality status of western Arctic ecosystems.

Vertical shift in ciliate body-size spectrum and its environmental drivers in western Arctic pelagic ecosystems

As an inherent functional trait, body-size spectrum is widely used as an informative indicator to summarize community structures in taxon-free space. The vertical shift in the body-size spectrum of pelagic ciliates and its environmental drivers were explored at eight depth layers from the water surface to a depth of 100 m in western Arctic pelagic ecosystems. A total of 85 samples were collected at 23 sampling stations during the summer sea-ice reduction period from August 5 to August 24, 2016. Based on equivalent spherical diameter (ESD), six body-size ranks were identified, of which ranks S2 (15-25 μm), S3 (26-38 μm), S4 (39-60 μm), and S6 (79-91 μm) were the top four levels in frequency of occurrence and ranks S2 and S3 were the dominant levels in abundance. The body-size spectrum of the ciliates showed a clear vertical shift, with a significant succession among the dominant body-size units from the water surface to deeper layers in the water column. Multivariate analysis demonstrated a significant vertical variation in the body-size spectrum of the ciliates among the eight depths, which was significantly correlated with nutrients (phosphate and nitrite + nitrate) and chlorophyll a (Chl a), alone or in combination with dissolved oxygen. Four body-size diversity/distinctness indices were significantly correlated with the levels of phosphate, nitrite + nitrate, ammonium, and Chl a. Our results demonstrated that the body-size spectrum of pelagic ciliates can be shifted by environmental drivers (mainly nutrients and Chl a); thus, we suggest that it may be used to indicate water quality status on a vertical scale in the water column in deep seas.

Trophic-functional patterns of biofilm-dwelling ciliates at different water depths in coastal waters of the Yellow Sea, northern China

Vertical variations in trophic-functional patterns of biofilm-dwelling ciliates were studied in coastal waters of the Yellow Sea, northern China. A total of 50 species were identified and assigned to four trophic-functional groups (TFgrs): algivores (A), bacterivorous (B), non-selective (N) and raptors (R). The trophic-functional structures of the ciliate communities showed significant variability among different water depths: (1) with increasing water depth, relative species numbers and relative abundances of groups A and R decreased sharply whereas those of groups B and N increased gradually; (2) in terms of the frequency of occurrences, group A dominated at depths of 1-3.5 m whereas group B dominated at 5 m, while in terms of the probability density function of the trophic-functional spectrum, group A was the highest contributor at 1 m and group B was highest at the other three depths; (3) distance-based redundancy analyses revealed significant differences in trophic-functional patterns among the four depths, except between 2 and 3.5 m (P > 0.05); and (4) the trophic-functional trait diversity increased from 1 to 3.5 m and decreased sharply at 5 m. Our results suggest that the biofilm-dwelling ciliates maintain a stable trophic-functional pattern and high biodiversity at depths of 1-3.5 m.