Evaluation of the pathogenesis of non-typical strain with α-hemolysin, Vibrio parahaemolyticus 353, isolated from Chinese seafood through comparative genome and transcriptome analysis

Functional role of rpoN in regulating the virulence of non-O1/O139 Vibrio cholerae

Non-O1/O139 Vibrio cholerae is widely distributed in brackish and estuarine ecosystems, which can infect many aquatic animals. RpoN, an alternative sigma factor, plays a critical role in regulating cell functions such as motility, quorum sensing, and virulence. However, the function of rpoN in non-O1/O139 V. cholerae has rarely been reported. In the present study, we constructed the deletion mutant ΔrpoN of non-O1/O139 V. cholerae GXFL1-4 using recombination technology and investigated the function of rpoN through transcriptomic and phenotypic analyses. RNA-seq results showed that many major virulence-related genes were down-regulated in the ΔrpoN mutant, including the type VI secretion system (tssJ, tssA, tagO, tssG), type IV pilus assembly proteins (pilM, pilB), biofilm formation genes (vpsC, cheC), and hemolysin-related genes (hlyD, hlyD-PA). Additionally, phenotypic assays showed that the growth and motility of the ΔrpoN had no apparent change. The deletion of rpoN in non-O1/O139 V. cholerae led to decreased biofilm formation and reduced hemolytic activity. Furthermore, artificial infection tests showed that the virulence of the ΔrpoN mutant toward Macrobrachium rosenbergii was decreased. Our study provides essential insights into the regulatory function of rpoN, revealing that rpoN is a key determinant of virulence regulation in non-O1/O139 V. cholerae.

Bioinformatics combined with machine learning unravels differences among environmental, seafood, and clinical isolates of Vibrio parahaemolyticus

Vibrio parahaemolyticus is the leading cause of illnesses and outbreaks linked to seafood consumption across the globe. Understanding how this pathogen may be adapted to persist along the farm-to-table supply chain has applications for addressing food safety. This study utilized machine learning to develop robust models classifying genomic diversity of V. parahaemolyticus that was isolated from environmental (n = 176), seafood (n = 975), and clinical (n = 865) sample origins. We constructed a pangenome of the respective genome assemblies and employed random forest algorithm to develop predictive models to identify gene clusters encoding metabolism, virulence, and antibiotic resistance that were associated with isolate source type. Comparison of genomes of all seafood-clinical isolates showed high balanced accuracy (≥0.80) and Area Under the Receiver Operating Characteristics curve (≥0.87) for all of these functional features. Major virulence factors including tdh, trh, type III secretion system-related genes, and four alpha-hemolysin genes (hlyA, hlyB, hlyC, and hlyD) were identified as important differentiating factors in our seafood-clinical virulence model, underscoring the need for further investigation. Significant patterns for AMR genes differing among seafood and clinical samples were revealed from our model and genes conferring to tetracycline, elfamycin, and multidrug (phenicol antibiotic, diaminopyrimidine antibiotic, and fluoroquinolone antibiotic) resistance were identified as the top three key variables. These findings provide crucial insights into the development of effective surveillance and management strategies to address the public health threats associated with V. parahaemolyticus.

Global phylogeography and genomic characterization of Vibrio parahaemolyticus infections in Jilin province, China (2016-2022)

Vibrio parahaemolyticus is a critical foodborne pathogen causing gastroenteritis worldwide. The occurrence of transmission and outbreaks attributed to V. parahaemolyticus has exhibited a notable upward trend during the past two decades. However, comprehensive information on this pathogen in inland cities in China remains scarce. This study shed light on the molecular characteristics, genetic associations, and significant transmission risks through foodborne and fecal-oral routes of 115 V. parahaemolyticus strains obtained from nine inland cities in Jilin Province. Strains were divided into 90 sequence types (STs), with 41 STs that were novel. The predominant sequence type was ST3 (14.78 %, 17/115). The strains exhibited the highest resistance rates to cefazolin and ampicillin. A total of ninety-four antibiotic resistance genes (ARGs) categorized groups based on antibiotic class were identified. The tet(34) (112/115, 97.39 %) and blaCARB (114/115, 99.13 %) genes responsible for tetracycline and β-lactams resistance were present in most isolates. Interestingly, V. parahaemolyticus with the tet(34) gene may not be resistant to tetracycline. Strains with strong biofilm formation ability carry more resistance genes. Atypical virulence genes and virulence genome islands (VPaI) were also identified in the isolated strains. All strains encoded type III secretion system 1 (T3SS1), while 114 isolates encoded type VI secretion system 2 (T6SS2). Notably, T6SS1 was present in 59.55 % of food strains, and pathogenicity genomic islands VPaI-1 to VPaI-5 were found in food-associated isolates. Based on the results of the phylogenetic analysis, clinical strains were closely related within a single cluster, which refers to strains that are more similar to each other than to those outside the group based on specific genetic profiles, while the food isolates were highly diverse. Furthermore, some isolates included in our study indicated potential transmission possibly through sharing of some SNPs between food and clinical-positive V. parahaemolyticus strains from different countries. The study elucidates the genetic characteristics, diversity, and virulence potential of V. parahaemolyticus isolates, thereby enhancing the understanding of the potential risks associated with the cross-border transmission of this pathogen.

Antimicrobial Efficacy of Trifluoro-Anilines Against Vibrio Species

Vibrios are naturally present in marine ecosystems and are commonly allied with live seafood. Vibrio species frequently cause foodborne infections, with Vibrio parahaemolyticus recently becoming a significant contributor to foodborne illness outbreaks. In response, aniline and 68 of its aniline derivatives were studied due to their antibacterial effects targeting V. parahaemolyticus and Vibrio harveyi. Among these, 4-amino-3-chloro-5-nitrobenzotrifluoride (ACNBF) and 2-iodo-4-trifluoromethylaniline (ITFMA) demonstrated both antibacterial and antibiofilm properties. The minimum inhibitory concentrations (MIC) for ACNBF and ITFMA were 100 µg/mL and 50 µg/mL, respectively, against planktonic cells. The active compounds effectively suppressed biofilm formation in a manner dependent on the dosage. Additionally, these trifluoro-anilines significantly reduced virulence factors such as motility, protease activity, hemolysis, and indole production. Both trifluoro-anilines caused noticeable destruction to the membrane of bacterial cells and, at 100 µg/mL, exhibited bactericidal activity against V. parahaemolyticus within 30 min. Toxicity assays using the Caenorhabditis elegans and seed germination models showed that the compounds displayed mild toxicity. As a result, ACNBF and ITFMA inhibited the growth of both planktonic cells and biofilm formation. Furthermore, these active compounds effectively prevented the formation of biofilm on the surfaces of shrimp and squid models, highlighting their potential use in controlling seafood contamination.

Antimicrobial susceptibility and genomic characterization of Vibrio parahaemolyticus isolated from aquatic foods in 15 provinces, China, 2020

Prevalent in marine, estuarine and coastal environments, Vibrio parahaemolyticus is one of the major foodborne pathogens which can cause acute gastroenteritis through consumption of contaminated food. This study encompassed antimicrobial resistance, molecular characteristics and phylogenetic relationships of 163 V. parahaemolyticus isolated from aquatic foods across 15 provinces in China. The isolates showed high resistance rates against ampicillin (90.80 %, 148/163) and cefazolin (72.39 %, 118/163). Only 5 isolates demonstrated multi-drug resistance (MDR) phenotypes. A total of 37 different antibiotic resistance genes (ARGs) in correlation with seven antimicrobial categories were identified. tet(34) and tet(35) were present in all 163 isolates. Other most prevalent ARGs were those conferring resistance to β-lactams, with prevalence rate around 18.40 % (30/163). The virulence genes tdh and trh were found in 17 (10.43 %) and 9 (5.52 %) isolates, respectively. Totally 121 sequence types (STs) were identified through whole genome analysis, among which 60 were novel. The most prevalent sequence type was ST3 (9.20 %, 15/163), which shared the same genotype profile of trh_, tdh+ and blaCARB-22+. Most of the tdh+V. parahaemolyticus isolates was clustered into a distinctive clade by the phylogenetic analysis. Our study showed that the antimicrobial resistance of V. parahaemolyticus in aquatic foods in China was moderate. However, the emerging of MDR isolates implicate strengthened monitoring is needed for the better treatment of human V. parahaemolyticus infections. High genetic diversity and virulence potential of the isolates analyzed in this study help better understanding and evaluating the risk of V. parahaemolyticus posed to public health.

Sources and contamination routes of seafood with human pathogenic Vibrio spp.: A Farm-to-Fork approach

Vibrio spp., known human foodborne pathogens, thrive in freshwater, estuaries, and marine settings, causing vibriosis upon ingestion. The rising global vibriosis cases due to climate change necessitate a deeper understanding of Vibrio epidemiology and human transmission. This review delves into Vibrio contamination in seafood, scrutinizing its sources and pathways. We comprehensively assess the contamination of human-pathogenic Vibrio in the seafood chain, covering raw materials to processed products. A "Farm-to-Fork" approach, aligned with the One Health concept, is essential for grasping the complex nature of Vibrio contamination. Vibrio's widespread presence in natural and farmed aquatic environments establishes them as potential entry points into the seafood chain. Environmental factors, including climate, human activities, and wildlife, influence contamination sources and routes, underscoring the need to understand the origin and transmission of pathogens in raw seafood. Once within the seafood chain, the formation of protective biofilms on various surfaces in production and processing poses significant food safety risks, necessitating proper cleaning and disinfection to prevent microbial residue. In addition, inadequate seafood handling, from inappropriate processing procedures to cross-contamination via pests or seafood handlers, significantly contributes to Vibrio food contamination, thus warranting attention to reduce risks. Information presented here support the imperative for proactive measures, robust research, and interdisciplinary collaboration in order to effectively mitigate the risks posed by human pathogenic Vibrio contamination, safeguarding public health and global food security. This review serves as a crucial resource for researchers, industrials, and policymakers, equipping them with the knowledge to develop biosecurity measures associated with Vibrio-contaminated seafood.

Incidence, virulence genes and antimicrobial resistance of Vibrio parahaemolyticus isolated from seafood

The objective of the study was to establish the incidence, pathogenic factors and antimicrobial resistance of Vibrio parahaemolyticus in seafood from retail shops in Bulgaria. A hundred and eighty samples of sea fish, mussels, oysters, veined rapa whelks, shrimps and squids were included in the study. PCR methods were used to identify V. parahaemolyticus and prove tdh and trh genes. Antimicrobial resistance was established by disc diffusion method, and MAR index was calculated. The results proved the presence of V. parahaemolyticus in 24% (44/180) of the seafood samples. tdh-positive V. parahaemolyticus was not found, while the trh gene was detected in one veined rapa whelk isolate. All isolates were susceptible to Sulfamethoxazole/trimethoprim, Tetracycline, Gentamycin, Amoxicillin-clavulanic acid, Amikacin, Ciprofloxacin, and Levofloxacin. Intermediate resistance was found to Ampicillin (25%; 11/44), Cefepime (16%; 7/44), and Ceftazidime (2%; 1/44). The results showed that 16% (7/44) of the isolates were resistant to Cefepime, 9% (4/44) to Ampicillin, and 5% (2/44) to Ceftazidime. MAR-index values ranged from 0.10 to 0.30. The incidence of pathogenic and multidrug-resistant V. parahaemolyticus strains in seafood offered on the market poses a risk to consumer health.