A new fluorescent oligonucleotide probe for in-situ identification of Microcystis aeruginosa in freshwater

Neglected methane production and toxicity risk in low-frequency ultrasound for controlling harmful algal blooms

Algal blooms are regarded as a significant source of CH₄ emissions. Ultrasound has been gradually employed as a fast and efficient algae removal technology in recent years. However, the changes in water environment and potential ecological effects caused by ultrasonic algae removal are not fully clear. Here, a 40-day microcosm study was performed to simulate the collapse of Microcystis aeruginosa blooms after ultrasonic treatment. The results showed that low-frequency ultrasound at 29.4 kHz for 15 min removed 33.49% of M. aeruginosa and contributed to the destruction of cell structure, but it intensified the leakage of intracellular algal organic matter and microcystins. The accelerated collapse of M. aeruginosa blooms after ultrasonication promoted the rapid formation of anaerobic and reductive methanogenesis conditions, and elevated dissolved organic carbon content. Moreover, the release of labile organics, including tyrosine, tryptophan, protein-like compositions, and aromatic proteins, was facilitated by the collapse of M. aeruginosa blooms after ultrasonic treatment, and they supported the growth of anaerobic fermentation bacteria and hydrogenotrophic Methanobacteriales. This was also demonstrated by the increase in methyl-coenzyme M reductase (mcrA) genes in sonicated algae added treatments at the end of incubation. Finally, the CH₄ production in sonicated algae added treatments was 1.43-fold higher than that in non-sonicated algae added treatments. These observations suggested that ultrasound for algal bloom control potentially increased the toxicity of treated water and its greenhouse gas emissions. This study can provide new insights and guidance to evaluate environmental effects of ultrasonic algae removal.

Identification of Pseudo-nitzschia Cryptic Species Collected in the Gulf of Naples Using Whole-Cell Fluorescent In Situ Hybridization: From Cultured Sample to Field Test

The planktonic diatom genus Pseudo-nitzschia contains several genetically closely related species that can produce domoic acid, a potent neurotoxin known to cause amnesic shellfish poisoning (ASP). An early identification and an adequate monitoring of the potential toxic Pseudo-nitzschia spp. are necessary. However, effective monitoring programs are time consuming due, in some cases, to the cell morphology similarities among species, determined with light microscopy, that can result in insufficient data to give a definitive species and toxins attribution. In this paper, Whole-Cell Fluorescent In Situ Hybridization (WC-FISH) has been evaluated as a powerful tool to detect and enumerate harmful cryptic and/or pseudo-cryptic Pseudo-nitzschia spp. collected in the Gulf of Naples. Fluorescently labelled probes directed against the ribosomal RNA (rRNA) of the 28S large subunit (LSU) were used. In particular, five probes detecting four cryptic species of Pseudo-nitzschia delicatissima complex and one specific for Pseudo-nitzschia multistriata gave good results for the molecular identification of potentially toxic target species in natural samples. Finally, we can state that the WC-FISH method, to identify Pseudo-nitzschia species, is faster and more cost-effective if compared with other rDNA-based methods.

Laboratory growth capacity of an invasive cyanobacterium (Microcystis aeruginosa) on organic substrates from surface waters of permafrost peatlands

Within a global warming trend, invasive cyanobacteria, abundant in tropical and temperate regions, can migrate northward and colonize thermokarst lakes in permafrost-affected territories. For a better understanding of the cyanobacterial proliferation mechanism in those lakes, we performed laboratory growth of typical invasive cyanobacteria, Microcystis aeruginosa, onto various organic-rich solutions representative of permafrost peatlands. Aqueous leachates of lichen, moss and peat were the most favorable substrates for massive growth. The growth in the presence of all organic substrates produced an increase in solution pH by two units and a sizable (30-50%) decrease in the concentration of dissolved organic carbon. The observed increase in the dissolved organic carbon aromaticity degree likely reflected preferential cyanobacterial uptake of aliphatic, optically transparent organic substances. Cyanobacterial growth over a bloom period can create a carbon sink (uptake of 2.5 and 8.3 g C-CO₂ m^-2 d^-1) that can offset the net heterotrophic status of thermokarst lakes in permafrost peatlands, thus switching the lake status from a C source to a C sink. Therefore, predictions of future carbon exchanges with the atmosphere in surface waters of permafrost peatlands require explicit accounting for the possibility of invasive cyanobacterial growth.

Potential applications of CRISPR/Cas for next-generation biomonitoring of harmful algae blooms: A review

Research on harmful algal and cyanobacterial blooms (HABs and CHABs) has risen dramatically due to their increasing global distribution, frequency, and intensity. These blooms jeopardize public health, ecosystem function, sustainability and can have negative economic impacts. Numerous monitoring programs have been established using light microscopy, liquid chromatography coupled to mass spectrometry (LC-MS), ELISA, and spectrophotometry to monitor HABs/CHABs outbreaks. Recently, DNA/RNA-based molecular methods have been integrated into these programs to replace or complement traditional methods through analyzing environmental DNA and RNA (eDNA/eRNA) with techniques such as quantitative polymerase chain reaction (qPCR), fluorescent in situ hybridization (FISH), sandwich hybridization assay (SHA), isothermal amplification methods, and microarrays. These have enabled the detection of rare or cryptic species, enhanced sample throughput, and reduced costs and the need for visual taxonomic expertise. However, these methods have limitations, such as the need for high capital investment in equipment or detection uncertainties, including determining whether organisms are viable. In this review, we discuss the potential of newly developed molecular diagnosis technology based on Clustered Regularly Interspaced Short Palindromic Repeats/Cas proteins (CRISPR/Cas), which utilizes the prokaryotic adaptative immune systems of bacteria and archaea. Cas12 and Cas13-based platforms can detect both DNA and RNA with attomolar sensitivity within an hour. CRISPR/Cas diagnostic is a rapid, inexpensive, specific, and ultrasensitive technology that, with some further development, will provide many new platforms that can be used for HABs/CHABs biomonitoring and research.

A Facile and Sensitive DNA Sensing of Harmful Algal Blooms Based on Graphene Oxide Nanosheets

Gene detection has important applications in biology, biomedical engineering, clinical, environmental, and marine fields. Rapid, sensitive, and selective recognition of specific genes is essential in practical applications. In this study, we describe a facile and sensitive DNA sensing platform for specific and quantitative detection of Heterosigma akashiwo, which is one of the causative agents of red tides. Fast and sensitive detection is achieved by using chemically synthesized graphene oxide (GO) nanosheets. Probe DNA is designed according to the specific DNA fragments of harmful algae and labeled with fluorescent molecules FAM (fluorescein-based dye). GO nanosheet solution is made, in which the strong interaction between FAM-labeled probe and GO nanosheets keeps them in close proximity, facilitating the fluorescence quenching of the fluorophore by GO nanosheets. In the presence of a complementary target DNA, the FAM-labeled DNA probe and the target DNA hybridize and desorb from the surface of GO nanosheets, resulting in restoration of fluorophore fluorescence. The concentration of target DNA fragments is analyzed by the fluorescence intensity at ~ 520 nm with emission wavelength of 480 nm. The sensitive detecting platform achieved stable measurement of 1 pM specific genes from Heterosigma akashiwo. Our GO nanosheet-based DNA-sensing platform performs fast and sensitive detection of trace amount of DNA, and enables quantitative recognition of harmful algae, which has promising applications in real-time monitoring in the marine environment of red tide generative dynamics, allowing effective control, particularly in relation to marine aquaculture.