Estimation of the cortical functional connectivity with the multimodal integration of high-resolution EEG and fMRI data by directed transfer function

Frequency-band specific directed connectivity networks reveal functional disruptions and pathogenic patterns in temporal lobe epilepsy: a MEG study

This study investigates the network mechanisms of temporal lobe epilepsy (TLE) using MEG data, focusing on directed connectivity networks across different frequency bands. Unlike previous studies that primarily localize epileptogenic zones, this research aims to explore whole-brain network differences between left TLE (lTLE), right TLE (rTLE), and healthy controls (HCs). MEG data from 13 lTLE patients, 21 rTLE patients, and 14 HCs were source-reconstructed to 116 brain regions (AAL116). Directed Transfer Function (DTF) was used to construct directed connectivity networks, followed by networks and graph-theoretical analyses. The results indicate that, compared to HCs, TLE subjects exhibited a significant increase in average connectivity strength in the Low Gamma band. The connectivity patterns across frequency bands in TLE patients were found to be unstable. Both HC and TLE subjects demonstrated left hemisphere lateralization. In the mid-to-low frequency bands, TLE subjects showed increases in global clustering coefficient (GCC), global characteristic path length (GCPL), and local efficiency (LE) compared to HCs, which is attributed to enhanced synchronization between local brain regions in TLE subjects.

ADHD detection from EEG signals using GCN based on multi-domain features

Introduction

Attention deficit hyperactivity disorder (ADHD) is a common psychiatric disorder in children during their early school years. While many researchers have explored automated ADHD detection methods, developing accurate, rapid, and reliable approaches remains challenging.

Methods

This study proposes a graph convolutional neural network (GCN)-based ADHD detection framework utilizing multi-domain electroencephalogram (EEG) features. First, time-domain and frequency-domain features are extracted via long short-term memory (LSTM) and convolutional neural network (CNN) models, respectively. Second, a novel functional connectivity matrix is constructed by fusing phase lag index (PLI) and coherence (COH) features to simultaneously capture phase synchrony and signal intensity consistency between brain regions. Finally, a GCN model integrates these time-frequency features with topological patterns from the connectivity matrix for ADHD classification.

Results

Evaluated on two EEG datasets, the proposed method achieved average accuracies of 97.29% and 96.67%, outperforming comparative models (XGBoost, LightGBM, AdaBoost, random forest). Visualization experiments further revealed distinct brain connectivity distributions between ADHD patients and healthy controls.

Discussion

The fused functional connectivity matrix surpasses traditional single-metric approaches in characterizing brain interactions. By synergistically combining time, frequency, and topological features, the GCN framework enables more precise ADHD detection. This method demonstrates potential for assisting neurologists in clinical diagnosis while providing interpretable neurophysiological insights.

Altered Effective Connectivity of the Attentional Network in Temporal Lobe Epilepsy with EEG Data

Existing studies have shown that the attentional function of epilepsy is prone to be impaired. However, the characterization of brain connectivity behind this impairment remains uncertain. This study investigates attention-related brain connectivity in 92 patients with temporal lobe epilepsy and 78 healthy controls using a 32-channel EEG monitor during an attention network test. Compared to controls, patients showed reduced temporal-occipital connectivity in the alerting and orienting networks, but increased frontal-occipital connectivity in the executive network. Additionally, this study showed that patients and healthy individuals exhibited similar network topologies in the alerting and orienting networks, but the executive networks in patients showed altered topology properties, with a larger clustering coefficient in the theta band and a longer characteristic path length in the delta and theta bands. These findings reveal distinct characteristics of attention network connectivity in patients with temporal lobe epilepsy, offering valuable insights into the underlying mechanisms of epilepsy and providing clinical guidance for long-term monitoring and intervention.

Directed connectivity in theta networks supports action-effect integration

The ability to plan and carry out goal-directed behavior presupposes knowledge about the contingencies between movements and their effects. Ideomotor accounts of action control assume that agents integrate action-effect contingencies by creating action-effect bindings, which associate movement patterns with their sensory consequences. However, the neurophysiological underpinnings of action-effect binding are not yet well understood. Given that theta band activity has been linked to information integration, we thus studied action-effect integration in an electrophysiological study with N = 31 healthy individuals with a strong focus on theta band activity. We examined how information between functional neuroanatomical structures is exchanged to enable action planning. We show that theta band activity in a network encompassing the insular cortex (IC), the anterior temporal lobe (ATL), and the inferior frontal cortex (IFC) supports the establishment of action-effect bindings. All regions revealed bi-directional effective connectivities, indicating information transfer between these regions. The IC and ATL create a loop for information integration and the conceptual abstraction of it. The involvement of anterior regions of the IFC, particularly during the acquisition phase of the action-effect, likely reflects episodic control mechanisms in which a past event defines a "template" of what action-effect is to be expected. Taken together, the current findings connect well with major cognitive concepts. Our study suggests a functional relevance of theta band activity in an IC-ATL-IFC network, which in turn implies that basic ideomotor action-effect integration is implemented through theta band activity and effective connectivities between temporo-frontal structures.

Deep source transfer learning for the estimation of internal brain dynamics using scalp EEG

Electroencephalography (EEG) provides high temporal resolution neural data for brain-computer interfacing via noninvasive electrophysiological recording. Estimating the internal brain activity by means of source imaging techniques can further improve the spatial resolution of EEG and enhance the reliability of neural decoding and brain-computer interaction. In this work, we propose a novel EEG data-driven source imaging scheme for precise and efficient estimation of macroscale spatiotemporal brain dynamics across thalamus and cortical regions with deep learning methods. A deep source imaging framework with a convolutional-recurrent neural network is designed to estimate the internal brain dynamics from high-density EEG recordings. Moreover, a brain model including 210 cortical regions and 16 thalamic nuclei is established based on human brain connectome to provide synthetic training data, which manifests intrinsic characteristics of underlying brain dynamics in spontaneous, stimulation-evoked, and pathological states. Transfer learning algorithm is further applied to the trained network to reduce the dynamical differences between synthetic and realistic EEG. Extensive experiments exhibit that the proposed deep-learning method can accurately estimate the spatial and temporal activity of brain sources and achieves superior performance compared to the state-of-the-art approaches. Moreover, the EEG data-driven source imaging framework is effective in the location of seizure onset zone in epilepsy and reconstruction of dynamical thalamocortical interactions during sensory processing of acupuncture stimulation, implying its applicability in brain-computer interfacing for neuroscience research and clinical applications.

Neural mechanisms of adaptive behavior: Dissociating local cortical modulations and interregional communication patterns

Adaptive behavior is based on flexibly managing and integrating perceptual and motor processes, and the reconfiguration thereof. Such adaptive behavior is also relevant during inhibitory control. Although research has demonstrated local activity modulations in theta and alpha frequency bands during behavioral adaptation, the communication of brain regions is insufficiently studied. Examining directed connectivity between brain regions using a machine learning approach, a generally increased activity, but decreased connectivity within a temporo-occipital theta band network was revealed during the reconfiguration of perception-action associations during inhibitory control. Additionally, a fronto-occipital alpha-theta interplay yielded a decrease in directed connectivity during reconfiguration processes, which was associated with lower error rates in behavior. Thus, adaptive behavior relies on both local increases and decreases of activity depending on the frequency band, and concomitant decreases in communication between frontal and sensory cortices. The findings reframe common conceptualizations about how adaptive behavior is supported by neural processes.

Sensorimotor brain-computer interface performance depends on signal-to-noise ratio but not connectivity of the mu rhythm in a multiverse analysis of longitudinal data

Objective.Serving as a channel for communication with locked-in patients or control of prostheses, sensorimotor brain-computer interfaces (BCIs) decode imaginary movements from the recorded activity of the user's brain. However, many individuals remain unable to control the BCI, and the underlying mechanisms are unclear. The user's BCI performance was previously shown to correlate with the resting-state signal-to-noise ratio (SNR) of the mu rhythm and the phase synchronization (PS) of the mu rhythm between sensorimotor areas. Yet, these predictors of performance were primarily evaluated in a single BCI session, while the longitudinal aspect remains rather uninvestigated. In addition, different analysis pipelines were used to estimate PS in source space, potentially hindering the reproducibility of the results.Approach.To systematically address these issues, we performed an extensive validation of the relationship between pre-stimulus SNR, PS, and session-wise BCI performance using a publicly available dataset of 62 human participants performing up to 11 sessions of BCI training. We performed the analysis in sensor space using the surface Laplacian and in source space by combining 24 processing pipelines in a multiverse analysis. This way, we could investigate how robust the observed effects were to the selection of the pipeline.Main results.Our results show that SNR had both between- and within-subject effects on BCI performance for the majority of the pipelines. In contrast, the effect of PS on BCI performance was less robust to the selection of the pipeline and became non-significant after controlling for SNR.Significance.Taken together, our results demonstrate that changes in neuronal connectivity within the sensorimotor system are not critical for learning to control a BCI, and interventions that increase the SNR of the mu rhythm might lead to improvements in the user's BCI performance.

An EEG-based marker of functional connectivity: detection of major depressive disorder

Major depressive disorder (MDD) is a prevalent psychiatric disorder globally. There are many assays for MDD, but rapid and reliable detection remains a pressing challenge. In this study, we present a fusion feature called P-MSWC, as a novel marker to construct brain functional connectivity matrices and utilize the convolutional neural network (CNN) to identify MDD based on electroencephalogram (EEG) signal. Firstly, we combine synchrosqueezed wavelet transform and coherence theory to get synchrosqueezed wavelet coherence. Then, we obtain the fusion feature by incorporating synchrosqueezed wavelet coherence value and phase-locking value, which outperforms conventional functional connectivity markers by comprehensively capturing the original EEG signal's information and demonstrating notable noise-resistance capabilities. Finally, we propose a lightweight CNN model that effectively utilizes the high-dimensional connectivity matrix of the brain, constructed using our novel marker, to enable more accurate and efficient detection of MDD. The proposed method achieves 99.92% accuracy on a single dataset and 97.86% accuracy on a combined dataset. Moreover, comparison experiments have shown that the performance of the proposed method is superior to traditional machine learning methods. Furthermore, visualization experiments reveal differences in the distribution of brain connectivity between MDD patients and healthy subjects, including decreased connectivity in the T7, O1, F8, and C3 channels of the gamma band. The results of the experiments indicate that the fusion feature can be utilized as a new marker for constructing functional brain connectivity, and the combination of deep learning and functional connectivity matrices can provide more help for the detection of MDD.

Hyperscanning literature after two decades of neuroscientific research: A scientometric review

Hyperscanning, a neuroimaging approach introduced in 2002 for simultaneously recording the brain activity of multiple participants, has significantly contributed to our understanding of social interactions. Nevertheless, the existing literature requires systematic organization to advance our knowledge. This study, after two decades of hyperscanning research, aims to identify the primary thematic domains and the most influential documents in the field. We conducted a scientometric analysis to examine co-citation patterns quantitatively, using a sample of 548 documents retrieved from Scopus and their 32,022 cited references. Our analysis revealed ten major thematic domains in hyperscanning research, with the most impactful document authored by Czeszumski and colleagues in 2020. Notably, while hyperscanning was initially developed for functional magnetic resonance imaging (fMRI), our findings indicate a substantial influence of research conducted using electroencephalography (EEG) and functional near-infrared spectroscopy (fNIRS). The introduction of fNIRS and advancements in EEG methods have enabled the implementation of more ecologically valid experiments for investigating social interactions. The study also highlights the need for more research that combines multi-brain neural stimulation with neuroimaging techniques to understand the causal role played by interpersonal neural synchrony in social interactions.

Neural connectivity patterns explain why adolescents perceive the world as moving slow

That younger individuals perceive the world as moving slower than adults is a familiar phenomenon. Yet, it remains an open question why that is. Using event segmentation theory, electroencephalogram (EEG) beamforming and nonlinear causal relationship estimation using artificial neural network methods, we studied neural activity while adolescent and adult participants segmented a movie. We show when participants were instructed to segment a movie into meaningful units, adolescents partitioned incoming information into fewer encapsulated segments or episodes of longer duration than adults. Importantly, directed communication between medial frontal and lower-level perceptual areas and between occipito-temporal regions in specific neural oscillation spectrums explained behavioral differences between groups. Overall, the study reveals that a different organization of directed communication between brain regions and inefficient transmission of information between brain regions are key to understand why younger people perceive the world as moving slow.

Exploring Convolutional Neural Network Architectures for EEG Feature Extraction

The main purpose of this paper is to provide information on how to create a convolutional neural network (CNN) for extracting features from EEG signals. Our task was to understand the primary aspects of creating and fine-tuning CNNs for various application scenarios. We considered the characteristics of EEG signals, coupled with an exploration of various signal processing and data preparation techniques. These techniques include noise reduction, filtering, encoding, decoding, and dimension reduction, among others. In addition, we conduct an in-depth analysis of well-known CNN architectures, categorizing them into four distinct groups: standard implementation, recurrent convolutional, decoder architecture, and combined architecture. This paper further offers a comprehensive evaluation of these architectures, covering accuracy metrics, hyperparameters, and an appendix that contains a table outlining the parameters of commonly used CNN architectures for feature extraction from EEG signals.

A Generalized Cortico-Muscular-Cortical Network to Evaluate the Effects of Three-Week Brain Stimulation

OBJECTIVE

Post-stroke transcranial magnetic stimulation (TMS) has gradually become a brain intervention to assist patients in the recovery of motor function. The long lasting regulatory of TMS may involve the coupling changes between cortex and muscles. However, the effects of multi-day TMS on motor recovery after stroke is unclear.

METHODS

This study proposed to quantify the effects of three-week TMS on brain activity and muscles movement performance based on a generalized cortico-muscular-cortical network (gCMCN). The gCMCN-based features were further extracted and combined with the partial least squares (PLS) method to predict the Fugl-Meyer of upper extremity (FMUE) in stroke patients, thereby establishing an objective rehabilitation method that can evaluate the positive effects of continuous TMS on motor function.

RESULTS

We found that the improvement of motor function after three-week TMS was significantly correlated with the complexity trend of information interaction between hemispheres and the intensity of corticomuscular coupling. In addition, the fitting coefficient ([Formula: see text]) for predicted and actual FMUE before and after TMS were 0.856 and 0.963, respectively, suggesting that the gCMCN-based measurement may be a promising method for evaluating the therapeutic effect of TMS.

CONCLUSION

From the perspective of a novel brain-muscles network with dynamic contraction as the entry point, this work quantified TMS-induced connectivity differences while evaluating the potential efficacy of multi-day TMS.

SIGNIFICANCE

It provides a unique insight for the further application of intervention therapy in the field of brain diseases.

Two is better? combining EEG and fMRI for BCI and neurofeedback: a systematic review

Electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) are two commonly used non-invasive techniques for measuring brain activity in neuroscience and brain-computer interfaces (BCI).Objective. In this review, we focus on the use of EEG and fMRI in neurofeedback (NF) and discuss the challenges of combining the two modalities to improve understanding of brain activity and achieve more effective clinical outcomes. Advanced technologies have been developed to simultaneously record EEG and fMRI signals to provide a better understanding of the relationship between the two modalities. However, the complexity of brain processes and the heterogeneous nature of EEG and fMRI present challenges in extracting useful information from the combined data.Approach. We will survey existing EEG-fMRI combinations and recent studies that exploit EEG-fMRI in NF, highlighting the experimental and technical challenges.Main results. We made a classification of the different combination of EEG-fMRI for NF, we provide a review of multimodal analysis methods for EEG-fMRI features. We also survey the current state of research on EEG-fMRI in the different existing NF paradigms. Finally, we also identify some of the remaining challenges in this field.Significance. By exploring EEG-fMRI combinations in NF, we are advancing our knowledge of brain function and its applications in clinical settings. As such, this review serves as a valuable resource for researchers, clinicians, and engineers working in the field of neural engineering and rehabilitation, highlighting the promising future of EEG-fMRI-based NF.

The power of multivariate approach in identifying EEG correlates of interlimb coupling

Interlimb coupling refers to the interaction between movements of one limb and movements of other limbs. Understanding mechanisms underlying this effect is important to real life because it reflects the level of interdependence between the limbs that plays a role in daily activities including tool use, cooking, or playing musical instruments. Interlimb coupling involves multiple brain regions working together, including coordination of neural activity in sensory and motor regions across the two hemispheres. Traditional neuroscience research took a univariate approach to identify neural features that correspond to behavioural coupling measures. Yet, this approach reduces the complexity of the neural activity during interlimb tasks to one value. In this brief research report, we argue that identifying neural correlates of interlimb coupling would benefit from a multivariate approach in which full patterns from multiple sources are used to predict behavioural coupling. We demonstrate the feasibility of this approach in an exploratory EEG study where participants (n = 10) completed 240 trials of a well-established drawing paradigm that involves interlimb coupling. Using artificial neural network (ANN), we show that multivariate representation of the EEG signal significantly captures the interlimb coupling during bimanual drawing whereas univariate analyses failed to identify such correlates. Our findings demonstrate that analysing distributed patterns of multiple EEG channels is more sensitive than single-value techniques in uncovering subtle differences between multiple neural signals. Using such techniques can improve identification of neural correlates of complex motor behaviours.

Analysis of corticomuscular-cortical functional network based on time-delayed maximal information spectral coefficient

Objective. The study of brain networks has become an influential tool for investigating post-stroke brain function. However, studies on the dynamics of cortical networks associated with muscle activity are limited. This is crucial for elucidating the altered coordination patterns in the post-stroke motor control system.Approach. In this study, we introduced the time-delayed maximal information spectral coefficient (TDMISC) method to assess the local frequency band characteristics (alpha, beta, and gamma bands) of functional corticomuscular coupling (FCMC) and cortico-cortical network parameters. We validated the effectiveness of TDMISC using a unidirectionally coupled Hénon maps model and a neural mass model.Main result. A grip task with 25% of maximum voluntary contraction was designed, and simulation results demonstrated that TDMISC accurately characterizes signals' local frequency band and directional properties. In the gamma band, the affected side showed significantly strong FCMC in the ascending direction. However, in the beta band, the affected side exhibited significantly weak FCMC in all directions. For the cortico-cortical network parameters, the affected side showed a lower clustering coefficient than the unaffected side in all frequency bands. Additionally, the affected side exhibited a longer shortest path length than the unaffected side in all frequency bands. In all frequency bands, the unaffected motor cortex in the stroke group exerted inhibitory effects on the affected motor cortex, the parietal associative areas, and the somatosensory cortices.Significance. These results provide meaningful insights into neural mechanisms underlying motor dysfunction.

A latent state space model for estimating brain dynamics from electroencephalogram (EEG) data

Modern neuroimaging technologies have substantially advanced the measurement of brain activity. Electroencephalogram (EEG) as a noninvasive neuroimaging technique measures changes in electrical voltage on the scalp induced by brain cortical activity. With its high temporal resolution, EEG has emerged as an increasingly useful tool to study brain connectivity. Challenges with modeling EEG signals of complex brain activity include interactions among unknown sources, low signal-to-noise ratio, and substantial between-subject heterogeneity. In this work, we propose a state space model that jointly analyzes multichannel EEG signals and learns dynamics of different sources corresponding to brain cortical activity. Our model borrows strength from spatially correlated measurements and uses low-dimensional latent states to explain all observed channels. The model can account for patient heterogeneity and quantify the effect of a subject's covariates on the latent space. The EM algorithm, Kalman filtering, and bootstrap resampling are used to fit the state space model and provide comparisons between patient diagnostic groups. We apply the developed approach to a case-control study of alcoholism and reveal significant attenuation of brain activity in response to visual stimuli in alcoholic subjects compared to healthy controls.

Identifying oscillatory brain networks with hidden Gaussian graphical spectral models of MEEG

Identifying the functional networks underpinning indirectly observed processes poses an inverse problem for neurosciences or other fields. A solution of such inverse problems estimates as a first step the activity emerging within functional networks from EEG or MEG data. These EEG or MEG estimates are a direct reflection of functional brain network activity with a temporal resolution that no other in vivo neuroimage may provide. A second step estimating functional connectivity from such activity pseudodata unveil the oscillatory brain networks that strongly correlate with all cognition and behavior. Simulations of such MEG or EEG inverse problem also reveal estimation errors of the functional connectivity determined by any of the state-of-the-art inverse solutions. We disclose a significant cause of estimation errors originating from misspecification of the functional network model incorporated into either inverse solution steps. We introduce the Bayesian identification of a Hidden Gaussian Graphical Spectral (HIGGS) model specifying such oscillatory brain networks model. In human EEG alpha rhythm simulations, the estimation errors measured as ROC performance do not surpass 2% in our HIGGS inverse solution and reach 20% in state-of-the-art methods. Macaque simultaneous EEG/ECoG recordings provide experimental confirmation for our results with 1/3 times larger congruence according to Riemannian distances than state-of-the-art methods.

Effects of indoor exposure to low level toluene on neural network alterations during working memory encoding

OBJECTIVE

While high concentrations of toluene are known to affect multiple human organ systems, research concerning the influence of immediate, short-term exposure to toluene indoors and at low concentrations is scarce. Here, we studied effects of indoor toluene exposure on neural network alterations during working memory (WM) encoding.

METHODS

A total of 23 healthy college students were recruited. All participants were situated in a closed environmental chamber with a full fresh air system. Each participant was subjected to four exposure experiments with different toluene concentrations (0, 17.5, 35, and 70 ppb, named Group A, B, C and D, respectively), with at least one week between each experiment. WM Behavioral and 19-channel electroencephalogram (EEG) recordings in a pre-set environmental chamber were conducted simultaneously during each toluene exposure experiment. Neural networks relevant to WM encoding were visualized analyzing the obtained data.

RESULTS

1. No significant difference in WM behavioral performance among the four groups was found. However, a significant increase in whole brain neural network functional connectivity was noted, especially in the frontal region. 2. An outflow directional transfer function (DTF_outflow) revealed higher frontal region values among Group D (the 70 ppb group) as compared to Group A, B and C (the0, 17.5 ppb and 35 ppb groups, respectively), although no differences in frontal region DTF_inflow values among the four groups were noted. 3. The DTF_FZ-F7, DTF_FZ-T5, DTF_FZ-P4, DTF_FZ-P3, DTF_FP2-O2, DTF_P3-T4, DTF_P3-F4, DTF_P4-CZ and DTF_P4-T4 values of Group D were found to be higher as compared to those of Group A and B. Furthermore, DTF_FZ-F7 and DTF_P4-T4 values of Group C were higher as compared to those of Group A. The DTF_FZ-F7 values of Group D were higher as compared to those of the Group C.

CONCLUSION

Short-term toluene exposure significantly influences neural networks during cognitive processes such as WM encoding, even at low concentration.

Connectivity Analysis in EEG Data: A Tutorial Review of the State of the Art and Emerging Trends

Understanding how different areas of the human brain communicate with each other is a crucial issue in neuroscience. The concepts of structural, functional and effective connectivity have been widely exploited to describe the human connectome, consisting of brain networks, their structural connections and functional interactions. Despite high-spatial-resolution imaging techniques such as functional magnetic resonance imaging (fMRI) being widely used to map this complex network of multiple interactions, electroencephalographic (EEG) recordings claim high temporal resolution and are thus perfectly suitable to describe either spatially distributed and temporally dynamic patterns of neural activation and connectivity. In this work, we provide a technical account and a categorization of the most-used data-driven approaches to assess brain-functional connectivity, intended as the study of the statistical dependencies between the recorded EEG signals. Different pairwise and multivariate, as well as directed and non-directed connectivity metrics are discussed with a pros-cons approach, in the time, frequency, and information-theoretic domains. The establishment of conceptual and mathematical relationships between metrics from these three frameworks, and the discussion of novel methodological approaches, will allow the reader to go deep into the problem of inferring functional connectivity in complex networks. Furthermore, emerging trends for the description of extended forms of connectivity (e.g., high-order interactions) are also discussed, along with graph-theory tools exploring the topological properties of the network of connections provided by the proposed metrics. Applications to EEG data are reviewed. In addition, the importance of source localization, and the impacts of signal acquisition and pre-processing techniques (e.g., filtering, source localization, and artifact rejection) on the connectivity estimates are recognized and discussed. By going through this review, the reader could delve deeply into the entire process of EEG pre-processing and analysis for the study of brain functional connectivity and learning, thereby exploiting novel methodologies and approaches to the problem of inferring connectivity within complex networks.

Functional Source Separation-Identified Epileptic Network: Analysis Pipeline

This proof-of-concept (PoC) study presents a pipeline made by two blocks: 1. the identification of the network that generates interictal epileptic activity; and 2. the study of the time course of the electrical activity that it generates, called neurodynamics, and the study of its functional connectivity to the other parts of the brain. Network identification is achieved with the Functional Source Separation (FSS) algorithm applied to electroencephalographic (EEG) recordings, the neurodynamics quantified through signal complexity with the Higuchi Fractal Dimension (HFD), and functional connectivity with the Directed Transfer Function (DTF). This PoC is enhanced by the data collected before and after neuromodulation via transcranial Direct Current Stimulation (tDCS, both Real and Sham) in a single drug-resistant epileptic person. We observed that the signal complexity of the epileptogenic network, reduced in the pre-Real, pre-Sham, and post-Sham, reached the level of the rest of the brain post-Real tDCS. DTF changes post-Real tDCS were maintained after one month. The proposed approach can represent a valuable tool to enhance understanding of the relationship between brain neurodynamics characteristics, the effects of non-invasive brain stimulation, and epileptic symptoms.

Investigating the discrimination of linear and nonlinear effective connectivity patterns of EEG signals in children with Attention-Deficit/Hyperactivity Disorder and Typically Developing children

BACKGROUND

Analysis of effective connectivity among brain regions is an important key to decipher the mechanisms underlying neural disorders such as Attention Deficit Hyperactivity Disorder (ADHD). We previously introduced a new method, called nCREANN (nonlinear Causal Relationship Estimation by Artificial Neural Network), for estimating linear and nonlinear components of effective connectivity, and provided novel findings about effective connectivity of EEG signals of children with autism. Using the nCREANN method in the present study, we assessed effective connectivity patterns of ADHD children based on their EEG signals recorded during a visual attention task, and compared them with the aged-matched Typically Developing (TD) subjects.

METHOD

In addition to the nCREANN method for estimating linear and nonlinear aspects of effective connectivity, the direct Directed Transfer Function (dDTF) was utilized to extract the spectral information of connectivity patterns.

RESULTS

The dDTF results did not suggest a specific frequency band for distinguishing between the two groups, and different patterns of effective connectivity were observed in all bands. Both nCREANN and dDTF methods showed decreased connectivity between temporal/frontal and temporal/occipital regions, and increased connection between frontal/parietal regions in ADHDs than TDs. Furthermore, the nCREANN results showed more left-lateralized connections in ADHDs compared to the symmetric bilateral inter-hemispheric interactions in TDs. In addition, by fusion of linear and nonlinear connectivity measures of nCREANN method, we achieved an accuracy of 99% in classification of the two groups.

CONCLUSION

These findings emphasize the capability of nCREANN method to investigate the brain functioning of neural disorders and its strength in preciously distinguish between healthy and disordered subjects.

Spatial-temporal graph convolutional network for Alzheimer classification based on brain functional connectivity imaging of electroencephalogram

Functional connectivity of the human brain, representing statistical dependence of information flow between cortical regions, significantly contributes to the study of the intrinsic brain network and its functional mechanism. To fully explore its potential in the early diagnosis of Alzheimer's disease (AD) using electroencephalogram (EEG) recordings, this article introduces a novel dynamical spatial-temporal graph convolutional neural network (ST-GCN) for better classification performance. Different from existing studies that are based on either topological brain function characteristics or temporal features of EEG, the proposed ST-GCN considers both the adjacency matrix of functional connectivity from multiple EEG channels and corresponding dynamics of signal EEG channel simultaneously. Different from the traditional graph convolutional neural networks, the proposed ST-GCN makes full use of the constrained spatial topology of functional connectivity and the discriminative dynamic temporal information represented by the 1D convolution. We conducted extensive experiments on the clinical EEG data set of AD patients and Healthy Controls. The results demonstrate that the proposed method achieves better classification performance (92.3%) than the state-of-the-art methods. This approach can not only help diagnose AD but also better understand the effect of normal ageing on brain network characteristics before we can accurately diagnose the condition based on resting-state EEG.

Closed-Loop Construction and Analysis of Cortico-Muscular-Cortical Functional Network After Stroke

Brain networks allow a topological understanding into the pathophysiology of stroke-induced motor deficits, and have been an influential tool for investigating brain functions. Unfortunately, currently applied methods generally lack in the recognition of the dynamic changes in the cortical networks related to muscle activity, which is crucial to clarify the alterations of the cooperative working patterns in the motor control system after stroke. In this study, we integrate corticomuscular and intermuscular interactions to cortico-cortical network and propose a novel closed-loop construction of cortico-muscular-cortical functional network, named closed-loop network (CLN). Directional characteristic in terms of differentiating causal interactions is endowed on basis of the CLN framework, further expanding the definition of functional connectivity (FC) and effective connectivity (EC) dedicated to CLN. Next, CLN is applied to stroke patients to reveal the underlying after-effects mechanism of low frequency repetitive transcranial magnetic stimulation (rTMS) induced alterations of cortical physiologic functions during movement. Results show that the short-term modulation of rTMS is reflected in the enhancement of information interaction within the interhemispheric primary motor regions and inhibition of the coupling between motor cortex and effector muscles. CLN provides a new perspective for the study of motor-related cortical networks with muscle activities involvement instead of being restricted to brain network analysis of behaviors.

Effective connectivity in cortical networks during deception: A lie detection study using EEG

Previous studies have identified activated regions associated with deceptive tasks and most of them utilized time, frequency, or temporal features to identify deceptive responses. However, when deception behaviors occur, the functional connectivity pattern and the communication between different brain areas remain largely unclear. In this study, we explored the most important information flows between different brain cortices during deception. First, we employed the guilty knowledge test protocol and recorded on 64 electrodes electroencephalogram (EEG) signals from 30 subjects (15 guilty and 15 innocent). EEG source estimation was then performed to compute the cortical activities on the 24 regions of interest (ROIs). Next, effective connectivity was calculated by partial directed coherence (PDC) analysis applied to the cortical signals. Furthermore, based on the graph-theoretical analysis, the network parameters with significant differences were extracted as features to identify two groups of subjects. In addition, the ROIs frequently involved in the above network parameters were selected, and based on the difference in the group mean of PDC values of all the edges connected with the selected ROIs, we presented the strongest information flows (MIIF) in the guilty group relative to the innocent group. Experimental results first show that the optimal classification features are mainly in-degree and out-degree measures of the ROI and the high classification accuracy for four bands demonstrated that the proposed method is suitable for lie detection. In addition, the frontoparietal network was found to be most prominent among all the MIIFs in four bands. Finally, combining the neurophysiology signification of four frequency bands, respectively, we analyzed the roles of all the important information flows to uncover the underlying cognitive processes and mechanisms used in deception.

A Feature Extraction Algorithm of Brain Network of Motor Imagination Based on a Directed Transfer Function

Aiming at the feature extraction of left- and right-hand movement imagination EEG signals, this paper proposes a multichannel correlation analysis method and employs the Directed Transfer Function (DTF) to identify the connectivity between different channels of EEG signals, construct a brain network, and extract the characteristics of the network information flow. Since the network information flow identified by DTF can also reflect indirect connectivity of the EEG signal networks, the newly extracted DTF features are incorporated into the traditional AR model parameter features and extend the scope of feature sets. Classifications are carried out through the Support Vector Machine (SVM). The classification results show the enlarged feature set can significantly improve the classification accuracy of the left- and right-hand motor imagery EEG signals compared to the traditional AR feature set. Finally, the EEG signals of 2 channels, 10 channels, and 32 channels were selected for comparing their different effects of classifications. The classification results showed that the multichannel analysis method was more effective. Compared with the parameter features of the traditional AR model, the network information flow features extracted by the DTF method also achieve a higher classification effect, which verifies the effectiveness of the multichannel correlation analysis method.

L1-norm based time-varying brain neural network and its application to dynamic analysis for motor imagery

OBJECTIVE

EEG-based motor imagery (MI) brain-computer interface offers a promising way to improve the efficiency of motor rehabilitation and motor skill learning. In recent years, the power of dynamic network analysis for MI classification has been proved. In fact, its usability mainly depends on the accurate estimation of brain connection. However, traditional dynamic network estimation strategies such as adaptive directed transfer function (ADTF) are designed in the L2-norm. Usually, they estimate a series of pseudo connections caused by outliers, which results in biased features and further limits its online application. Thus, how to accurately infer dynamic causal relationship under outlier influence is urgent.

APPROACH

In this work, we proposed a novel ADTF, which solves the dynamic system in the L1-norm space (L1-ADTF), so as to restrict the outlier influence. To enhance its convergence, we designed an iteration strategy with the alternating direction method of multipliers (ADMM), which could be used for the solution of the dynamic state-space model restricted in the L1-norm space. Furthermore, we compared L1-ADTF to traditional ADTF and its dual extension across both simulation and real EEG experiments.

MAIN RESULTS

A quantitative comparison between L1-ADTF and other ADTFs in simulation studies demonstrates that fewer bias errors and more desirable dynamic state transformation patterns can be captured by the L1-ADTF. Application to real MI EEG datasets seriously noised by ocular artifacts also reveals the efficiency of the proposed L1-ADTF approach to extract the time-varying brain neural network patterns, even when more complex noises are involved.

SIGNIFICANCE

The L1-ADTF may not only be capable of tracking time-varying brain network state drifts robustly but may also be useful in solving a wide range of dynamic systems such as trajectory tracking problems and dynamic neural networks.

Brain functional and effective connectivity based on electroencephalography recordings: A review

Functional connectivity and effective connectivity of the human brain, representing statistical dependence and directed information flow between cortical regions, significantly contribute to the study of the intrinsic brain network and its functional mechanism. Many recent studies on electroencephalography (EEG) have been focusing on modeling and estimating brain connectivity due to increasing evidence that it can help better understand various brain neurological conditions. However, there is a lack of a comprehensive updated review on studies of EEG-based brain connectivity, particularly on visualization options and associated machine learning applications, aiming to translate those techniques into useful clinical tools. This article reviews EEG-based functional and effective connectivity studies undertaken over the last few years, in terms of estimation, visualization, and applications associated with machine learning classifiers. Methods are explored and discussed from various dimensions, such as either linear or nonlinear, parametric or nonparametric, time-based, and frequency-based or time-frequency-based. Then it is followed by a novel review of brain connectivity visualization methods, grouped by Heat Map, data statistics, and Head Map, aiming to explore the variation of connectivity across different brain regions. Finally, the current challenges of related research and a roadmap for future related research are presented.

Alterations in Neural Networks During Working Memory Encoding Related to Cognitive Impairment in Temporal Lobe Epilepsy

Objective: The aim of the current study was to investigate the alterations in the neural networks of patients with temporal lobe epilepsy (TLE) during working memory (WM) encoding.

Methods: Patients with TLE (n = 52) and healthy volunteers (n = 35) completed a WM task, during which 34-channel electroencephalogram signals were recorded. The neural networks during WM encoding were calculated in TLE patients with (TLE-WM) and without (TLE-N) WM deficits.

Results: Functional connectivity strength decreased, and the theta network was altered in the TLE-WM group, although no significant differences in clinical features were observed between the TLE-N and TLE-WM groups.

Conclusions: Not all patients with TLE present with cognitive impairments and alterations in the theta network were identified in TLE patients with functional cognitive deficits.

Significance: The theta network may represent a sensitive measure of cognitive impairment and could predict cognitive outcomes among patients with TLE.

A Long Short-Term Memory Network for Sparse Spatiotemporal EEG Source Imaging

EEG inverse problem is underdetermined, which poses a long standing challenge in Neuroimaging. The combination of source-imaging and analysis of cortical directional networks enables us to noninvasively explore the underlying neural processes. However, existing EEG source imaging approaches mainly focus on performing the direct inverse operation for source estimation, which will be inevitably influenced by noise and the strategy used to find the inverse solution. Here, we develop a new source imaging technique, Deep Brain Neural Network (DeepBraiNNet), for robust sparse spatiotemporal EEG source estimation. In DeepBraiNNet, considering that Recurrent Neural Network (RNN) are usually "deep" in temporal dimension and thus suitable for time sequence modelling, the RNN with Long Short-Term Memory (LSTM) is utilized to approximate the inverse operation for the lead field matrix instead of performing the direct inverse operation, which avoids the possible effect of the direct inverse operation on the underdetermined lead field matrix prone to be influenced by noise. Simulations on various source patterns and noise conditions confirmed that the proposed approach could actually recover the spatiotemporal sources well, outperforming existing state of-the-art methods. DeepBraiNNet also estimated sparse MI related activation patterns when it was applied to a real Motor Imagery dataset, consistent with other findings based on EEG and fMRI. Based on the spatiotemporal sources estimated from DeepBraiNNet, we constructed MI related cortical neural networks, which clearly exhibited strong contralateral network patterns for the two MI tasks. Consequently, DeepBraiNNet may provide an alternative way different from the conventional approaches for spatiotemporal EEG source imaging.

A Novel Method to Assess Motor Cortex Connectivity and Event Related Desynchronization Based on Mass Models

Knowledge of motor cortex connectivity is of great value in cognitive neuroscience, in order to provide a better understanding of motor organization and its alterations in pathological conditions. Traditional methods provide connectivity estimations which may vary depending on the task. This work aims to propose a new method for motor connectivity assessment based on the hypothesis of a task-independent connectivity network, assuming nonlinear behavior. The model considers six cortical regions of interest (ROIs) involved in hand movement. The dynamics of each region is simulated using a neural mass model, which reproduces the oscillatory activity through the interaction among four neural populations. Parameters of the model have been assigned to simulate both power spectral densities and coherences of a patient with left-hemisphere stroke during resting condition, movement of the affected, and movement of the unaffected hand. The presented model can simulate the three conditions using a single set of connectivity parameters, assuming that only inputs to the ROIs change from one condition to the other. The proposed procedure represents an innovative method to assess a brain circuit, which does not rely on a task-dependent connectivity network and allows brain rhythms and desynchronization to be assessed on a quantitative basis.

The diagnosis of amnestic mild cognitive impairment by combining the characteristics of brain functional network and support vector machine classifier

BACKGROUND

Amnestic mild cognitive impairment (aMCI) is an essential stage of early detection and potential intervention for Alzheimer's disease (AD). Patients with aMCI exhibit partially abnormal functional brain connectivity and it is suggested that these features may represent a new diagnostic marker of early AD.

NEW METHOD

In this paper, we constructed two brain network models, a phase synchronization index (PSI) undirected network and a directed transfer function (DTF) directed network, to evaluate the cognitive function in patients with aMCI. We then built SVM classification models using the network clustering coefficient, global efficiency and average node degree as features to distinguish between aMCI patients and controls.

RESULTS

Our results reveal a classification accuracy and AUC of 66.6 ± 1.7% and 0.7475 and 80.0 ± 2.2% and 0.7825, respectively, for the two network models (PSI and DTF). As the directed network model performed better than the undirected model, we introduced an improved graph theory feature, efficiency density, which resulted in an increased classification accuracy and AUC value 86.6 ± 2.6% and 0.8295, respectively.

COMPARISON WITH EXISTING METHODS

The analysis of network models and the directionality of information flow is suitable for analysis of nonlinear EEG signals for assessment of the functional state of the brain. Compared with traditional network features, our proposed improved features more comprehensively evaluate transmission efficiency and density of the brain.

CONCLUSION

In this study, we demonstrate that an improved efficiency density feature is helpful for enhancing classification the accuracy of aMCI. Moreover, directed brain network models exhibit better classification for aMCI diagnosis than undirected networks.

Pathway-specific cortico-muscular coherence in proximal-to-distal compensation during fine motor control of finger extension after stroke

Objective.Proximal-to-distal compensation is commonly observed in the upper extremity (UE) after a stroke, mainly due to the impaired fine motor control in hand joints. However, little is known about its related neural reorganization. This study investigated the pathway-specific corticomuscular interaction in proximal-to-distal UE compensation during fine motor control of finger extension post-stroke by directed corticomuscular coherence (dCMC).Approach.We recruited 14 chronic stroke participants and 11 unimpaired controls. Electroencephalogram (EEG) from the sensorimotor area was concurrently recorded with electromyography (EMG) from extensor digitorum (ED), flexor digitorum (FD), triceps brachii (TRI) and biceps brachii (BIC) muscles in both sides of the stroke participants and in the dominant (right) side of the controls during the unilateral isometric finger extension at 20% maximal voluntary contractions. The dCMC was analyzed in descending (EEG → EMG) and ascending pathways (EMG → EEG) via the directed coherence. It was also analyzed in stable (segments with higher EMG stability) and less-stable periods (segments with lower EMG stability) subdivided from the whole movement period to investigate the fine motor control. Finally, the corticomuscular conduction time was estimated by dCMC phase delay.Main results.The affected limb had significantly lower descending dCMC in distal UE (ED and FD) than BIC (P< 0.05). It showed the descending dominance (significantly higher descending dCMC than the ascending,P< 0.05) in proximal UE (BIC and TRI) rather than the distal UE as in the controls. In the less-stable period, the affected limb had significantly lower EMG stability but higher ascending dCMC (P< 0.05) in distal UE than the controls. Furthermore, significantly prolonged descending conduction time (∼38.8 ms) was found in ED in the affected limb than the unaffected (∼26.94 ms) and control limbs (∼25.74 ms) (P< 0.05).Significance.The proximal-to-distal UE compensation in fine motor control post-stroke exhibited altered descending dominance from the distal to proximal UE, increased ascending feedbacks from the distal UE for fine motor control, and prolonged descending conduction time in the agonist muscle.

Neurofeedback Training of the Control Network Improves Children's Performance with an SSVEP-based BCI

In the past 20 years, neural engineering has made unprecedented progress in the interpretation of brain information (e.g., brain-computer interfaces) and in neuromodulation (e.g., electromagnetic stimulation and neurofeedback). However, there has been little research aiming to improve the performance of brain-computer interfaces (BCIs) using neuromodulation. The present study presents a novel design for a neurofeedback training (NFT) method to improve the operation of a steady-state visual evoked potential (SSVEP)-based BCI and further explores its underlying mechanisms. The use of NFT to upregulate alpha-band power in the user's parietal lobe is presented in this study as a new neuromodulation method to improve SSVEP-based BCI in this study. After users completed this NFT intervention, the signal-to-noise ratio (SNR), accuracy, and information transfer rate (ITR) of the SSVEP-based BCI were increased by 5.8%, 4.7%, and 15.6%, respectively. However, no improvement was observed in the control group in which the subjects did not participate in NFT. Moreover, a general reinforcement of the information flow from the parietal lobe to the occipital lobe was observed. Evidence from a network analysis and an attention test further indicates that NFT improves attention by developing the control capacity of the parietal lobe and then enhances the above SSVEP indicators. Upregulating the amplitude of parietal alpha oscillations using NFT significantly improves the SSVEP-based BCI performance by modulating the control network. The study validates an effective neuromodulation method and possibly contributes to explaining the function of the parietal lobe in the control network.

Information transmission in mPFC-BLA network during exploratory behavior in the open field

Exploratory behavior plays a fundamental role in motivation, learning, and well-being of organisms. The open field test (OFT) is a classic method to investigate the exploratory behavior in rodents, also a widely adopted and pharmacologically validated procedure for evaluating anxiety and depression. Several lines of evidence have shown that medial prefrontal cortex (mPFC) and basolateral amygdala (BLA) play crucial roles in anxiety-like or depression-like exploratory behavior. However, the dynamic characterization of the mPFC-BLA network in exploratory behavior is less well understood. Therefore, this study aimed to investigate the information transmission mechanism in the mPFC-BLA network during exploratory behavior. Local field potentials (LFPs) from mPFC and BLA were simultaneously recorded while the rats performed the OFT. Directed transfer function (DTF), which was derived from Granger causal connectivity analysis, was applied to measure the functional connectivity among LFPs. Information flow (IF) was calculated to explore the dynamics of information transmission in the mPFC-BLA network. Our results revealed that, for both mPFC and BLA, the theta-band functional connectivity in periphery was significantly higher than that in center of the open field. The IF from BLA to mPFC in the open field task was significantly higher than that from mPFC to BLA. These results suggest that the functional connectivity and IF in the mPFC-BLA network are related to the exploratory behavior, and information transmission from BLA to mPFC could be predominant for exploratory behavior.

Transcranial Focused Ultrasound Enhances Sensory Discrimination Capability through Somatosensory Cortical Excitation

Low-intensity transcranial focused ultrasound (tFUS) has emerged as a non-invasive brain neuromodulation tool with high spatial specificity. Previous studies attributed tFUS-enhanced sensory performance to the ultrasound-induced inhibitory neural effects. However, to date there is no direct evidence validating the neural mechanism underlying ultrasound-mediated somatosensory enhancement. In this study, healthy human subjects (N = 9) were asked to perform tactile vibration frequency discrimination tasks while tFUS was directed onto the primary somatosensory cortex. During this task, we simultaneously recorded 64-channel electroencephalography (EEG) signals and investigated the brain responses at both EEG sensors and source domains by means of electrophysiological source imaging (ESI). The behavioral results indicated that the subjects' discrimination ability was improved by tFUS with an increased percentage of correct responses. EEG and ESI results revealed that tFUS neuromodulation was able to improve sensory discrimination capability through excitatory effects at the targeted sensory cortex.

The effect of fatigue on brain connectivity networks

In the fatigue state, the neural response characteristics of the brain might be different from those in the normal state. Brain functional connectivity analysis is an effective tool for distinguishing between different brain states. For example, comparative studies on the brain functional connectivity have the potential to reveal the functional differences in different mental states. The purpose of this study was to explore the relationship between human mental states and brain control abilities by analyzing the effect of fatigue on the brain response connectivity. In particular, the phase‐scrambling method was used to generate images with two noise levels, while the N‐back working memory task was used to induce the fatigue state in subjects. The paradigm of rapid serial visual presentation (RSVP) was used to present visual stimuli. The analysis of brain connections in the normal and fatigue states was conducted using the open‐source eConnectome toolbox. The results demonstrated that the control areas of neural responses were mainly distributed in the parietal region in both the normal and fatigue states. Compared to the normal state, the brain connectivity power in the parietal region was significantly weakened under the fatigue state, which indicates that the control ability of the brain is reduced in the fatigue state.

Time-varying effective EEG source connectivity: the optimization of model parameters

Adaptive estimation methods based on general Kalman filter are powerful tools to investigate brain networks dynamics given the non-stationary nature of neural signals. These methods rely on two parameters, the model order p and adaptation constant c, which determine the resolution and smoothness of the time-varying multivariate autoregressive estimates. A sub-optimal filtering may present consistent biases in the frequency domain and temporal distortions, leading to fallacious interpretations. Thus, the performance of these methods heavily depends on the accurate choice of these two parameters in the filter design. In this work, we sought to define an objective criterion for the optimal choice of these parameters. Since residual- and information-based criteria are not guaranteed to reach an absolute minimum, we propose to study the partial derivatives of these functions to guide the choice of p and c. To validate the performance of our method, we used a dataset of human visual evoked potentials during face perception where the generation and propagation of information in the brain is well understood and a set of simulated data where the ground truth is available.

Discovering dynamic task-modulated functional networks with specific spectral modes using MEG

Efficient neuronal communication between brain regions through oscillatory synchronization at certain frequencies is necessary for cognition. Such synchronized networks are transient and dynamic, established on the timescale of milliseconds in order to support ongoing cognitive operations. However, few studies characterizing dynamic electrophysiological brain networks have simultaneously accounted for temporal non-stationarity, spectral structure, and spatial properties. Here, we propose an analysis framework for characterizing the large-scale phase-coupling network dynamics during task performance using magnetoencephalography (MEG). We exploit the high spatiotemporal resolution of MEG to measure time-frequency dynamics of connectivity between parcellated brain regions, yielding data in tensor format. We then use a tensor component analysis (TCA)-based procedure to identify the spatio-temporal-spectral modes of covariation among separate regions in the human brain. We validate our pipeline using MEG data recorded during a hand movement task, extracting a transient motor network with beta-dominant spectral mode, which is significantly modulated by the movement task. Next, we apply the proposed pipeline to explore brain networks that support cognitive operations during a working memory task. The derived results demonstrate the temporal formation and dissolution of multiple phase-coupled networks with specific spectral modes, which are associated with face recognition, vision, and movement. The proposed pipeline can characterize the spectro-temporal dynamics of functional connectivity in the brain on the subsecond timescale, commensurate with that of cognitive performance.

Altered directed functional connectivity of the right amygdala in depression: high-density EEG study

The cortico-striatal-pallidal-thalamic and limbic circuits are suggested to play a crucial role in the pathophysiology of depression. Stimulation of deep brain targets might improve symptoms in treatment-resistant depression. However, a better understanding of connectivity properties of deep brain structures potentially implicated in deep brain stimulation (DBS) treatment is needed. Using high-density EEG, we explored the directed functional connectivity at rest in 25 healthy subjects and 26 patients with moderate to severe depression within the bipolar affective disorder, depressive episode, and recurrent depressive disorder. We computed the Partial Directed Coherence on the source EEG signals focusing on the amygdala, anterior cingulate, putamen, pallidum, caudate, and thalamus. The global efficiency for the whole brain and the local efficiency, clustering coefficient, outflow, and strength for the selected structures were calculated. In the right amygdala, all the network metrics were significantly higher (p < 0.001) in patients than in controls. The global efficiency was significantly higher (p < 0.05) in patients than in controls, showed no correlation with status of depression, but decreased with increasing medication intake (\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${{\bf{R}}}^{{\bf{2}}}{\boldsymbol{=}}{\bf{0.59}}\,{\bf{and}}\,{\bf{p}}{\boldsymbol{=}}{\bf{1.52}}{\bf{e}}{\boldsymbol{ \mbox{-} }}{\bf{05}}$$\end{document}R2=0.59andp=1.52e‐05). The amygdala seems to play an important role in neurobiology of depression. Practical treatment studies would be necessary to assess the amygdala as a potential future DBS target for treating depression.

Frequency-specific changes in the default mode network in patients with cingulate gyrus epilepsy

To identify abnormal functional connectivity of the default mode network in cingulate gyrus epilepsy, which may yield new information about the default mode network and suggest a new cingulate gyrus epilepsy biomarker. Fifteen patients with cingulate gyrus epilepsy (mean age = 21 years) and 15 healthy controls (mean age = 24 years) were studied in the resting state using magnetoencephalography. Twelve brain areas of interest in the default mode network were extracted and investigated with multifrequency signals that included alpha (α, 8–13 Hz), beta (β, 14–30 Hz), and gamma (γ, 31–80 Hz) band oscillations. Patients with cingulate gyrus epilepsy had significantly greater connectivity in all three frequency bands (α, β, γ). A frequency‐specific elevation of functional connectivity was found in patients compared to controls. The greater functional connectivity in the γ band was significantly more prominent than that of the α and β bands. Patients with cingulate gyrus epilepsy and controls differed significantly in functional connectivity between the left angular gyrus and left posterior cingulate cortex in the α, β, and γ bands. The results of the node degree analysis were similar to those of the functional connectivity analysis. Our findings reveal for the first time that brain activity in the γ band may play a key role in the default mode network in cingulate gyrus epilepsy. Altered functional connectivity of the left angular gyrus and left posterior cingulate cortex may be a new biomarker for cingulate gyrus epilepsy.

Small-World Propensity Reveals the Frequency Specificity of Resting State Networks

Goal: Functional connectivity (FC) is an important indicator of the brain's state in different conditions, such as rest/task or health/pathology. Here we used high-density electroencephalography coupled to source reconstruction to assess frequency-specific changes of FC during resting state. Specifically, we computed the Small-World Propensity (SWP) index to characterize network small-world architecture across frequencies. Methods: We collected resting state data from healthy participants and built connectivity matrices maintaining the heterogeneity of connection strengths. For a subsample of participants, we also investigated whether the SWP captured FC changes after the execution of a working memory (WM) task. Results: We found that SWP demonstrated a selective increase in the alpha and low beta bands. Moreover, SWP was modulated by a cognitive task and showed increased values in the bands entrained by the WM task. Conclusions: SWP is a valid metric to characterize the frequency-specific behavior of resting state networks.

EEGSourceSim: A framework for realistic simulation of EEG scalp data using MRI-based forward models and biologically plausible signals and noise

BACKGROUND

Electroencephalography (EEG) is widely used to investigate human brain function. Simulation studies are essential for assessing the validity of EEG analysis methods and the interpretability of results.

NEW METHOD

Here we present a simulation environment for generating EEG data by embedding biologically plausible signal and noise into MRI-based forward models that incorporate individual-subject variability in structure and function.

RESULTS

The package includes pipelines for the evaluation and validation of EEG analysis tools for source estimation, functional connectivity, and spatial filtering. EEG dynamics can be simulated using realistic noise and signal models with user specifiable signal-to-noise ratio (SNR). We also provide a set of quantitative metrics tailored to source estimation, connectivity and spatial filtering applications.

COMPARISON WITH EXISTING METHOD(S)

We provide a larger set of forward solutions for individual MRI-based head models than has been available previously. These head models are surface-based and include two sets of regions-of-interest (ROIs) that have been brought into registration with the brain of each individual using surface-based alignment - one from a whole brain and the other from a visual cortex atlas. We derive a realistic model of noise by fitting different model components to measured resting state EEG. We also provide a set of quantitative metrics for evaluating source-localization, functional connectivity and spatial filtering methods.

CONCLUSIONS

The inclusion of a larger number of individual head-models, combined with surface-atlas based labeling of ROIs and plausible models of signal and noise, allows for simulation of EEG data with greater realism than previous packages.

nCREANN: Nonlinear Causal Relationship Estimation by Artificial Neural Network; Applied for Autism Connectivity Study

Quantifying causal (effective) interactions between different brain regions are very important in neuroscience research. Many conventional methods estimate effective connectivity based on linear models. However, using linear connectivity models may oversimplify the functions and dynamics of the brain. In this paper, we propose a causal relationship estimator called nonlinear Causal Relationship Estimation by Artificial Neural Network (nCREANN) that identifies both linear and nonlinear components of effective connectivity in the brain. Furthermore, it can distinguish between these two types of connectivity components by calculating the linear and nonlinear parts of the network input-output mapping. The nCREANN performance has been verified using synthesized data and then it has been applied on EEG data collected during rest in children with autism spectrum disorder (ASD) and typically developing (TD) children. The results show that overall linear connectivity in TD subjects is higher, while the nonlinear connectivity component is more dominant in ASDs. We suggest that our findings may represent different underlying neural activation dynamics in ASD and TD subjects. The results of nCREANN may provide new insight into the connectivity between the interactive brain regions.

Functional and effective connectivity based features of EEG signals for object recognition

Classifying different object categories is one of the most important aims of brain-computer interface researches. Recently, interactions between brain regions were studied using different methods, such as functional and effective connectivity techniques. Functional and effective connectivity techniques are applied to estimate human brain areas connectivity. The main purpose of this study is to compare classification accuracy of the most advanced functional and effective methods in order to classify 12 basic object categories using Electroencephalography (EEG) signals. In this paper, 19 channels EEG signals were collected from 10 healthy subjects; when they were visiting color images and instructed to select the target images among others. Correlation, magnitude square coherence, wavelet coherence (WC), phase synchronization and mutual information were applied to estimate functional cortical connectivity. On the other hand, directed transfer function, partial directed coherence, generalized partial directed coherence (GPDC) were used to obtain effective cortical connectivity. After feature extraction, the scalar feature selection methods including T-test and one-sided-anova were applied to rank and select the most informative features. The selected features were classified by a one-against-one support vector machine classifier. The results indicated that the use of different techniques led to different classifying accuracy and brain lobes analysis. WC and GPDC are the most accurate methods with performances of 80.15% and 64.43%, respectively.

Information-theoretic approach to detect directional information flow in EEG signals induced by TMS

Effective connectivity analysis has been widely applied to noninvasive recordings such as functional magnetic resonance imaging and electroencephalograms (EEGs). Previous studies have aimed to extract the causal relations between brain regions, but the validity of the derived connectivity has not yet been fully determined. This is because it is generally difficult to identify causality in the usual experimental framework based on observations alone. Transcranial magnetic stimulation (TMS) provides a framework in which a controllable perturbation is applied to a local brain region and the effect is examined by comparing the neural activity with and without this stimulation. This study evaluates two methods for effective connectivity analysis, symbolic transfer entropy (STE) and vector autoregression (VAR), by applying them to TMS-EEG data. In terms of the consistency of results from different experimental sessions, STE is found to yield robust results irrespective of sessions, whereas VAR produces less correlation between sessions. Furthermore, STE preferentially detects the directional information flow from the TMS target. Taken together, our results suggest that STE is a reliable method for detecting the effect of TMS, implying that it would also be useful for identifying neural activity during cognitive tasks and resting states.