Relationships between intrinsic functional connectivity, cognitive control, and reading achievement across development

A novel transfer learning framework for non-uniform conductivity estimation with limited data in personalized brain stimulation

Objective. Personalized transcranial magnetic stimulation (TMS) requires individualized head models that incorporate non-uniform conductivity to enable target-specific stimulation. Accurately estimating non-uniform conductivity in individualized head models remains a challenge due to the difficulty of obtaining precise ground truth data. To address this issue, we have developed a novel transfer learning-based approach for automatically estimating non-uniform conductivity in a human head model with limited data.Approach. The proposed method complements the limitations of the previous conductivity network (CondNet) and improves the conductivity estimation accuracy. This method generates a segmentation model from T1- and T2-weighted magnetic resonance images, which is then used for conductivity estimation via transfer learning. To enhance the model's representation capability, a Transformer was incorporated into the segmentation model, while the conductivity estimation model was designed using a combination of Attention Gates and Residual Connections, enabling efficient learning even with a small amount of data.Main results. The proposed method was evaluated using 1494 images, demonstrating a 2.4% improvement in segmentation accuracy and a 29.1% increase in conductivity estimation accuracy compared with CondNet. Furthermore, the proposed method achieved superior conductivity estimation accuracy even with only three training cases, outperforming CondNet, which was trained on an adequate number of cases. The conductivity maps generated by the proposed method yielded better results in brain electrical field simulations than CondNet.Significance. These findings demonstrate the high utility of the proposed method in brain electrical field simulations and suggest its potential applicability to other medical image analysis tasks and simulations.

Normalization and cross-entropy connectivity in brain disease classification

In resting-state functional magnetic resonance imaging (rs-fMRI), Pearson correlation has traditionally been the dominant method for constructing brain connectivity. This paper introduces an entropy-based connectivity approach utilizing subject-level Z score normalization, which not only standardizes signal amplitudes across subjects but also preserves interregional signal differences more effectively than Pearson correlation. Furthermore, the proposed method incorporates cross-entropy techniques, offering an advanced perspective on the temporal ordering of signals between brain regions rather than merely capturing their synchronization. Experimental results demonstrate that the proposed subject-normalized cross-joint entropy achieves superior classification accuracy in schizophrenia, mild cognitive impairment, and autism spectrum disorder, outperforming the conventional normalized correlation method by approximately 4%, 6%, and 7%, respectively. Additionally, the observed performance improvement may be attributed to changes in the symmetry of functional connectivity between brain regions-an aspect often overlooked in traditional functional connectivity analyses.

Parental warmth buffers the negative impact of weaker fronto-striatal connectivity on early adolescents' academic achievement

In past decades, the positive role of self-control in students' academic success has attracted plenty of scholarly attention. However, fewer studies have examined the link between adolescents' neural development of the inhibitory control system and their academic achievement, especially using a longitudinal approach. Moreover, less is known about the role of parents in this link. Using large-scale longitudinal data from the Adolescent Brain Cognitive Development (ABCD) study (N = 9574; mean age = 9.94 years at baseline, SD = .63; 50% girls), the current study took an integrative biopsychosocial approach to explore the longitudinal link between early adolescents' fronto-striatal connectivity and their academic achievement, with attention to the moderating role of parental warmth. Results showed that weaker intrinsic connectivity between the frontoparietal network and the striatum was associated with early adolescents' worse academic achievement over 2 years during early adolescence. Notably, parental warmth moderated the association between fronto-striatal connectivity and academic achievement, such that weaker fronto-striatal connectivity was only predictive of worse academic achievement among early adolescents who experienced low levels of parental warmth. Taken together, the findings demonstrate weaker fronto-striatal connectivity as a risk factor for early adolescents' academic development and highlight parental warmth as a protective factor for academic development among those with weaker connectivity within the inhibitory control system.

An Explainable Unified Framework of Spatio-Temporal Coupling Learning With Application to Dynamic Brain Functional Connectivity Analysis

Time-series data such as fMRI and MEG carry a wealth of inherent spatio-temporal coupling relationship, and their modeling via deep learning is essential for uncovering biological mechanisms. However, current machine learning models for mining spatio-temporal information usually overlook this intrinsic coupling association, in addition to poor explainability. In this paper, we present an explainable learning framework for spatio-temporal coupling. Specifically, this framework constructs a deep learning network based on spatio-temporal correlation, which can well integrate the time-varying coupled relationships between node representation and inter-node connectivity. Furthermore, it explores spatio-temporal evolution at each time step, providing a better explainability of the analysis results. Finally, we apply the proposed framework to brain dynamic functional connectivity (dFC) analysis. Experimental results demonstrate that it can effectively capture the variations in dFC during brain development and the evolution of spatio-temporal information at the resting state. Two distinct developmental functional connectivity (FC) patterns are identified. Specifically, the connectivity among regions related to emotional regulation decreases, while the connectivity associated with cognitive activities increases. In addition, children and young adults display notable cyclic fluctuations in resting-state brain dFC.

A Deep Dynamic Causal Learning Model to Study Changes in Dynamic Effective Connectivity During Brain Development

OBJECTIVE

Brain dynamic effective connectivity (dEC), characterizes the information transmission patterns between brain regions that change over time, which provides insight into the biological mechanism underlying brain development. However, most existing methods predominantly capture fixed or temporally invariant EC, leaving dEC largely unexplored.

METHODS

Herein we propose a deep dynamic causal learning model specifically designed to capture dEC. It includes a dynamic causal learner to detect time-varying causal relationships from spatio-temporal data, and a dynamic causal discriminator to validate these findings by comparing original and reconstructed data.

RESULTS

Our model outperforms established baselines in the accuracy of identifying dynamic causalities when tested on the simulated data. When applied to the Philadelphia Neurodevelopmental Cohort, the model uncovers distinct patterns in dEC networks across different age groups. Specifically, the evolution process of brain dEC networks in young adults is more stable than in children, and significant differences in information transfer patterns exist between them.

CONCLUSION

This study highlights the brain's developmental trajectory, where networks transition from undifferentiated to specialized structures with age, in accordance with the improvement of an individual's cognitive and information processing capability.

SIGNIFICANCE

The proposed model consists of the identification and verification of dynamic causality, utilizing the spatio-temporal fusing information from fMRI. As a result, it can accurately detect dEC and characterize its evolution over age.

Dyslexia, the Amsterdam Way

The current aim is to illustrate our research on dyslexia conducted at the Developmental Psychology section of the Department of Psychology, University of Amsterdam, in collaboration with the nationwide IWAL institute for learning disabilities (now RID). The collaborative efforts are institutionalized in the Rudolf Berlin Center. The first series of studies aimed at furthering the understanding of dyslexia using a gamified tool based on an artificial script. Behavioral measures were augmented with diffusion modeling in one study, and indices derived from the electroencephalogram were used in others. Next, we illustrated a series of studies aiming to assess individuals who struggle with reading and spelling using similar research strategies. In one study, we used methodology derived from the machine learning literature. The third series of studies involved intervention targeting the phonics of language. These studies included a network analysis that is now rapidly gaining prominence in the psychopathology literature. Collectively, the studies demonstrate the importance of letter-speech sound mapping and word decoding in the acquisition of reading. It was demonstrated that focusing on these abilities may inform the prediction, classification, and intervention of reading difficulties and their neural underpinnings. A final section examined dyslexia, conceived as a neurobiological disorder. This analysis converged on the conclusion that recent developments in the psychopathology literature inspired by the focus on research domain criteria and network analysis might further the field by staying away from longstanding debates in the dyslexia literature (single vs. a multiple deficit, category vs. dimension, disorder vs. lack of skill).

Brain connectivity and academic skills in English learners

English learners (ELs) are a rapidly growing population in schools in the United States with limited experience and proficiency in English. To better understand the path for EL's academic success in school, it is important to understand how EL's brain systems are used for academic learning in English. We studied, in a cohort of Hispanic middle-schoolers (n = 45, 22F) with limited English proficiency and a wide range of reading and math abilities, brain network properties related to academic abilities. We applied a method for localizing brain regions of interest (ROIs) that are group-constrained, yet individually specific, to test how resting state functional connectivity between regions that are important for academic learning (reading, math, and cognitive control regions) are related to academic abilities. ROIs were selected from task localizers probing reading and math skills in the same participants. We found that connectivity across all ROIs, as well as connectivity of just the cognitive control ROIs, were positively related to measures of reading skills but not math skills. This work suggests that cognitive control brain systems have a central role for reading in ELs. Our results also indicate that an individualized approach for localizing brain function may clarify brain-behavior relationships.

Deep learning with explainability for characterizing age-related intrinsic differences in dynamic brain functional connectivity

Although many deep learning models-based medical applications are performance-driven, i.e., accuracy-oriented, their explainability is more critical. This is especially the case with neuroimaging, where we are often interested in identifying biomarkers underlying brain development or disorders. Herein we propose an explainable deep learning approach by elucidating the information transmission mechanism between two layers of a deep network with a joint feature selection strategy that considers several shallow-layer explainable machine learning models and sparse learning of the deep network. At the end, we apply and validate the proposed approach to the analysis of dynamic brain functional connectivity (FC) from fMRI in a brain development study. Our approach can identify the differences within and between functional brain networks over age during development. The results indicate that the brain network transits from undifferentiated structures to more specialized and organized ones, and the information processing ability becomes more efficient as age increases. In addition, we detect two developmental patterns in the brain network: the FCs in regions related to visual and sound processing and mental regulation become weakened, while those between regions corresponding to emotional processing and cognitive activities are enhanced.

Testing the triple network model of psychopathology in a transdiagnostic neurodevelopmental cohort

AIM

The triple network model of psychopathology posits that altered connectivity between the Salience (SN), Central Executive (CEN), and Default Mode Networks (DMN) may underlie neurodevelopmental conditions. However, this has yet to be tested in a transdiagnostic sample of young people.

METHOD

We investigated this in 175 children (60 girls) that represent a heterogeneous population who are experiencing neurodevelopmental difficulties in cognition and behavior, and 60 comparison children (33 girls). Hyperactivity/impulsivity and inattention were assessed by parent-report. Resting-state functional Magnetic Resonance Imaging data were acquired and functional connectivity was calculated between independent network components and regions of interest. We then examined whether connectivity between the SN, CEN and DMN was dimensionally related to hyperactivity/impulsivity and inattention, whilst controlling for age, gender, and motion.

RESULTS

Hyperactivity/impulsivity was associated with increased functional connectivity between the SN, CEN, and DMN in at-risk children, whereas it was associated with decreased functional connectivity between the CEN and DMN in comparison children. These effects replicated in an adult parcellation of brain function and when using increasingly stringent exclusion criteria for in-scanner motion.

CONCLUSION

Triple network connectivity characterizes transdiagnostic neurodevelopmental difficulties with hyperactivity/impulsivity. We suggest that this may arise from delayed network segregation, difficulties sustaining CEN activity to regulate behavior, and/or a heightened developmental mismatch between neural systems implicated in cognitive control relative to those implicated in reward/affect processing.

An explainable autoencoder with multi-paradigm fMRI fusion for identifying differences in dynamic functional connectivity during brain development

Multi-paradigm deep learning models show great potential for dynamic functional connectivity (dFC) analysis by integrating complementary information. However, many of them cannot use information from different paradigms effectively and have poor explainability, that is, the ability to identify significant features that contribute to decision making. In this paper, we propose a multi-paradigm fusion-based explainable deep sparse autoencoder (MF-EDSAE) to address these issues. Considering explainability, the MF-EDSAE is constructed based on a deep sparse autoencoder (DSAE). For integrating information effectively, the MF-EDASE contains the nonlinear fusion layer and multi-paradigm hypergraph regularization. We apply the model to the Philadelphia Neurodevelopmental Cohort and demonstrate it achieves better performance in detecting dynamic FC (dFC) that differ significantly during brain development than the single-paradigm DSAE. The experimental results show that children have more dispersive dFC patterns than adults. The function of the brain transits from undifferentiated systems to specialized networks during brain development. Meanwhile, adults have stronger connectivities between task-related functional networks for a given task than children. As the brain develops, the patterns of the global dFC change more quickly when stimulated by a task.

Personality and brain contribute to academic achievements of medical students

There are many factors that influence the academic achievements of medical students, but how personality and brain modulate the academic achievements of medical students remains unclear. The study collected the personality, brain imaging, and academic data from 448 medical students at Tianjin Medical University with admission time between 2008 and 2017. Four types of academic achievements, including behavioral and social sciences, clinical sciences and skills, basic biomedical sciences, and scientific methods, were assessed by the academic records of 58 courses. Personality was evaluated by Tridimensional Personality Questionnaire and Neuroticism Extraversion Openness Personality Inventory. Brain structural and functional properties, including gray matter volume, spontaneous brain activity and functional connectivity, were computed based on magnetic resonance imaging (MRI). Linear regression was used to evaluate the associations between personality and academic achievements. A voxel-wise correlation was used to identify areas of the brain where structural and functional properties were associated with academic achievements. Mediation analysis was used to test whether brain properties and personality independently contribute to academic achievements. Our results showed that novelty seeking (NS) was negatively correlated, and conscientiousness was positively correlated with all types of academic achievements. Brain functional properties showed negatively correlated with academic achievement in basic biomedical sciences. However, we did not find any mediation effect of the brain functional properties on the association between personality (NS and conscientiousness) and academic achievement in basic biomedical sciences, nor mediation effect of the personality (NS and conscientiousness) on the association between brain functional properties and academic achievement in basic biomedical sciences. These findings suggest that specific personality (NS and conscientiousness) and brain functional properties independently contribute to academic achievements in basic biomedical sciences, and that modulation of these properties may benefit academic achievements among medical students.

Topographical functional correlates of interindividual differences in executive functions in young healthy twins

Executive functions (EF) are a set of higher-order cognitive abilities that enable goal-directed behavior by controlling lower-level operations. In the brain, those functions have been traditionally associated with activity in the Frontoparietal Network, but recent neuroimaging studies have challenged this view in favor of more widespread cortical involvement. In the present study, we aimed to explore whether the network that serves as critical hubs at rest, which we term network reliance, differentiate individuals as a function of their level of EF. Furthermore, we investigated whether such differences are driven by genetic as compared to environmental factors. For this purpose, resting-state functional magnetic resonance imaging data and the behavioral testing of 453 twins from the Colorado Longitudinal Twins Study were analyzed. Separate indices of EF performance were obtained according to a bifactor unity/diversity model, distinguishing between three independent components representing: Common EF, Shifting-specific and Updating-specific abilities. Through an approach of step-wise in silico network lesioning of the individual functional connectome, we show that interindividual differences in EF are associated with different dependencies on neural networks at rest. Furthermore, these patterns show evidence of mild heritability. Such findings add knowledge to the understanding of brain states at rest and their connection with human behavior, and how they might be shaped by genetic influences.

On Neuroeducation: Why and How to Improve Neuroscientific Literacy in Educational Professionals

New findings from the neurosciences receive much interest for use in the applied field of education. For the past 15 years, neuroeducation and the application of neuroscience knowledge were seen to have promise, but there is presently some lack of progress. The present paper states that this is due to several factors. Neuromyths are still prevalent, and there is a confusion of tongues between the many neurodisciplines and the domains of behavioral and educational sciences. Second, a focus upon cognitive neuroimaging research has yielded findings that are scientifically relevant, but cannot be used for direct application in the classroom. A third factor pertains to the emphasis which has been on didactics and teaching, whereas the promise of neuroeducation for the teacher may lie more on pedagogical inspiration and support. This article states that the most important knowledge and insights have to do with the notion of brain plasticity; the vision that development is driven by an interaction between a person's biology and the social system. This helps individuals to select and process information, and to adapt to the personal environment. The paper describes how brain maturation and neuropsychological development extend through the important period of adolescence and emergent adulthood. Over this long period, there is a major development of the Executive Functions (EFs) that are essential for both cognitive learning, social behavior and emotional processing and, eventually, personal growth. The paper describes the basic neuroscience knowledge and insights - or "neuroscientific literacy" - that the educational professional should have to understand and appreciate the above-described themes. The authors formulate a proposal for four themes of neuroscience content "that every teacher should know." These four themes are based on the Neuroscience Core Concepts formulated by the Society for Neuroscience. The authors emphasize that integrating neuroscientific knowledge and insights in the field of education should not be a one-way street; attempts directed at improving neuroscientific literacy are a transdisciplinary undertaking. Teacher trainers, experts from the neuroscience fields but also behavioral scientists from applied fields (notable applied neuropsychologists) should all contribute to for the educational innovations needed.

Sparse deep dictionary learning identifies differences of time-varying functional connectivity in brain neuro-developmental study

Recently, the focus of functional connectivity analysis of human brain has shifted from merely revealing the inter-regional functional correlation over the entire scan duration to capturing the time-varying information of brain networks and characterizing time-resolved reoccurring patterns of connectivity. Much effort has been invested into developing approaches that can track changes in re-occurring patterns of functional connectivity over time. In this paper, we propose a sparse deep dictionary learning method to characterize the essential differences of reoccurring patterns of time-varying functional connectivity between different age groups. The proposed method combines both the interpretability of sparse dictionary learning and the capability of extracting sparse nonlinear higher-level features in the latent space of sparse deep autoencoder. In other words, it learns a sparse dictionary of the original data by considering the nonlinear representation of the data in the encoder layer based on a sparse deep autoencoder. In this way, the nonlinear structure and higher-level features of the data can be captured by deep dictionary learning. The proposed method is applied to the analysis of the Philadelphia Neurodevelopmental Cohort. It shows that there exist essential differences in the reoccurrence patterns of function connectivity between child and young adult groups. Specially, children have more diffusive functional connectivity patterns while young adults possess more focused functional connectivity patterns, and the brain function transits from undifferentiated systems to specialized neural networks with the growth.