Bioremediation of Coastal and Marine Pollution due to Crude Oil Using a Microorganism Bacillus subtilis

Bacillus Subtilis as an Excellent Microbial Treatment Agent for Environmental Pollution: A Review

The use of microorganisms in environmental biotreatment is gaining attention, particularly Bacillus subtilis (B. subtilis), recognized for its effectiveness in wastewater treatment and soil remediation. Its success stems from its diverse biological activities and adaptability, which improve environmental quality and ecological balance. This paper reviews the remediation capabilities and mechanisms of B. subtilis, focusing on its applications in water purification and soil pollution management. B. subtilis facilitates pollutant degradation and adsorption through enzyme production, organic acids, unique cell wall properties, and interactions with other microorganisms. The article addresses current challenges and future directions, emphasizing the need for enhanced cultivation, screening, and genetic engineering of functional strains. Understanding the interactions of these strains with other microorganisms and studying their ecological and toxicological impacts are essential for optimizing microbial remediation, providing both theoretical and practical foundations for bioremediation efforts.

A Study of the Structure of an Anion Exchange Resin with a Quaternary Ammonium Functional Group by Using Infrared Spectroscopy and DFT Calculations

The large numbers of ion exchange resins used in various industries (food, pharmaceutitics, mining, hydrometallurgy), and especially in water treatment, are based on cross-linked polystyrene and divinylbenzene copolymers with functional groups capable of ion exchange. Their advantage, which makes them environmentally friendly, is the possibility of their regeneration and reuse. Taking into account the wide application of these materials, styrene-divinylbenzene resin with a quaternary ammonium functional group, Amberlite®IRA402, was characterized using a well-known and widely used method, FT-IR spectroscopy. As the infrared spectrum of the tested ion exchange resin was rich in bands, its detailed assignment was supported by quantum chemical calculations (DFT/B3LYP/6-31g** and DFT/PCM/B3LYP/6-31g**). Using appropriate 3D models of the resin structure, the optimization of geometry, the infrared spectrum and atomic charges from an atomic polar tensor (APT) were calculated. A detailed description of the infrared spectrum of Amberlite®IRA402 resin (Cl- form) in the spectral range of 4000-700 cm-1 was performed for the first time. The charge distribution on individual fragments of the resin structure in aqueous solution was also calculated for the first time. These studies will certainly allow for a better understanding of the styrene-divinylbenzene resin interaction in various processes with other substances, particularly in sorption processes.

Bioremoval of tannins and heavy metals using immobilized tannase and biomass of Aspergillus glaucus

BACKGROUND

The presence of inorganic pollutants and heavy metals in industrial effluents has become a serious threat and environmental issues. Fungi have a remarkable ability to exclude heavy metals from wastewater through biosorption in eco-friendly way. Tannase plays an important role in bioconversion of tannin, a major constituent of tannery effluent, to gallic acid which has great pharmaceutical applications. Therefore, the aim of the current study was to exploit the potential of tannase from Aspergillus glaucus and fungal biomass waste for the bioremediation of heavy metals and tannin.

RESULTS

Tannase from A. glaucus was partially purified 4.8-fold by ammonium sulfate precipitation (80%). The enzyme was optimally active at pH 5.0 and 40 °C and stable at this temperature for 1 h. Tannase showed high stability at different physiological conditions, displayed about 50% of its activity at 60 °C and pH range 5.0-6.0. Immobilization of tannase was carried out using methods such. as entrapment in Na-alginate and covalent binding to chitosan. The effects of Na-alginate concentrations on the beads formation and enzyme immobilization revealed that maximum immobilization efficiency (75%) was obtained with 3% Na-alginate. A potential reusability of the immobilized enzyme was showed through keeping 70% of its relative activity up to the fourth cycle. The best bioconversion efficiency of tannic acid to gallic acid by immobilized tannase was at 40 °C with tannic acid concentration up to 50 g/l. Moreover, bioremediation of heavy metal (Cr3+, Pb2+, Cu2+, Fe3+, and Mn2+) from aqueous solution using A. glaucus biomass waste was achieved with uptake percentage of (37.20, 60.30, 55.27, 79.03 and 21.13 respectively). The biomass was successfully used repeatedly for removing Cr3+ after using desorbing agent (0.1 N HCl) for three cycles.

CONCLUSION

These results shed the light on the potential use of tannase from locally isolated A. glaucus in the bioremediation of industrial tanneries contained heavy metals and tannin.

Recent Advances in Microbial-Assisted Remediation of Cadmium-Contaminated Soil

Soil contamination with cadmium (Cd) is a severe concern for the developing world due to its non-biodegradability and significant potential to damage the ecosystem and associated services. Industries such as mining, manufacturing, building, etc., rapidly produce a substantial amount of Cd, posing environmental risks. Cd toxicity in crop plants decreases nutrient and water uptake and translocation, increases oxidative damage, interferes with plant metabolism and inhibits plant morphology and physiology. However, various conventional physicochemical approaches are available to remove Cd from the soil, including chemical reduction, immobilization, stabilization and electro-remediation. Nevertheless, these processes are costly and unfriendly to the environment because they require much energy, skilled labor and hazardous chemicals. In contrasting, contaminated soils can be restored by using bioremediation techniques, which use plants alone and in association with different beneficial microbes as cutting-edge approaches. This review covers the bioremediation of soils contaminated with Cd in various new ways. The bioremediation capability of bacteria and fungi alone and in combination with plants are studied and analyzed. Microbes, including bacteria, fungi and algae, are reported to have a high tolerance for metals, having a 98% bioremediation capability. The internal structure of microorganisms, their cell surface characteristics and the surrounding environmental circumstances are all discussed concerning how microbes detoxify metals. Moreover, issues affecting the effectiveness of bioremediation are explored, along with potential difficulties, solutions and prospects.

Rhamnolipid Micellization and Adsorption Properties

Biosurfactants are naturally occurring amphiphiles that are being actively pursued as alternatives to synthetic surfactants in cleaning, personal care, and cosmetic products. On the basis of their ability to mobilize and disperse hydrocarbons, biosurfactants are also involved in the bioremediation of oil spills. Rhamnolipids are low molecular weight glycolipid biosurfactants that consist of a mono- or di-rhamnose head group and a hydrocarbon fatty acid chain. We examine here the micellization of purified mono-rhamnolipids and di-rhamnolipids in aqueous solutions and their adsorption on model solid surfaces. Rhamnolipid micellization in water is endothermic; the CMC (critical micellization concentration) of di-rhamnolipid is lower than that of mono-rhamnolipid, and both CMCs decrease upon NaCl addition. Rhamnolipid adsorption on gold surface is mostly reversible and the adsorbed layer is rigid. A better understanding of biosurfactant self-assembly and adsorption properties is important for their utilization in consumer products and environmental applications.

Co-application of biochar and microorganisms improves soybean performance and remediate cadmium-contaminated soil

Sole biochar addition or microbial inoculation as a soil amendment helps to reduce cadmium (Cd) toxicity in polluted agricultural soils. Yet the synergistic effects of microorganisms and biochar application on Cd absorption and plant productivity remain unclear. Therefore, a pot experiment was conducted to investigate the combined effect of microorganisms (Trichoderma harzianum L. and Bacillus subtilis L.), biochar (maize straw, cow manure, and poultry manure), and Cd (0, 10, and 30 ppm) on plant physiology and growth to test how biochar influences microbial growth and plant nutrient uptake, and how biochar ameliorates under Cd-stressed soil. Results showed that in comparison to non-Cd polluted soil, the highest reduction in chlorophyll content, photosynthetic rate, transpiration rate, stomatal conductance, water use efficiency, and intercellular CO2 were observed in Cd2 (30 ppm), which were 9.34%, 22.95%, 40.45%, 29.07%, 20.67%, and 22.55% respectively less than the control Cd0 (0 ppm). Among sole inoculation of microorganisms, highest stomatal conductance, water use efficiency, and intercellular CO2 were recorded with combined inoculation of both microorganisms (M3), which were 5.92%, 7.65%, and 7.28% respectively higher than the control, and reduced the Cd concentration in soil, root, and shoot by 21.34%, 28.36%, and 20.95%, respectively, compared to the control. Similarly, co-application of microorganisms and biochar ameliorated the adverse effect of Cd in soybean as well as significantly improved plant biomass, photosynthetic activity, nutrient contents, and antioxidant enzyme activities, and minimized the production of reactive oxygen species and Cd content in plants. Soil amended with poultry manure biochar had significantly improved the soil organic carbon, total nitrogen, total phosphorous, and available potassium by 43.53%, 36.97%, 22.28%, and 4.24%, respectively, and decreased the concentration of Cd in plant root and shoot by 34.68% and 47.96%, respectively, compared to the control. These findings indicate that the combined use of microorganisms and biochar as an amendment have important synergistic effects not only on the absorption of nutrients but also on the reduction of soybean Cd intake, and improve plant physiology of soybean cultivated in Cd-polluted soils as compared to sole application of microorganisms or biochar.

Cadmium toxicity in plants: Impacts and remediation strategies

Cadmium (Cd) is an unessential trace element in plants that is ubiquitous in the environment. Anthropogenic activities such as disposal of urban refuse, smelting, mining, metal manufacturing, and application of synthetic phosphate fertilizers enhance the concentration of Cd in the environment and are carcinogenic to human health. In this manuscript, we reviewed the sources of Cd contamination to the environment, soil factors affecting the Cd uptake, the dynamics of Cd in the soil rhizosphere, uptake mechanisms, translocation, and toxicity of Cd in plants. In crop plants, the toxicity of Cd reduces uptake and translocation of nutrients and water, increases oxidative damage, disrupts plant metabolism, and inhibits plant morphology and physiology. In addition, the defense mechanism in plants against Cd toxicity and potential remediation strategies, including the use of biochar, minerals nutrients, compost, organic manure, growth regulators, and hormones, and application of phytoremediation, bioremediation, and chemical methods are also highlighted in this review. This manuscript may help to determine the ecological importance of Cd stress in interdisciplinary studies and essential remediation strategies to overcome the contamination of Cd in agricultural soils.

Investigation of Bacillus licheniformis in the biodegradation of Iranian heavy crude oil: A two-stage sequential approach containing factor-screening and optimization

Oil pollution is a serious international concern due to its harmful effect on human health and the environment. This study aims to investigate the effective factors on the biodegradation of Iranian heavy crude oil by Bacillus licheniformis. For this purpose, oil removal from the artificial seawater was studied by response surface methodology (RSM). After the screening experiments, pH (4-10), NaCl concentration (0-10 g/L), and oil concentration (500-4500 ppm) were selected as influential factors. Moreover, to evaluate the bacterial capability in bioremediation of an actual polluted site, crude oil spill with a salinity of 35 g/L was experimentally simulated. The proposed model in this study clearly shows that both selected individual factors and their interactions are significantly effective on the crude oil biodegradation capacity. The results showed that Bacillus licheniformis was able to degrade crude oil at different concentrations of oil, especially at low concentrations, which are challenging in actual polluted sites. 15%-66% removal was achieved for 500-4500 ppm of crude oil after 14 days. Furthermore, according to the obtained results, this bacterium can tolerate the salinity up to 3.5%. At this salinity level, crude oil removal was 23.43 and 25.64% in neutral and alkaline conditions, respectively. Process factors were optimized, and 54.8% of crude oil was removed at optimum conditions i.e., 3500 ppm crude oil concentration, 2.5 g/L of NaCl and pH equal to 8.5. Finally, it can be concluded that the selected bacterium of this study can be more effective in harsh environments such as hypersaline and alkaline conditions.

Simultaneous Bioaugmentation and Biostimulation to Remediate Soil Contaminated by Ship Dismantling in Bangkalan District, Indonesia

BACKGROUND

High concentrations of total petroleum hydrocarbons (TPH), iron (Fe), and manganese (Mn) were identified in soil samples from two shipyards where vessel dismantling activities take place in Tanjungjati Village, Indonesia, and subjected to bioremediation.

OBJECTIVES

The aim of the present study was to determine whether the combination of surfactant solution, bioaugmentation (a consortium of Bacillus subtilis and Acinetobacter lwoffii), and biostimulation (nutrient amendment and aeration intermittent) would reduce TPH, Fe, and Mn levels from soil contaminated from ship dismantling activities.

METHODS

Iron and Mn bioavailability were examined according to the Indonesian technical guidelines for soil chemical analysis with the help of atomic absorption spectrophotometry. The n-hexane solvent soil was extracted using the ultrasonic water bath method for TPH analysis.

RESULTS

The highest removal results achieved were TPH (69.62%), Fe (87.10%), and Mn (29%) for Soil 1 samples and elimination of TPH (28.80%), Fe (65.10%), and Mn (57.38%) for Soil 2 samples using a combination of surfactant solution, bioaugmentation, and biostimulation (nutrient amendment and without aeration intermittent). Iron and Mn removal in the controls was higher than in the treated soils, which showed that Fe and Mn could decrease naturally in both contaminated soils.

CONCLUSIONS

The present study showed that bioremediation using a combination of surfactant solution, a consortium of Bacillus subtilis, and Acinetobacter lwoffii, as well as a nutrient amendment, has the potential to degrade hydrocarbons in contaminated soil. Furthermore, Bacillus subtilis and Acinetobacter lwoffii consortium used for bioaugmentation have the potential to enhance the degradation of hydrocarbons in soil.

COMPETING INTERESTS

The authors declare no competing financial interests.

A laboratory based exposure of Microcystis and Oscillatoria cyanobacterial isolates to heterotrophic bacteria

Biological control of cyanobacteria is a viable means of controlling nuisance bloom occurrences; however the majority of studies done are against Microcystis sp., with a commonly lytic effect caused. Filamentous cyanobacteria such as Oscillatoria are not as extensively studied in this area of biological control and are often part of Microcystis dominated blooms. This study employed heterotrophic bacterial isolates selected from bloom waters that indicated potential predatory behaviour against both filamentous and colonial cyanobacterial isolates. In comparison to a known Bacillus isolate, which is often reported among bacterial control agents, three other bacteria isolates were tested as control agents against non-axenic Oscillatoria and Microcystis cyanobacterial cultures. Assessments of cyanobacterial cell responses to the bacteria were conducted through water chemistry, chlorophyll a, alkaline phosphatase activity, microscopy and cyanotoxin measurements. The changes in these parameters were compared to untreated cyanobacterial cultures where no bacteria were added. The study found that at ratios of bacteria half that of Microcystis, minimal changes in chlorophyll a were observed, whilst Oscillatoria showed a decreased chlorophyll a more in the presence of isolates 1 and 3w. The assessment of alkaline phosphatase activity showed decreased activity in both cyanobacterial isolates exposed to the bacteria, relative to the untreated control sample. Microscopy analysis through fluorescence indicated that the attachment of the bacteria to the surface of the cyanobacteria hampered with the fluorescence and scanning electron microscopy indicated that the cells were damaged by the addition of the bacterial isolates. Cyanotoxin detection through the ELISA kit testing indicated that there was toxin reduction in samples treated with the bacterial isolates, with the highest reduction being close to 60% in the case of Microcystis sp. treated with isolate 3w. Similar reductions were noted in the filamentous cyanobacterium Oscillatoria, in the presence of isolate 1.

Biosurfactant and Degradative Enzymes Mediated Crude Oil Degradation by Bacterium Bacillus subtilis A1

In this work, the biodegradation of the crude oil by the potential biosurfactant producing Bacillus subtilis A1 was investigated. The isolate had the ability to synthesize degradative enzymes such as alkane hydroxylase and alcohol dehydrogenase at the time of biodegradation of hydrocarbon. The biosurfactant producing conditions were optimized as pH 7.0, temperature 40°C, 2% sucrose and 3% of yeast extract as best carbon and nitrogen sources for maximum production of biosurfactant (4.85 g l^-1). Specifically, the low molecular weight compounds, i.e., C₁₀-C₁₄ were completely degraded, while C₁₅-C₁₉ were degraded up to 97% from the total hydrocarbon pools. Overall crude oil degradation efficiency of the strain A1 was about 87% within a short period of time (7 days). The accumulated biosurfactant from the biodegradation medium was characterized to be lipopeptide in nature. The strain A1 was found to be more robust than other reported biosurfactant producing bacteria in degradation efficiency of crude oil due to their enzyme production capability and therefore can be used to remove the hydrocarbon pollutants from contaminated environment.