Achnanthidium minutissimum (Bacillariophyta) valve deformities as indicators of metal enrichment in diverse widely-distributed freshwater habitats

Exposure and recovery: The effect of different dilution factors of treated and untreated metal mining effluent on freshwater biofilm function and structure

Abandoned mines generate effluents rich in heavy metals, and these contaminants are released uncontrolled into the nearby aquatic ecosystems, causing severe pollution. However, no real solution exists, leaving a legacy of global pollution. In this study, the efficiency of the treatment technologies in reducing the ecological impacts of mining effluents to freshwater ecosystems with different dilution capacities was tested using biofilm communities as biological indicators. The functional and structural recovery capacity of biofilm communities after 21 days of exposure was assessed. With this aim, we sampled aquatic biofilms from a pristine stream and exposed them to treated (T) and untreated (U) metal mining effluent from Frongoch abandoned mine (Mid Wales, UK). Additionally, we simulated two different flow conditions for the receiving stream: high dilution (HD) and low dilution (LD). After exposure, the artificial streams were filled with artificial water for 14 days to assess the biofilm recovery. Unexposed biofilm served as control for biofilm responses (functional and structural) measured throughout time. During the exposure, short term effects on biofilm functioning (photosynthetic efficiency, nutrient uptake) were observed in T-LD, U-HD, and U-LD, whereas long term effects (community composition, chl-a, and diatom metrics) were observed on the structure of all biofilms exposed to the treated and untreated mining effluent. On the other hand, metal accumulation occurred in biofilms exposed to the mining effluents. However, a functional recovery was observed for all treatments, except in the U-LD in which biofilm structure did not present a significant recovery after the exposure period. The results presented here highlight the need to consider the dilution capacity of the receiving stream to assess the real efficiency of treatment technologies applied to mining effluents to mitigate the ecological impact on freshwater ecosystems.

Qualitative and quantitative assessment of diatom deformities and protoplasmic condition under metal and metalloid stress

Metals and metalloids are toxic, persistent, and non-biodegradable and can be biomagnified (e.g., Hg), and therefore pose a serious threat to the algal flora of aquatic ecosystems. This laboratory study tested the effects of metals (Zn, Fe, and Hg) and a metalloid (As) on the cell wall morphology and protoplasmic content of living cells of six widespread diatom genera over 28 days. Diatoms exposed to Zn and Fe had a higher frequency of deformed diatom frustules (> 1%) compared to the As, Hg, and control treatments (< 1%). Deformities in the valve outline and striae were found in all treatments, including the control, whereas deformed raphes and more than one type of deformity were more prevalent under Zn and Hg stress. The order of toxicity is as follows: Zn > Fe > Hg≈As. Deformities were more frequent in Achnanthes and Diploneis (adnate forms) than in the motile genera of Nitzschia and Navicula. The correlation between the % healthy diatoms and % deformities in all six genera showed a negative relationship with the integrity of protoplasmic content (i.e., greater alteration in protoplasmic content was associated with greater frustule deformation). We conclude that diatom deformities can be a good indicator of metal and metalloid stress in waterbodies and are very useful in the rapid biomonitoring of aquatic ecosystems.

eDNA metabarcoding reveals shifts in sediment eukaryote communities in a metal contaminated estuary

Metal contamination is a global issue impacting biodiversity in urbanised estuaries. Traditional methods to assess biodiversity are time consuming, costly and often exclude small or cryptic organisms due to difficulties with morphological identification. Metabarcoding approaches have been increasingly recognised for their utility in monitoring, however studies have focused on freshwater and marine systems despite the ecological significance of estuaries. We targeted estuarine eukaryote communities within the sediments of Australia's largest urbanised estuary, where a history of industrial activity has resulted in a metal contamination gradient. We identified specific eukaryote families with significant correlations with bioavailable metal concentrations, indicating sensitivity or tolerance to specific metals. While polychaete families Terebellidae and Syllidae demonstrated tolerance to the contamination gradient, members of the meio- and microfaunal communities including diatoms, dinoflagellates and nematodes displayed sensitivities. These may have high value as indicators but are frequently missed in traditional surveys due to sampling limitations.

Diatom assemblages from different environments of the Acoculco Caldera associated to hydrothermal and anthropogenic activity

The use of diatoms as indicators of water quality has been studied worldwide; however, the use of diatoms as indicators of thermic anomalies has received less attention. The objective of this study is not only to provide a record on algal communities, but also to investigate the relationship between the diversity in diatom species and the physicochemical conditions of water. Evaluating its temporal variability in a caldera with low permeability and cold acid hydrothermal anomalies. Diatom assemblages were identified at 11 sites. Species composition was compared between seasons (dry and wet) in different environments, as streams, ponds and pools within the caldera. The physicochemical and environmental differences are very specific, which allowed the diatom identification from geothermal and anthropogenic sources without finding mixtures. The results show that the main diatom flora of the Acoculco caldera consists of 15 dominant species. Sulphite-rich acidic hydrothermal waters are characterized by the presence of Eunotia exigua, Eunotia bilunaris, and Pinnularia brauniana. In non-hydrothermal streams, Planothidium, Achnanthidium, and Humidophila species are the most common taxa. Other diatoms from acidic environments were Frustulia saxonica, Surirella, and Stenopterobia. The assemblages are clearly different from those of alkaline environments. Epithemia, Planothidium, and Ulnaria are present in the streams and are not associated with thermalism. Ordination of diatom assemblages showed that pH, conductivity, and nutrient concentrations, some of which are influenced by anthropogenic activities, were the main factors influencing the distribution of diatom composition.

Influence of Selected Environmental Factors on Diatom β Diversity (Bacillariophyta) and the Value of Diatom Indices and Sampling Issues

Human impacts and environmental climate changes have led to a progressive decline in the diversity of diatoms in lakes in the recent past. The components of β diversity (e.g., species turnover and nestedness) and underlying factors are still poorly understood. Here, we report an investigation of two alternative approaches—beta diversity (β diversity) partitioning and local contribution to β diversity (LCBD)—including their responses to selected environmental factors and representativeness of samples in estimating the ecological fitness of a lake. The β diversity of diatoms and their local contributions could be explained by the effects of environmental variables (p < 0.01). The random forest method showed the most contribution to the variance for NO3−, Cl−, and SO42−. PERMANOVA as well as a network analysis in JASP (Jeffrey’s Amazing Statistics Program) showed significant differences between the seasons in diatom assemblages and in the diatom index for Polish lakes (IOJ). Our findings provide insights into the mechanisms responsible for community organizations along environmental gradients from the perspective of β diversity components, and mechanisms of the indication value of diatoms for lakes; the results could be used especially by countries implementing ecological assessments.

Diatoms from the Spring Ecosystems Selected for the Long-Term Monitoring of Climate-Change Effects in the Berchtesgaden National Park (Germany)

We studied diatoms from the fifteen springs selected in the Berchtesgaden National Park on behalf of the Bavarian State Ministry for the Environment to be sentinel environments of climate-change effects. For three of these springs, diatom data based on samples taken in 1997 were also available. A total of 162 species belonging to 49 genera were found sampling three microhabitat types (lithic materials, bryophytes, surface sediments). The cumulative percentage of all species included in a threat category including endangered species was 43%, confirming previous findings for comparable environments of the Alps. We could find a statistically significant positive association between the Meinzer variability index for discharge and the cumulative relative abundance of aerial diatom species. This study thus highlighted once again the relevance of discharge (and associated water-level) variability as an environmental determinant of diatom assemblages in spring ecosystems. Increased nitrate concentrations in some springs, likely due to diffuse airborne pollution and, locally, to impacts such as forest management, game, and cattle, led to a relevant occurrence of eutraphentic diatom species. Our results show a segregation of the older data in non-parametric diatom-based ordinations, suggesting a strong potential for the use of spring diatoms in studies aiming at tracking the effects of climate and environmental change.

Changes in valve morphology of two pennate diatom species during long-term culture

The morphology of diatom siliceous is a primary basis for their species identification. This study aims to measure the range of morphological changes induced in the monoclonal cultures of Fragilaria radians strains 280 and A6 and Ulnaria danica strain BK17 by cultivation in the lab for a year or more. The scanning electron microscopy revealed that the number of abnormal valves increases during the first year of culture maintenance. Specific abnormalities observed include curved valves and apices, axial areas and rimoportulae shifted from their normal positions, disordered or otherwise abnormal striae, and various growths on the valves. Similar morphological abnormalities are known to occur in diatoms exposed to microtubule inhibitors. These results show the limits of morphological variance in studied species and could be used to estimate the effect of toxic agents in natural and experimental conditions.

Symmetric and Asymmetric Components of Shape Variation in the Diatom Genus Frustulia (Bacillariophyta)

Irregularities in cell division can produce asymmetry in symmetric structures, such as outlines of diatom cells, which can reflect genetic, environmental, or random variability in developmental processes. This study examined 12 phylogenetic lineages of the diatom genus Frustulia using landmark-based geometric morphometrics to assess the variation between cell segments separated by apical and transapical axes. Although asymmetric variation within cells differed in some lineages, these irregularities most likely did not reflect the evolutionary history of the lineages. The intraclonal phenotypic plasticity of diatom frustules was induced rather by nongenetic factors, i.e., inherited valve abnormalities, constraints of siliceous cell walls, and random developmental instability during morphogenesis. The positive correlations between the symmetric and asymmetric components of shape variation indicated that the morphogenesis of diatom cell walls affected irregularities within cells and variability among the symmetrized cells to a similar extent.

Diatoms as indicators of environmental health on Korean islands

Diatoms are highly sensitive to perturbations in their environment and are thus useful as bioindicators for anthropogenic impacts such as pollution. However, there is no consensus about what aspects of diatom populations to measure (e.g., diversity, physiology, or morphology) and efficient and reliable survey protocols are lacking. Here, we evaluated the ecological status of diatom communities using both traditional and relatively novel methods on two islands (Deokjeok island and Daeijak island) affected by anthropogenic activities due to extensive agricultural practices and exploitation and that are under consideration for representative touristic sites in South Korea. Dissolved concentrations of metals and metalloid (As, Cu, Cr, Cd, Ni, Hg, Pb, and Zn) were below the ecological screening and toxicity reference values in water fractions but were above these values for sediment, particularly at one island, Deokjeok. The tested methods were generally consistent in finding little evidence for disruption of diatom communities, with dominance by Navicula and Gyrosigma, relatively high diversity, and typical abundance of lipid bodies and morphological deformities. However, analysis of lipid bodies and morphological deformities suggested greater potential anthropogenic disturbance at one site in Deokjeok. Future planning is required to ensure the maintenance of the near-pristine environments present on these islands.

Neo- and Paleo-Limnological Studies on Diatom and Cladoceran Communities of Subsidence Ponds Affected by Mine Waters (S. Poland)

Plankton assemblages can be altered to different degrees by mining. Here, we test how diatoms and cladocerans in ponds along a river in southern Poland respond to the cessation of the long-term Pb-Zn mining. There are two groups of subsidence ponds in the river valley. One of them (DOWN) was contaminated over a period of mining, which ceased in 2009, whereas the other (UP) appeared after the mining had stopped. We used diatoms and cladocerans (complete organisms in plankton and their remains in sediments) to reveal the influence of environmental change on the structure and density of organisms. The water of UP pond was more contaminated by major ions (SO42−, Cl−) and nutrients (NO3−, PO43−) than the DOWN ponds. Inversely, concentrations of Zn, Cd, Cu and Pb were significantly higher in sediment cores of DOWN ponds in comparison to those in the UP pond. Ponds during mining had higher diversity of diatoms and cladocerans than the pond formed after the mining had stopped. CCA showed that diatom and cladoceran communities related most significantly to concentrations of Pb in sediment cores. Comparison of diatom and cladoceran communities in plankton and sediment suggests significant recovery of assemblages in recent years and reduction of the harmful effect of mine-originating heavy metals. Some features of ponds such as the rate of water exchange by river flow and the presence of water plants influenced plankton communities more than the content of dissolved heavy metals.

Aquatic community structure as sentinel of recent environmental changes unraveled from lake sedimentary records from the Atacama Desert, Chile

The Atacama Desert (21-26°S) is currently one of the driest places on Earth and metal(loid)s are of special concern for this region, which hosts the largest-known porphyry copper deposits produced in Chile. Evidence of past environmental conditions is commonly preserved in natural archives, such as lacustrine sediments. Sediment records obtained from Inca Coya Lake (22°20'S-68°35'W, 2534 m.a.s.l.), a small lake located in the Atacama Desert, reflected the evolution of regional mining activity during the 20th century and sedimentation associated with decadal climate variability. We studied the aquatic community structure changes recorded in sediment records from Inca Coya Lake. By analysis of magnetic properties (susceptibility, hysteresis curves and Curie temperatures), grain size and geochemical composition of the sediments, we identified environmental periods and changes in the community of benthic and planktonic organisms (diatoms and diapausing egg bank). We identified three detrital episodes that we interpret as dry/wet phases during the last 90 years associated with the increase of flash flood events promoting hypoxia oscillations; anthropogenic (mining activity) signals were also identified. Invertebrate community structure (primary consumers) reflected the metal exposure, measured as changes in assemblage composition through species turnover. Diatom community composition was best associated with variables related to wetter/drier alternation and consequent changes in oxygen availability. Bioindicators analyzed (diatoms, diapausing egg bank and invertebrate community) demonstrated to be excellent indicators of the bioavailability of compounds in the aquatic ecosystem of Inca Coya Lake, allowing the environmental impact assessment of the water resources due to flash floods and mining activity in the driest desert of the world.

The Impact of Metal-Rich Sediments Derived from Mining on Freshwater Stream Life

Metal-rich sediments have the potential to impair life in freshwater streams and rivers and, thereby, to inhibit recovery of ecological conditions after any remediation of mine water discharges. Sediments remain metal-rich over long time periods and have long-term potential ecotoxicological interactions with local biota, unless the sediments themselves are physically removed or replaced by less metal-rich sediment. Laboratory-derived environmental quality standards are difficult to apply to the field situation, as many complicating factors exist in the real world. Therefore, there is a strong case to consider other, field-relevant, measures of toxic effects as alternatives to laboratory-derived standards and to seek better biological tools to detect, diagnose and ideally predict community-level ecotoxicological impairment. Hence, this review concentrated on field measures of toxic effects of metal-rich sediment in freshwater streams, with less emphasis on laboratory-based toxicity testing approaches. To this end, this review provides an overview of the impact of metal-rich sediments on freshwater stream life, focusing on biological impacts linked to metal contamination.

Effects of olive mill wastewater discharge on benthic biota in Mediterranean streams

Olive mill wastewaters (OMW) discharging in river ecosystems cause significant adverse effects on their water chemistry and biological communities. We here examined the effects of OMW loads in four streams of a Mediterranean basin characterized by changing flow. The diatom and macroinvertebrate community structures were compared between upstream (control) and downstream (impacted) sites receiving OMW discharge. We also tested if effects occurred at the organism level, i.e. the occurrence of deformities in diatom valves, and the sediment toxicity on the midge Chironomus riparius. We evaluated these effects through a two-year analysis, at various levels of chemical pollution and dilution capacity. The impacted sites had high phenol concentrations and organic carbon loads during and after olive mill (OM) operation, and were characterized by higher abundances of pollution-tolerant diatom and macroinvertebrate taxa. Diatom valve deformities occurred more frequently at the impacted sites. The development of C. riparius was affected by phenolic compounds and organic carbon concentrations in the sediments. The similarity in the diatom and macroinvertebrate assemblages between control and impacted sites decreased at lower flows. Diatoms were more sensitive in detecting deterioration in the biological status of OMW receiving waterways than macroinvertebrates. Our results indicate that the negative effects of OMW extended to the whole benthic community, at both assemblage and organism level.

Assessment of Diatom Assemblages in Close Proximity to Mining Activities in Nunavik, Northern Quebec (Canada)

Nunavik (Northern Quebec, Canada) is experiencing a mining boom. While several studies have been conducted in the region in relation to climate change, the effects of mining have received much less attention. In this study, we explored the use of biofilms in natural streams as an indicator of potential stress on living organisms caused by metal contamination from nickel mining activities. More specifically, we assessed diatom assemblages and the presence of teratologies (morphologic abnormalities) as a response to metals in streams located in close proximity to mining sites. Metal concentrations (as well as other cations), anions and pH values varied markedly among stations. Different diatom assemblage structures (four biotypes, i.e., groups of samples with similar diatom species composition) were observed depending on the level and the type of contamination. The frequency of diatom teratologies was higher in metal contaminated sites. The present study lays the foundation for bioassessment of metal contamination in low Arctic streams using diatom-based approaches, and will serve as a point in time reference for future evaluation of ecosystems degradation or recovery in Nunavik.

Elemental and Mineralogical Composition of the Western Andean Snow (18°S-41°S)

The snowpack is an important source of water for many Andean communities. Because of its importance, elemental and mineralogical composition analysis of the Andean snow is a worthwhile effort. In this study, we conducted a chemical composition analysis (major and trace elements, mineralogy, and chemical enrichment) of surface snow sampled at 21 sites across a transect of about 2,500 km in the Chilean Andes (18–41°S). Our results enabled us to identify five depositional environments: (i) sites 1–3 (in the Atacama Desert, 18–26°S) with relatively high concentrations of metals, high abundance of quartz and low presence of arsenates, (ii) sites 4–8 (in northern Chile, 29–32°S) with relatively high abundance of quartz and low presence of metals and arsenates, (iii) sites 9–12 (in central Chile, 33–35°S) with anthropogenic enrichment of metals, relatively high values of quartz and low abundance of arsenates, (iv) sites 13–14 (also in central Chile, 35–37°S) with relatively high values of quartz and low presence of metals and arsenates, and v) sites 15–21 (in southern Chile, 37–41°S) with relatively high abundance of arsenates and low presence of metals and quartz. We found significant anthropogenic enrichment at sites close to Santiago (a major city of 6 million inhabitants) and in the Atacama Desert (that hosts several major copper mines).

Environmental implications of metal mobility in marine sediments receiving input from a torrent affected by mine discharge

Acid Mine Drainage (AMD) is one of the most important sources of pollution in fluvial systems and can enrich rivers in dissolved and suspended metals of environmental concern. Colloidal particles may favour the transport of metals to the sea, where metals can be accumulated in bottom sediments. The aim of this paper was to evaluate the mobility of metals in the "Baia delle Favole" bottom sediments (Sestri Levante, Italy), which receive the input of the AMD impacted Gromolo Torrent, using chemical speciation (BCR sequential extraction). Basing on the Risk Assessment Code (RAC), our results showed a systematic and widespread high risk classification for Mn, whereas a medium risk is associated to Co, Cu, and Zn in the sediments collected near the mouth of the Gromolo Torrent. Moreover, in these sediments the occurrence of Fe oxyhydroxides has been observed, reflecting an increase of metals in the reducible fraction obtained with BCR.

Benthic diatom community response to metal contamination from an abandoned Cu mine: Case study of the Gromolo Torrent (Italy)

Environmental contamination has become a global problem of increasing intensity due to the exponential growth of industrialization. One main debated issue is the metal contamination of rivers receiving Acid Mine Drainage (AMD) from active/abandoned mines. In order to assess the quality of lotic systems, diatoms are commonly used, as their assemblage modifies on the basis of changes in environmental parameters. Benthic diatom changes were analyzed along the metal-impacted Gromolo Torrent (Liguria, NW Italy) with the aim of understanding the effects of input from the abandoned Libiola Cu mine. The results support the hypothesis that metals from AMD lead to massive changes in diatoms, resulting in low biological diversity and in a shift of dominance, passing from the genera Cymbella and Cocconeis to more tolerant and opportunistic species, such as Achnanthidium minutissimum and Fragilaria rumpens. The high concentrations of labile metals, measured through Diffusion Gradients in Thin-films (DGT) immediately downstream of the two AMD inputs in the torrent, corresponded to a sudden decrease in the presence of diatoms, indicating the possible reaching of acute toxic levels. In particular, A. minutissimum dominated the mining area and was positively correlated with Cu and Zn; whereas F. rumpens bloomed downstream of this area, where the metal content was diluted, and was positively correlated with As and Pb. Finally, an important abundance of Nitzschia palea and teratological forms of A. minutissimum and F. rumpens were observed downstream from the mine, indicating that metals may have an important impact on diatoms up to the torrent mouth.

Diatomeas como bioindicadores: Aspectos ecológicos de la respuesta de las algas a la eutrofización en América Latina

En este trabajo se discute la importancia taxonómica y ecológica de las diatomeas epilíticas como organismos indicadores de la calidad del agua en sistemas lóticos de América Latina, destacando algunos aspectos ecológicos de la respuesta de estas algas a la eutrofización. Dentro de los índices bióticos, se presenta y discute el Índice de diatomeas pampeanas (IDP) desarrollado por Gómez & Licursi (2001) para la región pampeana de Argentina, y el Índice Trófico de Calidad del Agua (ITCA) para sistemas lóticos subtropicales y templados en Brasil, propuesto por Lobo et al. (2015). En países tropicales como Colombia, Costa Rica y Ecuador, los resultados de investigaciones recientes que buscan establecer la tolerancia de diatomeas a la eutrofización sugieren, en general, una falta de concordancia con los valores tróficos de tolerancia de especies disponibles en la literatura científica. En la Cuenca de México, Salinas (2017) presenta el Índice de Diatomeas para la Calidad del Ecosistema (DEQI), destacando que este trabajo fue el primero en proponer un índice numérico para evaluar la calidad de los ecosistemas en función de la caracterización de la comunidad de las diatomeas epilíticas en los ríos del centro de México.

Metal toxicity and recovery response of riverine periphytic algae

In the present study, in situ assessment of metal (Cu and Zn) toxicity followed by their recovery response was examined in periphyton dominated by diatoms. For doing so, metal diffusing substrates (MDS) were constructed and deployed in the river water for 6 weeks (3 weeks stress and 3 weeks recovery after replacing metal solution from the MDS). The use of MDS ensured that colonised periphyton on metal diffusing and control substrates were exposed to similar environmental conditions. The metal toxicity and recovery response of the community was examined in terms of traditional algal community parameters (biovolume, species richness, Shannon index, relative abundance) as well as with the newer non-taxonomical parameters (deformities and lipid bodies in diatoms). Both traditional and non-taxonomical parameters indicated complete recovery (from metal toxicity) of periphytic communities after 3 weeks following the withdrawal of Cu and Zn solution from the diffusing substrates. Newer non-taxonomical parameters, such as, deformities and lipid bodies, provide a new insight to understand metal toxicity and recovery response of diatom assemblages (the dominant autotrophs in the periphyton community) because these features are directly visible in live frustules, need no expertise in identification of diatoms and can be globally assessed with simple protocol. The experimental loss of metal pollutants and the constant immigration of algae (not previously exposed to high levels of metals) in fluvial systems aided periphyton recovery. Lastly, it is found that periphytic biofilms (dominated by diatoms) proved to be good bioindicators of metal toxicity and recovery in fluvial ecosystem.

Contrasting Responses among Aquatic Organism Groups to Changes in Geomorphic Complexity Along a Gradient of Stream Habitat Restoration: Implications for Restoration Planning and Assessment

Many stream restoration projects aim to increase geomorphic complexity, assuming that this increases habitat heterogeneity and, thus, biodiversity. However, empirical data supporting these linkages remain scant. Previous assessments of stream restoration suffer from incomplete quantification of habitat complexity, or a narrow focus on only one organism group and/or one restoration measure, limiting learning. Based on a comprehensive quantification of geomorphic complexity in 20 stream reaches in northern Sweden, ranging from streams channelized for timber floating to restored and reference reaches, we investigated responses of macroinvertebrates, diatoms, and macrophytes to multiple geomorphic metrics. Sediment size heterogeneity, which was generally improved in restored sites, favored macroinvertebrate and diatom diversity and macroinvertebrate abundance. In contrast, macrophyte diversity responded to increased variation along the longitudinal stream profile (e.g., step-pools), which was not consistently improved by the restoration. Our analyses highlight the value of learning across multiple restoration projects, both in identifying which aspects of restoration have succeeded, and pinpointing other measures that might be targeted during adaptive management or future restoration. Given our results, a combination of restoration measures targeting not only sediment size heterogeneity, but also features such as step-pools and instream wood, is most likely to benefit benthic biota in streams.

Diatom responses to sewage inputs and hydrological alteration in Mediterranean streams

We analyzed the conjoint effects of sewage inputs and hydrological alteration on the occurrence of teratological forms and on the assemblage composition of stream benthic diatoms. The study was performed in 11 Mediterranean streams which received treated or untreated urban sewage (Impact sites, I), whose composition and morphological anomalies were compared to upstream unaffected (Control, C) sites. The impact sites had high concentrations of ammonium, phosphorus, and pharmaceutical compounds (antibiotics, analgesics, and anti-inflammatories), particularly in those receiving untreated sewage. Impact sites had a higher proportion of teratological forms as well as a prevalence of diatom taxa tolerant to pollution. The differences in the diatom assemblage composition between the paired C and I sites were the largest in the impacted sites that received untreated sewage inputs as well as in the systems with lower dilution capacity. In these sites, the diatom assemblage was composed by a few pollution-tolerant species. Mediterranean river systems facing hydrological stress are highly sensitive to chemical contamination, leading to the homogenization of their diatom assemblages.

Evaluating features of periphytic diatom communities as biomonitoring tools in fresh, brackish and marine waters

The aims of this study were to assess the biodiversity of periphytic diatom assemblages in fresh, brackish and marine waterbodies of Korea, and to assess the effect of environmental and anthropogenic factors on parameters such as the quantity and biovolume of lipid bodies and deformations of diatoms as early warning measures of anthropogenic impact. Diatom samples were collected from 31 sites (14 freshwater, 10 brackish and 7 marine), which included less impacted (upstream) and impacted (downstream) sites in each water type. Our results showed higher abundance and biodiversity of periphytic diatoms at the less impacted sites in terms of species richness, Shannon index, cell count and biovolume of the communities than at the impacted sites for freshwater and estuarine sites, but not for marine sites. 84 diatom species were noted in freshwater, 80 in brackish water and 40 in marine waters. In comparison to diatoms of the impacted sites, those of less impacted freshwater, brackish and marine sites had less lipid bodies (also less biovolume) and a lower percentage of teratological frustules, and showed more mobile forms in the community. Principal component analysis (PCA) also showed clear segregation of impacted from less impacted sites by the extent of the presence of lipid bodies (higher both in number and biovolume) and deformities in diatom frustules. Pearson correlation analysis revealed that lipid body induction and deformities were positively correlated with metals (Cd, Co, Cr, Cu, Fe, Pb and Zn) and nutrients (total phosphorus and total nitrogen), whereas they showed negative correlation with salinity, dissolved oxygen, suspended solutes and pH. Life-forms, lipid bodies and deformities in diatoms may be an effective biomonitoring tool for assessing biological effects of pollutants in non-marine aquatic ecosystems in Korea.

Influence of temperature in pollution-induced community tolerance approaches used to assess effects of copper on freshwater phototrophic periphyton

By measuring levels of tolerance to toxicants in microbial communities using functional toxicity tests under controlled conditions, pollution-induced community tolerance (PICT) approaches offer an effect-based tool to assess the ecological risk of chemicals in aquatic systems. However, induced tolerance of exposed microbial communities cannot always be attributed solely to the presence of toxicants as various environmental factors, such as temperature, can also be involved. Several PICT studies have been conducted to assess the effects of copper (Cu) on phototrophic periphyton, but little is known about the influence of temperature on the response of these microbial communities to acute and chronic exposure to Cu. Here, we report on a microcosm approach to assess the effects of two contrasting temperatures (18°C and 28°C) on (i) the baseline level of Cu tolerance in non-Cu-exposed phototrophic periphyton (i.e. effect of temperature on tolerance baseline), (ii) Cu tolerance acquisition by phototrophic periphyton in response to a 3-week chronic exposure to Cu at a nominal concentration of 60μgL^-1 (i.e. effect of temperature on PICT selection) and (iii) tolerance measured during short-term toxicity tests (i.e. effect of temperature on PICT detection). The aim was to evaluate how temperature conditions during the different phases of the PICT approaches may modify the causal relationship between chronic Cu exposure and measured Cu tolerance levels. Our results evidence the influence of temperature both on the basal capacity of phototrophic periphyton to tolerate subsequent exposure to Cu (i.e. influence on tolerance baseline) and on its capacity to acquire tolerance following chronic exposure to Cu (i.e. influence on PICT selection). Hence temperature must be considered when using PICT to establish causal links between chronic Cu exposure and effects on phototrophic periphyton.

Species complexes within epiphytic diatoms and their relevance for the bioindication of trophic status

The popularity of aquatic bioassessments has increased in Europe and worldwide, with a considerable number of methods being based on benthic diatoms. Recent evidence from molecular data and mating experiments has shown that some traditional diatom morphospecies represent species complexes, containing several to many cryptic species. This case study is based on epiphytic diatom and environmental data from shallow fishponds, investigating whether the recognition and use of fine taxonomic resolution (cryptic species) can improve assessment of community response to environmental drivers and increase sharpness of classification, compared to coarse taxonomic resolution (genus level and species level with unresolved species complexes). Secondly, trophy bioindication based on a species matrix divided into two compartments (species complexes and remaining species) was evaluated against the expectation that species complexes would be poor trophy indicators, due to their expected wide ecological amplitude. Finally, the response of species complexes and their members (cryptic species) to a trophic gradient (phosphorus) were compared. Multivariate analyses showed similar efficiency of all three taxonomic resolutions in depicting community patterns and their environmental correlates, suggesting that even genus level resolution is sufficient for routine bioassessment of shallow fishponds with a wide trophic range. However, after controlling for coarse taxonomic matrices, fine taxonomic resolution (with resolved cryptic species) still showed sufficient variance related to the environmental variable (habitat groups), and increased the sharpness of classification, number of indicator species for habitat categories, and gave better separation of habitat categories in the ordination space. Regression analysis of trophic bioindication and phosphorus concentration showed a weak relationship for species complexes but a close relationship for the remaining taxa. GLM models also showed that no species complex responded to phosphorus concentration. It follows that the studied species complexes have wide tolerances to, and no apparent optima for, phosphorus concentrations. In contrast, various responses (linear, unimodal, or no response) of cryptic species within species complexes were found to total phosphorus concentration. In some cases, fine taxonomic resolution to species level including cryptic species has the potential to improve data interpretation and extrapolation, supporting recent views of species surrogacy.

Exploring the effects of acid mine drainage on diatom teratology using geometric morphometry

Metal pollution of aquatic habitats is a major and persistent environmental problem. Acid mine drainage (AMD) affects lotic systems in numerous and interactive ways. In the present work, a mining area (Roșia Montană) was chosen as study site, and we focused on two aims: (i) to find the set of environmental predictors leading to the appearance of the abnormal diatom individuals in the study area and (ii) to assess the relationship between the degree of valve outline deformation and AMD-derived pollution. In this context, morphological differences between populations of Achnanthidium minutissimum and A. macrocephalum, including normal and abnormal individuals, were evidenced by means of valve shape analysis. Geometric morphometry managed to capture and discriminate normal and abnormal individuals. Multivariate analyses (NMDS, PLS) separated the four populations of the two species mentioned and revealed the main physico-chemical parameters that influenced valve deformation in this context, namely conductivity, Zn, and Cu. ANOSIM test evidenced the presence of statistically significant differences between normal and abnormal individuals within both chosen Achnanthidium taxa. In order to determine the relative contribution of each of the measured physico-chemical parameters in the observed valve outline deformations, a PLS was conducted, confirming the results of the NMDS. The presence of deformed individuals in the study area can be attributed to the fact that the diatom communities were strongly affected by AMD released from old mining works and waste rock deposits.

The use of diatoms in ecotoxicology and bioassessment: Insights, advances and challenges

Diatoms are regularly used for bioassessment and ecotoxicological studies in relation to environmental and anthropogenic disturbances. Traditional taxonomical diatom parameters (cell counts, biovolume estimates, species richness, diversity indices and metrics using sensitive and tolerant diatom species) are regularly used for these studies. In the same context, very less focus was given on new endpoints of diatoms (life-forms, nuclear anomalies, alteration in photosynthetic apparatus shape, motility, lipid bodies, size reduction and deformities), in spite of their numerous merits, such as, their easiness, quickness, cheapness, global acceptation and no especial training in diatom taxonomy. In this review we analyzed 202 articles (from lab and field studies), with the aim to investigate the bioassessment and ecotoxicological advancement taken place in diatom research especially in terms of exploring new endpoints along with the traditional taxonomical parameters in a perspective which can greatly enhance the evaluation of fluvial ecosystem quality for biomonitoring practices.

Metal transport and remobilisation in a basin affected by acid mine drainage: the role of ochreous amorphous precipitates

Metal-polluted mine waters represent a major threat to the quality of waters and sediments in a downstream basin. At the confluence between acidic mine waters and the unpolluted waters of the Gromolo Torrent (Liguria, North-West Italy), the massive formation of an ochreous amorphous precipitate takes place. This precipitate forms a soft blanket that covers the torrent bed and can be observed down to its mouth in the sea. The aim of this work is to evaluate the dispersion of metals in the Gromolo Torrent basin from the abandoned Cu-Fe sulphide mine of Libiola to the Ligurian Sea and to assess the metal remobilisation from the amorphous precipitates. The mineralogy of the superficial sediments collected in the torrent bed and the concentrations of different elements of environmental concern (Cu, Zn, Cd, Co, Cr, Mn, Ni, Pb, As, and Sb) were therefore analysed. The results showed that the precipitates contain high concentration of Fe, Al, Cu, and Zn, significantly modifying the bulk chemistry of the Gromolo Torrent sediments. In order to evaluate the possible remobilisation of ecotoxic elements from the amorphous precipitates, bulk leaching tests were performed with both deionised and seawater. Bulk leaching tests with deionised water mobilised primarily high Pb amounts, but also relatively high concentrations of Fe, Al, Cu, and Zn are released in the leachate. In seawater tests, Fe, Al, Cu, and Zn were released in smaller amounts, while other elements like Mn, Cd, Co, and Ni increased in the released fraction. Pb was still strongly released as in deionised water experiments. The results show that the interaction of precipitates and seawater can remobilise high concentrations of metals, thus affecting the surrounding environment.

Marine sediment contamination and dynamics at the mouth of a contaminated torrent: The case of the Gromolo Torrent (Sestri Levante, north-western Italy)

In this study we have examined the currents and hydrological characteristics of the water column off the mouth of the Gromolo Torrent (north-western Italy) in relation to the grain-size, mineralogical characteristics and metal distribution in the marine sediment sampled. Our purpose was to quantify and map the contamination that was carried out to sea from the abandoned Libiola Fe-Cu sulphide mine that has heavily impacted the torrent. Our results show high concentrations of Cu and Zn, and relatively high concentrations of Cd and Ni inside the bay into which the Gromolo Torrent flows. However, high concentrations of As, Cr, Hg, Mn, Pb, and V found in the northern and/or eastern parts of the study area originated from other sources. The subdivision of study stations in terms of metal and mineral contents in the bottom sediments highlighted the clear influence of the currents on their dispersion and distribution in the area.

Exploring the status of motility, lipid bodies, deformities and size reduction in periphytic diatom community from chronically metal (Cu, Zn) polluted waterbodies as a biomonitoring tool

Taxonomic metrics of diatoms are regularly used for aquatic biomonitoring, including testing for heavy metal stress. In contrast, non-taxonomical parameters in diatoms are rarely assessed. In the present study, taxonomical features of diatoms, such as cell density, chlorophyll a, species richness, and the Shannon index, were reduced at severely polluted (Cu, Zn) sites compared with less polluted sites. Some non-taxonomic parameters, such as, lipid bodies (LBs) number and size, carotenoid/chlorophyll a ratios, and frustule deformities were elevated at the severely polluted sites in comparison to the less polluted sites in both the areas. Cell size diminished and motility changed from smooth to erratic with increasing Cu and Zn pollution. Some of these behavioral and physiological changes were easily assessed (e.g., motility and formation of LBs), while morphological alterations (cell wall deformities and changes in cell size) requires more time and human expertise in diatom taxonomy. These parameters were consistent across metal concentrations of sediments, in the water, and in cells. The results illustrate the usefulness of these non-taxonomic parameters in biomonitoring, especially as early warning tools for ecotoxicity assessment and testing for sublethal effects. Some of these parameters, such as cell size and cell wall deformities, can be easily incorporated into traditional protocols, although LBs and motility metrics will require more effort.

A semi-automated, KNIME-based workflow for biofilm assays

Background

A current focus of biofilm research is the chemical interaction between microorganisms within the biofilms. Prerequisites for this research are bioassay systems which integrate reliable tools for the planning of experiments with robot-assisted measurements and with rapid data processing. Here, data structures that are both human- and machine readable may be particularly useful.

Results

In this report, we present several simplification and robotisation options for an assay of bacteria-induced biofilm formation by the freshwater diatom Achnanthidium minutissimum. We also tested several proof-of-concept robotisation methods for pipetting, as well as for measuring the biofilm absorbance directly in the multi-well plates. Furthermore, we exemplify the implementation of an improved data processing workflow for this assay using the Konstanz Information Miner (KNIME), a free and open source data analysis environment. The workflow integrates experiment planning files and absorbance read-out data, towards their automated processing for analysis.

Conclusions

Our workflow lead to a substantial reduction of the measurement and data processing workload, while still reproducing previously obtained results in the A. minutissimum biofilm assay. The methods, scripts and files we designed are described here, offering adaptable options for other medium-throughput biofilm screenings.

Electronic supplementary material

The online version of this article (doi:10.1186/s12866-016-0676-9) contains supplementary material, which is available to authorized users.

Mixed messages from benthic microbial communities exposed to nanoparticulate and ionic silver: 3D structure picks up nano-specific effects, while EPS and traditional endpoints indicate a concentration-dependent impact of silver ions

Silver nanoparticles (AgNP) are currently defined as emerging pollutants in surface water ecosystems. Whether the toxic effects of AgNP towards freshwater organisms are fully explainable by the release of ionic silver (Ag(+)) has not been conclusively elucidated. Long-term effects to benthic microbial communities (periphyton) that provide essential functions in stream ecosystems are unknown. The effects of exposure of periphyton to 2 and 20 μg/L Ag(+) (AgNO3) and AgNP (polyvinylpyrrolidone stabilised) were investigated in artificial indoor streams. The extracellular polymeric substances (EPS) and 3D biofilm structure, biomass, algae species, Ag concentrations in the water phase and bioassociated Ag were analysed. A strong decrease in total Ag was observed within 4 days. Bioassociated Ag was proportional to dissolved Ag indicating a rate limitation by diffusion across the diffusive boundary layer. Two micrograms per liter of AgNO3 or AgNP did not induce significant effects despite detectable bioassociation of Ag. The 20-μg/L AgNO3 affected green algae and diatom communities, biomass and the ratio of polysaccharides to proteins in EPS. The 20-μg/L AgNO3 and AgNP decreased biofilm volume to about 50 %, while the decrease of biomass was lower in 20 μg/L AgNP samples than the 20-μg/L AgNO3 indicating a compaction of the NP-exposed biofilms. Roughness coefficients were lower in 20 μg/L AgNP-treated samples. The more traditional endpoints (biomass and diversity) indicated silver ion concentration-dependent effects, while the newly introduced parameters (3D structure and EPS) indicated both silver ion concentration-dependent effects and effects related to the silver species applied.

Development of the Trophic Water Quality Index (TWQI) for subtropical temperate Brazilian lotic systems

This research aimed at developing the Trophic Water Quality Index (TWQI) for subtropical temperate Brazilian lotic systems based on a review of the indicative values of diatom species obtained using multivariate analysis techniques and considering the environmental gradient defined by a series of measured physical, chemical, and microbiological variables. Sampling was conducted from 2005 to 2009 in the Pardo River Hydrographic Basin, Rio Grande do Sul (RS), Brazil, and in the Andreas Stream Hydrographic Basin, RS, from 2012 to 2013. A total of 140 biological samples and 211 abiotic samples were collected. Data were analyzed by cluster analysis based on the Ward method and canonical correspondence analysis (CCA). The results indicated that total phosphate, turbidity, ammonia nitrogen, electrical conductivity, dissolved oxygen, and thermotolerant coliforms showed a significant correlation with the sample ordination made by CCA, in relation to a gradient of eutrophication. Eutrophication was operationally defined in a broad sense, including the problem of organic pollution and eutrophication of the water. The determination of the different tolerance degrees to eutrophication of the diatom taxa was used to assign trophic values of 1, 2.5, and 4 to species, corresponding to levels of low, medium, and high tolerance, respectively. By using the trophic values obtained for each diatom species, the TWQI constituted a new technological tool for environmental monitoring studies and showed a consistent, robust, and objective database for water quality assessment in subtropical temperate Brazilian lotic systems.

Capsules of the diatom Achnanthidium minutissimum arise from fibrillar precursors and foster attachment of bacteria

Achnanthidium minutissimum is a benthic freshwater diatom that forms biofilms on submerged surfaces in aquatic environments. Within these biofilms, A. minutissimum cells produce extracellular structures which facilitate substrate adhesion, such as stalks and capsules. Both consist of extracellular polymeric substance (EPS), but the microstructure and development stages of the capsules are so far unknown, despite a number of hypotheses about their function, including attachment and protection. We coupled scanning electron microscopy (SEM) to bright-field microscopy (BFM) and found that A. minutissimum capsules mostly possess an unstructured surface. However, capsule material that was mechanically stressed by being stretched between or around cells displayed fibrillar substructures. Fibrils were also found on the frustules of non-encapsulated cells, implicating that A. minutissimum capsules may develop from fibrillar precursors. Energy-dispersive X-ray (EDX) spectroscopy revealed that the capsule material do not contain silicon, distinguishing it from the frustule material. We furthermore show that bacteria preferentially attach to capsules, instead of non-encapsulated A. minutissimum cells, which supports the idea that capsules mediate diatom-bacteria interactions.