Mutual interaction between arsenic and biofilm in a mining impacted river

Geographical and Environmental Factors Differentially Shape Planktonic Microbial Community Assembly and Resistomes Composition in Urban Rivers

Global urbanization accelerates pollution challenges in urban rivers, including increased transmission of bacterial antibiotic resistance genes (ARGs), severely threatening the health of aquatic ecosystems and human health. Yet, systematic knowledge of differences in distribution and community assembly patterns of bacterial resistance across urban rivers at a continental scale is still insufficient. In this study, we conducted extensive sampling in nine representative urban rivers across China. We used amplicon and shotgun metagenomic sequencing, state-of-the-art bioinformatics, and multivariate statistics to investigate distribution patterns and community assembly mechanisms of planktonic microbiomes (i.e., bacterioplankton and planktonic microeukaryotes), including their resistomes, i.e., ARGs and metal resistance genes (MRGs). Geographical and environmental factors played a pivotal role in shaping distribution patterns of planktonic microbiomes vs. resistomes in the studied urban rivers. Phylogenetic-bin-based null model analysis (iCAMP) indicated that planktonic microbiomes, dominated by dispersal limitation and drift, tend toward spatial heterogeneity. In contrast, planktonic resistomes, driven by deterministic processes, display more similar distribution patterns. Cross-validated Mantel tests revealed that geographical factors (i.e., geographic distance) were the primary regulators of planktonic microbial community assembly, while environmental factors (i.e., temperature) control assembly processes of planktonic resistomes. Our findings provide crucial insights into the mechanisms driving the biogeographical distribution and community assembly of planktonic microbial entities in urban rivers at a continental scale, offering valuable implications for mitigating and managing the spread of ARGs from the environment to humans.

Ensuring food safety by combining phytoremediation and food crop cultivation: a case study in farmlands near a lead-zinc mine in Southwest China

Environmental pollution by heavy metals (HMs) in mining areas is a major concern worldwide since it pollutes the surrounding surface water, groundwater, and farmland soils. Once in the food chain, HMs can cause mild to life-threatening side effects thereby negatively affecting the environment and human health. To remedy this situation, cost-effective and environmentally friendly remediation approaches are needed to ensure food safety. Phytoremediation is a remediation technique that meets these criteria; however, it is still unclear whether co-cultivation of food crops during phytoremediation can produce crops that meet the required safety standards. In this study, we investigate the effectiveness of phytoremediation and food crop co-cultivation to produce "HM-free" crops from farmland soils in Sidi village in Xingping Town of Guangxi Zhuang Autonomous Region in China, contaminated by HMs from a lead-zinc mine. Our results show that (1) After 19 months of phytoremediation, the redistribution of HMs (cadmium, lead, and arsenic) from acidic to slightly acidic, neutral, and mostly weakly alkaline soils was promoted. This resulted in a reduction in HMs availability and consequently the amount absorbed by food crops. (2) The concentrations of important nutrients including nitrogen, phosphorus, and potassium were significantly increased during phytoremediation. This translated to increased plant biomass in Celosia Argentea L. (26.09%), Sedum erythrostictum Migo (18.52%), and Amaranthus cruentus L. (21.67, 33.33, and 66.67%, for consecutive harvests). (3) Co-cultivation of maize crops with low HM accumulator plants in slightly and moderately polluted sites or a rotation of rapeseed-sunflower plants with hyperaccumulator plants in the highly polluted site ensured 100% compliance with the food crop and feed safety standards. Our findings can provide an important reference for studies aimed at managing polluted sites and ensuring food safety.

Influence of extracellular polymeric substances on arsenic bioaccumulation and biotransformation in biofilms

It is well recognized that biofilms can biosorb and biotransform heavy metals in aquatic environments. However, the effects of extracellular polymeric substance (EPS) on inorganic arsenic (As) bioaccumulation and biotransformation in biofilms are still unrevealed and need to be investigated. In order to explore the above scientific issues, the As accumulation and speciation in EPS-containing or EPS-free biofilms and growth medium under As(V)/As(III) exposure conditions were measured. After the removal of EPS, the amount of As uptake (Asup) and As adsorption (Asad) in biofilms were significantly reduced, no matter whether exposed to As(V) or As(III). FTIR analysis further suggested that the interaction between these functional groups with As was limited after the removal of EPS. In the EPS-containing biofilms, the Asad was mainly As(V) with low toxicity. However, after the removal of EPS, the Asad was mainly As(III) with high fluidity, and no methylated As was found. Moreover, the removal of EPS inhibited As(III) oxidation and methylation by biofilms, resulting in the decrease of As(V) and methylated As in the growth medium. The findings of this study emphasized the essential impact of EPS on the biosorption and biotransformation of As in biofilms. This study provides a unique understanding of the role of biofilms in As biogeochemical cycle, and water quality purification function in water environments.

Bacterial tolerance and detoxification of cyanide, arsenic and heavy metals: Holistic approaches applied to bioremediation of industrial complex wastes

Cyanide is a highly toxic compound that is found in wastewaters generated from different industrial activities, such as mining or jewellery. These residues usually contain high concentrations of other toxic pollutants like arsenic and heavy metals that may form different complexes with cyanide. To develop bioremediation strategies, it is necessary to know the metabolic processes involved in the tolerance and detoxification of these pollutants, but most of the current studies are focused on the characterization of the microbial responses to each one of these environmental hazards individually, and the effect of co-contaminated wastes on microbial metabolism has been hardly addressed. This work summarizes the main strategies developed by bacteria to alleviate the effects of cyanide, arsenic and heavy metals, analysing interactions among these toxic chemicals. Additionally, it is discussed the role of systems biology and synthetic biology as tools for the development of bioremediation strategies of complex industrial wastes and co-contaminated sites, emphasizing the importance and progress derived from meta-omic studies.

Qualitative and quantitative assessment of diatom deformities and protoplasmic condition under metal and metalloid stress

Metals and metalloids are toxic, persistent, and non-biodegradable and can be biomagnified (e.g., Hg), and therefore pose a serious threat to the algal flora of aquatic ecosystems. This laboratory study tested the effects of metals (Zn, Fe, and Hg) and a metalloid (As) on the cell wall morphology and protoplasmic content of living cells of six widespread diatom genera over 28 days. Diatoms exposed to Zn and Fe had a higher frequency of deformed diatom frustules (> 1%) compared to the As, Hg, and control treatments (< 1%). Deformities in the valve outline and striae were found in all treatments, including the control, whereas deformed raphes and more than one type of deformity were more prevalent under Zn and Hg stress. The order of toxicity is as follows: Zn > Fe > Hg≈As. Deformities were more frequent in Achnanthes and Diploneis (adnate forms) than in the motile genera of Nitzschia and Navicula. The correlation between the % healthy diatoms and % deformities in all six genera showed a negative relationship with the integrity of protoplasmic content (i.e., greater alteration in protoplasmic content was associated with greater frustule deformation). We conclude that diatom deformities can be a good indicator of metal and metalloid stress in waterbodies and are very useful in the rapid biomonitoring of aquatic ecosystems.

Proteomic Analysis of Arsenic Resistance during Cyanide Assimilation by Pseudomonas pseudoalcaligenes CECT 5344

Wastewater from mining and other industries usually contains arsenic and cyanide, two highly toxic pollutants, thereby creating the need to develop bioremediation strategies. Here, molecular mechanisms triggered by the simultaneous presence of cyanide and arsenite were analyzed by quantitative proteomics, complemented with qRT-PCR analysis and determination of analytes in the cyanide-assimilating bacterium Pseudomonas pseudoalcaligenes CECT 5344. Several proteins encoded by two ars gene clusters and other Ars-related proteins were up-regulated by arsenite, even during cyanide assimilation. Although some proteins encoded by the cio gene cluster responsible for cyanide-insensitive respiration decreased in the presence of arsenite, the nitrilase NitC required for cyanide assimilation was unaffected, thus allowing bacterial growth with cyanide and arsenic. Two complementary As-resistance mechanisms were developed in this bacterium, the extrusion of As(III) and its extracellular sequestration in biofilm, whose synthesis increased in the presence of arsenite, and the formation of organoarsenicals such as arseno-phosphoglycerate and methyl-As. Tetrahydrofolate metabolism was also stimulated by arsenite. In addition, the ArsH2 protein increased in the presence of arsenite or cyanide, suggesting its role in the protection from oxidative stress caused by both toxics. These results could be useful for the development of bioremediation strategies for industrial wastes co-contaminated with cyanide and arsenic.

Assessment of the Chronic Toxicity and Interactions between Arsenic and Riverbed Biofilms

The toxic effect of exposure to arsenic, As(V), at concentrations of 0 to 30 mg L-1, for 49 days, on epipsammic biofilms, was evaluated in a microcosm experiment. The growth and composition of biofilms developed on sediments containing As concentrations of 31 mg kg-1 and 85 mg kg-1 were compared, using photosynthetic parameters and Live/Dead stains as end points. A toxic effect of arsenic could not be demonstrated; however, biofilm growth was higher over the sediment with higher arsenic concentrations, suggesting the development of pollution-induced community induced tolerance (PICT). Nevertheless, PICT was not observed after exposure to high arsenic concentration in the laboratory, as there were no differences in algal growth between the previous 0 and 30 mg L-1 systems exposed to new 30 mg As L-1 dissolution over 29 days. The algal composition was affected by the added arsenic, and brown algae were the most tolerant compared to green algae and cyanophyceae, as their percentage increased from 25 and 33% in the control samples to 57 and 47% in the samples with the highest added As concentration. In turn, the biofilm development influenced arsenic redistribution and speciation. Arsenic concentration in water decreased with time during the incubation experiment, retained by the sediment particles and the biofilm. In the biofilm, extracellular As was significantly higher (up to 11 times) than intracellular arsenic. As(V) was the predominant species in water and in the biofilm, but products of biotic transformation, namely As(III), DMA(V) and MMA(V), were also found in the solution and in the biofilm in some systems, demonstrating reduction and methylation by the organisms. As a conclusion, a toxic effect was not detected for the concentrations evaluated. Biofilms naturally exposed in the river system to high As concentrations acquire pollution-induced tolerance; however, tolerance was not acquired by exposure to 30 mg L-1 for 29 days in the laboratory.

The biotransformation of arsenic by spent mushroom compost - An effective bioremediation agent

Spent mushroom compost (SMC) is a lignocellulose-rich waste material commonly used in the passive treatment of heavy metal-contaminated environments. In this study, we investigated the bioremediation potential of SMC against an inorganic form of arsenic, examining the individual abiotic and biotic transformations carried out by SMC. We demonstrated, that key SMC physiological groups of bacteria (denitrifying, cellulolytic, sulfate-reducing, and heterotrophic) are resistant to arsenites and arsenates, while the microbial community in SMC is also able to oxidize As(III) and reduce As(V) in respiratory metabolisms, although the SMC did not contain any As. We showed, that cooperation between arsenate and sulfate-reducing bacteria led to the precipitation of As_xS_y. We also found evidence of the significant role organic acids may play in arsenic complexation, and we demonstrated the occurrence of As-binding proteins in the SMC. Furthermore, we confirmed, that biofilm produced by the microbial community in SMC was able to trap As(V) ions. We postulated, that the above-mentioned transformations are responsible for the sorption efficiency of As(V) (up to 25%) and As(III) (up to 16%), as well as the excellent buffering properties of SMC observed in the sorption experiments.

Metal speciation of the Paraopeba river after the Brumadinho dam failure

On January 25, 2019, a tailings dam at the Córrego do Feijão iron ore mine (Brumadinho, Minas Gerais, southern Brazil) ruptured and released ~12 million m³ of mine tailings into the Paraopeba River, which is an important source of drinking water to a populous region. While water potability due to a strong increase in turbidity has been well documented, possible effects of metal contamination are yet to be addressed. We investigated the speciation of metals in the river water and desorption of metals from sediments as a means of supporting risk assessment, using the diffusive gradient in thin films (DGT) technique, desorption experiments and chemical speciation calculations. The results of the in-situ DGT monitoring revealed that the labile concentrations of metals were low in relation to the respective total and dissolved concentrations. Chemical speciation calculations showed that the heavy metals were not stable in the Paraopeba River. The desorption experiments suggested that sediments may release a limited amount of As and Cu, but large amounts of Mn into the river water. Higher concentrations of Fe and Mn indicated a possible association with the impact of mine tailings. In general, the total metal concentrations during the rainy season were higher than those during the dry season, whereas the reverse was generally the case for labile forms. This pattern reveals that metal speciation is intrinsically dependent on the seasonal variation of the hydrological conditions.

Characterization of river biofilm responses to the exposure with heavy metals using a novel micro fluorometer biosensor

River biofilms are a suitable indicator of toxic stress in aquatic ecosystems commonly exposed to various anthropogenic pollutants from industrial, domestic, and agricultural sources. Among these pollutants, heavy metals are of particular concern as they are known to interfere with various physiological processes of river biofilm, directly or indirectly related to photosynthetic performance. Nevertheless, only limited toxicological data are available on the mechanisms and toxicodynamics of heavy metals in biofilms. Pulse Amplitude Modulated (PAM) fluorometry is a rapid, non-disruptive, well-established technique to monitor toxic responses on photosynthetic performance, fluorescence-kinetics, and changes in yield in other non-photochemical processes. In this study, a new micro-PAM-sensor was tested to assess potential acute and chronic effects of heavy metals in river biofilm. Toxicity values across the three parameters considered in this study (photosynthetic yield YII, non-photochemical quenching NPQ, and basal fluorescence F₀) were comparable, as determined EC50 were within one order of magnitude (EC50 ∼1-10 mg L^-1). However, the stimulation of NPQ was more clearly associated with early acute effects, especially in illuminated samples, while depression of YII and F₀ were more prevalent in chronic tests. These results have implications for the development of functional indicators for the biomonitoring of aquatic health, in particular for the use of river biofilm as a bioindicator of water quality. In conclusion, the approach proposed seems promising to characterize and monitor the exposure and impact of heavy metals on river periphyton communities. Furthermore, this study provides a fast, highly sensitive, inexpensive, and accurate laboratory method to test effects of pollutants on complex periphyton communities that can also give insights regarding the probable toxicological mechanisms of heavy metals on photosynthetic performance in the river biofilm.

Prospect of abandoned metal mining sites from a hydrogeochemical perspective

Land exploitation for mining sector may leave a series of environmental impacts on our ecosystem if not appropriately managed. Therefore, the present study attempts to evaluate the various environmental aspects due to abandoned metal mining including former iron ore, bauxite, and tin mining lands in view of its hydrogeochemical behavior. Mine-impacted waters and sediments were ascertained from former mining ponds, mine tailings, and impacted streams for interpretation of aqueous and sediment geochemistry, major and trace elements, hydrochemical facies, chemical weathering rate and CO₂ consumption, and water quality classification. Results indicated that the environmental impact of the long-abandoned iron ore mine was still evident with some high concentration of metals and acidic pH. Higher concentrations of Fe and Mn in water were noticeable in some areas while other trace elements (Pb, Zn, As, Cd, Cr, and Cu) were found below the recommended guideline values. Sediment quality reflected the trend of water quality variables mainly associated with metal(loid) elements, resulting in potential ecological risk, classified as having low to moderate risk. There were variations in terms of hydrochemical facies of the waters suggesting the influence of minerals in water. The chemical weathering rate suggests that contribution of carbonate mineral weathering was more important (up to 60%) than silicate weathering. The resulting CO₂ consumption by mineral weathering was estimated to be in the range of 1.7-9.8 × 10⁷ mol/year (former bauxite and tin mining areas can act as temporary sinks for CO₂). Water quality classifications according to several chemical indices (Kelly's ratio, sodium absorption ratio, soluble sodium percentage, residual sodium carbonate, magnesium absorption ratio, and permeability index) were also discussed in regards to mine water reuse for irrigation purpose. The findings suggest that a holistic approach that integrates all important hydrogeochemical aspects is essential for a thorough evaluation of the implication of medium- to long-term mining exploitation on its surrounding ecosystems. This would be beneficial in light of restoration potential of degraded mining land so as for future mitigation strategies in the mining sector.

Biotic and Abiotic Factors Influencing Arsenic Biogeochemistry and Toxicity in Fluvial Ecosystems: A Review

This review is focused on the biogeochemistry of arsenic in freshwaters and, especially, on the key role that benthic microalgae and prokaryotic communities from biofilms play together in through speciation, distribution, and cycling. These microorganisms incorporate the dominant iAs (inorganic arsenic) form and may transform it to other arsenic forms through metabolic or detoxifying processes. These transformations have a big impact on the environmental behavior of arsenic because different chemical forms exhibit differences in mobility and toxicity. Moreover, exposure to toxicants may alter the physiology and structure of biofilms, leading to changes in ecosystem function and trophic relations. In this review we also explain how microorganisms (i.e., biofilms) can influence the effects of arsenic exposure on other key constituents of aquatic ecosystems such as fish. At the end, we present two real cases of fluvial systems with different origins of arsenic exposure (natural vs. anthropogenic) that have improved our comprehension of arsenic biogeochemistry and toxicity in freshwaters, the Pampean streams (Argentina) and the Anllóns River (Galicia, Spain). We finish with a briefly discussion of what we consider as future research needs on this topic. This work especially contributes to the general understanding of biofilms influencing arsenic biogeochemistry and highlights the strong impact of nutrient availability on arsenic toxicity for freshwater (micro) organisms.

Effect of extracellular polymeric substances on arsenic accumulation in Chlorella pyrenoidosa

Inorganic arsenic (iAs) in its dominant dissolved phase in the environment is known to pose major threats to ecological and human health. While the biological effects in many arsenic-bearing freshwaters have been extensively studied, the behavior and bioaccumulation of dissolved iAS in the presence of extracellular polymeric substances (EPS) still remains to be a critical knowledge gap. In this study, the uptakes and kinetic characteristics of iAs were studied using Chlorella pyrenoidosa (a typical freshwater green algae) by addressing the different effects of EPS on arsenite (As^Ш) and arsenate (As^V). The arsenic uptake capacity increased as the exposure concentration increased from 0 to 300 µmol L^-1, and the uptake rate constants (K_u) in the Bio-dynamic model were greater for As^V than As^Ш (0.63-11.57 L g^-1 h^-1 vs. 0.44-5.43 L g^-1 h^-1). The toxic effects as mitigated by EPS were observed through the morphological changes of algal cells by TEM and SEM. When compared with the EPS-free algal cells (EPS-F), EPS-covered cells (EPS-C) had a higher arsenic adsorption capacity through EPS-enhanced surface adsorption and reduced intracellular uptake. The overall decrease (35% and 23.3% for As^Ш and As^V, respectively) in the maximum uptake capacity in intact algae cells favors cell's tolerance to the toxic effects of iAs. These observed discrepancies between As^Ш and As^V and between EPS-C and EPS-F were further elucidated through morphological images (TEM and SEM) and molecular/atomic spectroscopic data that combine three-dimensional excitation-emission matrix fluorescence spectroscopy (3D-EEM), Fourier transform infrared spectroscopy (FTIR) and X-ray photoelectron spectroscopy (XPS). Altogether, the spectroscopic evidence revealed the interactions of iAs with C-O-C, C-O-H and -NH₂ functional groups in EPS' tyrosine- and tryptophan-like proteins as the binding sites. Overall, this study for the first time provides comprehensive evidence on the iAs-EPS interactions. Such insights will benefit our understanding of the biogeochemical processes of iAs and the strategic development of bioremediation techniques involving microalgae in the natural and engineered systems.

Substratum-associated microbiota

This survey of 2018 literature on substratum-associated microbiota presents brief highlights on research findings from primarily freshwaters, but includes those from a variety of aquatic ecosystems. Coverage of topics associated with benthic algae and cyanobacteria, though not comprehensive, includes new methods, taxa new to science, nutrient dynamics, trophic interactions, herbicides and other pollutants, metal contaminants, nuisance, bloom-forming and harmful algae, bioassessment, and bioremediation. Coverage of bacteria, also not comprehensive, focused on methylation of mercury, metal contamination, toxins, and other environmental pollutants, including oil, as well as the use of benthic bacteria as bioindicators, in bioassessment tools and in biomonitoring. Additionally, we cover trends in recent and emerging topics on substratum-associated microbiota of relevance to the Water Environment Federation. PRACTITIONER POINTS: This review of literature from 2018 on substratum-associated microbiota presents highlights of findings on algae, cyanobacteria, and bacteria from primarily freshwaters. Topics covered that focus on algae and cyanobacteria include findings on new methods, taxa new to science, nutrient dynamics, trophic interactions, herbicides and other pollutants, metal contaminants, nuisance, bloomforming and harmful algae, bioassessment, and bioremediation. Topics covered that focus on bacteria include findings on methylation of mercury, metal contamination, toxins and other environmental pollutants, including oil, as well as the us e of benthic bacteria as bioindicators, in bioassessment tools and in biomonitoring. A brief presentation of new, noteworthy and emerging topics on substratum-associated microbiota, build on those from 2017, to highlight those of particular relevance to the Water Environment Federation.

Connected partner-switches control the life style of Pseudomonas aeruginosa through RpoS regulation

Biofilm formation is a complex process resulting from the action of imbricated pathways in response to environmental cues. In this study, we showed that biofilm biogenesis in the opportunistic pathogen Pseudomonas aeruginosa depends on the availability of RpoS, the sigma factor regulating the general stress response in bacteria. Moreover, it was demonstrated that RpoS is post-translationally regulated by the HsbR-HsbA partner switching system as has been demonstrated for its CrsR-CrsA homolog in Shewanella oneidensis. Finally, it was established that HsbA, the anti-sigma factor antagonist, has a pivotal role depending on its phosphorylation state since it binds HsbR, the response regulator, when phosphorylated and FlgM, the anti-sigma factor of FliA, when non-phosphorylated. The phosphorylation state of HsbA thus drives the switch between the sessile and planktonic way of life of P. aeruginosa by driving the release or the sequestration of one or the other of these two sigma factors.