Long-term variations in fish community structure under multiple stressors in a semi-closed marine ecosystem in the South China Sea

Exploring changes in epibenthic food web structure after implementation of a water-sediment regulation scheme

The water-sediment regulation scheme (WSRS) in the Yellow River is a large-scale initiative to artificially regulate the flow of sediment to the sea, thereby increasing the flood-carrying capacity of the riverbed and reservoirs. Currently, systematic studies on ecological impacts of WSRS at ecosystem-level are still insufficient. This limitation hampers the pursuit of a 'green', healthy, ecosystem and sustainable fisheries. This study constructed the topological structure of food webs in the Yellow River Estuary (YRE) before, during, and after implementation of the WSRS, analyzing changes in food web complexity and key species based on fishery independent data collected in June, July, and August 2023. The results showed decreases from 59 to 52 in the number of trophic species, and from 539 to 395 in the number of feeding relationships after WSRS implementation. Increased node density, decreased link density, and decreased structural complexity index also indicated a simplification of the YRE food web structure after WSRS implementation. The relatively low value of the characteristic path length indicated that the YRE food web has high connectivity with short path lengths of trophic interaction. Based on the ranking of various topological indices, Japanese seabass (Lateolabrax japonicus) and mantis shrimp (Oratosquilla oratoria) persisted as the key species. Our research revealed limited potential ecological effects that WSRS may have on the YRE food web over a short period. The effects did not persist, and omnivorous key species were identified as being critical in contributing to overall system resilience. These omnivores with high complexity, connectivity and low path lengths allowed the food web to quickly dissipate the exogenous disruption from the WSRS. This provides a theoretical basis for assessing the future ecological health and scientific management of YRE fisheries and similar large estuaries for which sediment transport mitigation is under consideration.

Stock Assessment of the Commercial Small Pelagic Fishes in the Beibu Gulf, the South China Sea, 2006-2020

Long-term variations in population structure, growth, mortality, exploitation rate, and recruitment pattern of two major commercial small pelagic fishes (CSPFs) (Decapterus maruadsi and Trachurus japonicus) are reported based on bottom trawl survey data collected during 2006-2020 in the Beibu Gulf, South China Sea. All individuals collected during each sampling quarter over a period of 15 years were subjected to laboratory-based analysis. In this study, the stock of D. maruadsi and T. japonicus inhabiting the Beibu Gulf was assessed using length-based methods (bootstrapped electronic length frequency analysis (ELEFAN)) to complete stock assessment in different fishery management periods (the division of fisheries management periods was based on China's input and output in the South China Sea offshore fisheries over 15 years, specifically divided into period I (2006-2010), period II (2011-2015), and period III (2016-2020)). The results showed that the mean body length, dominant body size, and estimated asymptotic length of two CSPFs decreased, whereas their growth coefficient decreased, indicating miniaturization and slower growth, respectively. Estimated exploitation rates and catching body length for two CSPFs indicated that both stocks in the Beibu Gulf were overexploited in period I and moderately exploited after 2011. These stocks were taking a good turn in status in period III, with the exploitation rate much lower than the initial period and reversing the downward trend in catching body length. Furthermore, the variations in the spawning season of the two CSPF stocks and their barely satisfactory expected yield indicated the complexity of the current fishery management in the Beibu Gulf. These results suggest that management measures to reduce fishing pressure may have a positive influence on the biological characteristics of those CSPFs in the Beibu Gulf; however, the stock structure already affected by overfishing will be a huge challenge for the conservation and restoration of fisheries resources in the future. Given that the current stocks of D. maruadsi and T. japonicus in the Beibu Gulf still have low first-capture body length (Lc) and high fishing mortality (F) (compared to F0.1), we identify a need to refine population structure by controlling fishing efforts and increasing catchable size, and more consideration should be given to the local fishery resource status in fisheries management.

Gut microbiome play a crucial role in geographical and interspecies variations in mercury accumulation by fish

Mercury (Hg) contamination in fish has raised global concerns for decades. The Hg biotransformation can be manipulated by gut microbiome and it is found to have a substantial impact on the speciation and final fate of Hg in fish. However, the contribution of intestinal microbiota in geographical and interspecies variations in fish Hg levels has not been thoroughly understood. The present study compared the Hg levels in wild marine fish captured from two distinct regions in South China sea. We observed a quite "ironic" phenomenon that MeHg levels in carnivorous fish from a region with minimal human impacts (Xisha Islands, 92 ± 7.2 ng g-1 FW) were much higher than those from a region with severe human impacts (Daya Bay, 19 ± 0.41 ng g-1 FW). Furthermore, the results showed that gut microbiome determined Hg biotransformation and played a crucial role in the variances in fish Hg levels across different geographical locations and species. The intestinal methylators, rather than demethylators, were more significant in affecting Hg biotransformation in fish. The carnivorous species in Xisha Islands exhibited a higher abundance of intestinal methylators, leading to higher MeHg accumulation. Besides, the gut microbiome could be shaped in response to the elevated Hg levels in these fish, which may benefit their adaptation to Hg toxicity and overall health preservation. However, anthropogenic activities (particularly overfishing) in Daya Bay have severely affected the fish population, disrupting the reciprocal relationships between fish and intestinal microbiota and rendering them more susceptible to pathogenic microbes. Overall, this study provided a comprehensive understanding of the role of gut microbiome in Hg bioaccumulation in fish and offered valuable insights into the co-evolutionary dynamics between fish and gut microbiome in the presence of Hg exposure.

Impacts of Strong ENSO Events on Fish Communities in an Overexploited Ecosystem in the South China Sea

To better understand how fish communities respond to environmental changes under extreme climate events, we examine changes in fish communities in Beibu Gulf during strong El Niño and La Niña events. Strong La Niña and El Niño events affect the composition, abundance, and distribution of fish communities in Beibu Gulf. Fish community distribution and composition change before and after La Niña and El Niño events, and dominant species within them change with stable fishing intensity. The abundance and distribution of small pelagic fish such as Japanese jack mackerel (Trachurus japonicus) and Japanese scad (Decapterus maruadsi) are the most affected. Using a generalized additive model (GAM), we explore relationships between the abundance of T. japonicus and D. maruadsi and a suite of environmental variables. The GAM results revealed that sea surface salinity and sea surface temperature best explain changes in catch per unit effort of these two species during a La Niña event; depth, sea surface temperature, and mixed layer depth during an El Niño event. The results obtained in this study will offer support for implementing more-accurate, scientific fisheries management measures.

Assessing the Beautiful China Initiative from an environmental perspective: indicators, goals, and provincial performance

The Beautiful China Initiative (BCI) is part of China's national strategy for implementing the long-term goals of building an ecological civilization and promoting sustainable development. However, currently, there is no goal-oriented, comparable, and standardized indicator framework for monitoring the performance of the BCI. Here, we established the BCI from an environmental perspective (BCIE) index comprising 40 indicators and targets in eight fields and used a systematic approach to measure the distance and progress towards the goal of building a "Beautiful China" by 2035 at the national and subnational levels. Our analyses indicate that the BCIE index score (range: [0, 1]) was 0.757 at the national level and 0.628-0.869 at the provincial level in 2020. Between 2015 and 2020, the BCIE index scores of all provinces improved; however, large spatio-temporal variations were evident. Provinces with better BCIE performances exhibited relatively balanced scores across different sectors and cities. Our study revealed that the BCIE index scores at the city level surpassed provincial administrative boundaries, resulting in a wider range of aggregation. By focusing on the strategic arrangement of BCI, this study provides an effective index system and evaluation method for dynamic monitoring and phased evaluations at all levels of government in China.

Management strategy of the naked carp (Gymnocypris przewalskii) in the Qinghai lake using matrix population modeling

Naked carp (Gymnocypris przewalskii) is the only fish species commercially harvested in Qinghai Lake, which is the largest inland saltwater lake in China. Multiple ecological stresses such as long-term overfishing, drying-up of riverine inflows, and decreases in spawning habitat caused the naked carp population to decrease from 320,000 tons before the 1950s to only 3000 tons by the early 2000s. We used matrix projection population modeling to quantitatively simulate the dynamics of the naked carp population from the 1950s to the 2020s. Five versions of the matrix model were developed from the field and laboratory information that represented different population states (high but declining, low abundance, very low abundance, initial recovery, pristine). Equilibrium analysis was applied to density-independent versions of the matrices and population growth rate, age composition, and elasticities were compared among versions. Stochastic, density-dependent version of the most recent decade (recovering) version was used to simulate the time-dependent responses to a range of levels of artificial reproduction (addition of age-1 from hatchery) and of the pristine version to simulate combinations of fishing rate and minimum age of harvest. Results showed the major role of overfishing in the population decline and that the population growth rate was most sensitive to the survival of juveniles and the spawning success of early-age adults. Dynamic simulations showed a rapid population response to artificial reproduction when population abundance was low and that if artificial reproduction continues at its current level, then population biomass would reach 75% of its pristine biomass after 50 years. Simulations with the pristine version identified sustainable fishing levels and the importance of protecting the first few ages of maturity. Overall, modeling results showed that artificial reproduction under conditions of no fishing is an effective approach to restoring the naked carp population. Further effectiveness should consider maximizing survival in the months just after release and maintaining genetic and phenotypic diversity. More information on density-dependent growth, survival, and reproduction, as well as on the genetic diversity and growth and migratory behavior (phenotypic variation) of released and native-spawned fish, would help inform management and conservation strategies and practices going forward.

Long-term variations in trophic groups of coral reef fishes in the lagoon of Meiji Reef in the South China Sea

Fishes play significant ecological functions though many ways in coral reef, and feeding process is one of the most important. To understand responses of reef fish communities to external disturbances, we studied variations in trophic groups of fishes in the lagoon of Meiji Reef in the South China Sea based on fish specimens collected by hand-line and gillnet in 1998—2018, databases and literatures. Differences in species richness, abundance, weight and size of fish in different trophic groups among years were analysed, especially herbivorous and high-economy fish. The results indicated that the percentages of species number and weight of herbivores, piscivores and detritivores decreased significantly from 1998—1999/2016—2018. Herbivorous fishes saw the biggest decline. In the gillnet surveys, the percentages of species number and weight of herbivorous fishes in 1999 were 33.33% and 56.14%, respectively, while the percentages in 2016—2018 were all zero. The species number percentage of large-sized fishes (maximum total length ≥ 65 cm) in 1998—1999 was significantly larger than that in 2016—2018. Thirty-two fish species being found in the lagoon of Meiji Reef during 1998—1999 were not discovered during 2012—2018. Contingency table analysis showed that the disappearance of fish was not significantly related to the vulnerability or resilience of fish rather than economic value. The mean body weight of very high & high-value fish in 1998—1999 was significantly larger than that in 2016—2018. Simple linear regression showed that coral cover had the greater effect on the species number and weight of herbivorous fishes as compare to fishing power. Both fishing power and coral cover had significant effects on the mean body weight. To protect fish on Meiji Reef, we propose to strengthen the conservation initiatives (e.g., creating protected areas, prohibiting fishing, and reconstructing habitat).

Spatially structured freshwater fish population dynamics at the River Basin District scale: Implication for environmental management and fish conservation

European Union environmental policy has created a unique regulatory framework to favour aquatic ecosystem management and biodiversity conservation across European countries. Identifying the spatial structure of freshwater fish population dynamics is crucial to define region-specific management and conservation planning. To implement evidence-driven management and conservation decisions at a regional scale we assessed spatial heterogeneity in common freshwater fish population dynamics in France with a focus on trends in River Basin Districts (RBDs). The abundance and biomass growth rates of 18 common European freshwater fish species were estimated with state-space models on 546 sites distributed across the 5 main RBDs sampled in France between 1990 and 2011. Anguilla anguilla, Rutilus rutilus, Salmo trutta fario and Esox spp. exhibited large scale decline in abundance and/or biomass in several RBDs. The other species showed spatial heterogeneity in population growth rates. The main declines were observed in the Adour-Garonne and Loire-Bretagne RBDs, where management and conservation measures are urgently needed to halt the erosion of freshwater fish populations. In each of the 5 investigated RBDs, our results highlight areas where most of the common species we studied exhibited negative population growth rates. Freshwater fish surveys provide the fundamental information necessary to inform the European environmental policies and local environmental management needed to restore freshwater biodiversity. The next steps are to identify the main drivers of freshwater biodiversity erosion in the areas where we demonstrated major declines and to define the most cost-effective restoration measures.

Stock Assessment of Four Dominant Shark Bycatch Species in Bottom Trawl Fisheries in the Northern South China Sea

Sharks occupy an important ecological niche in marine ecosystems. As top predators, they can restrict and control the behavior, numbers and composition of other species through downward effects, and play an essential role in ecosystem stability. Shark fishery data are limited, and for most Chondrichthyes species there is no formal fishery resource assessment at a global level. In this study, we applied the length-based Bayesian biomass (LBB) estimation method to assess the stock status of four common shark bycatch species of which more than 100 samples were collected in coastal waters of the northern South China Sea. Estimates of the length of 50% of individuals captured by gear/the length at first capture that maximized the catch and biomass (Lc/Lc_opt) of a species ranged from 0.49 to 1.4; the draughtsboard shark Cephaloscyllium sarawakensis had the highest value, and the shortnose dogfish Squalus brevirostris had the lowest. Estimates of the collected biomass/biomass of the maximum sustainable yield (B/BMSY) ranged from 0.86 to 1.9. Both C. sarawakensis and the spadenose shark Scoliodon laticaudus were fully exploited, while the spatulasnout catshark Apristurus platyrhynchus and S. brevirostris were in good condition. To verify the stability of the LBB, length frequency data for the most common species S. laticaudus were divided into different size-class intervals; simulations revealed estimated parameters based on these to be insensitive to differences in intervals, except for the smallest (10 mm), which did not affect evaluation results. These results can be used to provide a scientific basis on which shark fisheries in this region can be managed and prior parameters for related resource assessment methods can be determined.

Fish Composition and Diversity of Four Coral Reefs in the South China Sea Based on Hand-Line Catch

To improve the overall understanding of the fish diversity and spatial patterns of major coral reefs in the South China Sea, fish assemblage composition, dominant species, biodiversity indices, and multivariate analysis of community structure were reported for four major coral reefs based on hand-line survey data in May and September 2018. A total of five orders, 21 families, 45 genera and 121 species of fish were recorded with Perciformes (78.5%) being the most diverse. The highest number (5) of dominant species was found near Chenhang Island while the lowest (2) number was detected at Zhubi Reef. The highest abundance index (7.21) occurred at Zhubi Reef, while the Shannon–Wiener diversity (4.80), Pielou’s evenness (0.81), and Simpson’s dominance (0.95) indexes were all highest at Qiliangyu Island. Based on cluster analysis and non-metric multi-dimensional scaling (NMDS), fish communities varied more spatially than seasonally. Our results led us to hypothesize that the habitat complexity and level of anthropogenic disturbance were the main factors affecting the composition of reef-dwelling fish on each coral reef. Topography was likely responsible for most variation in the spatial pattern of fish diversity.

Satellite Observation of the Marine Light-Fishing and Its Dynamics in the South China Sea

The South China Sea (SCS) is one of the most important fishery resource bases in the world. Marine fisheries, as a crucial component of regional food security and national revenue, raise wide concern about marine ecology, social-economic and political consequences at regional, national and local scales. The large-scale dynamic detection and analysis of fishing activity in the SCS is still unclear because of the accessibility of in-site data, finite automatic identification system (AIS) usage, complex geopolitics and poor additional data coverage. Nighttime light imagery (NTL) derived from low light imaging sensors and the popularity of light fishing in the SCS offers a unique way to unveil fishing activities and its dynamics. In this study, we proposed a set of algorithms for automatic detection of nighttime fishing activity and provided the first large-scale dynamic analysis of nighttime fishing activity in the SCS using monthly Visible Infrared Imaging Radiometer Suite (VIIRS) images between 2012 and 2019. The proposed method effectively minimized the spatio-temporal fluctuations in radiance values of background and their implications to ship detection by integrating high radiance gradient detection and local adaptive thresholding. Further, nighttime fishing activity trajectories were decomposed into trend and seasonal components by using Hilbert-Huang transformation (HHT) to accurately access general trends and the seasonality of nighttime fishing activity in the SCS. The typical subregions analysis, environmental driver analysis, correlation coefficient analysis and hot spot analysis were integrated to characterize the nighttime fishing activity. It appears that the nighttime fishing activity in the SCS exhibited spatio-temporal variability and heterogeneity and was shaped by policy and natural factors such as holidays, annual Chinese fishery moratoria in the Chinese Exclusive Economic Zone (EEZ) and seasonal tropical storm activity.

Identification of Fishing Vessel Types and Analysis of Seasonal Activities in the Northern South China Sea Based on AIS Data: A Case Study of 2018

In recent years, concern has increased about the depletion of marine resources caused by the overexploitation of fisheries and the degradation of ecosystems. The Automatic Identification System (AIS) is a powerful tool increasingly used for monitoring marine fishing activity. In this paper, identification of the type of fishing vessel (trawlers, gillnetters and seiners) was carried out using 150 million AIS tracking points in April, June and September 2018 in the northern South China Sea (SCS). The vessels’ spatial and temporal distribution, duration of fishing time and other activity patterns were analyzed in different seasons. An identification model for fishing vessel types was developed using a Light Gradient Boosting Machine (LightGBM) approach with three categories with a total of 60 features: speed and heading, location changes, and speed and displacement in multiple states. The accuracy of this model reached 95.68%, which was higher than other advanced algorithms such as XGBoost. It was found that the activity hotspots of Chinese fishing vessels, especially trawlers, showed a tendency to move northward through the year in the northern SCS. Furthermore, Chinese fishing vessels showed low fishing intensity during the fishing moratorium months and traditional Chinese holidays. This research work indicates the value of AIS data in providing decision-making assistance for the development of fishery resources and marine safety management in the northern SCS.