Enhanced aniline degradation by Desulfatiglans anilini in a synthetic microbial community with the phototrophic purple sulfur bacterium Thiocapsa roseopersicina

Nutrient status changes bacterial interactions in a synthetic community

Microbial interactions affect community stability and niche spaces in all ecosystems. However, it is not clear what factors influence these interactions, leading to changes in species fitness and ecological niches. Here, we utilized 16 monocultures and their corresponding pairwise co-cultures to measure niche changes among 16 cultivable bacterial species in a wide range of carbon sources, and we used resource availability as a parameter to alter the interactions of the synthetic bacterial community. Our results suggest that metabolic similarity drives niche deformation between bacterial species. We further found that resource limitation resulted in increased microbial inhibition and more negative interactions. At high resource availability, bacteria exhibited little inhibitory potential and stronger facilitation (in 71% of cases), promoting niche expansion. Overall, our results show that metabolic similarity induces different degrees of resource competition, altering pairwise interactions within the synthetic community and potentially modulating bacterial niches. This framework may lay the basis for understanding complex niche deformation and microbial interactions as modulated by metabolic similarity and resource availability.IMPORTANCEUnderstanding the intricate dynamics of microbial interactions is crucial for unraveling the stability and ecological roles of diverse ecosystems. However, the factors driving these interactions, leading to shifts in species fitness and ecological niches, remain inadequately explored. We demonstrate that metabolic similarity serves as a key driver of niche deformation between bacterial species. Resource availability emerges as a pivotal parameter, affecting interactions within the community. Our findings reveal heightened microbial inhibition and more negative interactions under resource-limited conditions. The prevalent facilitation is observed under conditions of high resource availability, underscoring the potential for niche expansion in such contexts. These findings emphasize that metabolic similarity induces varying degrees of resource competition, thereby altering pairwise interactions within the synthetic community and potentially modulating bacterial niches. Our workflow has broad implications for understanding the roles of metabolic similarity and resource availability in microbial interactions and for designing synthetic microbial communities.

Guided by the principles of microbiome engineering: Accomplishments and perspectives for environmental use

Although the accomplishments of microbiome engineering highlight its significance for the targeted manipulation of microbial communities, knowledge and technical gaps still limit the applications of microbiome engineering in biotechnology, especially for environmental use. Addressing the environmental challenges of refractory pollutants and fluctuating environmental conditions requires an adequate understanding of the theoretical achievements and practical applications of microbiome engineering. Here, we review recent cutting-edge studies on microbiome engineering strategies and their classical applications in bioremediation. Moreover, a framework is summarized for combining both top-down and bottom-up approaches in microbiome engineering toward improved applications. A strategy to engineer microbiomes for environmental use, which avoids the build-up of toxic intermediates that pose a risk to human health, is suggested. We anticipate that the highlighted framework and strategy will be beneficial for engineering microbiomes to address difficult environmental challenges such as degrading multiple refractory pollutants and sustain the performance of engineered microbiomes in situ with indigenous microorganisms under fluctuating conditions.

Degradation of aniline in water with gaseous streamer corona plasma

This paper demonstrated the effects and influencing factors in degrading aniline by gaseous streamer corona plasma along water surface under different discharging gas atmospheres. For aniline with an initial concentration of 100 mg l^-1, the degradation was fastest when the reactor was not ventilated, and the degradation rate is 98.5% under 7.5 min treatment. While the degradation was slowest when Ar was ventilated, the degradation rate is 98.6% after treatment for 60 min. Some active particles were detected using a multi-channel fibre-optic spectrometer during the discharge, such as Ar, OH, N₂, N 2 + and N. In particular, NO was detected during air discharge. The NO and N 2 + could produce NO 3 - ; then generated nitric acid would affect the pH value of the solution. The intermediate product by N₂ discharge is nitrophenol, and nitrophenol would be converted to p-benzoquinone. The O₂ discharge could produce an intermediate product of aminophenol. The intermediate products in Ar discharge were in small amounts and the final mineralization effect was the best.

Conditions that promote the formation of black bloom in aquatic microcosms and its effects on sediment bacteria related to iron and sulfur cycling

Black bloom occurs frequently in eutrophic waters. We investigated the conditions promoted the formation of black bloom via in-situ measurement in two aquatic microcosms and the effects of black bloom on the bacterial community composition. Although larger changes in dissolved oxygen (DO) were detected in the Hydrilla verticillata-dominated microcosm over the 90-day simulation, black bloom occurred more readily in the phytoplankton-dominated than macrophyte-dominated microcosm under conditions of O₂ depletion and temperature above 30 °C. The sediment bacterial community composition shifted after black bloom; the relative abundance of Thiobacillus and Sideroxydans, which oxidize iron (Fe) and sulfur (S), decreased by 47% and 48%, respectively, in the phytoplankton-dominated microcosm and by 18% and 20% in the macrophyte-dominated microcosm. By contrast, Desulfatiglans increased by 13% and 19%, respectively, after black bloom. Furthermore, inter-taxa correlations remarkably changed according to co-occurrence network analysis. Thirty-six different taxa from the phylum to the genus level were identified as biomarkers of sediments collected before and after the black bloom event. Most of these biomarkers are related to Fe/S cycling in aquatic ecosystems.

Influence of temperature on CODMn and Mn2+ removal and microbial community structure in pilot-scale biofilter

Test water temperature (TWT) is a significant operational parameter in biofilter. In this study, a pilot-scale biofilter was established to investigate the removal efficiency of COD_Mn and Mn²⁺ and the microbial community structure at different TWT. When COD_Mn and Mn²⁺ in the influent were 6-8 and 0.9-1.2 mg/L, respectively, the removal rates were 22.61% and 94.28% at the low TWT, while 69.42% and 97.85% at the high TWT, respectively. Biological COD_Mn and Mn²⁺ removal followed the first-order reaction, and at the low and high TWT, the k value was 0.00704 and 0.0738 and 0.0313 and 0.113 min^-1, respectively. Organic matter oxidizing bacteria (OMOB, Sphingopyxis, Sphingomonas, Amphiplicatus, Novosphingobium, Gemmatimonas, Chryseolinea and Sphingobium) and manganese oxidizing bacteria (MnOB, Hyphomicrobium, Pedomicrobium and Pseudomonas) were coexisted in 0-1.5 m of the biofilter bed at the low and high TWT, and the abundances were not the main factor affecting the removal efficiency, however the activity.