1
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Clarke GE, Firth JD, Ledingham LA, Horbaczewskyj CS, Bourne RA, Bray JTW, Martin PL, Eastwood JB, Campbell R, Pagett A, MacQuarrie DJ, Slattery JM, Lynam JM, Whitwood AC, Milani J, Hart S, Wilson J, Fairlamb IJS. Deciphering complexity in Pd-catalyzed cross-couplings. Nat Commun 2024; 15:3968. [PMID: 38729925 PMCID: PMC11087562 DOI: 10.1038/s41467-024-47939-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2023] [Accepted: 04/12/2024] [Indexed: 05/12/2024] Open
Abstract
Understanding complex reaction systems is critical in chemistry. While synthetic methods for selective formation of products are sought after, oftentimes it is the full reaction signature, i.e., complete profile of products/side-products, that informs mechanistic rationale and accelerates discovery chemistry. Here, we report a methodology using high-throughput experimentation and multivariate data analysis to examine the full signature of one of the most complicated chemical reactions catalyzed by palladium known in the chemical literature. A model Pd-catalyzed reaction was selected involving functionalization of 2-bromo-N-phenylbenzamide and multiple bond activation pathways. Principal component analysis, correspondence analysis and heatmaps with hierarchical clustering reveal the factors contributing to the variance in product distributions and show associations between solvents and reaction products. Using robust data from experiments performed with eight solvents, for four different reaction times at five different temperatures, we correlate side-products to a major dominant N-phenyl phenanthridinone product, and many other side products.
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Affiliation(s)
- George E Clarke
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | - James D Firth
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | | | | | - Richard A Bourne
- Institute of Process Research and Development, School of Chemistry & School of Chemical and Process Engineering, University of Leeds, Leeds, LS2 9JT, UK
| | - Joshua T W Bray
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | - Poppy L Martin
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | | | - Rebecca Campbell
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | - Alex Pagett
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | | | - John M Slattery
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | - Jason M Lynam
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | - Adrian C Whitwood
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | - Jessica Milani
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | - Sam Hart
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | - Julie Wilson
- Department of Mathematics, University of York, Heslington, York, YO10 5DD, UK.
| | - Ian J S Fairlamb
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
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2
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Chen S, Pillitteri S, Fron E, Van Meervelt L, Van der Eycken EV, Sharma UK. Visible-Light-Induced Cascade Difunctionalization of Indoles Enabled by the Synergy of Photoredox and Photoexcited Ketones: Direct Access to Alkylated Pyrrolophenanthridones. Org Lett 2022; 24:9386-9391. [PMID: 36525615 DOI: 10.1021/acs.orglett.2c03697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Herein, we describe a methodology to construct polycyclic pyrrolophenanthridones with an (amino)alkyl side chain that involves visible-light-induced decarboxylative radical addition for the intermolecular dearomatization of indoles and subsequent photoinduced C(sp2)-X bond activation via photoexcited ketones for an intramolecular cyclization cascade. Carboxylic acids serve both as a radical source toward indole dearomatization and as reductants to initiate an electron transfer with photoexcited N-acylindole derivatives in the reaction toward pyrrolophenantridone skeletons, which occurs under mild reaction conditions with good functional group tolerance.
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Affiliation(s)
- Su Chen
- Laboratory for Organic and Microwave-Assisted Chemistry (LOMAC), Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium
| | - Serena Pillitteri
- Laboratory for Organic and Microwave-Assisted Chemistry (LOMAC), Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium
| | - Eduard Fron
- Core Facility for Advanced Spectroscopy, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium
| | - Luc Van Meervelt
- Biomolecular Architecture, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium
| | - Erik V Van der Eycken
- Laboratory for Organic and Microwave-Assisted Chemistry (LOMAC), Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium.,People's Friendship University of Russia (RUDN University), Miklukho-Maklaya Street 6, RU-117198 Moscow, Russia
| | - Upendra K Sharma
- Laboratory for Organic and Microwave-Assisted Chemistry (LOMAC), Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium
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3
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Visible-Light Induced Synthesis of 8H-Indolo[3,2,1-de]phenanthridin-8-ones and Related Heterocycles Using Benzothiadiazole as Photocatalyst. Tetrahedron Lett 2022. [DOI: 10.1016/j.tetlet.2022.153648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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4
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Melzer BC, Plodek A, Bracher F. Functionalization of 4-bromobenzo[ c][2,7]naphthyridine via regioselective direct ring metalation. A novel approach to analogues of pyridoacridine alkaloids. Beilstein J Org Chem 2019; 15:2304-2310. [PMID: 31598182 PMCID: PMC6774065 DOI: 10.3762/bjoc.15.222] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2019] [Accepted: 09/18/2019] [Indexed: 12/25/2022] Open
Abstract
Readily available 4-bromobenzo[c][2,7]naphthyridine undergoes regioselective direct ring metalation at C-5 with TMPMgCl∙LiCl at −40 °C. Quenching with various electrophiles gives a broad range of 5-substituted products, which are building blocks for the synthesis of heterocyclic natural products and analogues thereof. In combination with a Parham-type cyclization a novel approach to pyrido[4,3,2-mn]acridones has been worked out.
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Affiliation(s)
- Benedikt C Melzer
- Department of Pharmacy - Center for Drug Research, Ludwig-Maximilians University Munich, Butenandtstr. 5-13, 81377 Munich, Germany
| | - Alois Plodek
- Department of Pharmacy - Center for Drug Research, Ludwig-Maximilians University Munich, Butenandtstr. 5-13, 81377 Munich, Germany
| | - Franz Bracher
- Department of Pharmacy - Center for Drug Research, Ludwig-Maximilians University Munich, Butenandtstr. 5-13, 81377 Munich, Germany
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5
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Recio J, Pérez-Redondo A, Alvarez-Builla J, Burgos C. Access to 2-substituted 1-pyridin-3-yl-β-carboline derivatives by intramolecular radical cyclization-ring opening-SNAr substitution. Org Chem Front 2019. [DOI: 10.1039/c9qo00944b] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
A new method for the synthesis of 1-pyridin-3-yl-β-carboline derivatives involving an intramolecular radical reaction and SNAr substitution, is described.
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Affiliation(s)
- Javier Recio
- Departamento de Química Orgánica y Química Inorgánica and Instituto de Investigación Química "Andrés M. del Río" (IQAR)
- Universidad de Alcalá
- 28805-Alcalá de Henares
- Madrid
- Spain
| | - Adrián Pérez-Redondo
- Departamento de Química Orgánica y Química Inorgánica and Instituto de Investigación Química "Andrés M. del Río" (IQAR)
- Universidad de Alcalá
- 28805-Alcalá de Henares
- Madrid
- Spain
| | - Julio Alvarez-Builla
- Departamento de Química Orgánica y Química Inorgánica and Instituto de Investigación Química "Andrés M. del Río" (IQAR)
- Universidad de Alcalá
- 28805-Alcalá de Henares
- Madrid
- Spain
| | - Carolina Burgos
- Departamento de Química Orgánica y Química Inorgánica and Instituto de Investigación Química "Andrés M. del Río" (IQAR)
- Universidad de Alcalá
- 28805-Alcalá de Henares
- Madrid
- Spain
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6
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7
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Stępień M, Gońka E, Żyła M, Sprutta N. Heterocyclic Nanographenes and Other Polycyclic Heteroaromatic Compounds: Synthetic Routes, Properties, and Applications. Chem Rev 2016; 117:3479-3716. [PMID: 27258218 DOI: 10.1021/acs.chemrev.6b00076] [Citation(s) in RCA: 868] [Impact Index Per Article: 108.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Two-dimensionally extended, polycyclic heteroaromatic molecules (heterocyclic nanographenes) are a highly versatile class of organic materials, applicable as functional chromophores and organic semiconductors. In this Review, we discuss the rich chemistry of large heteroaromatics, focusing on their synthesis, electronic properties, and applications in materials science. This Review summarizes the historical development and current state of the art in this rapidly expanding field of research, which has become one of the key exploration areas of modern heterocyclic chemistry.
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Affiliation(s)
- Marcin Stępień
- Wydział Chemii, Uniwersytet Wrocławski , ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Elżbieta Gońka
- Wydział Chemii, Uniwersytet Wrocławski , ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Marika Żyła
- Wydział Chemii, Uniwersytet Wrocławski , ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Natasza Sprutta
- Wydział Chemii, Uniwersytet Wrocławski , ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland
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8
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Dai J, Li N, Wang J, Schneider U. Fruitful Decades for Canthin-6-ones from 1952 to 2015: Biosynthesis, Chemistry, and Biological Activities. Molecules 2016; 21:493. [PMID: 27092482 PMCID: PMC6274392 DOI: 10.3390/molecules21040493] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Revised: 04/03/2016] [Accepted: 04/06/2016] [Indexed: 11/16/2022] Open
Abstract
In this review, more than 60 natural canthin-6-one alkaloids and their structures are considered. The biosynthesis, efficient and classic synthetic approaches, and biological activities of canthin-6-one alkaloids, from 1952 to 2015, are discussed. From an analysis of their structural properties and an investigation of the literature, possible future trends for canthin-6-one alkaloids are proposed. The information reported will be helpful in future research on canthin-6-one alkaloids.
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Affiliation(s)
- Jiangkun Dai
- College of Science, Northwest A & F University, Yangling 712100, Shaanxi, China.
| | - Na Li
- College of Science, Northwest A & F University, Yangling 712100, Shaanxi, China.
| | - Junru Wang
- College of Science, Northwest A & F University, Yangling 712100, Shaanxi, China.
| | - Uwe Schneider
- EaStCHEM School of Chemistry, The University of Edinburgh, The King's Buildings, David Brewster Road, Edinburgh EH9 3FJ, UK.
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9
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Janiga A, Krzeszewski M, Gryko DT. Diindolo[2,3-b:2',3'-f]pyrrolo[3,2-b]pyrroles as electron-rich, ladder-type fluorophores: synthesis and optical properties. Chem Asian J 2014; 10:212-8. [PMID: 25273980 DOI: 10.1002/asia.201402925] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Indexed: 11/09/2022]
Abstract
Previously unknown ladder-type heteroacenes were synthesized in just two steps from aromatic amines, 2-nitrobenzaldehydes, and biacetyl. A recently discovered multicomponent process affording 1,4-dihydropyrrolo[3,2-b]pyrroles was followed by the Cadogan reaction, which resulted in simultaneous closure of two additional pyrrole rings. Rod-like compounds synthesized in this way were stable in the absence of light, and they were transformed into bis(tert-butoxycarbonyl) derivatives. The rigid herringbone-like structure resulted in a strong absorption in the λ=350-410 nm region and very strong violet and blue emission, which was bathochromically shifted relative to the emission of the parent 1,4-dihydropyrrolo[3,2-b]pyrroles. The optical properties of these compounds strongly suggest that the conjugation spanned the entire π system. The HOMO energy level was located at -4.6 to -5.1 eV.
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Affiliation(s)
- Anita Janiga
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw (Poland)
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10
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Showalter HDH. Progress in the synthesis of canthine alkaloids and ring-truncated congeners. JOURNAL OF NATURAL PRODUCTS 2013; 76:455-467. [PMID: 23311415 DOI: 10.1021/np300753z] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
The canthines represent a fairly large subclass of β-carboline alkaloids, with the first members described 75 years ago. Over the last 60 years, many members of the parent compound, canthin-6-one (1), have been isolated from various plant sources, principally the Rutaceae and Simaroubaceae families, and recently from fungi. Structures isolated from these sources have been the subject of total synthesis, which continues to the present day. This review gives a broad overview of synthetic approaches to canthines over a 30-year period from 1982 to 2012 and summarizes recent reports on the synthesis of less well known ring-truncated congeners. These include C-ring-truncated ("ABD", 2) and A-ring-truncated ("BCD", 3) ring systems, which are providing new scaffolds for potentially useful therapeutic applications.
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Affiliation(s)
- H D Hollis Showalter
- Vahlteich Medicinal Chemistry Core, Department of Medicinal Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1065, USA.
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11
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Raeder S, Bracher F. A novel approach to the pyridoacridine ring system: synthesis of the topoisomerase inhibitor 13-deazaascididemin. Arch Pharm (Weinheim) 2012; 345:822-6. [PMID: 22760790 DOI: 10.1002/ardp.201200019] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2012] [Revised: 04/14/2012] [Accepted: 05/11/2012] [Indexed: 11/08/2022]
Abstract
A novel approach to the pyridoacridine ring system of the ascididemin-type marine alkaloids is presented. This approach allows for the introduction of the ring A of the alkaloids by using a simple aromatic aldehyde building block. The viability of this approach is demonstrated with the synthesis of AK37, a bioactive deaza analogue of the alkaloid ascididemin. Starting from 3-cyano-4-methylquinoline, a sequence of regioselective homolytic benzoylation, annulation of a bromopyridine ring, and radical cyclization leads to the pentacyclic ring system.
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Affiliation(s)
- Stephan Raeder
- Department of Pharmacy, Center for Drug Research, Ludwig-Maximilians University of Munich, Munich, Germany
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12
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Heteroaryl Radicals Review. ADVANCES IN HETEROCYCLIC CHEMISTRY 2010. [DOI: 10.1016/s0065-2725(10)10004-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
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13
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Higuchi K, Kawasaki T. Simple indole alkaloids and those with a nonrearranged monoterpenoid unit. Nat Prod Rep 2007; 24:843-68. [PMID: 17653362 DOI: 10.1039/b516351j] [Citation(s) in RCA: 239] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This review covers the literature on simple indole alkaloids and those with a nonrearranged monoterpenoid unit. Newly isolated alkaloids, structure determinations, total syntheses and biological activities are included.
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Affiliation(s)
- Kazuhiro Higuchi
- Meiji Pharmaceutical University, 2-522-1 Kiyose, Tokyo 204-8588, Japan
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14
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Majumdar KC, Basu PK, Chattopadhyay SK. Formation of five- and six-membered heterocyclic rings under radical cyclisation conditions. Tetrahedron 2007. [DOI: 10.1016/j.tet.2006.09.049] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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15
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Bowman WR, Storey JMD. Synthesis using aromatic homolytic substitution—recent advances. Chem Soc Rev 2007; 36:1803-22. [PMID: 18213987 DOI: 10.1039/b605183a] [Citation(s) in RCA: 247] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- W Russell Bowman
- Department of Chemistry, Loughborough University, Loughborough, Leicester, UK.
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