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Orejon D, Oh J, Preston DJ, Yan X, Sett S, Takata Y, Miljkovic N, Sefiane K. Ambient-mediated wetting on smooth surfaces. Adv Colloid Interface Sci 2024; 324:103075. [PMID: 38219342 DOI: 10.1016/j.cis.2023.103075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 11/10/2023] [Accepted: 12/22/2023] [Indexed: 01/16/2024]
Abstract
A consensus was built in the first half of the 20th century, which was further debated more than 3 decades ago, that the wettability and condensation mechanisms on smooth solid surfaces are modified by the adsorption of organic contaminants present in the environment. Recently, disagreement has formed about this topic once again, as many researchers have overlooked contamination due to its difficulty to eliminate. For example, the intrinsic wettability of rare earth oxides has been reported to be hydrophobic and non-wetting to water. These materials were subsequently shown to display dropwise condensation with steam. Nonetheless, follow on research has demonstrated that the intrinsic wettability of rare earth oxides is hydrophilic and wetting to water, and that a transition to hydrophobicity occurs in a matter of hours-to-days as a consequence of the adsorption of volatile organic compounds from the ambient environment. The adsorption mechanisms, kinetics, and selectivity, of these volatile organic compounds are empirically known to be functions of the substrate material and structure. However, these mechanisms, which govern the surface wettability, remain poorly understood. In this contribution, we introduce current research demonstrating the different intrinsic wettability of metals, rare earth oxides, and other smooth materials, showing that they are intrinsically hydrophilic. Then we provide details on research focusing on the transition from wetting (hydrophilicity) to non-wetting (hydrophobicity) on somooth surfaces due to adsorption of volatile organic compounds. A state-of-the-art figure of merit mapping the wettability of different smooth solid surfaces to ambient exposure as a function of the surface carbon content has also been developed. In addition, we analyse recent works that address these wetting transitions so to shed light on how such processes affect droplet pinning and lateral adhesion. We then conclude with objective perspectives about research on wetting to non-wetting transitions on smooth solid surfaces in an attempt to raise awareness regarding this surface contamination phenomenon within the engineering, interfacial science, and physical chemistry domains.
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Affiliation(s)
- Daniel Orejon
- School of Engineering, Institute for Multiscale Thermofluids, The University of Edinburgh, Edinburgh EH9 3FD, Scotland, UK; International Institute for Carbon-Neutral Energy Research (WPI-I2CNER), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan.
| | - Junho Oh
- Department of Mechanical Engineering, BK21 FOUR ERICA-ACE Center, Hanyang University, Ansan, Gyeonggi 15588, Republic of Korea
| | - Daniel J Preston
- Department of Mechanical Engineering, Rice University, Houston, TX 77005, USA
| | - Xiao Yan
- School of Energy and Power Engineering, Chongqing University, Chongqing 400044, China
| | - Soumyadip Sett
- Mechanical Engineering, Indian Institute of Technology Gandhinagar, Gujarat 382355, India
| | - Yasuyuki Takata
- School of Engineering, Institute for Multiscale Thermofluids, The University of Edinburgh, Edinburgh EH9 3FD, Scotland, UK; International Institute for Carbon-Neutral Energy Research (WPI-I2CNER), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Nenad Miljkovic
- International Institute for Carbon-Neutral Energy Research (WPI-I2CNER), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan; Department of Mechanical Science & Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Khellil Sefiane
- School of Engineering, Institute for Multiscale Thermofluids, The University of Edinburgh, Edinburgh EH9 3FD, Scotland, UK
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Vigneron A, Guyoneaud R, Goñi-Urriza M. Genome-Centric Metatranscriptomics Reveals Multiple Co-occurring Routes for Hydrocarbon Degradation in Chronically Contaminated Marine Microbial Mats. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:1551-1562. [PMID: 38197744 DOI: 10.1021/acs.est.3c08386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2024]
Abstract
Long-term hydrocarbon pollution is a devious threat to aquatic and marine ecosystems. However, microbial responses to chronic pollution remain poorly understood. Combining genome-centric metagenomic and metatranscriptomic analyses of microbial mat samples that experienced chronic hydrocarbon pollution for more than 80 years, we analyzed the transcriptomic activity of alkane and aromatic hydrocarbon degradation pathways at the population level. Consistent with the fluctuating and stratified redox conditions of the habitat, both aerobic and anaerobic hydrocarbon degradation pathways were expressed by taxonomically and metabolically contrasted lineages including members of Bacteroidiales, Desulfobacteraceae, Pseudomonadales; Alcanivoraceae and Halieaceae populations with (photo)-heterotrophic, sulfur- and organohalide-based metabolisms, providing evidence for the co-occurrence and activity of aerobic and anaerobic hydrocarbon degradation pathways in shallow marine microbial mats. In addition, our results suggest that aerobic alkane degradation in long-term pollution involved bacterial families that are naturally widely distributed in marine habitats, but hydrocarbon concentration and composition were found to be a strong structuring factor of their intrafamily diversity and transcriptomic activities.
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Affiliation(s)
- Adrien Vigneron
- Université de Pau et des Pays de l'Adour, E2S UPPA, CNRS, IPREM, Pau 64053, France
| | - Rémy Guyoneaud
- Université de Pau et des Pays de l'Adour, E2S UPPA, CNRS, IPREM, Pau 64053, France
| | - Marisol Goñi-Urriza
- Université de Pau et des Pays de l'Adour, E2S UPPA, CNRS, IPREM, Pau 64053, France
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Olander A, Raina JB, Lawson CA, Bartels N, Ueland M, Suggett DJ. Distinct emissions of biogenic volatile organic compounds from temperate benthic taxa. Metabolomics 2023; 20:9. [PMID: 38129550 DOI: 10.1007/s11306-023-02070-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 11/28/2023] [Indexed: 12/23/2023]
Abstract
INTRODUCTION Biogenic volatile organic compounds (BVOCs) are emitted by all organisms as intermediate or end-products of metabolic processes. Individual BVOCs perform important physiological, ecological and climatic functions, and collectively constitute the volatilome-which can be reflective of organism taxonomy and health. Although BVOC emissions of tropical benthic reef taxa have recently been the focus of multiple studies, emissions derived from their temperate counterparts have never been characterised. OBJECTIVES Characterise the volatilomes of key competitors for benthic space among Australian temperate reefs. METHODS Six fragments/fronds of a temperate coral (Plesiastrea versipora) and a macroalga (Ecklonia radiata) from a Sydney reef site were placed within modified incubation chambers filled with seawater. Organism-produced BVOCs were captured on thermal desorption tubes using a purge-and-trap methodology, and were then analysed using GC × GC - TOFMS and multivariate tests. RESULTS Analysis detected 55 and 63 BVOCs from P. versipora and E. radiata respectively, with 30 of these common between species. Each taxon was characterised by a similar relative composition of chemical classes within their volatilomes. However, 14 and 10 volatiles were distinctly emitted by either E. radiata or P. versipora respectively, including the halogenated compounds iodomethane, tribromomethane, carbon tetrachloride and trichloromonofluoromethane. While macroalgal cover was 3.7 times greater than coral cover at the sampling site, P. versipora produced on average 17 times more BVOCs per cm2 of live tissue, resulting in an estimated contribution to local BVOC emission that was 4.7 times higher than E. radiata. CONCLUSION Shifts in benthic community composition could disproportionately impact local marine chemistry and affect how ecosystems contribute to broader BVOC emissions.
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Affiliation(s)
- Axel Olander
- Climate Change Cluster, University of Technology Sydney, Broadway, NSW, 2007, Australia.
| | - Jean-Baptiste Raina
- Climate Change Cluster, University of Technology Sydney, Broadway, NSW, 2007, Australia
| | - Caitlin A Lawson
- Climate Change Cluster, University of Technology Sydney, Broadway, NSW, 2007, Australia
- School of Environmental and Life Sciences, University of Newcastle, Newcastle, NSW, Australia
| | - Natasha Bartels
- Climate Change Cluster, University of Technology Sydney, Broadway, NSW, 2007, Australia
| | - Maiken Ueland
- Centre for Forensic Science, University of Technology Sydney, Broadway, NSW, 2007, Australia
| | - David J Suggett
- Climate Change Cluster, University of Technology Sydney, Broadway, NSW, 2007, Australia
- KAUST Reefscape Restoration Initiative (KRRI) and Red Sea Research Center (RSRC), King Abdullah University of Science and Technology, 23955, Thuwal, Saudi Arabia
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Collart L, Jiang D, Halsey KH. The volatilome reveals microcystin concentration, microbial composition, and oxidative stress in a critical Oregon freshwater lake. mSystems 2023; 8:e0037923. [PMID: 37589463 PMCID: PMC10654074 DOI: 10.1128/msystems.00379-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Accepted: 07/03/2023] [Indexed: 08/18/2023] Open
Abstract
IMPORTANCE Harmful algal blooms are among the most significant threats to drinking water safety. Blooms dominated by cyanobacteria can produce potentially harmful toxins and, despite intensive research, toxin production remains unpredictable. We measured gaseous molecules in Upper Klamath Lake, Oregon, over 2 years and used them to predict the presence and concentration of the cyanotoxin, microcystin, and microbial community composition. Subsets of gaseous compounds were identified that are associated with microcystin production during oxidative stress, pointing to ecosystem-level interactions leading to microcystin contamination. Our approach shows potential for gaseous molecules to be harnessed in monitoring critical waterways.
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Affiliation(s)
- Lindsay Collart
- Department of Microbiology, Oregon State University, Corvallis, Oregon, USA
| | - Duo Jiang
- Department of Statistics, Oregon State University, Corvallis, Oregon, USA
| | - Kimberly H. Halsey
- Department of Microbiology, Oregon State University, Corvallis, Oregon, USA
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Zhao D, Yang Y, Tham YJ, Zou S. Emission of marine volatile organic compounds (VOCs) by phytoplankton- a review. MARINE ENVIRONMENTAL RESEARCH 2023; 191:106177. [PMID: 37741052 DOI: 10.1016/j.marenvres.2023.106177] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Revised: 08/30/2023] [Accepted: 09/11/2023] [Indexed: 09/25/2023]
Abstract
Oceans cover over 71% of the Earth's surface and play crucial roles in regulating the global climate. In the marine boundary layer, the levels of volatile organic compounds (VOCs) have been shown to have positive relations with the marine algal biomass, indicating that the marine biological activities can be an important biogenic VOCs (BVOCs) source. The emitted BVOCs will enhance the formation of secondary organic aerosols, and perturb the radiative forcing, which ultimately affects the climate. To date, knowledge on the emission processes (i.e., synthesis processes and emission rates) of BVOCs from marine phytoplankton is still lacking compared to the more well-known BVOCs released from terrestrial plants. In this review, we focus on the BVOCs emissions from the marine phytoplankton. Based on the available literature from field and laboratory studies, we listed the types of BVOCs being emitted by different marine phytoplankton species, summarized the diversity of BVOCs related to phytoplankton taxonomy and physiology and abiotic factors affecting their emissions in various marine environments, and discussed the biosynthesis and ecological function of important marine VOCs such as DMS, terpenoids and VHCs from phytoplankton. Finally, we highlighted the existing gaps in the current knowledge and the needs of future study for better understanding the physiological and ecological roles of BVOCs emission from marine phytoplankton.
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Affiliation(s)
- Danna Zhao
- School of Marine Sciences, Sun Yat-sen University, Zhuhai, 519082, China
| | - Ying Yang
- School of Marine Sciences, Sun Yat-sen University, Zhuhai, 519082, China; Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai, 519000, China; Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, Zhuhai, 519082, China; Pearl River Estuary Marine Ecosystem Research Station, Ministry of Education, Zhuhai, 519082, China.
| | - Yee Jun Tham
- School of Marine Sciences, Sun Yat-sen University, Zhuhai, 519082, China; Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, Zhuhai, 519082, China; Pearl River Estuary Marine Ecosystem Research Station, Ministry of Education, Zhuhai, 519082, China
| | - Shichun Zou
- School of Marine Sciences, Sun Yat-sen University, Zhuhai, 519082, China; Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai, 519000, China; Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, Zhuhai, 519082, China; Pearl River Estuary Marine Ecosystem Research Station, Ministry of Education, Zhuhai, 519082, China
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Wu YC, Gao XX, Zhang HH, Liu YZ, Wang J, Xu F, Zhang GL, Chen ZH. Characteristics and emissions of isoprene and other non-methane hydrocarbons in the Northwest Pacific Ocean and responses to atmospheric aerosol deposition. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 876:162808. [PMID: 36921853 DOI: 10.1016/j.scitotenv.2023.162808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2022] [Revised: 03/07/2023] [Accepted: 03/08/2023] [Indexed: 06/18/2023]
Abstract
Field investigations in the Northwest Pacific Ocean were carried out to determine the distributions of marine and atmospheric non-methane hydrocarbons (NMHCs), sources and environmental effects. We also conducted deck incubation experiments to investigate the effects of atmospheric aerosol deposition on NMHCs production. The marine NMHCs displayed an increasing trend from the South Equatorial Current to the Oyashio Current. The enhanced phytoplankton biomass and dissolved organic materials (DOM) content in the Kuroshio-Oyashio Extension contributed significantly to isoprene and NMHCs production compared with those in tropical waters and the North Pacific subtropical gyre. The Northwest Pacific Ocean was a significant source of atmospheric NMHCs, with average sea-to-air fluxes of 28.0 ± 38.9, 65.2 ± 73.3, 21.0 ± 26.7, 48.7 ± 62.6, 12.7 ± 15.9, 14.2 ± 16.8, and 41.7 ± 80.4 nmol m-2 d-1 for ethane, ethylene, propane, propylene, i-butane, n-butane, and isoprene, respectively. Influenced by seawater release and OH radical consumption, the atmospheric NMHCs apart from isoprene displayed upward trends with increasing latitude. The deck incubation showed that the addition of aerosols and acidic aerosols significantly boosted phytoplankton biomass, altered community structure, and accelerated the production of isoprene. However, the other six NMHCs showed no obvious responses to atmospheric aerosol deposition in the incubation experiments. In summary, ocean current movements and atmospheric deposition could influence the production and release of isoprene in the Northwest Pacific Ocean.
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Affiliation(s)
- Ying-Cui Wu
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, and Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, Ocean University of China, Qingdao 266100, China; Laboratory of Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, China
| | - Xu-Xu Gao
- College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, China
| | - Hong-Hai Zhang
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, and Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, Ocean University of China, Qingdao 266100, China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, China.
| | - Yong-Zheng Liu
- Physical Oceanography Laboratory/Institute for advanced Ocean Study, Ocean University of China, Qingdao 266100, China
| | - Jian Wang
- College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, China
| | - Feng Xu
- College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, China
| | - Gui-Ling Zhang
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, and Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, Ocean University of China, Qingdao 266100, China; Laboratory of Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.
| | - Zhao-Hui Chen
- Physical Oceanography Laboratory/Institute for advanced Ocean Study, Ocean University of China, Qingdao 266100, China
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Dominutti PA, Chevassus E, Baray JL, Jaffrezo JL, Borbon A, Colomb A, Deguillaume L, El Gdachi S, Houdier S, Leriche M, Metzger JM, Rocco M, Tulet P, Sellegri K, Freney E. Evaluation of the Sources, Precursors, and Processing of Aerosols at a High-Altitude Tropical Site. ACS EARTH & SPACE CHEMISTRY 2022; 6:2412-2431. [PMID: 36303720 PMCID: PMC9590422 DOI: 10.1021/acsearthspacechem.2c00149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 08/02/2022] [Accepted: 08/02/2022] [Indexed: 06/16/2023]
Abstract
This work presents the results from a set of aerosol- and gas-phase measurements collected during the BIO-MAÏDO field campaign in Réunion between March 8 and April 5, 2019. Several offline and online sampling devices were installed at the Maïdo Observatory (MO), a remote high-altitude site in the Southern Hemisphere, allowing the physical and chemical characterization of atmospheric aerosols and gases. The evaluation of short-lived gas-phase measurements allows us to conclude that air masses sampled during this period contained little or no anthropogenic influence. The dominance of sulfate and organic species in the submicron fraction of the aerosol is similar to that measured at other coastal sites. Carboxylic acids on PM10 showed a significant contribution of oxalic acid, a typical tracer of aqueous processed air masses, increasing at the end of the campaign. This result agrees with the positive matrix factorization analysis of the submicron organic aerosol, where more oxidized organic aerosols (MOOAs) dominated the organic aerosol with an increasing contribution toward the end of the campaign. Using a combination of air mass trajectories (model predictions), it was possible to assess the impact of aqueous phase processing on the formation of secondary organic aerosols (SOAs). Our results show how specific chemical signatures and physical properties of air masses, possibly affected by cloud processing, can be identified at Réunion. These changes in properties are represented by a shift in aerosol size distribution to large diameters and an increased contribution of secondary sulfate and organic aerosols after cloud processing.
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Affiliation(s)
- Pamela A. Dominutti
- Université
Clermont-Auvergne, CNRS, UMR 6016, Laboratoire
de Météorologie Physique (LaMP), Clermont-Ferrand 63000, France
- Université
Grenoble Alpes, UMR 5001, CNRS, IRD, Institut des Géosciences
de l’Environnement (IGE), Grenoble 38400, France
| | - Emmanuel Chevassus
- Université
Clermont-Auvergne, CNRS, UMR 6016, Laboratoire
de Météorologie Physique (LaMP), Clermont-Ferrand 63000, France
| | - Jean-Luc Baray
- Université
Clermont-Auvergne, CNRS, UMR 6016, Laboratoire
de Météorologie Physique (LaMP), Clermont-Ferrand 63000, France
| | - Jean-Luc Jaffrezo
- Université
Grenoble Alpes, UMR 5001, CNRS, IRD, Institut des Géosciences
de l’Environnement (IGE), Grenoble 38400, France
| | - Agnès Borbon
- Université
Clermont-Auvergne, CNRS, UMR 6016, Laboratoire
de Météorologie Physique (LaMP), Clermont-Ferrand 63000, France
| | - Aurèlie Colomb
- Université
Clermont-Auvergne, CNRS, UMR 6016, Laboratoire
de Météorologie Physique (LaMP), Clermont-Ferrand 63000, France
| | - Laurent Deguillaume
- Université
Clermont-Auvergne, CNRS, UMR 6016, Laboratoire
de Météorologie Physique (LaMP), Clermont-Ferrand 63000, France
| | - Samira El Gdachi
- Laboratoire
d’Aérologie (LAERO), UMR 5560, Toulouse 31400, France
- Laboratoire
de l’Atmosphère et des Cyclones (LACy), UMR 8105, Université de la Réunion, Saint-Denis de La Réunion 97744, France
| | - Stephan Houdier
- Université
Grenoble Alpes, UMR 5001, CNRS, IRD, Institut des Géosciences
de l’Environnement (IGE), Grenoble 38400, France
| | - Maud Leriche
- Université
Clermont-Auvergne, CNRS, UMR 6016, Laboratoire
de Météorologie Physique (LaMP), Clermont-Ferrand 63000, France
- Centre
pour l’étude et la simulation du climat à l’échelle
régionale, Département des sciences de la terre et de
l’atmosphère (ESCER), Université
du Québec à Montréal, Montréal H2X 3Y7, Canada
| | - Jean-Marc Metzger
- Laboratoire
de l’Atmosphère et des Cyclones (LACy), UMR 8105, Université de la Réunion, Saint-Denis de La Réunion 97744, France
| | - Manon Rocco
- Université
Clermont-Auvergne, CNRS, UMR 6016, Laboratoire
de Météorologie Physique (LaMP), Clermont-Ferrand 63000, France
- Laboratoire
de l’Atmosphère et des Cyclones (LACy), UMR 8105, Université de la Réunion, Saint-Denis de La Réunion 97744, France
| | - Pierre Tulet
- Laboratoire
d’Aérologie (LAERO), UMR 5560, Toulouse 31400, France
| | - Karine Sellegri
- Université
Clermont-Auvergne, CNRS, UMR 6016, Laboratoire
de Météorologie Physique (LaMP), Clermont-Ferrand 63000, France
| | - Evelyn Freney
- Université
Clermont-Auvergne, CNRS, UMR 6016, Laboratoire
de Météorologie Physique (LaMP), Clermont-Ferrand 63000, France
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Saha M, Fink P. Algal volatiles - the overlooked chemical language of aquatic primary producers. Biol Rev Camb Philos Soc 2022; 97:2162-2173. [PMID: 35912802 DOI: 10.1111/brv.12887] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 06/29/2022] [Accepted: 06/30/2022] [Indexed: 11/28/2022]
Abstract
Volatiles are important 'infochemicals' that play a crucial role in structuring life on our planet, fulfilling diverse functions in natural and artificial systems. Algae contribute significant quantities to the global budget of volatiles, but the ecological roles of aquatic volatiles are not well understood. In this review, we discuss the current knowledge of volatile compounds from freshwater and marine microalgae and marine macroalgae, with a focus on their ecological roles. We highlight the multiple reported functions of biogenic volatiles, ranging from intraspecific communication for reproduction, intra-bloom signalling and antioxidant functions, to various interspecific signal exchanges that may allow herbivores to locate them and function in defence against competitors and predators. Beyond reviewing our current understanding, we specifically highlight major knowledge gaps and emerging questions for algal volatile research. These novel perspectives have the potential to improve our understanding of aquatic ecosystems and thus need to be addressed in future research. Filling these gaps and addressing these questions will facilitate humanity's efforts to exploit aquatic volatiles in various applications.
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Affiliation(s)
- Mahasweta Saha
- Marine Ecology and Biodiversity, Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth, PL1 3DH, UK
| | - Patrick Fink
- Department River Ecology, Helmholtz Centre of Environmental Research - UFZ, Brückstrasse 3a, 39114, Magdeburg, Germany.,Department Aquatic Ecosystem Analysis and Management, Helmholtz Centre of Environmental Research - UFZ, Brückstrasse 3a, 39114, Magdeburg, Germany
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9
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Dani KGS, Loreto F. Plant volatiles as regulators of hormone homeostasis. THE NEW PHYTOLOGIST 2022; 234:804-812. [PMID: 35170033 DOI: 10.1111/nph.18035] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Accepted: 01/24/2022] [Indexed: 06/14/2023]
Abstract
Some canonical plant hormones such as auxins and gibberellins have precursors that are biogenic volatiles (indole, indole acetonitrile, phenylacetaldoxime and ent-kaurene). Cytokinins, abscisic acid and strigolactones are hormones comprising chemical moieties that have distinct volatile analogues, and are synthesised alongside constitutively emitted volatiles (isoprene, sesquiterpenes, lactones, benzenoids and apocarotenoid volatiles). Nonvolatile hormone analogues and biogenic volatile organic compounds (BVOCs) evolved in tandem as growth and behavioural regulators in unicellular organisms. In plants, however, nonvolatile hormones evolved as regulators of growth, development and differentiation, while endogenous BVOCs (often synthesised lifelong) became subtle regulators of hormone synthesis, availability, activity and turnover, all supported by functionally redundant components of hormone metabolism. Reciprocal changes in the abundance and activity of hormones, nitric oxide, and constitutive plant volatiles constantly bridge retrograde and anterograde signalling to maintain hormone equilibria even in unstressed plants. This is distinct from transient interference in hormone signalling by stress-induced and exogenously received volatiles.
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Affiliation(s)
- Kaidala Ganesha Srikanta Dani
- Institute of Sustainable Plant Protection, National Research Council of Italy, Via Madonna del Piano 10, Sesto Fiorentino, Florence, 50019, Italy
- Department of Biology, Agriculture and Food Sciences, National Research Council of Italy, Piazzale Aldo Moro 7, Rome, 00185, Italy
| | - Francesco Loreto
- Institute of Sustainable Plant Protection, National Research Council of Italy, Via Madonna del Piano 10, Sesto Fiorentino, Florence, 50019, Italy
- Department of Biology, University of Naples Federico II, Via Cinthia, Naples, 80126, Italy
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Tilgner A, Schaefer T, Alexander B, Barth M, Collett JL, Fahey KM, Nenes A, Pye HOT, Herrmann H, McNeill VF. Acidity and the multiphase chemistry of atmospheric aqueous particles and clouds. ATMOSPHERIC CHEMISTRY AND PHYSICS 2021; 21:10.5194/acp-21-13483-2021. [PMID: 34675968 PMCID: PMC8525431 DOI: 10.5194/acp-21-13483-2021] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
The acidity of aqueous atmospheric solutions is a key parameter driving both the partitioning of semi-volatile acidic and basic trace gases and their aqueous-phase chemistry. In addition, the acidity of atmospheric aqueous phases, e.g., deliquesced aerosol particles, cloud, and fog droplets, is also dictated by aqueous-phase chemistry. These feedbacks between acidity and chemistry have crucial implications for the tropospheric lifetime of air pollutants, atmospheric composition, deposition to terrestrial and oceanic ecosystems, visibility, climate, and human health. Atmospheric research has made substantial progress in understanding feedbacks between acidity and multiphase chemistry during recent decades. This paper reviews the current state of knowledge on these feedbacks with a focus on aerosol and cloud systems, which involve both inorganic and organic aqueous-phase chemistry. Here, we describe the impacts of acidity on the phase partitioning of acidic and basic gases and buffering phenomena. Next, we review feedbacks of different acidity regimes on key chemical reaction mechanisms and kinetics, as well as uncertainties and chemical subsystems with incomplete information. Finally, we discuss atmospheric implications and highlight the need for future investigations, particularly with respect to reducing emissions of key acid precursors in a changing world, and the need for advancements in field and laboratory measurements and model tools.
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Affiliation(s)
- Andreas Tilgner
- Atmospheric Chemistry Department (ACD), Leibniz Institute for Tropospheric Research (TROPOS), Leipzig 04318, Germany
| | - Thomas Schaefer
- Atmospheric Chemistry Department (ACD), Leibniz Institute for Tropospheric Research (TROPOS), Leipzig 04318, Germany
| | - Becky Alexander
- Department of Atmospheric Science, University of Washington, Seattle, WA 98195, USA
| | - Mary Barth
- Atmospheric Chemistry Observation & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO 80307, USA
| | - Jeffrey L. Collett
- Department of Atmospheric Science, Colorado State University, Fort Collins, CO 80523, USA
| | - Kathleen M. Fahey
- Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, Durham, NC 27711, USA
| | - Athanasios Nenes
- School of Architecture, Civil and Environmental Engineering, École Polytechnique Fédérale de Lausanne, Lausanne 1015, Switzerland
- Institute for Chemical Engineering Sciences, Foundation for Research and Technology Hellas, Patras 26504, Greece
| | - Havala O. T. Pye
- Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, Durham, NC 27711, USA
| | - Hartmut Herrmann
- Atmospheric Chemistry Department (ACD), Leibniz Institute for Tropospheric Research (TROPOS), Leipzig 04318, Germany
| | - V. Faye McNeill
- Department of Chemical Engineering, Columbia University, New York, NY 10027, USA
- Department of Earth and Environmental Sciences, Columbia University, New York, NY 10027, USA
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11
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Yu Z, Li Y. Marine volatile organic compounds and their impacts on marine aerosol-A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 768:145054. [PMID: 33736323 DOI: 10.1016/j.scitotenv.2021.145054] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Revised: 01/04/2021] [Accepted: 01/06/2021] [Indexed: 06/12/2023]
Abstract
Volatile organic compounds (VOCs) play a vital role in the global carbon budget and in the regional formation of ozone in the troposphere, and are emitted from both natural and anthropogenic activities. They can also serve as a source of secondary organic aerosol (SOA). Field and model studies showed evidences of a strong marine biogenic influence on marine aerosols. Although knowledge of terrestrial VOC emissions and SOA formation mechanisms has been advanced considerably over the last decades, processes constraining marine VOC emissions and marine SOA formation remain poorly understood. Seawater contains an extremely complex, diverse, and largely unidentified mixture of VOCs. Despite the fact that the ocean covers 70% of the Earth's surface, the role of the ocean in the global budget of VOCs is still unclear. The distribution and emission of sea surface VOCs exhibit considerable spatial-temporal variation, with higher concentrations often, but not always, correlated with biological activities. VOCs in surface seawater have been measured in various geographic regions, however, knowledge of the distribution of marine VOCs and the role of the oceans in the global atmospheric chemistry is still insufficient due to the paucity of measurements. This study reviews marine VOCs in terms of current analytical methods, global marine VOCs measurements, their effects on SOA, and future needs for understanding the role of marine VOCs in the chemistry of the atmosphere.
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Affiliation(s)
- Zhujun Yu
- Department of Ocean Science and Engineering, Southern University of Science and Technology, No. 1088 Xueyuan Blvd, Nanshan District, Shenzhen, Guangdong 518055, China
| | - Ying Li
- Department of Ocean Science and Engineering, Southern University of Science and Technology, No. 1088 Xueyuan Blvd, Nanshan District, Shenzhen, Guangdong 518055, China; Center for Oceanic and Atmospheric Science at SUSTech (COAST), Southern University of Science and Technology, Shenzhen, China.
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12
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Rubin S, Veloz T, Maldonado P. Beyond planetary-scale feedback self-regulation: Gaia as an autopoietic system. Biosystems 2020; 199:104314. [PMID: 33271251 DOI: 10.1016/j.biosystems.2020.104314] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Revised: 11/25/2020] [Accepted: 11/25/2020] [Indexed: 11/19/2022]
Abstract
The Gaia hypothesis states that the Earth is an instance of life. However, appraisals of it tend to focus on the claim that life is a feedback self-regulator that controls Earth's chemistry and climate dynamics, yet, self-regulation by feedbacks is not a definitive characteristic of living systems. Here, we consider the characterization of biological systems as autopoietic systems (causally organized to self-produce through metabolic efficient closure) and then ask whether the Gaia hypothesis is a tractable question from this standpoint. A proof-of-concept based on Chemical Organization Theory (COT) and the Zero Deficiency Theorem (ZDT) applied on a simple but representative Earth's molecular reaction network supports the thesis of Gaia as an autopoietic system. We identify the formation of self-producing organizations within the reaction network, corresponding to recognizable scenarios of Earth's history. These results provide further opportunities to discuss how the instantiation of autopoiesis at the planetary scale could manifests central features of biological phenomenon, such as autonomy and anticipation, and what this implies for the further development of the Gaia theory, Earth's climate modelling and geoengineering.
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Affiliation(s)
- Sergio Rubin
- Georges Lemaître Centre for Earth and Climate Research, Earth and Life Institute, Université catholique de Louvain, Belgium; Centro Nacional de Investigaciones Biotecnológicas, CNIB, Bolivia; Fundación para el Desarrollo Interdisciplinario de la Ciencia, la Tecnología y las Artes, DICTA, Chile.
| | - Tomas Veloz
- Fundación para el Desarrollo Interdisciplinario de la Ciencia, la Tecnología y las Artes, DICTA, Chile; Universidad Andres Bello, Departamento Ciencias Biologicas, Facultad Ciencias de la Vida, Chile; Centre Leo Apostel, Vrije Universiteit Brussel, VUB, Belgium
| | - Pedro Maldonado
- Fundación para el Desarrollo Interdisciplinario de la Ciencia, la Tecnología y las Artes, DICTA, Chile; Centre Leo Apostel, Vrije Universiteit Brussel, VUB, Belgium
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13
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Dani KGS, Torzillo G, Michelozzi M, Baraldi R, Loreto F. Isoprene Emission in Darkness by a Facultative Heterotrophic Green Alga. FRONTIERS IN PLANT SCIENCE 2020; 11:598786. [PMID: 33262779 PMCID: PMC7686029 DOI: 10.3389/fpls.2020.598786] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 10/15/2020] [Indexed: 06/02/2023]
Abstract
Isoprene is a highly reactive biogenic volatile hydrocarbon that strongly influences atmospheric oxidation chemistry and secondary organic aerosol budget. Many phytoplanktons emit isoprene like terrestrial pants. Planktonic isoprene emission is stimulated by light and heat and is seemingly dependent on photosynthesis, as in higher plants. However, prominent isoprene-emitting phytoplanktons are known to survive also as mixotrophs and heterotrophs. Chlorella vulgaris strain G-120, a unicellular green alga capable of both photoautotrophic and heterotrophic growth, was examined for isoprene emission using GC-MS and real-time PTR-MS in light (+CO2) and in darkness (+glucose). Chlorella emitted isoprene at the same rate both as a photoautotroph under light, and as an exclusive heterotroph while feeding on exogenous glucose in complete darkness. By implication, isoprene synthesis in eukaryotic phytoplankton can be fully supported by glycolytic pathways in absence of photosynthesis, which is not the case in higher plants. Isoprene emission by chlorophyll-depleted mixotrophs and heterotrophs in darkness serves unknown functions and may contribute to anomalies in oceanic isoprene estimates.
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Affiliation(s)
- K. G. Srikanta Dani
- Institute for Sustainable Plant Protection, National Research Council of Italy, Florence, Italy
- Department of Biology, Agriculture and Food Sciences, National Research Council of Italy, Rome, Italy
| | - Giuseppe Torzillo
- Institute of Bioeconomy, National Research Council of Italy, Florence, Italy
| | - Marco Michelozzi
- Institute for Biosciences and Bioresources, National Research Council of Italy, Florence, Italy
| | - Rita Baraldi
- Institute of Bioeconomy, National Research Council of Italy, Bologna, Italy
| | - Francesco Loreto
- Department of Biology, Agriculture and Food Sciences, National Research Council of Italy, Rome, Italy
- Department of Biology, University Federico II, Naples, Italy
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14
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Carrión O, McGenity TJ, Murrell JC. Molecular Ecology of Isoprene-Degrading Bacteria. Microorganisms 2020; 8:E967. [PMID: 32605141 PMCID: PMC7409078 DOI: 10.3390/microorganisms8070967] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 06/16/2020] [Accepted: 06/25/2020] [Indexed: 01/08/2023] Open
Abstract
Isoprene is a highly abundant biogenic volatile organic compound (BVOC) that is emitted to the atmosphere in amounts approximating to those of methane. The effects that isoprene has on Earth's climate are both significant and complex, however, unlike methane, very little is known about the biological degradation of this environmentally important trace gas. Here, we review the mechanisms by which bacteria catabolise isoprene, what is known about the diversity of isoprene degraders in the environment, and the molecular tools currently available to study their ecology. Specifically, we focus on the use of probes based on the gene encoding the α-subunit of isoprene monooxygenase, isoA, and DNA stable-isotope probing (DNA-SIP) alone or in combination with other cultivation-independent techniques to determine the abundance, diversity, and activity of isoprene degraders in the environment. These parameters are essential in order to evaluate how microbes might mitigate the effects of this important but neglected climate-active gas. We also suggest key aspects of isoprene metabolism that require further investigation in order to better understand the global isoprene biogeochemical cycle.
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Affiliation(s)
- Ornella Carrión
- School of Environmental Sciences, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, UK
| | - Terry J. McGenity
- School of Life Sciences, University of Essex, Colchester CO4 3SQ, UK;
| | - J. Colin Murrell
- School of Environmental Sciences, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, UK
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15
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Distribution and Drivers of Marine Isoprene Concentration across the Southern Ocean. ATMOSPHERE 2020. [DOI: 10.3390/atmos11060556] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Isoprene is a biogenic trace gas produced by terrestrial vegetation and marine phytoplankton. In the remote oceans, where secondary aerosols are mostly biogenic, marine isoprene emissions affect atmospheric chemistry and influence cloud formation and brightness. Here, we present the first compilation of new and published measurements of isoprene concentrations in the Southern Ocean and explore their distribution patterns. Surface ocean isoprene concentrations in November through April span 1 to 94 pM. A band of higher concentrations is observed around a latitude of ≈40 ∘ S and a surface sea temperature of 15 ∘ C. High isoprene also occurs in high productivity waters near islands and continental coasts. We use concurrent measurements of physical, chemical, and biological variables to explore the main potential drivers of isoprene concentration by means of paired regressions and multivariate analysis. Isoprene is best explained by phytoplankton-related variables like the concentrations of chlorophyll-a, photoprotective pigments and particulate organic matter, photosynthetic efficiency (influenced by iron availability), and the chlorophyll-a shares of most phytoplankton groups, and not by macronutrients or bacterial abundance. A simple statistical model based on chlorophyll-a concentration and a sea surface temperature discontinuity accounts for half of the variance of isoprene concentrations in surface waters of the Southern Ocean.
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16
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Hopkins FE, Suntharalingam P, Gehlen M, Andrews O, Archer SD, Bopp L, Buitenhuis E, Dadou I, Duce R, Goris N, Jickells T, Johnson M, Keng F, Law CS, Lee K, Liss PS, Lizotte M, Malin G, Murrell JC, Naik H, Rees AP, Schwinger J, Williamson P. The impacts of ocean acidification on marine trace gases and the implications for atmospheric chemistry and climate. Proc Math Phys Eng Sci 2020; 476:20190769. [PMID: 32518503 PMCID: PMC7277135 DOI: 10.1098/rspa.2019.0769] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Accepted: 03/03/2020] [Indexed: 11/12/2022] Open
Abstract
Surface ocean biogeochemistry and photochemistry regulate ocean–atmosphere fluxes of trace gases critical for Earth's atmospheric chemistry and climate. The oceanic processes governing these fluxes are often sensitive to the changes in ocean pH (or pCO2) accompanying ocean acidification (OA), with potential for future climate feedbacks. Here, we review current understanding (from observational, experimental and model studies) on the impact of OA on marine sources of key climate-active trace gases, including dimethyl sulfide (DMS), nitrous oxide (N2O), ammonia and halocarbons. We focus on DMS, for which available information is considerably greater than for other trace gases. We highlight OA-sensitive regions such as polar oceans and upwelling systems, and discuss the combined effect of multiple climate stressors (ocean warming and deoxygenation) on trace gas fluxes. To unravel the biological mechanisms responsible for trace gas production, and to detect adaptation, we propose combining process rate measurements of trace gases with longer term experiments using both model organisms in the laboratory and natural planktonic communities in the field. Future ocean observations of trace gases should be routinely accompanied by measurements of two components of the carbonate system to improve our understanding of how in situ carbonate chemistry influences trace gas production. Together, this will lead to improvements in current process model capabilities and more reliable predictions of future global marine trace gas fluxes.
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Affiliation(s)
| | - Parvadha Suntharalingam
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - Marion Gehlen
- Laboratoire des Sciences du Climat et de l'Environnement, Institut Pierre Simon Laplace, Orme des Merisiers, Gif-sur-Yvette cedex, France
| | - Oliver Andrews
- School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
| | | | - Laurent Bopp
- Laboratoire de Météorologie Dynamique, Institut Pierre-Simon Laplace, CNRS-ENS-UPMC-X, Département de Géosciences, Ecole Normale Supérieure, France.,Université Ecole Polytechnique, Sorbonne Université, Paris, France
| | - Erik Buitenhuis
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - Isabelle Dadou
- Laboratoire d'Etudes en Géophysique et Oceanographie Spatiales, University of Toulouse, Toulouse, France
| | - Robert Duce
- Department of Oceanography, Texas A&M University, College Station, TX, USA.,Department of Atmospheric Sciences, Texas A&M University, College Station, TX, USA
| | - Nadine Goris
- NORCE Climate, Bjerknes Centre for Climate Research, Bergen, Norway
| | - Tim Jickells
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - Martin Johnson
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - Fiona Keng
- Institute of Ocean and Earth Sciences (IOES), University of Malaya, Kuala Lumpur, Malaysia.,Institute of Graduate Studies (IGS), University of Malaya, Kuala Lumpur, Malaysia
| | - Cliff S Law
- National Institute of Water and Atmospheric Research, Wellington, New Zealand.,Department of Chemistry, University of Otago, Dunedin, New Zealand
| | - Kitack Lee
- Division of Environmental Science and Engineering, Pohang University of Science and Technology, Pohang, South Korea
| | - Peter S Liss
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - Martine Lizotte
- Department of Biology, Université Laval, Quebec City, Canada
| | - Gillian Malin
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - J Colin Murrell
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - Hema Naik
- CSIR-National Institute of Oceanography, Dona Paula 403004, Goa, India
| | - Andrew P Rees
- Plymouth Marine Laboratory, Prospect Place, Plymouth, UK
| | - Jörg Schwinger
- NORCE Climate, Bjerknes Centre for Climate Research, Bergen, Norway
| | - Philip Williamson
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
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17
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Moore ER, Davie‐Martin CL, Giovannoni SJ, Halsey KH. Pelagibacter
metabolism of diatom‐derived volatile organic compounds imposes an energetic tax on photosynthetic carbon fixation. Environ Microbiol 2019; 22:1720-1733. [DOI: 10.1111/1462-2920.14861] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Revised: 10/22/2019] [Accepted: 11/13/2019] [Indexed: 11/27/2022]
Affiliation(s)
- Eric R. Moore
- Department of Microbiology Oregon State University Corvallis, 354 Nash Hall Corvallis Oregon 97331
| | - Cleo L. Davie‐Martin
- Department of Microbiology Oregon State University Corvallis, 354 Nash Hall Corvallis Oregon 97331
| | - Stephen J. Giovannoni
- Department of Microbiology Oregon State University Corvallis, 354 Nash Hall Corvallis Oregon 97331
| | - Kimberly H. Halsey
- Department of Microbiology Oregon State University Corvallis, 354 Nash Hall Corvallis Oregon 97331
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18
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Ternon E, Wang Y, Coyne KJ. Small Polar Molecules: A Challenge in Marine Chemical Ecology. Molecules 2018; 24:molecules24010135. [PMID: 30602708 PMCID: PMC6337545 DOI: 10.3390/molecules24010135] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2018] [Revised: 12/21/2018] [Accepted: 12/26/2018] [Indexed: 12/17/2022] Open
Abstract
Due to increasing evidence of key chemically mediated interactions in marine ecosystems, a real interest in the characterization of the metabolites involved in such intra and interspecific interactions has emerged over the past decade. Nevertheless, only a small number of studies have succeeded in identifying the chemical structure of compounds of interest. One reason for this low success rate is the small size and extremely polar features of many of these chemical compounds. Indeed, a major challenge in the search for active metabolites is the extraction of small polar compounds from seawater. Yet, a full characterization of those metabolites is necessary to understand the interactions they mediate. In this context, the study presented here aims to provide a methodology for the characterization of highly polar, low molecular weight compounds in a seawater matrix that could provide guidance for marine ecologists in their efforts to identify active metabolites. This methodology was applied to the investigation of the chemical structure of an algicidal compound secreted by the bacteria Shewanella sp. IRI-160 that was previously shown to induce programmed cell death in dinoflagellates. The results suggest that the algicidal effects may be attributed to synergistic effects of small amines (ammonium, 4-aminobutanal) derived from the catabolization of putrescine produced in large quantities (0.05–6.5 fmol/cell) by Shewanella sp. IRI-160.
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Affiliation(s)
- Eva Ternon
- College of Earth, Ocean, and Environment, University of Delaware, 700 Pilottown Road, Lewes, DE 19958, USA.
- Université Côte d'Azur, CNRS, OCA, IRD, Géoazur, 250 rue Albert Einstein, 06560 Valbonne, France.
| | - Yanfei Wang
- College of Earth, Ocean, and Environment, University of Delaware, 700 Pilottown Road, Lewes, DE 19958, USA.
| | - Kathryn J Coyne
- College of Earth, Ocean, and Environment, University of Delaware, 700 Pilottown Road, Lewes, DE 19958, USA.
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19
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de Souza VF, Niinemets Ü, Rasulov B, Vickers CE, Duvoisin Júnior S, Araújo WL, Gonçalves JFDC. Alternative Carbon Sources for Isoprene Emission. TRENDS IN PLANT SCIENCE 2018; 23:1081-1101. [PMID: 30472998 PMCID: PMC6354897 DOI: 10.1016/j.tplants.2018.09.012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2018] [Revised: 09/03/2018] [Accepted: 09/25/2018] [Indexed: 05/07/2023]
Abstract
Isoprene and other plastidial isoprenoids are produced primarily from recently assimilated photosynthates via the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. However, when environmental conditions limit photosynthesis, a fraction of carbon for MEP pathway can come from extrachloroplastic sources. The flow of extrachloroplastic carbon depends on the species and on leaf developmental and environmental conditions. The exchange of common phosphorylated intermediates between the MEP pathway and other metabolic pathways can occur via plastidic phosphate translocators. C1 and C2 carbon intermediates can contribute to chloroplastic metabolism, including photosynthesis and isoprenoid synthesis. Integration of these metabolic processes provide an example of metabolic flexibility, and results in the synthesis of primary metabolites for plant growth and secondary metabolites for plant defense, allowing effective use of environmental resources under multiple stresses.
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Affiliation(s)
- Vinícius Fernandes de Souza
- Laboratory of Plant Physiology and Biochemistry, National Institute for Amazonian Research (INPA), Manaus, AM 69011-970, Brazil; University of Amazonas State, Manaus, AM 69050-010, Brazil
| | - Ülo Niinemets
- Department of Crop Science and Plant Biology, Estonian University of Life Sciences, Tartu 51006, Estonia; Estonian Academy of Sciences, 10130 Tallinn, Estonia
| | - Bahtijor Rasulov
- Department of Crop Science and Plant Biology, Estonian University of Life Sciences, Tartu 51006, Estonia; Institute of Technology, University of Tartu, Tartu, Estonia
| | - Claudia E Vickers
- Australian Institute for Bioengineering and Nanotechnology, University of Queensland, St Lucia, QLD 4072, Australia; Commonwealth Scientific and Industrial Research Organisation (CSIRO) Synthetic Biology Future Science Platform, EcoSciences Precinct, Brisbane, QLD 4001, Australia
| | | | - Wagner L Araújo
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil
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20
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Microbial cycling of isoprene, the most abundantly produced biological volatile organic compound on Earth. ISME JOURNAL 2018; 12:931-941. [PMID: 29463892 PMCID: PMC5864225 DOI: 10.1038/s41396-018-0072-6] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2017] [Revised: 09/26/2017] [Accepted: 12/12/2017] [Indexed: 01/28/2023]
Abstract
Isoprene (2-methyl-1,3-butadiene), the most abundantly produced biogenic volatile organic compound (BVOC) on Earth, is highly reactive and can have diverse and often detrimental atmospheric effects, which impact on climate and health. Most isoprene is produced by terrestrial plants, but (micro)algal production is important in aquatic environments, and the relative bacterial contribution remains unknown. Soils are a sink for isoprene, and bacteria that can use isoprene as a carbon and energy source have been cultivated and also identified using cultivation-independent methods from soils, leaves and coastal/marine environments. Bacteria belonging to the Actinobacteria are most frequently isolated and identified, and Proteobacteria have also been shown to degrade isoprene. In the freshwater-sediment isolate, Rhodococcus strain AD45, initial oxidation of isoprene to 1,2-epoxy-isoprene is catalyzed by a multicomponent isoprene monooxygenase encoded by the genes isoABCDEF. The resultant epoxide is converted to a glutathione conjugate by a glutathione S-transferase encoded by isoI, and further degraded by enzymes encoded by isoGHJ. Genome sequence analysis of actinobacterial isolates belonging to the genera Rhodococcus, Mycobacterium and Gordonia has revealed that isoABCDEF and isoGHIJ are linked in an operon, either on a plasmid or the chromosome. In Rhodococcus strain AD45 both isoprene and epoxy-isoprene induce a high level of transcription of 22 contiguous genes, including isoABCDEF and isoGHIJ. Sequence analysis of the isoA gene, encoding the large subunit of the oxygenase component of isoprene monooxygenase, from isolates has facilitated the development of PCR primers that are proving valuable in investigating the ecology of uncultivated isoprene-degrading bacteria.
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21
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Flux of the biogenic volatiles isoprene and dimethyl sulfide from an oligotrophic lake. Sci Rep 2018; 8:630. [PMID: 29330538 PMCID: PMC5766545 DOI: 10.1038/s41598-017-18923-5] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2017] [Accepted: 12/06/2017] [Indexed: 01/08/2023] Open
Abstract
Biogenic volatile organic compounds (BVOCs) affect atmospheric chemistry, climate and regional air quality in terrestrial and marine atmospheres. Although isoprene is a major BVOC produced in vascular plants, and marine phototrophs release dimethyl sulfide (DMS), lakes have been widely ignored for their production. Here we demonstrate that oligotrophic Lake Constance, a model for north temperate deep lakes, emits both volatiles to the atmosphere. Depth profiles indicated that highest concentrations of isoprene and DMS were associated with the chlorophyll maximum, suggesting that their production is closely linked to phototrophic processes. Significant correlations of the concentration patterns with taxon-specific fluorescence data, and measurements from algal cultures confirmed the phototrophic production of isoprene and DMS. Diurnal fluctuations in lake isoprene suggested an unrecognised physiological role in environmental acclimation similar to the antioxidant function of isoprene that has been suggested for marine biota. Flux estimations demonstrated that lakes are a currently undocumented source of DMS and isoprene to the atmosphere. Lakes may be of increasing importance for their contribution of isoprene and DMS to the atmosphere in the arctic zone where lake area coverage is high but terrestrial sources of BVOCs are small.
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22
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Holopainen JK, Kivimäenpää M, Nizkorodov SA. Plant-derived Secondary Organic Material in the Air and Ecosystems. TRENDS IN PLANT SCIENCE 2017; 22:744-753. [PMID: 28789922 DOI: 10.1016/j.tplants.2017.07.004] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2017] [Revised: 06/25/2017] [Accepted: 07/07/2017] [Indexed: 05/24/2023]
Abstract
Biogenic secondary organic aerosol (SOA) and deposited secondary organic material (SOM) are formed by oxidation of volatile organic compounds (VOCs) emitted by plants. Many SOA compounds have much longer chemical lifetimes than the original VOC, and may accumulate on plant surfaces and in soil as SOM because of their low volatility. This suggests that they may have important and presently unrecognized roles in plant adaptation. Using reactive plant terpenoids as a model we propose a three-tier (atmosphere-vegetation-soil) framework to better understand the ecological and evolutionary functions of SOM. In this framework, SOA in the atmosphere is known to affect solar radiation, SOM on the plant surfaces influences the interactive organisms, and wet and dry deposition of SOM on soil affects soil organisms.
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Affiliation(s)
- J K Holopainen
- Department of Environmental and Biological Sciences, University of Eastern Finland, FI-70211 Kuopio, Finland.
| | - M Kivimäenpää
- Department of Environmental and Biological Sciences, University of Eastern Finland, FI-70211 Kuopio, Finland
| | - S A Nizkorodov
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, CA 92697-2025, USA; Department of Applied Physics, University of Eastern Finland, FI-70211 Kuopio, Finland
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23
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Achyuthan KE, Harper JC, Manginell RP, Moorman MW. Volatile Metabolites Emission by In Vivo Microalgae-An Overlooked Opportunity? Metabolites 2017; 7:E39. [PMID: 28788107 PMCID: PMC5618324 DOI: 10.3390/metabo7030039] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2017] [Revised: 07/19/2017] [Accepted: 07/25/2017] [Indexed: 01/04/2023] Open
Abstract
Fragrances and malodors are ubiquitous in the environment, arising from natural and artificial processes, by the generation of volatile organic compounds (VOCs). Although VOCs constitute only a fraction of the metabolites produced by an organism, the detection of VOCs has a broad range of civilian, industrial, military, medical, and national security applications. The VOC metabolic profile of an organism has been referred to as its 'volatilome' (or 'volatome') and the study of volatilome/volatome is characterized as 'volatilomics', a relatively new category in the 'omics' arena. There is considerable literature on VOCs extracted destructively from microalgae for applications such as food, natural products chemistry, and biofuels. VOC emissions from living (in vivo) microalgae too are being increasingly appreciated as potential real-time indicators of the organism's state of health (SoH) along with their contributions to the environment and ecology. This review summarizes VOC emissions from in vivo microalgae; tools and techniques for the collection, storage, transport, detection, and pattern analysis of VOC emissions; linking certain VOCs to biosynthetic/metabolic pathways; and the role of VOCs in microalgae growth, infochemical activities, predator-prey interactions, and general SoH.
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Affiliation(s)
- Komandoor E Achyuthan
- Nano and Microsensors Department, Sandia National Laboratories, Albuquerque, NM 87185, USA.
| | - Jason C Harper
- Bioenergy and Defense Technology Department, Sandia National Laboratories, Albuquerque, NM 87185, USA.
| | - Ronald P Manginell
- Nano and Microsensors Department, Sandia National Laboratories, Albuquerque, NM 87185, USA.
| | - Matthew W Moorman
- Nano and Microsensors Department, Sandia National Laboratories, Albuquerque, NM 87185, USA.
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Haworth M, Catola S, Marino G, Brunetti C, Michelozzi M, Riggi E, Avola G, Cosentino SL, Loreto F, Centritto M. Moderate Drought Stress Induces Increased Foliar Dimethylsulphoniopropionate (DMSP) Concentration and Isoprene Emission in Two Contrasting Ecotypes of Arundo donax. FRONTIERS IN PLANT SCIENCE 2017; 8:1016. [PMID: 28659959 PMCID: PMC5468454 DOI: 10.3389/fpls.2017.01016] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2017] [Accepted: 05/26/2017] [Indexed: 05/14/2023]
Abstract
The function of dimethylsulphoniopropionate (DMSP) in plants is unclear. It has been proposed as an antioxidant, osmolyte and overflow for excess energy under stress conditions. The formation of DMSP is part of the methionine (MET) pathway that is involved in plant stress responses. We used a new analytical approach to accurately quantify the changes in DMSP concentration that occurred in two ecotypes of the biomass crop Arundo donax subject to moderate drought stress under field conditions. The ecotypes of A. donax were from a hot semi-arid habitat in Morocco and a warm-humid environment in Central Italy. The Moroccan ecotype showed more pronounced reductions in photosynthesis, stomatal conductance and photochemical electron transport than the Italian ecotype. An increase in isoprene emission occurred in both ecotypes alongside enhanced foliar concentrations of DMSP, indicative of a protective function of these two metabolites in the amelioration of the deleterious effects of excess energy and oxidative stress. This is consistent with the modification of carbon within the methyl-erythritol and MET pathways responsible for increased synthesis of isoprene and DMSP under moderate drought. The results of this study indicate that DMSP is an important adaptive component of the stress response regulated via the MET pathway in A. donax. DMSP is likely a multifunctional molecule playing a number of roles in the response of A. donax to reduced water availability.
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Affiliation(s)
- Matthew Haworth
- Tree and Timber Institute, National Research CouncilSesto Fiorentino, Italy
| | - Stefano Catola
- Tree and Timber Institute, National Research CouncilSesto Fiorentino, Italy
| | - Giovanni Marino
- Tree and Timber Institute, National Research CouncilSesto Fiorentino, Italy
| | - Cecilia Brunetti
- Tree and Timber Institute, National Research CouncilSesto Fiorentino, Italy
- Department of Agrifood Production and Environmental Sciences, University of FlorenceSesto Fiorentino, Italy
| | - Marco Michelozzi
- Institute of Biosciences and Bioresources, National Research CouncilSesto Fiorentino, Italy
| | - Ezio Riggi
- Tree and Timber Institute, National Research CouncilSesto Fiorentino, Italy
| | - Giovanni Avola
- Tree and Timber Institute, National Research CouncilSesto Fiorentino, Italy
| | - Salvatore L. Cosentino
- Dipartimento di Agricoltura, Alimentazione e Ambiente, Università degli Studi di CataniaCatania, Italy
| | - Francesco Loreto
- Department of Biology, Agriculture and Food Sciences, National Research CouncilRome, Italy
| | - Mauro Centritto
- Tree and Timber Institute, National Research CouncilSesto Fiorentino, Italy
- *Correspondence: Mauro Centritto,
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