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Rutschmann A, Perry C, Le Galliard JF, Dupoué A, Lourdais O, Guillon M, Brusch G, Cote J, Richard M, Clobert J, Miles DB. Ecological responses of squamate reptiles to nocturnal warming. Biol Rev Camb Philos Soc 2024; 99:598-621. [PMID: 38062628 DOI: 10.1111/brv.13037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 11/27/2023] [Accepted: 11/27/2023] [Indexed: 03/06/2024]
Abstract
Nocturnal temperatures are increasing at a pace exceeding diurnal temperatures in most parts of the world. The role of warmer nocturnal temperatures in animal ecology has received scant attention and most studies focus on diurnal or daily descriptors of thermal environments' temporal trends. Yet, available evidence from plant and insect studies suggests that organisms can exhibit contrasting physiological responses to diurnal and nocturnal warming. Limiting studies to diurnal trends can thus result in incomplete and misleading interpretations of the ability of species to cope with global warming. Although they are expected to be impacted by warmer nocturnal temperatures, insufficient data are available regarding the night-time ecology of vertebrate ectotherms. Here, we illustrate the complex effects of nocturnal warming on squamate reptiles, a keystone group of vertebrate ectotherms. Our review includes discussion of diurnal and nocturnal ectotherms, but we mainly focus on diurnal species for which nocturnal warming affects a period dedicated to physiological recovery, and thus may perturb activity patterns and energy balance. We first summarise the physical consequences of nocturnal warming on habitats used by squamate reptiles. Second, we describe how such changes can alter the energy balance of diurnal species. We illustrate this with empirical data from the asp viper (Vipera aspis) and common wall lizard (Podarcis muralis), two diurnal species found throughout western Europe. Third, we make use of a mechanistic approach based on an energy-balance model to draw general conclusions about the effects of nocturnal temperatures. Fourth, we examine how warmer nights may affect squamates over their lifetime, with potential consequences on individual fitness and population dynamics. We review quantitative evidence for such lifetime effects using recent data derived from a range of studies on the European common lizard (Zootoca vivipara). Finally, we consider the broader eco-evolutionary ramifications of nocturnal warming and highlight several research questions that require future attention. Our work emphasises the importance of considering the joint influence of diurnal and nocturnal warming on the responses of vertebrate ectotherms to climate warming.
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Affiliation(s)
- Alexis Rutschmann
- Station d'Ecologie Théorique et Expérimentale de Moulis, CNRS UAR2029, 02 route du CNRS, Moulis, 09200, France
| | - Constant Perry
- Station d'Ecologie Théorique et Expérimentale de Moulis, CNRS UAR2029, 02 route du CNRS, Moulis, 09200, France
| | - Jean-François Le Galliard
- Sorbonne Université, CNRS, UMR 7618, IRD, INRAE, Institut d'écologie et des sciences de l'environnement (iEES Paris), Tours 44-45, 4 Place Jussieu, Paris, 75005, France
- Département de Biologie, Ecole Normale Supérieure, PSL Research University, CNRS, UMS 3194, Centre de Recherche en écologie expérimentale et Prédictive (CEREEP-Ecotron IleDeFrance), 78 rue du château, Saint-Pierre-Lès-Nemours, 77140, France
| | - Andréaz Dupoué
- Ifremer, Univ Brest, CNRS, IRD, UMR 6539, LEMAR, 1625 Rte de Sainte-Anne, Plouzané, 29280, France
| | - Olivier Lourdais
- Centre d'Etudes Biologiques de Chizé, CNRS UMR 7372-Université de La Rochelle, 405 Route de Prissé la Charrière, Villiers-en-Bois, 79630, France
- School of Life Sciences, Arizona State University, Life Sciences Center Building, 427E Tyler Mall, Tempe, AZ, 85281, USA
| | - Michaël Guillon
- Centre d'Etudes Biologiques de Chizé, CNRS UMR 7372-Université de La Rochelle, 405 Route de Prissé la Charrière, Villiers-en-Bois, 79630, France
- Cistude Nature, Chemin du Moulinat-33185, Le Haillan, France
| | - George Brusch
- Department of Biological Sciences, California State University San Marcos, 333 S. Twin Oaks Valley Rd., San Marcos, CA, 92096, USA
| | - Julien Cote
- Laboratoire Evolution et Diversité Biologique (EDB), UMR5174, Université Toulouse 3 Paul Sabatier, CNRS, IRD, 118 Rte de Narbonne, Toulouse, 31077, France
| | - Murielle Richard
- Station d'Ecologie Théorique et Expérimentale de Moulis, CNRS UAR2029, 02 route du CNRS, Moulis, 09200, France
| | - Jean Clobert
- Station d'Ecologie Théorique et Expérimentale de Moulis, CNRS UAR2029, 02 route du CNRS, Moulis, 09200, France
| | - Donald B Miles
- Department of Biological Sciences, 131 Life Science Building, Ohio University, Athens, OH, 45701, USA
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Chen X, Zhao C, Yun P, Yu M, Zhou M, Chen ZH, Shabala S. Climate-resilient crops: Lessons from xerophytes. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 117:1815-1835. [PMID: 37967090 DOI: 10.1111/tpj.16549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 10/30/2023] [Accepted: 11/05/2023] [Indexed: 11/17/2023]
Abstract
Developing climate-resilient crops is critical for future food security and sustainable agriculture under current climate scenarios. Of specific importance are drought and soil salinity. Tolerance traits to these stresses are highly complex, and the progress in improving crop tolerance is too slow to cope with the growing demand in food production unless a major paradigm shift in crop breeding occurs. In this work, we combined bioinformatics and physiological approaches to compare some of the key traits that may differentiate between xerophytes (naturally drought-tolerant plants) and mesophytes (to which the majority of the crops belong). We show that both xerophytes and salt-tolerant mesophytes have a much larger number of copies in key gene families conferring some of the key traits related to plant osmotic adjustment, abscisic acid (ABA) sensing and signalling, and stomata development. We show that drought and salt-tolerant species have (i) higher reliance on Na for osmotic adjustment via more diversified and efficient operation of Na+ /H+ tonoplast exchangers (NHXs) and vacuolar H+ - pyrophosphatase (VPPases); (ii) fewer and faster stomata; (iii) intrinsically lower ABA content; (iv) altered structure of pyrabactin resistance/pyrabactin resistance-like (PYR/PYL) ABA receptors; and (v) higher number of gene copies for protein phosphatase 2C (PP2C) and sucrose non-fermenting 1 (SNF1)-related protein kinase 2/open stomata 1 (SnRK2/OST1) ABA signalling components. We also show that the past trends in crop breeding for Na+ exclusion to improve salinity stress tolerance are counterproductive and compromise their drought tolerance. Incorporating these genetic insights into breeding practices could pave the way for more drought-tolerant and salt-resistant crops, securing agricultural yields in an era of climate unpredictability.
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Affiliation(s)
- Xi Chen
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, 528000, China
- School of Biological Sciences, University of Western Australia, Crawley, Western Australia, 6009, Australia
| | - Chenchen Zhao
- Tasmanian Institute of Agriculture, University of Tasmania, Prospect, Tasmania, 7250, Australia
| | - Ping Yun
- School of Biological Sciences, University of Western Australia, Crawley, Western Australia, 6009, Australia
| | - Min Yu
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, 528000, China
- School of Biological Sciences, University of Western Australia, Crawley, Western Australia, 6009, Australia
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, University of Tasmania, Prospect, Tasmania, 7250, Australia
| | - Zhong-Hua Chen
- School of Science, Western Sydney University, Penrith, New South Wales, 2751, Australia
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, New South Wales, 2751, Australia
| | - Sergey Shabala
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, 528000, China
- School of Biological Sciences, University of Western Australia, Crawley, Western Australia, 6009, Australia
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3
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Janni M, Maestri E, Gullì M, Marmiroli M, Marmiroli N. Plant responses to climate change, how global warming may impact on food security: a critical review. FRONTIERS IN PLANT SCIENCE 2024; 14:1297569. [PMID: 38250438 PMCID: PMC10796516 DOI: 10.3389/fpls.2023.1297569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 12/14/2023] [Indexed: 01/23/2024]
Abstract
Global agricultural production must double by 2050 to meet the demands of an increasing world human population but this challenge is further exacerbated by climate change. Environmental stress, heat, and drought are key drivers in food security and strongly impacts on crop productivity. Moreover, global warming is threatening the survival of many species including those which we rely on for food production, forcing migration of cultivation areas with further impoverishing of the environment and of the genetic variability of crop species with fall out effects on food security. This review considers the relationship of climatic changes and their bearing on sustainability of natural and agricultural ecosystems, as well as the role of omics-technologies, genomics, proteomics, metabolomics, phenomics and ionomics. The use of resource saving technologies such as precision agriculture and new fertilization technologies are discussed with a focus on their use in breeding plants with higher tolerance and adaptability and as mitigation tools for global warming and climate changes. Nevertheless, plants are exposed to multiple stresses. This study lays the basis for the proposition of a novel research paradigm which is referred to a holistic approach and that went beyond the exclusive concept of crop yield, but that included sustainability, socio-economic impacts of production, commercialization, and agroecosystem management.
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Affiliation(s)
- Michela Janni
- Institute of Bioscience and Bioresources (IBBR), National Research Council (CNR), Bari, Italy
- Institute of Materials for Electronics and Magnetism (IMEM), National Research Council (CNR), Parma, Italy
| | - Elena Maestri
- Department of Chemistry, Life Sciences and Environmental Sustainability, Interdepartmental Centers SITEIA.PARMA and CIDEA, University of Parma, Parma, Italy
| | - Mariolina Gullì
- Department of Chemistry, Life Sciences and Environmental Sustainability, Interdepartmental Centers SITEIA.PARMA and CIDEA, University of Parma, Parma, Italy
| | - Marta Marmiroli
- Department of Chemistry, Life Sciences and Environmental Sustainability, Interdepartmental Centers SITEIA.PARMA and CIDEA, University of Parma, Parma, Italy
| | - Nelson Marmiroli
- Consorzio Interuniversitario Nazionale per le Scienze Ambientali (CINSA) Interuniversity Consortium for Environmental Sciences, Parma/Venice, Italy
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Cox DTC, Gaston KJ. Ecosystem functioning across the diel cycle in the Anthropocene. Trends Ecol Evol 2024; 39:31-40. [PMID: 37723017 DOI: 10.1016/j.tree.2023.08.013] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Revised: 08/18/2023] [Accepted: 08/22/2023] [Indexed: 09/20/2023]
Abstract
Given the marked differences in environmental conditions and active biota between daytime and nighttime, it is almost inevitable that ecosystem functioning will also differ. However, understanding of these differences has been hampered due to the challenges of conducting research at night. At the same time, many anthropogenic pressures are most forcefully exerted or have greatest effect during either daytime (e.g., high temperatures, disturbance) or nighttime (e.g., artificial lighting, nights warming faster than days). Here, we explore current understanding of diel (daily) variation in five key ecosystem functions and when during the diel cycle they primarily occur [predation (unclear), herbivory (nighttime), pollination (daytime), seed dispersal (unclear), carbon assimilation (daytime)] and how diel asymmetry in anthropogenic pressures impacts these functions.
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Affiliation(s)
- Daniel T C Cox
- Environment and Sustainability Institute, University of Exeter, Penryn, TR10 9FE, UK.
| | - Kevin J Gaston
- Environment and Sustainability Institute, University of Exeter, Penryn, TR10 9FE, UK
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5
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Liu M, Zhou Y, Sun J, Mao F, Yao Q, Li B, Wang Y, Gao Y, Dong X, Liao S, Wang P, Huang S. From the floret to the canopy: High temperature tolerance during flowering. PLANT COMMUNICATIONS 2023; 4:100629. [PMID: 37226443 PMCID: PMC10721465 DOI: 10.1016/j.xplc.2023.100629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 04/29/2023] [Accepted: 05/22/2023] [Indexed: 05/26/2023]
Abstract
Heat waves induced by climate warming have become common in food-producing regions worldwide, frequently coinciding with high temperature (HT)-sensitive stages of many crops and thus threatening global food security. Understanding the HT sensitivity of reproductive organs is currently of great interest for increasing seed set. The responses of seed set to HT involve multiple processes in both male and female reproductive organs, but we currently lack an integrated and systematic summary of these responses for the world's three leading food crops (rice, wheat, and maize). In the present work, we define the critical high temperature thresholds for seed set in rice (37.2°C ± 0.2°C), wheat (27.3°C ± 0.5°C), and maize (37.9°C ± 0.4°C) during flowering. We assess the HT sensitivity of these three cereals from the microspore stage to the lag period, including effects of HT on flowering dynamics, floret growth and development, pollination, and fertilization. Our review synthesizes existing knowledge about the effects of HT stress on spikelet opening, anther dehiscence, pollen shedding number, pollen viability, pistil and stigma function, pollen germination on the stigma, and pollen tube elongation. HT-induced spikelet closure and arrest of pollen tube elongation have a catastrophic effect on pollination and fertilization in maize. Rice benefits from pollination under HT stress owing to bottom anther dehiscence and cleistogamy. Cleistogamy and secondary spikelet opening increase the probability of pollination success in wheat under HT stress. However, cereal crops themselves also have protective measures under HT stress. Lower canopy/tissue temperatures compared with air temperatures indicate that cereal crops, especially rice, can partly protect themselves from heat damage. In maize, husk leaves reduce inner ear temperature by about 5°C compared with outer ear temperature, thereby protecting the later phases of pollen tube growth and fertilization processes. These findings have important implications for accurate modeling, optimized crop management, and breeding of new varieties to cope with HT stress in the most important staple crops.
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Affiliation(s)
- Mayang Liu
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Yuhan Zhou
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Jiaxin Sun
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Fen Mao
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Qian Yao
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Baole Li
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Yuanyuan Wang
- College of Agronomy, South China Agricultural University, Guangdong, China
| | - Yingbo Gao
- Shandong Academy of Agricultural Sciences, Jinan, China
| | - Xin Dong
- Chongqing Academy of Agricultural Sciences, Chongqing, China
| | - Shuhua Liao
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Pu Wang
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Shoubing Huang
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
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McAusland L, Acevedo‐Siaca LG, Pinto RS, Pinto F, Molero G, Garatuza‐Payan J, Reynolds MP, Murchie EH, Yepez EA. Night-time warming in the field reduces nocturnal stomatal conductance and grain yield but does not alter daytime physiological responses. THE NEW PHYTOLOGIST 2023; 239:1622-1636. [PMID: 37430457 PMCID: PMC10952344 DOI: 10.1111/nph.19075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 05/11/2023] [Indexed: 07/12/2023]
Abstract
Global nocturnal temperatures are rising more rapidly than daytime temperatures and have a large effect on crop productivity. In particular, stomatal conductance at night (gsn ) is surprisingly poorly understood and has not been investigated despite constituting a significant proportion of overall canopy water loss. Here, we present the results of 3 yr of field data using 12 spring Triticum aestivum genotypes which were grown in NW Mexico and subjected to an artificial increase in night-time temperatures of 2°C. Under nocturnal heating, grain yields decreased (1.9% per 1°C) without significant changes in daytime leaf-level physiological responses. Under warmer nights, there were significant differences in the magnitude and decrease in gsn , values of which were between 9 and 33% of daytime rates while respiration appeared to acclimate to higher temperatures. Decreases in grain yield were genotype-specific; genotypes categorised as heat tolerant demonstrated some of the greatest declines in yield in response to warmer nights. We conclude the essential components of nocturnal heat tolerance in wheat are uncoupled from resilience to daytime temperatures, raising fundamental questions for physiological breeding. Furthermore, this study discusses key physiological traits such as pollen viability, root depth and irrigation type may also play a role in genotype-specific nocturnal heat tolerance.
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Affiliation(s)
- Lorna McAusland
- Division of Plant and Crop Sciences, School of BiosciencesUniversity of NottinghamLeicestershireLE12 5RDUK
| | - Liana G. Acevedo‐Siaca
- International Maize and Wheat Improvement Centre (CIMMYT)Carretera México‐Veracruz Km 45, El Batán, TexcocoMéxicoCP 56237Mexico
| | - R. Suzuky Pinto
- Instituto Tecnológico de Sonora (ITSON)5 de Febrero 818 Sur, Col. Centro, Cd. Obregón, SonoraMéxicoCP 85000Mexico
| | - Francisco Pinto
- International Maize and Wheat Improvement Centre (CIMMYT)Carretera México‐Veracruz Km 45, El Batán, TexcocoMéxicoCP 56237Mexico
| | - Gemma Molero
- International Maize and Wheat Improvement Centre (CIMMYT)Carretera México‐Veracruz Km 45, El Batán, TexcocoMéxicoCP 56237Mexico
| | - Jaime Garatuza‐Payan
- Instituto Tecnológico de Sonora (ITSON)5 de Febrero 818 Sur, Col. Centro, Cd. Obregón, SonoraMéxicoCP 85000Mexico
| | - Matthew P. Reynolds
- International Maize and Wheat Improvement Centre (CIMMYT)Carretera México‐Veracruz Km 45, El Batán, TexcocoMéxicoCP 56237Mexico
| | - Erik H. Murchie
- Division of Plant and Crop Sciences, School of BiosciencesUniversity of NottinghamLeicestershireLE12 5RDUK
| | - Enrico A. Yepez
- Instituto Tecnológico de Sonora (ITSON)5 de Febrero 818 Sur, Col. Centro, Cd. Obregón, SonoraMéxicoCP 85000Mexico
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López D, Larama G, Sáez PL, Bravo LA. Transcriptome Analysis of Diurnal and Nocturnal-Warmed Plants, the Molecular Mechanism Underlying Cold Deacclimation Response in Deschampsia antarctica. Int J Mol Sci 2023; 24:11211. [PMID: 37446390 DOI: 10.3390/ijms241311211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Revised: 05/05/2023] [Accepted: 05/07/2023] [Indexed: 07/15/2023] Open
Abstract
Warming in the Antarctic Peninsula is one of the fastest on earth, and is predicted to become more asymmetric in the near future. Warming has already favored the growth and reproduction of Antarctic plant species, leading to a decrease in their freezing tolerance (deacclimation). Evidence regarding the effects of diurnal and nocturnal warming on freezing tolerance-related gene expression in D. antarctica is negligible. We hypothesized that freezing tolerance-related gene (such as CBF-regulon) expression is reduced mainly by nocturnal warming rather than diurnal temperature changes in D. antarctica. The present work aimed to determine the effects of diurnal and nocturnal warming on cold deacclimation and its associated gene expression in D. antarctica, under laboratory conditions. Fully cold-acclimated plants (8 °C/0 °C), with 16h/8h thermoperiod and photoperiod duration, were assigned to four treatments for 14 days: one control (8 °C/0 °C) and three with different warming conditions (diurnal (14 °C/0 °C), nocturnal (8 °C/6 °C), and diurnal-nocturnal (14 °C/6 °C). RNA-seq was performed and differential gene expression was analyzed. Nocturnal warming significantly down-regulated the CBF transcription factors expression and associated cold stress response genes and up-regulated photosynthetic and growth promotion genes. Consequently, nocturnal warming has a greater effect than diurnal warming on the cold deacclimation process in D. antarctica. The eco-physiological implications are discussed.
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Affiliation(s)
- Dariel López
- Departamento de Ciencias Agronómicas y Recursos Naturales, Facultad de Ciencias Agropecuarias y Medioambiente and Center of Plant, Soil Interactions and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4811230, Chile
| | - Giovanni Larama
- Biocontrol Research Laboratory and Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4811230, Chile
| | - Patricia L Sáez
- Departamento de Ciencias Agronómicas y Recursos Naturales, Facultad de Ciencias Agropecuarias y Medioambiente and Center of Plant, Soil Interactions and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4811230, Chile
| | - León A Bravo
- Departamento de Ciencias Agronómicas y Recursos Naturales, Facultad de Ciencias Agropecuarias y Medioambiente and Center of Plant, Soil Interactions and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4811230, Chile
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8
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Tougeron K, Sanders D. Combined light pollution and night warming as a novel threat to ecosystems. Trends Ecol Evol 2023:S0169-5347(23)00134-9. [PMID: 37286418 DOI: 10.1016/j.tree.2023.05.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Revised: 05/17/2023] [Accepted: 05/18/2023] [Indexed: 06/09/2023]
Abstract
Artificial light at night (ALAN) and night-time warming (NW) are a combined threat altering the night-time environment and the behaviour and physiology of organisms. Impacts on fitness and the nocturnal niche have knock-on effects for ecosystem structure and function. Understanding the way both stressors interact is critical for making ecological predictions.
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Affiliation(s)
- Kévin Tougeron
- Institut de Recherche en Biosciences, Département de Biologie, EICG Laboratory, Université de Mons, Mons, Belgium; UMR 7058 CNRS EDYSAN, Université de Picardie Jules Verne, Amiens, France.
| | - Dirk Sanders
- Environment and Sustainability Institute, University of Exeter, Penryn Campus, Penryn, Cornwall, UK
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Bauerle WL, Hazlett M. Humulus lupulus L. Strobilus In Situ Photosynthesis and Respiration Temperature Responses. PLANTS (BASEL, SWITZERLAND) 2023; 12:2030. [PMID: 37653947 PMCID: PMC10223736 DOI: 10.3390/plants12102030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Revised: 05/12/2023] [Accepted: 05/16/2023] [Indexed: 09/02/2023]
Abstract
The primary metabolism and respiration of the hop strobilus has not been quantified in response to daily temperature fluctuations. The objective of this study was to assess strobilus gas exchange, specifically the response to temperature fluctuations. Hop strobilus were measured under controlled environment conditions to assess the organ's contribution to carbon assimilation and respiration during the maturation phase. Strobilus-specific daily carbon budgets were estimated in response to temperature fluctuation. The optimal temperature for net carbon gain occurred at 15.7 °C. Estimated strobilus carbon uptake decreased approximately 41% per 5 °C increase in temperature above 20 °C. Daily temperatures within 10-27 °C resulted in a net positive strobilus daily carbon balance, whereas temperature increases beyond 27 °C increasingly exhaust strobilus carbon reserves. The Q10 temperature coefficient (the rate respiration increases every 10 °C rise in temperature) approximately doubled per 10 °C rise in temperature from 7-40 °C (1.94-2) with slightly reduced values at lower temperatures. In conclusion, we show that photosynthetically active bracts maintain a positive strobilus carbon balance at moderate temperatures and as mean daily temperatures progressively exceed 27 °C, strobilus net carbon reserves are precipitously exhausted due to ever-increasing respiration rates.
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Affiliation(s)
- William L. Bauerle
- Department of Horticulture and Landscape Architecture, Colorado State University, Fort Collins, CO 80523, USA;
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Guo Z, Still CJ, Lee CKF, Ryu Y, Blonder B, Wang J, Bonebrake TC, Hughes A, Li Y, Yeung HCH, Zhang K, Law YK, Lin Z, Wu J. Does plant ecosystem thermoregulation occur? An extratropical assessment at different spatial and temporal scales. THE NEW PHYTOLOGIST 2023; 238:1004-1018. [PMID: 36495263 DOI: 10.1111/nph.18632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Accepted: 11/11/2022] [Indexed: 06/17/2023]
Abstract
To what degree plant ecosystems thermoregulate their canopy temperature (Tc ) is critical to assess ecosystems' metabolisms and resilience with climate change, but remains controversial, with opinions from no to moderate thermoregulation capability. With global datasets of Tc , air temperature (Ta ), and other environmental and biotic variables from FLUXNET and satellites, we tested the 'limited homeothermy' hypothesis (indicated by Tc & Ta regression slope < 1 or Tc < Ta around midday) across global extratropics, including temporal and spatial dimensions. Across daily to weekly and monthly timescales, over 80% of sites/ecosystems have slopes ≥1 or Tc > Ta around midday, rejecting the above hypothesis. For those sites unsupporting the hypothesis, their Tc -Ta difference (ΔT) exhibits considerable seasonality that shows negative, partial correlations with leaf area index, implying a certain degree of thermoregulation capability. Spatially, site-mean ΔT exhibits larger variations than the slope indicator, suggesting ΔT is a more sensitive indicator for detecting thermoregulatory differences across biomes. Furthermore, this large spatial-wide ΔT variation (0-6°C) is primarily explained by environmental variables (38%) and secondarily by biotic factors (15%). These results demonstrate diverse thermoregulation patterns across global extratropics, with most ecosystems negating the 'limited homeothermy' hypothesis, but their thermoregulation still occurs, implying that slope < 1 or Tc < Ta are not necessary conditions for plant thermoregulation.
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Affiliation(s)
- Zhengfei Guo
- School for Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Christopher J Still
- Forest Ecosystems and Society, Oregon State University, Corvallis, OR, 97331, USA
| | - Calvin K F Lee
- School for Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Youngryel Ryu
- Department of Landscape Architecture and Rural Systems Engineering, College of Agriculture and Life Sciences, Seoul National University, Gwanak-gu, Seoul, South Korea
| | - Benjamin Blonder
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA, 94720, USA
| | - Jing Wang
- School for Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Timothy C Bonebrake
- School for Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
- Institute for Climate and Carbon Neutrality, The University of Hong Kong, Hong Kong, China
| | - Alice Hughes
- School for Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
- Institute for Climate and Carbon Neutrality, The University of Hong Kong, Hong Kong, China
| | - Yan Li
- State Key Laboratory of Earth Surface Processes and Resources Ecology, Beijing Normal University, Beijing, 100875, China
| | - Henry C H Yeung
- School for Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Kun Zhang
- School for Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
- Department of Mathematics, The University of Hong Kong, Hong Kong, China
| | - Ying Ki Law
- School for Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Ziyu Lin
- School for Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Jin Wu
- School for Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
- Institute for Climate and Carbon Neutrality, The University of Hong Kong, Hong Kong, China
- State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, China
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11
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Kumari A, Sharma D, Sharma P, Wang C, Verma V, Patil A, Imran M, Singh MP, Kumar K, Paritosh K, Caragea D, Kapoor S, Chandel G, Grover A, Jagadish SVK, Katiyar-Agarwal S, Agarwal M. Meta-QTL and haplo-pheno analysis reveal superior haplotype combinations associated with low grain chalkiness under high temperature in rice. FRONTIERS IN PLANT SCIENCE 2023; 14:1133115. [PMID: 36968399 PMCID: PMC10031497 DOI: 10.3389/fpls.2023.1133115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Accepted: 02/17/2023] [Indexed: 06/18/2023]
Abstract
Chalk, an undesirable grain quality trait in rice, is primarily formed due to high temperatures during the grain-filling process. Owing to the disordered starch granule structure, air spaces and low amylose content, chalky grains are easily breakable during milling thereby lowering head rice recovery and its market price. Availability of multiple QTLs associated with grain chalkiness and associated attributes, provided us an opportunity to perform a meta-analysis and identify candidate genes and their alleles contributing to enhanced grain quality. From the 403 previously reported QTLs, 64 Meta-QTLs encompassing 5262 non-redundant genes were identified. MQTL analysis reduced the genetic and physical intervals and nearly 73% meta-QTLs were narrower than 5cM and 2Mb, revealing the hotspot genomic regions. By investigating expression profiles of 5262 genes in previously published datasets, 49 candidate genes were shortlisted on the basis of their differential regulation in at least two of the datasets. We identified non-synonymous allelic variations and haplotypes in 39 candidate genes across the 3K rice genome panel. Further, we phenotyped a subset panel of 60 rice accessions by exposing them to high temperature stress under natural field conditions over two Rabi cropping seasons. Haplo-pheno analysis uncovered haplotype combinations of two starch synthesis genes, GBSSI and SSIIa, significantly contributing towards the formation of grain chalk in rice. We, therefore, report not only markers and pre-breeding material, but also propose superior haplotype combinations which can be introduced using either marker-assisted breeding or CRISPR-Cas based prime editing to generate elite rice varieties with low grain chalkiness and high HRY traits.
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Affiliation(s)
- Anita Kumari
- Department of Botany, University of Delhi, Delhi, India
| | - Divya Sharma
- Department of Botany, University of Delhi, Delhi, India
| | - Priya Sharma
- Department of Botany, University of Delhi, Delhi, India
| | - Sahil
- Department of Botany, University of Delhi, Delhi, India
| | - Chaoxin Wang
- Department of Computer Science, Kansas State University, Manhattan, KS, United States
| | - Vibha Verma
- Department of Plant Molecular Biology, University of Delhi, New Delhi, India
| | - Arun Patil
- Department of Plant Molecular Biology and Biotechnology, Indira Gandhi Krishi Vishwavidyalaya, Chattisgarh, India
| | - Md Imran
- Department of Botany, University of Delhi, Delhi, India
| | - Madan Pal Singh
- Division of Plant Physiology, Indian Council of Agricultural Research (ICAR), New Delhi, India
| | - Kuldeep Kumar
- National Institute for Plant Biotechnology, Indian Council of Agricultural Research (ICAR), New Delhi, India
| | - Kumar Paritosh
- Centre for Genetic Manipulation of Crop Plants, New Delhi, India
| | - Doina Caragea
- Department of Computer Science, Kansas State University, Manhattan, KS, United States
| | - Sanjay Kapoor
- Department of Plant Molecular Biology, University of Delhi, New Delhi, India
| | - Girish Chandel
- Department of Plant Molecular Biology and Biotechnology, Indira Gandhi Krishi Vishwavidyalaya, Chattisgarh, India
| | - Anil Grover
- Department of Plant Molecular Biology, University of Delhi, New Delhi, India
| | | | | | - Manu Agarwal
- Department of Botany, University of Delhi, Delhi, India
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12
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Dupuis DJ, Engelke S, Trapin L. Modeling panels of extremes. Ann Appl Stat 2023. [DOI: 10.1214/22-aoas1639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
| | | | - Luca Trapin
- Department of Statistics, University of Bologna
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13
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Chen T, Ma J, Xu C, Jiang N, Li G, Fu W, Feng B, Wang D, Wu Z, Tao L, Fu G. Increased ATPase activity promotes heat-resistance, high-yield, and high-quality traits in rice by improving energy status. FRONTIERS IN PLANT SCIENCE 2022; 13:1035027. [PMID: 36600923 PMCID: PMC9806274 DOI: 10.3389/fpls.2022.1035027] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 09/26/2022] [Indexed: 06/17/2023]
Abstract
Heat stress during the reproductive stage results in major losses in yield and quality, which might be mainly caused by an energy imbalance. However, how energy status affected heat response, yield and quality remains unclear. No relationships were observed among the heat resistance, yield, and quality of the forty-nine early rice cultivars under normal temperature conditions. However, two cultivars, Zhuliangyou30 (ZLY30) and Luliangyou35 (LLY35), differing in heat resistance, yield, and quality were detected. The yield was higher and the chalkiness degree was lower in ZLY30 than in LLY35. Decreases in yields and increases in the chalkiness degree with temperatures were more pronounced in LLY35 than in ZLY30. The accumulation and allocation (ratio of the panicle to the whole plant) of dry matter weight and non-structural carbohydrates were higher in ZLY30 than in LLY35 across all sowing times and temperatures. The accumulation and allocation of dry matter weight and non-structural carbohydrates in panicles were higher in ZLY30 than in LLY35. Similar patterns were observed in the relative expression levels of sucrose unloading related genes SUT1 and SUT2 in grains. The ATP content was higher in the grains of LLY35 than in ZLY30, whereas the ATPase activity, which determined the energy status, was significantly lower in the former than in the latter. Thus, increased ATPase activity, which improved the energy status of rice, was the factor mediating the balance among heat-resistance, high-yield, and high-quality traits in rice.
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Affiliation(s)
- Tingting Chen
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
- Agronomy College, Jilin Agricultural University, Changchun, China
| | - Jiaying Ma
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Chunmei Xu
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Ning Jiang
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Guangyan Li
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Agricultural College, Yangzhou University, Yangzhou, China
| | - Weimeng Fu
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Baohua Feng
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Danying Wang
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Zhihai Wu
- Agronomy College, Jilin Agricultural University, Changchun, China
| | - Longxing Tao
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Guanfu Fu
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
- Agronomy College, Jilin Agricultural University, Changchun, China
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14
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Du Y, Lu R, Sun H, Cui E, Yan L, Xia J. Plant photosynthetic overcompensation under nocturnal warming: lack of evidence in subtropical evergreen trees. ANNALS OF BOTANY 2022; 130:109-119. [PMID: 35690359 PMCID: PMC9295921 DOI: 10.1093/aob/mcac075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Accepted: 06/09/2022] [Indexed: 06/13/2023]
Abstract
BACKGROUND AND AIMS Increased plant photosynthesis under nocturnal warming is a negative feedback mechanism to overcompensate for night-time carbon loss to mitigate climate warming. This photosynthetic overcompensation effect has been observed in dry deciduous ecosystems but whether it exists in subtropical wet forest trees is unclear. METHODS Two subtropical evergreen tree species (Schima superba and Castanopsis sclerophylla) were grown in a greenhouse and exposed to ambient and elevated night-time temperature. The occurrence of the photosynthetic overcompensation effect was determined by measuring daytime and night-time leaf gas exchange and non-structural carbohydrate (NSC) concentration. KEY RESULTS A reduction in leaf photosynthesis for both species and an absence of persistent photosynthetic overcompensation were observed. The photosynthetic overcompensation effect was transient in S. superba due to respiratory acclimation and stomatal limitation. For S. superba, nocturnal warming resulted in insufficient changes in night-time respiration and NSC concentration to stimulate overcompensation and inhibited leaf stomatal conductance by increasing the leaf-to-air vapour pressure deficit. CONCLUSIONS The results indicate that leaf stomatal conductance is important for the photosynthetic overcompensation effect in different tree species. The photosynthetic overcompensation effect under nocturnal warming may be a transient occurrence rather than a persistent mechanism in subtropical forest ecosystems.
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Affiliation(s)
- Ying Du
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Ruiling Lu
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Huanfa Sun
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Erqian Cui
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Liming Yan
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
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15
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Lu R, Du Y, Sun H, Xu X, Yan L, Xia J. Nocturnal warming accelerates drought-induced seedling mortality of two evergreen tree species. TREE PHYSIOLOGY 2022; 42:1164-1176. [PMID: 34919711 DOI: 10.1093/treephys/tpab168] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Accepted: 12/10/2021] [Indexed: 06/14/2023]
Abstract
Extreme drought is one of the key climatic drivers of tree mortality on a global scale. However, it remains unclear whether the drought-induced tree mortality will increase under nocturnal climate warming. Here we exposed seedlings of two wide-ranging subtropical tree species, Castanopsis sclerophylla and Schima superba, with contrasting stomatal regulation strategies to prolonged drought under ambient and elevated night-time temperature by 2 °C. We quantified the seedling survival time since drought treatment by measuring multiple leaf traits such as leaf gas exchange, predawn leaf water potential and water-use efficiency. The results showed that all seedlings in the ambient temperature died within 180 days and 167 days of drought for C. sclerophylla and S. superba, respectively. Night warming significantly shortened the survival time of C. sclerophylla, by 31 days, and S. superba by 28 days, under the drought treatment. A survival analysis further showed that seedlings under night warming suffered a 1.6 times greater mortality risk than those under ambient temperature. Further analyses revealed that night warming suppressed net leaf carbon gain in both species by increasing the nocturnal respiratory rate of S. superba across the first 120 days of drought and decreasing the photosynthetic rate of both species generally after 46 days of drought. These effects on net carbon gain were more pronounced in S. superba than C. sclerophylla. After 60 days of drought, night warming decreased the predawn leaf water potential and leaf water-use efficiency of C. sclerophylla but not S. superba. These contrasting responses are partially due to variations in stomatal control between the two species. These findings suggest that stomatal traits can regulate the response of leaf gas exchange and plant water-use to nocturnal warming during drought. This study indicates that nocturnal warming can accelerate tree mortality during drought. Night warming accelerates the mortality of two subtropical seedlings under drought.Night warming differently affects the drought response of leaf gas exchange and plant water-use between the two species due to species-specific stomatal morphological traits.Carbon metabolism changes and hydraulic damage play differential roles in driving night-warming impacts on the drought-induced mortality between the two species.
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Affiliation(s)
- Ruiling Lu
- Tiantong Forest Ecosystem National Observation and Research Station, Research Center for Global Change and Complex Ecosystems, School of Ecological and Environmental Sciences, East China Normal University, 500 Dongchuan Road, Minhang District, Shanghai 200241, China
| | - Ying Du
- Tiantong Forest Ecosystem National Observation and Research Station, Research Center for Global Change and Complex Ecosystems, School of Ecological and Environmental Sciences, East China Normal University, 500 Dongchuan Road, Minhang District, Shanghai 200241, China
| | - Huanfa Sun
- Tiantong Forest Ecosystem National Observation and Research Station, Research Center for Global Change and Complex Ecosystems, School of Ecological and Environmental Sciences, East China Normal University, 500 Dongchuan Road, Minhang District, Shanghai 200241, China
| | - Xiaoni Xu
- Tiantong Forest Ecosystem National Observation and Research Station, Research Center for Global Change and Complex Ecosystems, School of Ecological and Environmental Sciences, East China Normal University, 500 Dongchuan Road, Minhang District, Shanghai 200241, China
| | - Liming Yan
- Tiantong Forest Ecosystem National Observation and Research Station, Research Center for Global Change and Complex Ecosystems, School of Ecological and Environmental Sciences, East China Normal University, 500 Dongchuan Road, Minhang District, Shanghai 200241, China
| | - Jianyang Xia
- Tiantong Forest Ecosystem National Observation and Research Station, Research Center for Global Change and Complex Ecosystems, School of Ecological and Environmental Sciences, East China Normal University, 500 Dongchuan Road, Minhang District, Shanghai 200241, China
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16
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Respiratory and Photosynthetic Responses of Antarctic Vascular Plants Are Differentially Affected by CO2 Enrichment and Nocturnal Warming. PLANTS 2022; 11:plants11111520. [PMID: 35684292 PMCID: PMC9182836 DOI: 10.3390/plants11111520] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Revised: 06/02/2022] [Accepted: 06/03/2022] [Indexed: 11/16/2022]
Abstract
Projected rises in atmospheric CO2 concentration and minimum night-time temperatures may have important effects on plant carbon metabolism altering the carbon balance of the only two vascular plant species in the Antarctic Peninsula. We assessed the effect of nocturnal warming (8/5 °C vs. 8/8 °C day/night) and CO2 concentrations (400 ppm and 750 ppm) on gas exchange, non-structural carbohydrates, two respiratory-related enzymes, and mitochondrial size and number in two species of vascular plants. In Colobanthus quitensis, light-saturated photosynthesis measured at 400 ppm was reduced when plants were grown in the elevated CO2 or in the nocturnal warming treatments. Growth in elevated CO2 reduced stomatal conductance but nocturnal warming did not. The short-term sensitivity of respiration, relative protein abundance, and mitochondrial traits were not responsive to either treatment in this species. Moreover, some acclimation to nocturnal warming at ambient CO2 was observed. Altogether, these responses in C. quitensis led to an increase in the respiration-assimilation ratio in plants grown in elevated CO2. The response of Deschampsia antarctica to the experimental treatments was quite distinct. Photosynthesis was not affected by either treatment; however, respiration acclimated to temperature in the elevated CO2 treatment. The observed short-term changes in thermal sensitivity indicate type I acclimation of respiration. Growth in elevated CO2 and nocturnal warming resulted in a reduction in mitochondrial numbers and an increase in mitochondrial size in D. antarctica. Overall, our results suggest that with climate change D. antarctica could be more successful than C. quitensis, due to its ability to make metabolic adjustments to maintain its carbon balance.
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17
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Rutley N, Harper JF, Miller G. Reproductive resilience: putting pollen grains in two baskets. TRENDS IN PLANT SCIENCE 2022; 27:237-246. [PMID: 34627662 DOI: 10.1016/j.tplants.2021.09.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 08/25/2021] [Accepted: 09/06/2021] [Indexed: 06/13/2023]
Abstract
To ensure reproductive success, flowering plants produce an excess of pollen to fertilize a limited number of ovules. Pollen grains mature into two distinct subpopulations - those that display high metabolic activity and elevated reactive oxygen species (ROS) levels immediately after hydration (high-ROS/active), and those that maintain an extended period of dormancy with low metabolic activity (low-ROS/inactive/arrested/dormant). We propose that the dormant pollen serves as a backup to provide a second chance for successful fertilization when the 'first wave' of pollen encounters an unpredictable growth condition such as heat stress. This model provides a framework for considering the role of dormancy in reproductive stress tolerance as well as strategies for mitigating pollen thermovulnerability to daytime and night-time warming that is associated with global climate change.
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Affiliation(s)
- Nicholas Rutley
- The Mina and Everard Goodman Faculty of Life Sciences, Bar Ilan University, Ramat-Gan, 5290002, Israel
| | - Jeffery F Harper
- Department of Biochemistry and Molecular Biology, University of Nevada at Reno, NV 89557, USA
| | - Gad Miller
- The Mina and Everard Goodman Faculty of Life Sciences, Bar Ilan University, Ramat-Gan, 5290002, Israel.
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18
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Wang C, Caragea D, Kodadinne Narayana N, Hein NT, Bheemanahalli R, Somayanda IM, Jagadish SVK. Deep learning based high-throughput phenotyping of chalkiness in rice exposed to high night temperature. PLANT METHODS 2022; 18:9. [PMID: 35065667 PMCID: PMC8783510 DOI: 10.1186/s13007-022-00839-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 01/06/2022] [Indexed: 05/02/2023]
Abstract
BACKGROUND Rice is a major staple food crop for more than half the world's population. As the global population is expected to reach 9.7 billion by 2050, increasing the production of high-quality rice is needed to meet the anticipated increased demand. However, global environmental changes, especially increasing temperatures, can affect grain yield and quality. Heat stress is one of the major causes of an increased proportion of chalkiness in rice, which compromises quality and reduces the market value. Researchers have identified 140 quantitative trait loci linked to chalkiness mapped across 12 chromosomes of the rice genome. However, the available genetic information acquired by employing advances in genetics has not been adequately exploited due to a lack of a reliable, rapid and high-throughput phenotyping tool to capture chalkiness. To derive extensive benefit from the genetic progress achieved, tools that facilitate high-throughput phenotyping of rice chalkiness are needed. RESULTS We use a fully automated approach based on convolutional neural networks (CNNs) and Gradient-weighted Class Activation Mapping (Grad-CAM) to detect chalkiness in rice grain images. Specifically, we train a CNN model to distinguish between chalky and non-chalky grains and subsequently use Grad-CAM to identify the area of a grain that is indicative of the chalky class. The area identified by the Grad-CAM approach takes the form of a smooth heatmap that can be used to quantify the degree of chalkiness. Experimental results on both polished and unpolished rice grains using standard instance classification and segmentation metrics have shown that Grad-CAM can accurately identify chalky grains and detect the chalkiness area. CONCLUSIONS We have successfully demonstrated the application of a Grad-CAM based tool to accurately capture high night temperature induced chalkiness in rice. The models trained will be made publicly available. They are easy-to-use, scalable and can be readily incorporated into ongoing rice breeding programs, without rice researchers requiring computer science or machine learning expertise.
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Affiliation(s)
- Chaoxin Wang
- Department of Computer Science, Kansas State University, Manhattan, KS 66506 USA
| | - Doina Caragea
- Department of Computer Science, Kansas State University, Manhattan, KS 66506 USA
| | - Nisarga Kodadinne Narayana
- Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762 USA
| | - Nathan T. Hein
- Department of Agronomy, Kansas State University, Manhattan, KS 66506 USA
| | - Raju Bheemanahalli
- Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS 39762 USA
| | - Impa M. Somayanda
- Department of Agronomy, Kansas State University, Manhattan, KS 66506 USA
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19
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Bahuguna RN, Chaturvedi AK, Pal M, Viswanathan C, Jagadish SVK, Pareek A. Carbon dioxide responsiveness mitigates rice yield loss under high night temperature. PLANT PHYSIOLOGY 2022; 188:285-300. [PMID: 34643728 PMCID: PMC8774858 DOI: 10.1093/plphys/kiab470] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 09/11/2021] [Indexed: 05/26/2023]
Abstract
Increasing night-time temperatures are a major threat to sustaining global rice (Oryza sativa L.) production. A simultaneous increase in [CO2] will lead to an inevitable interaction between elevated [CO2] (e[CO2]) and high night temperature (HNT) under current and future climates. Here, we conducted field experiments to identify [CO2] responsiveness from a diverse indica panel comprising 194 genotypes under different planting geometries in 2016. Twenty-three different genotypes were tested under different planting geometries and e[CO2] using a free-air [CO2] enrichment facility in 2017. The most promising genotypes and positive and negative controls were tested under HNT and e[CO2] + HNT in 2018. [CO2] responsiveness, measured as a composite response index on different yield components, grain yield, and photosynthesis, revealed a strong relationship (R2 = 0.71) between low planting density and e[CO2]. The most promising genotypes revealed significantly lower (P < 0.001) impact of HNT in high [CO2] responsive (HCR) genotypes compared to the least [CO2] responsive genotype. [CO2] responsiveness was the major driver determining grain yield and related components in HCR genotypes with a negligible yield loss under HNT. A systematic investigation highlighted that active selection and breeding for [CO2] responsiveness can lead to maintained carbon balance and compensate for HNT-induced yield losses in rice and potentially other C3 crops under current and future warmer climates.
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Affiliation(s)
- Rajeev Nayan Bahuguna
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi 110012, India
- Centre for Advance Studies on Climate Change, Dr Rajendra Prasad Central Agricultural University, Samastipur 848125, India
| | - Ashish Kumar Chaturvedi
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi 110012, India
- Land and Water Management Research Group, Centre for Water Resources Development and Management, Kozhikode 673571, India
| | - Madan Pal
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Chinnusamy Viswanathan
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi 110012, India
| | - S V Krishna Jagadish
- Department of Agronomy, Kansas State University, Manhattan, Kansas 66506, USA
- Department of Crop Physiology, University of Agricultural Sciences, Bengaluru 560065, India
| | - Ashwani Pareek
- School of Life Sciences, Stress Physiology and Molecular Biology Laboratory, Jawaharlal Nehru University, New Delhi 110067, India
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20
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Zsögön A, Peres LEP, Xiao Y, Yan J, Fernie AR. Enhancing crop diversity for food security in the face of climate uncertainty. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 109:402-414. [PMID: 34882870 DOI: 10.1111/tpj.15626] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 11/30/2021] [Accepted: 12/04/2021] [Indexed: 05/23/2023]
Abstract
Global agriculture is dominated by a handful of species that currently supply a huge proportion of our food and feed. It additionally faces the massive challenge of providing food for 10 billion people by 2050, despite increasing environmental deterioration. One way to better plan production in the face of current and continuing climate change is to better understand how our domestication of these crops included their adaptation to environments that were highly distinct from those of their centre of origin. There are many prominent examples of this, including the development of temperate Zea mays (maize) and the alteration of day-length requirements in Solanum tuberosum (potato). Despite the pre-eminence of some 15 crops, more than 50 000 species are edible, with 7000 of these considered semi-cultivated. Opportunities afforded by next-generation sequencing technologies alongside other methods, including metabolomics and high-throughput phenotyping, are starting to contribute to a better characterization of a handful of these species. Moreover, the first examples of de novo domestication have appeared, whereby key target genes are modified in a wild species in order to confer predictable traits of agronomic value. Here, we review the scale of the challenge, drawing extensively on the characterization of past agriculture to suggest informed strategies upon which the breeding of future climate-resilient crops can be based.
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Affiliation(s)
- Agustin Zsögön
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, CEP 36570-900, Viçosa, MG, Brazil
| | - Lázaro E P Peres
- Laboratory of Plant Developmental Genetics, Departamento de Ciências Biológicas, Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, CP 09, 13418-900, Piracicaba, SP, Brazil
| | - Yingjie Xiao
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Jianbing Yan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Alisdair R Fernie
- Department of Molecular Physiology, Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
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21
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Singh G, Sarkar NK, Grover A. Hsp70, sHsps and ubiquitin proteins modulate HsfA6a-mediated Hsp101 transcript expression in rice (Oryza sativa L.). PHYSIOLOGIA PLANTARUM 2021; 173:2055-2067. [PMID: 34498290 DOI: 10.1111/ppl.13552] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 08/27/2021] [Indexed: 06/13/2023]
Abstract
Hsp100 chaperones disaggregate the aggregated proteins and are vital for maintenance of protein homeostasis. The level of Hsp100 synthesised in the cells has a bearing on the survival of plants under heat stress. The Hsp100 transcription machinery is activated within minutes of the onset of heat stress. The heat shock factor HsfA6a plays a major role in the transcriptional regulation of the Hsp101 gene in rice plants. Through yeast-2-hybrid library screening, we identified small heat shock proteins (sHSPs), Hsp70 and ubiquitin as HsfA6a interacting proteins (HIPs). The bimolecular fluorescence complementation assays showed the physical interaction of HsfA6a with Hsp16.9A-CI and Hsp18.0-CII in the cytosolic region and with cHsp70-1 in the nucleus. With the Hsp101 promoter: reporter gene assays, using yeast cells and rice protoplasts, we show that CI-sHsps and CII-sHsps are negative regulators and Hsp70 positive regulator of the HsfA6a activity in modulation of Hsp101 transcription. We also noted that the HsfA6a interactors, Hsp70 and CI-sHsps and CII-sHsps, physically interact with each other. We noted that HsfA6a binds with the CI-sHsp and Hsp70 promoters, implying that HsfA6a has a role in transcriptional regulation of its interacting proteins. Furthermore, we noted that the mutation of the ubiquitin/sumoylation acceptor site lysine 10 to alanine (K10A) of HsfA6a enhanced its DNA binding potential on the Hsp101 promoter, implying that these modifiers are possibly involved in modulation of HsfA6a activity. Our work shows that Hsp70, CI-sHsps and CII-sHsp, and ubiquitin proteins coordinate with HsfA6a in mediating the Hsp101 transcription process in rice.
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Affiliation(s)
- Garima Singh
- Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, India
| | - Neelam K Sarkar
- Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, India
| | - Anil Grover
- Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, India
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Murakami K, Shimoda S, Kominami Y, Nemoto M, Inoue S. Prediction of municipality-level winter wheat yield based on meteorological data using machine learning in Hokkaido, Japan. PLoS One 2021; 16:e0258677. [PMID: 34662365 PMCID: PMC8523044 DOI: 10.1371/journal.pone.0258677] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2021] [Accepted: 10/03/2021] [Indexed: 11/04/2022] Open
Abstract
This study analyzed meteorological constraints on winter wheat yield in the northern Japanese island, Hokkaido, and developed a machine learning model to predict municipality-level yields from meteorological data. Compared to most wheat producing areas, this island is characterized by wet climate owing to greater annual precipitation and abundant snowmelt water supply in spring. Based on yield statistics collected from 119 municipalities for 14 years (N = 1,516) and high-resolution surface meteorological data, correlation analyses showed that precipitation, daily minimum air temperature, and irradiance during the grain-filling period had significant effects on the yield throughout the island while the effect of snow depth in early winter and spring was dependent on sites. Using 10-d mean meteorological data within a certain period between seeding and harvest as predictor variables and one-year-leave-out cross-validation procedure, performance of machine learning models based on neural network (NN), random forest (RF), support vector machine regression (SVR), partial least squares regression (PLS), and cubist regression (CB) were compared to a multiple linear regression model (MLR) and a null model that returns an average yield of the municipality. The root mean square errors of PLS, SVR, and RF were 872, 982, and 1,024 kg ha−1 and were smaller than those of MLR (1,068 kg ha−1) and null model (1,035 kg ha−1). These models outperformed the controls in other metrics including Pearson’s correlation coefficient and Nash-Sutcliffe efficiency. Variable importance analysis on PLS indicated that minimum air temperature and precipitation during the grain-filling period had major roles in the prediction and excluding predictors in this period (i.e. yield forecast with a longer lead-time) decreased forecast performance of the models. These results were consistent with our understanding of meteorological impacts on wheat yield, suggesting usefulness of explainable machine learning in meteorological crop yield prediction under wet climate.
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Affiliation(s)
- Keach Murakami
- Hokkaido Agricultural Research Center (HARC), Toyohira, Sapporo, Hokkaido, Japan
- * E-mail:
| | - Seiji Shimoda
- National Agriculture and Food Research Organization (NARO), Memuro, Kasai, Hokkaido, Japan
| | - Yasuhiro Kominami
- Hokkaido Agricultural Research Center (HARC), Toyohira, Sapporo, Hokkaido, Japan
| | - Manabu Nemoto
- Hokkaido Agricultural Research Center (HARC), Toyohira, Sapporo, Hokkaido, Japan
| | - Satoshi Inoue
- Hokkaido Agricultural Research Center (HARC), Toyohira, Sapporo, Hokkaido, Japan
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23
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McAusland L, Smith KE, Williams A, Molero G, Murchie EH. Nocturnal stomatal conductance in wheat is growth-stage specific and shows genotypic variation. THE NEW PHYTOLOGIST 2021; 232:162-175. [PMID: 34143507 DOI: 10.1111/nph.17563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 06/09/2021] [Indexed: 06/12/2023]
Abstract
Nocturnal stomatal conductance (gsn ) represents a significant source of water loss, with implications for metabolism, thermal regulation and water-use efficiency. With increasing nocturnal temperatures due to climate change, it is vital to identify and understand variation in the magnitude and responses of gsn in major crops. We assessed interspecific variation in gsn and daytime stomatal conductance (gs ) in a wild relative and modern spring wheat genotype. To investigate intraspecific variation, we grew six modern wheat genotypes and two landraces under well watered, simulated field conditions. For the diurnal data, higher gsn in the wild relative was associated with significantly lower nocturnal respiration and higher daytime CO2 assimilation while both species exhibited declines in gsn post-dusk and pre-dawn. Lifetime gsn achieved rates of 5.7-18.9% of gs . Magnitude of gsn was genotype specific 'and positively correlated with gs . gsn and gs were significantly higher on the adaxial surface. No relationship was determined between harvest characteristics, stomatal morphology and gsn , while cuticular conductance was genotype specific. Finally, for the majority of genotypes, gsn declined with age. Here we present the discovery that variation in gsn occurs across developmental, morphological and temporal scales in nonstressed wheat, presenting opportunities for exploiting intrinsic variation under heat or water stressed conditions.
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Affiliation(s)
- Lorna McAusland
- School of Biosciences, University of Nottingham, Sutton Bonington, LE12 5RD, UK
| | - Kellie E Smith
- School of Biosciences, University of Nottingham, Sutton Bonington, LE12 5RD, UK
| | - Alexander Williams
- School of Biosciences, University of Nottingham, Sutton Bonington, LE12 5RD, UK
| | - Gemma Molero
- International Maize and Wheat Improvement Center (CIMMYT), Km. 45, Carretera Mexico, El Batan, Texcoco, CP 56237, Mexico
| | - Erik H Murchie
- School of Biosciences, University of Nottingham, Sutton Bonington, LE12 5RD, UK
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24
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Schaarschmidt S, Glaubitz U, Erban A, Kopka J, Zuther E. Differentiation of the High Night Temperature Response in Leaf Segments of Rice Cultivars with Contrasting Tolerance. Int J Mol Sci 2021; 22:ijms221910451. [PMID: 34638787 PMCID: PMC8508630 DOI: 10.3390/ijms221910451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Revised: 09/15/2021] [Accepted: 09/23/2021] [Indexed: 11/16/2022] Open
Abstract
High night temperatures (HNT) affect rice yield in the field and induce chlorosis symptoms in leaves in controlled chamber experiments. However, little is known about molecular changes in leaf segments under these conditions. Transcript and metabolite profiling were performed for leaf segments of six rice cultivars with different HNT sensitivity. The metabolite profile of the sheath revealed a lower metabolite abundance compared to segments of the leaf blade. Furthermore, pre-adaptation to stress under control conditions was detected in the sheath, whereas this segment was only slightly affected by HNT. No unique significant transcriptomic changes were observed in the leaf base, including the basal growth zone at HNT conditions. Instead, selected metabolites showed correlations with HNT sensitivity in the base. The middle part and the tip were most highly affected by HNT in sensitive cultivars on the transcriptomic level with higher expression of jasmonic acid signaling related genes, genes encoding enzymes involved in flavonoid metabolism and a gene encoding galactinol synthase. In addition, gene expression of expansins known to improve stress tolerance increased in tolerant and sensitive cultivars. The investigation of the different leaf segments indicated highly segment specific responses to HNT. Molecular key players for HNT sensitivity were identified.
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25
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Sadok W, Lopez JR, Smith KP. Transpiration increases under high-temperature stress: Potential mechanisms, trade-offs and prospects for crop resilience in a warming world. PLANT, CELL & ENVIRONMENT 2021; 44:2102-2116. [PMID: 33278035 DOI: 10.1111/pce.13970] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2020] [Revised: 11/19/2020] [Accepted: 11/20/2020] [Indexed: 05/24/2023]
Abstract
The frequency and intensity of high-temperature stress events are expected to increase as climate change intensifies. Concomitantly, an increase in evaporative demand, driven in part by global warming, is also taking place worldwide. Despite this, studies examining high-temperature stress impacts on plant productivity seldom consider this interaction to identify traits enhancing yield resilience towards climate change. Further, new evidence documents substantial increases in plant transpiration rate in response to high-temperature stress even under arid environments, which raise a trade-off between the need for latent cooling dictated by excessive temperatures and the need for water conservation dictated by increasing evaporative demand. However, the mechanisms behind those responses, and the potential to design the next generation of crops successfully navigating this trade-off, remain poorly investigated. Here, we review potential mechanisms underlying reported increases in transpiration rate under high-temperature stress, within the broader context of their impact on water conservation needed for crop drought tolerance. We outline three main contributors to this phenomenon, namely stomatal, cuticular and water viscosity-based mechanisms, and we outline research directions aiming at designing new varieties optimized for specific temperature and evaporative demand regimes to enhance crop productivity under a warmer and dryer climate.
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Affiliation(s)
- Walid Sadok
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, USA
| | - Jose R Lopez
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, USA
| | - Kevin P Smith
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, USA
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26
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Coast O, Posch BC, Bramley H, Gaju O, Richards RA, Lu M, Ruan YL, Trethowan R, Atkin OK. Acclimation of leaf photosynthesis and respiration to warming in field-grown wheat. PLANT, CELL & ENVIRONMENT 2021; 44:2331-2346. [PMID: 33283881 DOI: 10.1111/pce.13971] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Accepted: 12/02/2020] [Indexed: 06/12/2023]
Abstract
Climate change and future warming will significantly affect crop yield. The capacity of crops to dynamically adjust physiological processes (i.e., acclimate) to warming might improve overall performance. Understanding and quantifying the degree of acclimation in field crops could ensure better parameterization of crop and Earth System models and predictions of crop performance. We hypothesized that for field-grown wheat, when measured at a common temperature (25°C), crops grown under warmer conditions would exhibit acclimation, leading to enhanced crop performance and yield. Acclimation was defined as (a) decreased rates of net photosynthesis at 25°C (A25 ) coupled with lower maximum carboxylation capacity (Vcmax25 ), (b) reduced leaf dark respiration at 25°C (both in terms of O2 consumption Rdark _O225 and CO2 efflux Rdark _CO225 ) and (c) lower Rdark _CO225 to Vcmax25 ratio. Field experiments were conducted over two seasons with 20 wheat genotypes, sown at three different planting dates, to test these hypotheses. Leaf-level CO2 -based traits (A25 , Rdark _CO225 and Vcmax25 ) did not show the classic acclimation responses that we hypothesized; by contrast, the hypothesized changes in Rdark_ O2 were observed. These findings have implications for predictive crop models that assume similar temperature response among these physiological processes and for predictions of crop performance in a future warmer world.
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Affiliation(s)
- Onoriode Coast
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, Australia
- Agriculture, Health and Environment Department, Natural Resources Institute, Faculty of Engineering and Science, University of Greenwich, Kent, UK
| | - Bradley C Posch
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, Australia
| | - Helen Bramley
- School of Life and Environmental Sciences, Plant Breeding Institute, Sydney Institute of Agriculture, The University of Sydney, Narrabri, New South Wales, Australia
| | - Oorbessy Gaju
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, Australia
- College of Science, Lincoln Institute of Agri-Food Technology, University of Lincoln, Lincolnshire, UK
| | | | - Meiqin Lu
- Australian Grain Technologies, Narrabri, New South Wales, Australia
| | - Yong-Ling Ruan
- Australia-China Research Centre for Crop Improvement and School of Environmental and Life Sciences, The University of Newcastle, Callaghan, New South Wales, Australia
| | - Richard Trethowan
- School of Life and Environmental Sciences, Plant Breeding Institute, Sydney Institute of Agriculture, The University of Sydney, Narrabri, New South Wales, Australia
- School of Life and Environmental Sciences, Plant Breeding Institute, Sydney Institute of Agriculture, The University of Sydney, Cobbitty, New South Wales, Australia
| | - Owen K Atkin
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, Australia
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27
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Impa SM, Raju B, Hein NT, Sandhu J, Prasad PVV, Walia H, Jagadish SVK. High night temperature effects on wheat and rice: Current status and way forward. PLANT, CELL & ENVIRONMENT 2021; 44:2049-2065. [PMID: 33576033 DOI: 10.1111/pce.14028] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 01/31/2021] [Indexed: 05/25/2023]
Abstract
Rapid increases in minimum night temperature than in maximum day temperature is predicted to continue, posing significant challenges to crop productivity. Rice and wheat are two major staples that are sensitive to high night-temperature (HNT) stress. This review aims to (i) systematically compare the grain yield responses of rice and wheat exposed to HNT stress across scales, and (ii) understand the physiological and biochemical responses that affect grain yield and quality. To achieve this, we combined a synthesis of current literature on HNT effects on rice and wheat with information from a series of independent experiments we conducted across scales, using a common set of genetic materials to avoid confounding our findings with differences in genetic background. In addition, we explored HNT-induced alterations in physiological mechanisms including carbon balance, source-sink metabolite changes and reactive oxygen species. Impacts of HNT on grain developmental dynamics focused on grain-filling duration, post-flowering senescence, changes in grain starch and protein composition, starch metabolism enzymes and chalk formation in rice grains are summarized. Finally, we highlight the need for high-throughput field-based phenotyping facilities for improved assessment of large-diversity panels and mapping populations to aid breeding for increased resilience to HNT in crops.
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Affiliation(s)
- Somayanda M Impa
- Department of Agronomy, Kansas State University, Manhattan, Kansas, USA
| | | | - Nathan T Hein
- Department of Agronomy, Kansas State University, Manhattan, Kansas, USA
| | - Jaspreet Sandhu
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
| | - P V Vara Prasad
- Department of Agronomy, Kansas State University, Manhattan, Kansas, USA
| | - Harkamal Walia
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
| | - S V Krishna Jagadish
- Department of Agronomy, Kansas State University, Manhattan, Kansas, USA
- Sustainable Impact Platform, International Rice Research Institute (IRRI), Metro Manila, Philippines
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28
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Schaarschmidt S, Lawas LMF, Kopka J, Jagadish SVK, Zuther E. Physiological and molecular attributes contribute to high night temperature tolerance in cereals. PLANT, CELL & ENVIRONMENT 2021; 44:2034-2048. [PMID: 33764557 DOI: 10.1111/pce.14055] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Revised: 03/22/2021] [Accepted: 03/23/2021] [Indexed: 05/24/2023]
Abstract
Asymmetric warming resulting in a faster increase in night compared to day temperatures affects crop yields negatively. Physiological characterization and agronomic findings have been complemented more recently by molecular biology approaches including transcriptomic, proteomic, metabolomic and lipidomic investigations in crops exposed to high night temperature (HNT) conditions. Nevertheless, the understanding of the underlying mechanisms causing yield decline under HNT is still limited. The discovery of significant differences between HNT-tolerant and HNT-sensitive cultivars is one of the main research directions to secure continuous food supply under the challenge of increasing climate change. With this review, we provide a summary of current knowledge on the physiological and molecular basis of contrasting HNT tolerance in rice and wheat cultivars. Requirements for HNT tolerance and the special adaptation strategies of the HNT-tolerant rice cultivar Nagina-22 (N22) are discussed. Putative metabolite markers for HNT tolerance useful for marker-assisted breeding are suggested, together with future research directions aimed at improving food security under HNT conditions.
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Affiliation(s)
| | | | - Joachim Kopka
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
| | | | - Ellen Zuther
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
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29
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Scafaro AP, Fan Y, Posch BC, Garcia A, Coast O, Atkin OK. Responses of leaf respiration to heatwaves. PLANT, CELL & ENVIRONMENT 2021; 44:2090-2101. [PMID: 33534189 DOI: 10.1111/pce.14018] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Revised: 01/21/2021] [Accepted: 01/23/2021] [Indexed: 06/12/2023]
Abstract
Mitochondrial respiration (R) is central to plant physiology and responds dynamically to daily short-term temperature changes. In the longer-term, changes in energy demand and membrane fluidity can decrease leaf R at a common temperature and increase the temperature at which leaf R peaks (Tmax ). However, leaf R functionality is more susceptible to short-term heatwaves. Catalysis increases with rising leaf temperature, driving faster metabolism and leaf R demand, despite declines in photosynthesis restricting assimilate supply and growth. Proteins denature as temperatures increase further, adding to maintenance costs. Excessive heat also inactivates respiratory enzymes, with a concomitant limitation on the capacity of the R system. These competing push-and-pull factors are responsible for the diminishing acceleration in leaf R rate as temperature rises. Under extreme heat, membranes become overly fluid, and enzymes such as the cytochrome c oxidase are impaired. Such changes can lead to over-reduction of the energy system culminating in reactive oxygen species production. This ultimately leads to the total breakdown of leaf R, setting the limit of leaf survival. Understanding the heat stress responses of leaf R is imperative, given the continued rise in frequency and intensity of heatwaves and the importance of R for plant fitness and survival.
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Affiliation(s)
- Andrew P Scafaro
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Yuzhen Fan
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Bradley C Posch
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Andres Garcia
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Onoriode Coast
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
- Natural Resources Institute, Agriculture, Health and Environment Department, University of Greenwich, Kent, UK
| | - Owen K Atkin
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
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30
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Xu J, Misra G, Sreenivasulu N, Henry A. What happens at night? Physiological mechanisms related to maintaining grain yield under high night temperature in rice. PLANT, CELL & ENVIRONMENT 2021; 44:2245-2261. [PMID: 33715176 DOI: 10.1111/pce.14046] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Revised: 03/01/2021] [Accepted: 03/08/2021] [Indexed: 05/25/2023]
Abstract
High night temperature (HNT) causes substantial yield loss in rice (Oryza sativa L.). In this study, the physiological processes related to flag leaf dark respiration (Rn) and grain filling under HNT were explored in a multi-parent advanced generation intercross population developed for heat tolerance (MAGICheat ) along with selected high temperature tolerant breeding lines developed with heat-tolerant parents. Within a subset of lines, flag leaf Rn under HNT treatment was related to lower spikelet number per panicle and thus reduced yield. HNT enhanced the nighttime reduction of non-structural carbohydrates (NSC) in stem tissue, but not in leaves, and stem nighttime NSC reduction was negatively correlated with yield. Between heading and harvest, the major difference in NSC concentration was found for starch, but not for soluble sugar. HNT weakened the relationship between NSC remobilization and harvest index at both the phenotypic and genetic level. By using genome-wide association studies, an invertase inhibitor, MADS box transcription factors and a UDP-glycosyltransferase that were identified as candidate genes orchestrating stem NSC remobilization in the control treatment were lost under HNT. With the identification of physiological and genetic components related to rice HNT response, this study offers promising prebreeding materials and trait targets to sustain yield stability under climate change.
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Affiliation(s)
- Jiemeng Xu
- Strategic Innovation Platform, International Rice Research Institute, Los Baños, Philippines
| | - Gopal Misra
- Strategic Innovation Platform, International Rice Research Institute, Los Baños, Philippines
| | - Nese Sreenivasulu
- Strategic Innovation Platform, International Rice Research Institute, Los Baños, Philippines
| | - Amelia Henry
- Strategic Innovation Platform, International Rice Research Institute, Los Baños, Philippines
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31
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Zhu T, De Lima CFF, De Smet I. The Heat is On: How Crop Growth, Development and Yield Respond to High Temperature. JOURNAL OF EXPERIMENTAL BOTANY 2021:erab308. [PMID: 34185832 DOI: 10.1093/jxb/erab308] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Indexed: 06/13/2023]
Abstract
Plants are exposed to a wide range of temperatures during their life cycle and need to continuously adapt. These adaptations need to deal with temperature changes on a daily and seasonal level and with temperatures affected by climate change. Increasing global temperatures negatively impact crop performance, and several physiological, biochemical, morphological and developmental responses to increased temperature have been described that allow plants to mitigate this. In this review, we assess various growth, development, and yield-related responses of crops to extreme and moderate high temperature, focusing on knowledge gained from both monocot (e.g. wheat, barley, maize, rice) and dicot crops (e.g. soybean and tomato) and incorporating information from model plants (e.g. Arabidopsis and Brachypodium). This revealed common and different responses between dicot and monocot crops, and defined different temperature thresholds depending on the species, growth stage and organ.
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Affiliation(s)
- Tingting Zhu
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Cassio Flavio Fonseca De Lima
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Ive De Smet
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
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32
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Zhang Q, Yang Y, Peng S, Li Y. Nighttime transpirational cooling enabled by circadian regulation of stomatal conductance is related to stomatal anatomy and leaf morphology in rice. PLANTA 2021; 254:12. [PMID: 34165635 DOI: 10.1007/s00425-021-03661-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2021] [Accepted: 06/11/2021] [Indexed: 06/13/2023]
Abstract
Rice genotypes with larger stomata maintain higher nocturnal stomatal conductance, thus having lower nocturnal leaf temperature via transpirational cooling. Incomplete night stomatal closure has been widely observed, but the mechanisms and functions of nocturnal stomatal conductance (gs,n) are not fully understood. Stomatal anatomy, leaf morphology, gs,n and nocturnal leaf temperature (Tleaf,n) were measured in 30 Oryza genotypes. Nocturnal leaf conductance (gn) showed a significant circadian rhythm; it gradually increased by 58% from 20:30 to 04:30. Contrary to cuticular conductance (gcut), gs,n was highly correlated with gn. Moreover, gs,n accounted for 76% of gn. Tleaf,n was significantly lower than the air temperature, and was negatively correlated with both gs,n and nocturnal transpiration rate (En). gs,n was positively correlated with stomatal size, intervein distance between major veins (IVDmajor), leaf thickness (LT), individual leaf area (LA), and leaf width (LW). It was also found negatively correlated with stomatal density. Reversely, Tleaf,n was negatively correlated with stomatal size, IVDmajor, intervein distance between minor veins, LA and LW. Tleaf,n presented a positive correlation with stomatal density. This study highlights the importance of stomatal anatomy and leaf morphology on regulating gs,n and Tleaf,n. The underlying mechanisms to the determinants of gs,n and the physiological and ecological functions of the Tleaf,n regulation on rice growth and production were carefully discussed.
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Affiliation(s)
- Qiangqiang Zhang
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Yuhan Yang
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Shaobing Peng
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Yong Li
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.
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33
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Li X, Huang L, Peng S, Wang F. Inter‐annual climate variability constrains rice genetic improvement in China. Food Energy Secur 2021. [DOI: 10.1002/fes3.299] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Affiliation(s)
- Xiaoxiao Li
- National Key Laboratory of Crop Genetic Improvement MARA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River College of Plant Science and Technology Huazhong Agricultural University Wuhan China
| | - Liying Huang
- College of Agriculture Yangtze University Jingzhou China
| | - Shaobing Peng
- National Key Laboratory of Crop Genetic Improvement MARA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River College of Plant Science and Technology Huazhong Agricultural University Wuhan China
| | - Fei Wang
- National Key Laboratory of Crop Genetic Improvement MARA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River College of Plant Science and Technology Huazhong Agricultural University Wuhan China
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34
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López JR, Schoppach R, Sadok W. Harnessing nighttime transpiration dynamics for drought tolerance in grasses. PLANT SIGNALING & BEHAVIOR 2021; 16:1875646. [PMID: 33465000 PMCID: PMC7971256 DOI: 10.1080/15592324.2021.1875646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 01/08/2021] [Accepted: 01/09/2021] [Indexed: 06/12/2023]
Abstract
Non-negligible nighttime transpiration rates (TRN) have been identified in grasses such as wheat and barley. Evidence from the last 30 years indicate that in drought-prone environments with high evaporative demand, TRN could amount to 8-55% of daytime TR, leading several investigators to hypothesize that reducing TRN might represent a viable water-saving strategy that minimizes seemingly 'wasteful' water loss that is not traded for CO2 fixation. More recently however, evidence suggests that actual increases in TRN during pre-dawn hours, which are presumably controlled by the circadian clock, mediate drought tolerance - not through water conservation - but by enabling maximized gas exchange early in the morning before midday depression sets in. Finally, new findings point to a previously undocumented role for leaf sheaths as substantial contributors (up to 45%) of canopy TRN, although the extent of their involvement in these two strategies remains unknown. In this paper, we synthesize and reconcile key results from experimental and simulation-based modeling efforts conducted at scales ranging from the leaf tissue to the field plot on wheat and barley to show that both strategies could in fact concomitantly enable yield gains under limited water supply. We propose a simple framework highlighting the role played by TRN dynamics in drought tolerance and provide a synthesis of potential research directions, with an emphasis on the need for further examining the role played by the circadian clock and leaf sheath gas exchange.
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Affiliation(s)
- Jose R. López
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, USA
| | - Rémy Schoppach
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, USA
| | - Walid Sadok
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, USA
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Genome-wide association study and gene network analyses reveal potential candidate genes for high night temperature tolerance in rice. Sci Rep 2021; 11:6747. [PMID: 33762605 PMCID: PMC7991035 DOI: 10.1038/s41598-021-85921-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2020] [Accepted: 03/08/2021] [Indexed: 12/13/2022] Open
Abstract
High night temperatures (HNT) are shown to significantly reduce rice (Oryza sativa L.) yield and quality. A better understanding of the genetic architecture of HNT tolerance will help rice breeders to develop varieties adapted to future warmer climates. In this study, a diverse indica rice panel displayed a wide range of phenotypic variability in yield and quality traits under control night (24 °C) and higher night (29 °C) temperatures. Genome-wide association analysis revealed 38 genetic loci associated across treatments (18 for control and 20 for HNT). Nineteen loci were detected with the relative changes in the traits between control and HNT. Positive phenotypic correlations and co-located genetic loci with previously cloned grain size genes revealed common genetic regulation between control and HNT, particularly grain size. Network-based predictive models prioritized 20 causal genes at the genetic loci based on known gene/s expression under HNT in rice. Our study provides important insights for future candidate gene validation and molecular marker development to enhance HNT tolerance in rice. Integrated physiological, genomic, and gene network-informed approaches indicate that the candidate genes for stay-green trait may be relevant to minimizing HNT-induced yield and quality losses during grain filling in rice by optimizing source-sink relationships.
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36
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Wada H, Chang FY, Hatakeyama Y, Erra-Balsells R, Araki T, Nakano H, Nonami H. Endosperm cell size reduction caused by osmotic adjustment during nighttime warming in rice. Sci Rep 2021; 11:4447. [PMID: 33627723 PMCID: PMC7904791 DOI: 10.1038/s41598-021-83870-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Accepted: 01/27/2021] [Indexed: 11/09/2022] Open
Abstract
High night temperature (HNT) often reduces yield in field crops. In rice, HNT during the ripening stage diminishes endosperm cell size, resulting in a considerable reduction in final kernel weight; however, little is known about the underlying mechanisms at cell level. In this study, we performed picolitre pressure-probe-electrospray-ionization mass spectrometry to directly determine metabolites in growing inner endosperm cells of intact seeds produced under HNT conditions, combining with 13C feeding and water status measurements including in situ turgor assay. Microscopic observation in the inner zone suggested that approximately 24.2% of decrease in cell expansion rate occurred under HNT at early ripening stage, leading to a reduction in cell volume. It has been shown that HNT-treated plants were subjected to mild shoot water deficit at night and endosperm cell turgor was sustained by a decline in osmotic potential. Cell metabolomics also suggests that active solute accumulation was caused by a partial inhibition of wall and starch biosynthesis under HNT conditions. Because metabolites were detected in the single cells, it is concluded that a partial arrest of cell expansion observed in the inner endosperms was caused by osmotic adjustment at mild water deficit during HNT conditions.
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Affiliation(s)
- Hiroshi Wada
- Kyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization, Chikugo, Fukuoka, Japan. .,Graduate School of Agriculture, Ehime University, Matsuyama, Ehime, Japan. .,The United Graduate School of Agricultural Sciences, Ehime University, Matsuyama, Ehime, Japan.
| | - Fang-Yu Chang
- The United Graduate School of Agricultural Sciences, Ehime University, Matsuyama, Ehime, Japan.,Kaohsiung District Agricultural Research and Extension Station, Council of Agriculture, Executive Yuan, Pingtung, Taiwan
| | - Yuto Hatakeyama
- Kyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization, Chikugo, Fukuoka, Japan.,Graduate School of Agriculture, Ehime University, Matsuyama, Ehime, Japan
| | - Rosa Erra-Balsells
- Department of Organic Chemistry and CIHIDECAR (CONICET), University of Buenos Aires, Buenos Aires, Argentina
| | - Takuya Araki
- Graduate School of Agriculture, Ehime University, Matsuyama, Ehime, Japan.,The United Graduate School of Agricultural Sciences, Ehime University, Matsuyama, Ehime, Japan
| | - Hiroshi Nakano
- Kyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization, Chikugo, Fukuoka, Japan
| | - Hiroshi Nonami
- Graduate School of Agriculture, Ehime University, Matsuyama, Ehime, Japan
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37
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Degen GE, Orr DJ, Carmo-Silva E. Heat-induced changes in the abundance of wheat Rubisco activase isoforms. THE NEW PHYTOLOGIST 2021; 229:1298-1311. [PMID: 32964463 DOI: 10.1111/nph.16937] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Accepted: 09/02/2020] [Indexed: 05/24/2023]
Abstract
The Triticum aestivum (wheat) genome encodes three isoforms of Rubisco activase (Rca) differing in thermostability, which could be exploited to improve the resilience of this crop to global warming. We hypothesized that elevated temperatures would cause an increase in the relative abundance of heat-stable Rca1β. Wheat plants were grown at 25° C : 18°C (day : night) and exposed to heat stress (38° C : 22°C) for up to 5 d at pre-anthesis. Carbon (C) assimilation, Rubisco activity, CA1Pase activity, transcripts of Rca1β, Rca2β, and Rca2α, and the quantities of the corresponding protein products were measured during and after heat stress. The transcript of Rca1β increased 40-fold in 4 h at elevated temperatures and returned to the original level after 4 h upon return of plants to control temperatures. Rca1β comprised up to 2% of the total Rca protein in unstressed leaves but increased three-fold in leaves exposed to elevated temperatures for 5 d and remained high at 4 h after heat stress. These results show that elevated temperatures cause rapid changes in Rca gene expression and adaptive changes in Rca isoform abundance. The improved understanding of the regulation of C assimilation under heat stress will inform efforts to improve wheat productivity and climate resilience.
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Affiliation(s)
- Gustaf E Degen
- Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YQ, UK
| | - Douglas J Orr
- Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YQ, UK
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38
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Stuerz S, Asch F. Responses of Rice Growth to Day and Night Temperature and Relative Air Humidity-Leaf Elongation and Assimilation. PLANTS 2021; 10:plants10010134. [PMID: 33440793 PMCID: PMC7826779 DOI: 10.3390/plants10010134] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 01/04/2021] [Accepted: 01/08/2021] [Indexed: 11/29/2022]
Abstract
Predictions of future crop growth and yield under a changing climate require a precise knowledge of plant responses to their environment. Since leaf growth increases the photosynthesizing area of the plant, it occupies a central position during the vegetative phase. Rice is cultivated in diverse ecological zones largely differing in temperature and relative air humidity (RH). To investigate the effects of temperature and RH during day and night on leaf growth, one variety (IR64) was grown in a growth chamber using 9 day/night regimes around the same mean temperature and RH, which were combinations of 3 temperature treatments (30/20 °C, 25/25 °C, 20/30 °C day/night temperature) and 3 RH treatments (40/90%, 65/65%, 90/40% day/night RH). Day/night leaf elongation rates (LER) were measured and compared to leaf gas exchange measurements and leaf area expansion on the plant level. While daytime LER was mainly temperature-dependent, nighttime LER was equally affected by temperature and RH and closely correlated with leaf area expansion at the plant level. We hypothesize that the same parameters increasing LER during the night also enhance leaf area expansion via shifts in partitioning to larger and thinner leaves. Further, base temperatures estimated from LERs varied with RH, emphasizing the need to take RH into consideration when modeling crop growth in response to temperature.
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39
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Li G, Chen T, Feng B, Peng S, Tao L, Fu G. Respiration, Rather Than Photosynthesis, Determines Rice Yield Loss Under Moderate High-Temperature Conditions. FRONTIERS IN PLANT SCIENCE 2021; 12:678653. [PMID: 34249047 PMCID: PMC8264589 DOI: 10.3389/fpls.2021.678653] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Accepted: 06/03/2021] [Indexed: 05/11/2023]
Abstract
Photosynthesis is an important biophysical and biochemical reaction that provides food and oxygen to maintain aerobic life on earth. Recently, increasing photosynthesis has been revisited as an approach for reducing rice yield losses caused by high temperatures. We found that moderate high temperature causes less damage to photosynthesis but significantly increases respiration. In this case, the energy production efficiency is enhanced, but most of this energy is allocated to maintenance respiration, resulting in an overall decrease in the energy utilization efficiency. In this perspective, respiration, rather than photosynthesis, may be the primary contributor to yield losses in a high-temperature climate. Indeed, the dry matter weight and yield could be enhanced if the energy was mainly allocated to the growth respiration. Therefore, we proposed that engineering smart rice cultivars with a highly efficient system of energy production, allocation, and utilization could effectively solve the world food crisis under high-temperature conditions.
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Affiliation(s)
- Guangyan Li
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
- Crop Production and Physiology Center (CPPC), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Tingting Chen
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Baohua Feng
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Shaobing Peng
- Crop Production and Physiology Center (CPPC), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Longxing Tao
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
- *Correspondence: Longxing Tao,
| | - Guanfu Fu
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
- Guanfu Fu,
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40
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Hein NT, Bheemanahalli R, Wagner D, Vennapusa AR, Bustamante C, Ostmeyer T, Pokharel M, Chiluwal A, Fu J, Srikanthan DS, Neilsen ML, Jagadish SVK. Improved cyber-physical system captured post-flowering high night temperature impact on yield and quality of field grown wheat. Sci Rep 2020; 10:22213. [PMID: 33335185 PMCID: PMC7747627 DOI: 10.1038/s41598-020-79179-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Accepted: 12/04/2020] [Indexed: 11/09/2022] Open
Abstract
Winter wheat (Triticum aestivum L.) is essential to maintain food security for a large proportion of the world’s population. With increased risk from abiotic stresses due to climate variability, it is imperative to understand and minimize the negative impact of these stressors, including high night temperature (HNT). Both globally and at regional scales, a differential rate of increase in day and night temperature is observed, wherein night temperatures are increasing at a higher pace and the trend is projected to continue into the future. Previous studies using controlled environment facilities and small field-based removable chambers have shown that post-anthesis HNT stress can induce a significant reduction in wheat grain yield. A prototype was previously developed by utilizing field-based tents allowing for simultaneous phenotyping of popular winter wheat varieties from US Midwest and advanced breeding lines. Hence, the objectives of the study were to (i) design and build a new field-based infrastructure and test and validate the uniformity of HNT stress application on a scaled-up version of the prototype (ii) improve and develop a more sophisticated cyber-physical system to sense and impose post-anthesis HNT stress uniformly through physiological maturity within the scaled-up tents; and (iii) determine the impact of HNT stress during grain filling on the agronomic and grain quality parameters including starch and protein concentration. The system imposed a consistent post-anthesis HNT stress of + 3.8 °C until maturity and maintained uniform distribution of stress which was confirmed by (i) 0.23 °C temperature differential between an array of sensors within the tents and (ii) statistically similar performance of a common check replicated multiple times in each tent. On average, a reduction in grain-filling duration by 3.33 days, kernel weight by 1.25% per °C, grain number by 2.36% per °C and yield by 3.58% per °C increase in night temperature was documented. HNT stress induced a significant reduction in starch concentration indicating disturbed carbon balance. The pilot field-based facility integrated with a robust cyber-physical system provides a timely breakthrough for evaluating HNT stress impact on large diversity panels to enhance HNT stress tolerance across field crops. The flexibility of the cyber-physical system and movement capabilities of the field-based infrastructure allows this methodology to be adaptable to different crops.
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Affiliation(s)
- Nathan T Hein
- Department of Agronomy, Kansas State University, 1712 Claflin Road, Manhattan, KS, 66506-5501, USA
| | - Raju Bheemanahalli
- Department of Agronomy, Kansas State University, 1712 Claflin Road, Manhattan, KS, 66506-5501, USA
| | - Dan Wagner
- Department of Computer Science, Kansas State University, Manhattan, KS, 66506, USA
| | - Amaranatha R Vennapusa
- Department of Agronomy, Kansas State University, 1712 Claflin Road, Manhattan, KS, 66506-5501, USA
| | - Carlos Bustamante
- Department of Agronomy, Kansas State University, 1712 Claflin Road, Manhattan, KS, 66506-5501, USA
| | - Troy Ostmeyer
- Department of Agronomy, Kansas State University, 1712 Claflin Road, Manhattan, KS, 66506-5501, USA
| | - Meghnath Pokharel
- Department of Agronomy, Kansas State University, 1712 Claflin Road, Manhattan, KS, 66506-5501, USA
| | - Anuj Chiluwal
- Department of Agronomy, Kansas State University, 1712 Claflin Road, Manhattan, KS, 66506-5501, USA.,Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546, USA
| | - Jianming Fu
- Department of Agronomy, Kansas State University, 1712 Claflin Road, Manhattan, KS, 66506-5501, USA
| | - Dhanush S Srikanthan
- Department of Agronomy, Kansas State University, 1712 Claflin Road, Manhattan, KS, 66506-5501, USA
| | - Mitchell L Neilsen
- Department of Computer Science, Kansas State University, Manhattan, KS, 66506, USA
| | - S V Krishna Jagadish
- Department of Agronomy, Kansas State University, 1712 Claflin Road, Manhattan, KS, 66506-5501, USA.
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41
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Fatima Z, Ahmed M, Hussain M, Abbas G, Ul-Allah S, Ahmad S, Ahmed N, Ali MA, Sarwar G, Haque EU, Iqbal P, Hussain S. The fingerprints of climate warming on cereal crops phenology and adaptation options. Sci Rep 2020; 10:18013. [PMID: 33093541 PMCID: PMC7581754 DOI: 10.1038/s41598-020-74740-3] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Accepted: 10/06/2020] [Indexed: 12/23/2022] Open
Abstract
Growth and development of cereal crops are linked to weather, day length and growing degree-days (GDDs) which make them responsive to the specific environments in specific seasons. Global temperature is rising due to human activities such as burning of fossil fuels and clearance of woodlands for building construction. The rise in temperature disrupts crop growth and development. Disturbance mainly causes a shift in phenological development of crops and affects their economic yield. Scientists and farmers adapt to these phenological shifts, in part, by changing sowing time and cultivar shifts which may increase or decrease crop growth duration. Nonetheless, climate warming is a global phenomenon and cannot be avoided. In this scenario, food security can be ensured by improving cereal production through agronomic management, breeding of climate-adapted genotypes and increasing genetic biodiversity. In this review, climate warming, its impact and consequences are discussed with reference to their influences on phenological shifts. Furthermore, how different cereal crops adapt to climate warming by regulating their phenological development is elaborated. Based on the above mentioned discussion, different management strategies to cope with climate warming are suggested.
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Affiliation(s)
- Zartash Fatima
- Department of Agronomy, Bahauddin Zakariya University, Multan, 60800, Pakistan
| | - Mukhtar Ahmed
- Department of Agricultural Research for Northern Sweden, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.
- Department of Agronomy, Pir Mehr Ali Shah, Arid Agriculture University, Rawalpindi, 46300, Pakistan.
| | - Mubshar Hussain
- Department of Agronomy, Bahauddin Zakariya University, Multan, 60800, Pakistan
- Agriculture Discipline, College of Science Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia
| | - Ghulam Abbas
- Department of Agronomy, Bahauddin Zakariya University, Multan, 60800, Pakistan
| | - Sami Ul-Allah
- College of Agriculture, Bahauddin Zakariya University, Bahadur Sub-campus, Layyah, 31200, Pakistan
| | - Shakeel Ahmad
- Department of Agronomy, Bahauddin Zakariya University, Multan, 60800, Pakistan.
| | - Niaz Ahmed
- Department of Soil Science, Bahauddin Zakariya University, Multan, 60800, Pakistan
| | - Muhammad Arif Ali
- Department of Soil Science, Bahauddin Zakariya University, Multan, 60800, Pakistan
| | - Ghulam Sarwar
- Cotton Botanist, Cotton Research Station, Ayub Agricultural Research Institute, Faisalabad, 38000, Pakistan
| | - Ehsan Ul Haque
- Citrus Research Institute Sargodha, Sargodha, 40100, Pakistan
| | - Pakeeza Iqbal
- Department of Botany, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Sajjad Hussain
- Department of Horticulture, Bahauddin Zakariya University, Multan, Pakistan
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42
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Jacott CN, Boden SA. Feeling the heat: developmental and molecular responses of wheat and barley to high ambient temperatures. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:5740-5751. [PMID: 32667992 PMCID: PMC7540836 DOI: 10.1093/jxb/eraa326] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2020] [Accepted: 07/10/2020] [Indexed: 05/22/2023]
Abstract
The increasing demand for global food security in the face of a warming climate is leading researchers to investigate the physiological and molecular responses of cereals to rising ambient temperatures. Wheat and barley are temperate cereals whose yields are adversely affected by high ambient temperatures, with each 1 °C increase above optimum temperatures reducing productivity by 5-6%. Reproductive development is vulnerable to high-temperature stress, which reduces yields by decreasing grain number and/or size and weight. In recent years, analysis of early inflorescence development and genetic pathways that control the vegetative to floral transition have elucidated molecular processes that respond to rising temperatures, including those involved in the vernalization- and photoperiod-dependent control of flowering. In comparison, our understanding of genes that underpin thermal responses during later developmental stages remains poor, thus highlighting a key area for future research. This review outlines the responses of developmental genes to warmer conditions and summarizes our knowledge of the reproductive traits of wheat and barley influenced by high temperatures. We explore ways in which recent advances in wheat and barley research capabilities could help identify genes that underpin responses to rising temperatures, and how improved knowledge of the genetic regulation of reproduction and plant architecture could be used to develop thermally resilient cultivars.
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Affiliation(s)
- Catherine N Jacott
- Department of Crop Genetics, John Innes Centre, Colney Lane, Norwich, UK
| | - Scott A Boden
- Department of Crop Genetics, John Innes Centre, Colney Lane, Norwich, UK
- School of Agriculture, Food and Wine, Waite Research Institute, Waite Research Precinct, University of Adelaide, Glen Osmond, SA, Australia
- Correspondence:
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