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For: Franceschi P, Giordan M, Wehrens R. Multiple comparisons in mass-spectrometry-based -omics technologies. Trends Analyt Chem 2013. [DOI: 10.1016/j.trac.2013.04.011] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Number Cited by Other Article(s)
1
Comparison of chemometric strategies for potential exposure marker discovery and false-positive reduction in untargeted metabolomics: application to the serum analysis by LC-HRMS after intake of Vaccinium fruit supplements. Anal Bioanal Chem 2022;414:1841-1855. [PMID: 35028688 DOI: 10.1007/s00216-021-03815-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Revised: 11/18/2021] [Accepted: 11/30/2021] [Indexed: 11/01/2022]
2
Menyhart O, Weltz B, Győrffy B. MultipleTesting.com: A tool for life science researchers for multiple hypothesis testing correction. PLoS One 2021;16:e0245824. [PMID: 34106935 PMCID: PMC8189492 DOI: 10.1371/journal.pone.0245824] [Citation(s) in RCA: 79] [Impact Index Per Article: 19.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Accepted: 05/14/2021] [Indexed: 11/18/2022]  Open
3
Pasias IN, Theodorou K, Raptopoulou KG, Evaggelaras C, Floros G, Ladavos A, Asimakopoulos AG, Calokerinos AC, Proestos C. Rapid, Low-Cost Spectrophotometric Characterization of Olive Oil Quality to Meet Newly Implemented Compliance Requirements. ANAL LETT 2021. [DOI: 10.1080/00032719.2021.1925679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
4
Prasad M, Postma G, Franceschi P, Morosi L, Giordano S, Falcetta F, Giavazzi R, Davoli E, Buydens LMC, Jansen J. A methodological approach to correlate tumor heterogeneity with drug distribution profile in mass spectrometry imaging data. Gigascience 2020;9:giaa131. [PMID: 33241286 PMCID: PMC7688471 DOI: 10.1093/gigascience/giaa131] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 08/28/2020] [Accepted: 11/01/2020] [Indexed: 01/10/2023]  Open
5
Fox A, Dutt TS, Karger B, Rojas M, Obregón-Henao A, Anderson GB, Henao-Tamayo M. Cyto-Feature Engineering: A Pipeline for Flow Cytometry Analysis to Uncover Immune Populations and Associations with Disease. Sci Rep 2020;10:7651. [PMID: 32377001 PMCID: PMC7203241 DOI: 10.1038/s41598-020-64516-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Accepted: 04/13/2020] [Indexed: 12/04/2022]  Open
6
Wu HY, Ma MC, Pan YY, Shih CL, Zgoda V, Li CS, Lin LC, Liao PC. Assessing the Similarity between Random Copolymer Drug Glatiramer Acetate by Using LC-MS Data Coupling with Hypothesis Testing. Anal Chem 2019;91:14281-14289. [PMID: 31590482 DOI: 10.1021/acs.analchem.9b02488] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
7
Hamid Z, Basit A, Pontis S, Piras F, Assogna F, Bossù P, Pontieri FE, Stefani A, Spalletta G, Franceschi P, Reggiani A, Armirotti A. Gender specific decrease of a set of circulating N-acylphosphatidyl ethanolamines (NAPEs) in the plasma of Parkinson's disease patients. Metabolomics 2019;15:74. [PMID: 31053995 PMCID: PMC6499742 DOI: 10.1007/s11306-019-1536-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/17/2018] [Accepted: 04/25/2019] [Indexed: 11/11/2022]
8
Albanese D, Riccadonna S, Donati C, Franceschi P. A practical tool for maximal information coefficient analysis. Gigascience 2018;7:1-8. [PMID: 29617783 PMCID: PMC5893960 DOI: 10.1093/gigascience/giy032] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Accepted: 03/22/2018] [Indexed: 01/03/2023]  Open
9
Ulaszewska MM, Weinert CH, Trimigno A, Portmann R, Andres Lacueva C, Badertscher R, Brennan L, Brunius C, Bub A, Capozzi F, Cialiè Rosso M, Cordero CE, Daniel H, Durand S, Egert B, Ferrario PG, Feskens EJM, Franceschi P, Garcia-Aloy M, Giacomoni F, Giesbertz P, González-Domínguez R, Hanhineva K, Hemeryck LY, Kopka J, Kulling SE, Llorach R, Manach C, Mattivi F, Migné C, Münger LH, Ott B, Picone G, Pimentel G, Pujos-Guillot E, Riccadonna S, Rist MJ, Rombouts C, Rubert J, Skurk T, Sri Harsha PSC, Van Meulebroek L, Vanhaecke L, Vázquez-Fresno R, Wishart D, Vergères G. Nutrimetabolomics: An Integrative Action for Metabolomic Analyses in Human Nutritional Studies. Mol Nutr Food Res 2018;63:e1800384. [PMID: 30176196 DOI: 10.1002/mnfr.201800384] [Citation(s) in RCA: 154] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Revised: 07/10/2018] [Indexed: 12/13/2022]
10
Klampfl CW. Ambient mass spectrometry in foodomics studies. Curr Opin Food Sci 2018. [DOI: 10.1016/j.cofs.2018.03.014] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
11
Hits and misses in research trends to monitor contaminants in foods. Anal Bioanal Chem 2018;410:5331-5351. [DOI: 10.1007/s00216-018-1195-3] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2018] [Revised: 05/31/2018] [Accepted: 06/12/2018] [Indexed: 01/26/2023]
12
Jaeger C, Lisec J. Statistical and Multivariate Analysis of MS-Based Plant Metabolomics Data. Methods Mol Biol 2018;1778:285-296. [PMID: 29761446 DOI: 10.1007/978-1-4939-7819-9_20] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
13
Saw NMMT, Moser C, Martens S, Franceschi P. Applying generalized additive models to unravel dynamic changes in anthocyanin biosynthesis in methyl jasmonate elicited grapevine (Vitis vinifera cv. Gamay) cell cultures. HORTICULTURE RESEARCH 2017;4:17038. [PMID: 28758015 PMCID: PMC5527128 DOI: 10.1038/hortres.2017.38] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Revised: 06/07/2017] [Accepted: 06/30/2017] [Indexed: 05/26/2023]
14
Kim YJ, Huh I, Kim JY, Park S, Ryu SH, Kim KB, Kim S, Park T, Kwon O. Integration of Traditional and Metabolomics Biomarkers Identifies Prognostic Metabolites for Predicting Responsiveness to Nutritional Intervention against Oxidative Stress and Inflammation. Nutrients 2017;9:nu9030233. [PMID: 28273855 PMCID: PMC5372896 DOI: 10.3390/nu9030233] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Revised: 02/19/2017] [Accepted: 02/28/2017] [Indexed: 01/01/2023]  Open
15
Carlin S, Vrhovsek U, Franceschi P, Lotti C, Bontempo L, Camin F, Toubiana D, Zottele F, Toller G, Fait A, Mattivi F. Regional features of northern Italian sparkling wines, identified using solid-phase micro extraction and comprehensive two-dimensional gas chromatography coupled with time-of-flight mass spectrometry. Food Chem 2016;208:68-80. [PMID: 27132825 DOI: 10.1016/j.foodchem.2016.03.112] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Revised: 03/18/2016] [Accepted: 03/29/2016] [Indexed: 11/28/2022]
16
Yu Y, Skočaj M, Kreft ME, Resnik N, Veranič P, Franceschi P, Sepčić K, Guella G. Comparative lipidomic study of urothelial cancer models: association with urothelial cancer cell invasiveness. MOLECULAR BIOSYSTEMS 2016;12:3266-3279. [DOI: 10.1039/c6mb00477f] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
17
Franceschi P, Mylonas R, Shahaf N, Scholz M, Arapitsas P, Masuero D, Weingart G, Carlin S, Vrhovsek U, Mattivi F, Wehrens R. MetaDB a Data Processing Workflow in Untargeted MS-Based Metabolomics Experiments. Front Bioeng Biotechnol 2014;2:72. [PMID: 25566535 PMCID: PMC4267269 DOI: 10.3389/fbioe.2014.00072] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2014] [Accepted: 11/30/2014] [Indexed: 12/15/2022]  Open
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