Bioponic system for nitrogen and phosphorus recovery from chicken manure: Evaluation of manure loading and microbial communities

Assessing nitrogen recovery in poultryponics for hydroponic lettuce production using treated poultry processing wastewater for increased nitrogen neutrality

Poultry processing wastewater (PPW) is a nutrient-rich effluent suitable for hydroponic irrigation. A nitrogen mass balance was developed for a pilot-scale poultryponics system comprising bioreactors (algal-bacteria consortium vs. bacteria only), clarifiers, filters, UV disinfection and hydroponic grow beds to assess N recovery and lettuce production on treated PPW. Lettuce cultivated on treated PPW showed 5 ± 1 % higher root biomass, 58 ± 10 % lower shoot growth, and nutrient deficiency (K, Mg, Ca, Cu) compared to mineral fertilizer treatments (p < 0.05). pH control (pH = 7.0) and nutrient supplementation (N, P, K and micronutrients) mitigated growth inhibition. Nitrogen was not limiting, as nitrogen utilization efficiency ranged from 3.7 %-6.3 %, with 65.4 %-83.0 % of input nitrogen (∼213 g N) remaining in effluents, indicating the potential for a larger plant production system. These findings highlight the importance of targeted nutrient supplementation to enhance lettuce growth on treated PPW, while balancing nitrogen supply with plant demands.

Dosing Salmonella into poultryponics: Fate of Salmonella during treatment of poultry processing wastewater and irrigation of hydroponic lettuce

"Poultryponics" is a bioponics system that treats poultry processing wastewater (PPW) for hydroponic irrigation. Effective pathogen removal is an under-studied barrier to advancing bioponics technology. This study evaluated the system's capacity to manage high exogenous doses of three Salmonella serotypes commonly associated with poultry. The poultryponics treatment train, operating at ∼115 liters d-1, consisted of bioreactors (algal vs. bacterial), clarifiers, membrane filters, UV disinfection, water storage reservoir, and hydroponic grow beds. The fate of Salmonella spp. in the system was evaluated by analyzing water and lettuce samples for Salmonella contamination across three experimental stages: pre-inoculation (days 0-10), inoculation (days 11-20), and recovery (days 21-30). During the inoculation phase, bioreactors were spiked daily at levels significantly higher than those typically detected in PPW (<1 log10 CFU mL -1Salmonella). When challenged at 3 log10 CFU mL -1, the Salmonella levels observed in the algal and bacterial bioreactors were 0.6 and 1.4 log10 CFU mL -1, representing a 99.6% and 97.5% reduction, respectively (p = 0.03). UV disinfection eliminated Salmonella from water samples, with no Salmonella detection in lettuce. At the 5 log10 CFU mL -1 dosage, Salmonella counts in bioreactor effluent were reduced to approximately 3 log10 CFU mL -1 by day 15 of inoculation (99% reduction). However, as Salmonella dosage continued, removal efficiency decreased, with Salmonella detection after UV treatment but not in grow beds or lettuce. This study confirms the effectiveness of the poultryponics system in managing Salmonella under extreme contamination scenarios.

Pilot-Scale Evaluation of Poultryponics: Insights into Nitrogen Utilization and Food Pathogen Dynamics

Poultry processing wastewater (PPW) is a nutrient-rich effluent with the potential for reuse in crop irrigation. This study investigated transforming PPW into a hydroponic nutrient solution using a pilot scale "poultryponics" system operated continuously for 222 days. The system treated ∼57 L d-1 of real PPW and consisted of bioreactors (inoculated with a consortium of microalgae and nitrifying bacteria), clarifiers, membrane filters, a UV disinfection unit, and a deep-water hydroponic system. The system was evaluated in terms of nitrogen transformation, organic removal efficiency, and pathogen levels. Although soluble organic removal efficiencies (sCOD) were high (>80%) in all bioreactors, nitrification was limited due to high organic loading (350-800 mg sCOD L-1), relatively short retention time (24 h), and low dissolved oxygen levels (<3.5 mg O2 L-1). Grow beds showed significant nitrification, indicating the importance of upstream organic removal. CO2 supplementation (0.5% v/v) in bioreactors did not promote nitrification in the bioreactors but was beneficial for nitrification in grow beds due to pH-modulating effects. Microbiological analyses showed no Salmonella detection in bioreactors and substantial reductions in total coliform (∼40%) and aerobic plate counts (∼30%) after UV treatment. These findings demonstrate the sustainable and safe reuse of nutrient-rich industrial effluents in agriculture.

Intricate microbe-plant-metabolic remodeling mediated by intercropping enhances the quality of Panax quinquefolius L

Improving the cultivation mode and technology for traditional Chinese medicine has become important for its sustainable development. Monoculture enhances plant diseases, which decreases yield and quality. Intercropping is an effective measure to counterbalance that negative effect. In this study, we focused on Panax quinquefolium L. (ginseng) and four treatments were set up: the control without intercropping, P. quinquefolius + ryegrass (Lolium perenne L.), P. quinquefolius + red clover (Trifolium pratense L.), and P. quinquefolius + ryegrass + red clover. An LC-MS/MS system was used to detect the changes in the P. quinquefolius secondary metabolites, and high-throughput sequencing technology was used to determine the changes in the P. quinquefolius' rhizosphere soil microorganisms. Ginsenoside content, soil enzyme activities, and arbuscular mycorrhizal infection rate of P. quinquefolius were also measured using HPLC, ELISA kits, and microscopy, respectively. Co-intertia and Pearson's analysis were performed to explore the relationship between the metabolites and the P. quinquefolius microorganisms. Intercropping significantly increased the content of ginsenoside metabolites and recruited a large number of beneficial bacteria to the P. quinquefolius rhizosphere. The P. quinquefolius secondary metabolites were associated with the rhizosphere microbial community. For example, the dominant microorganisms, such as Acidobacteriota and Chloroflexi, played a key role in promoting the synthesis of ginsenoside Rd and (20R) ginsenoside Rg3 by P. quinquefolius. Intercropping led to changes in the P. quinquefolius secondary metabolites by driving and reshaping the rhizosphere microorganisms. These findings revealed the potential application of intercropping for improving the quality of P. quinquefolius.

Food wastewater treatment using a hybrid biofilm reactor: nutrient removal performance and functional microorganisms on filler biofilm and suspended sludge

In this study, a laboratory-scale hybrid biofilm reactor (HBR) was constructed to treat food wastewater (FWW) before it is discharged into the sewer. The chemical oxygen demand (COD) of 29 860 mg L-1 in FWW was degraded to 200-350 mg L-1 using the HBR under the operating parameters of COD load 1.68 kg m-3 d-1, hydraulic retention time (HRT) of 426.63 h, dissolved oxygen (DO) of 8-9 mg L-1, and temperature of 22-23 °C. The biomass of biofilm on the surface of filler was 2.64 g L-1 for column A and 0.91 g L-1 for column O. Microbial analysis revealed richer and more diverse microorganisms in filler biofilms compared to those in suspended sludge. The hybrid filler was conducive to the development of functional microbial species, including phyla Firmicutes, Actinobacteriota, and Chloroflexi, and genus level norank_f_JG30-KF-CM45, which will improve FWW treatment efficiency. Moreover, the microorganisms on the filler biofilm had more connections and relationships than those in the suspended sludge. The combination of an up-flow anaerobic sludge bed (UASB) and HBR was demonstrated to be an economical strategy for practical applications as a shorter HRT of 118.34 h could be obtained. Overall, this study provides reliable data and a theoretical basis for the application of HBR and FWW treatments.

Assessing the quality and eco-beneficial microbes in the use of silkworm excrement compost

Sericulture has become widespread globally, and the utilization of artificial diets produces a substantial quantity of silkworm excrement. Although silkworm excrement can be composted for environmentally friendly disposal, the potential utility of the resulting compost remains underexplored. The aim of this study was to assess the quality of this unique compost and screen for eco-beneficial microbes, providing a new perspective on microbial research in waste management, especially in sustainable agriculture. The low-concentration compost application exhibited a greater plant growth-promoting effect, which was attributed to an appropriate nutritional value (N, P, K, and dissolved organic matter) and the presence of plant growth-promoting bacteria (PGPB) within the compost. Encouraged by the "One Health" concept, the eco-benefits of potent PGPB, namely, Klebsiella pneumoniae and Bacillus licheniformis, in sericulture were further evaluated. For plants, K. pneumoniae and B. licheniformis increased plant weight by 152.44 % and 130.91 %, respectively. We also found that even a simple synthetic community composed of the two bacteria performed better than any single bacterium. For animals, K. pneumoniae significantly increased the silkworm (Qiufeng × Baiyu strain) cocoon shell weight by 111.94 %, which could increase sericulture profitability. We also elucidated the mechanism by which K. pneumoniae assisted silkworms in degrading tannic acid, a common plant-derived antifeedant, thereby increasing silkworm feed efficiency. Overall, these findings provide the first data revealing multiple beneficial interactions among silkworm excrement-derived microbes, plants, and animals, highlighting the importance of focusing on microbes in sustainable agriculture.

Response of phosphorus fractions transformation and microbial community to carbon-to-phosphorus ratios during sludge composting

Phosphorus (P) is one of the essential nutrient elements for plant growth and development. Sludge compost products can be used as an important source of soil P to solve the shortage of soil P. The difference in the initial carbon-to-phosphorus ratio (C/P) will lead to difference in the bacterial community, which would affect the biological pathway of P conversion in composting. However, few studies have been reported on adjusting the initial C/P of composting to explore P conversion. Therefore, this study investigated the response of P component transformations, bacterial community and P availability to C/P during sludge composting by adjusting initial C/P. The results showed that increasing C/P promoted the mineralization of organic P and significantly increased the content of the labile P. High C/P also increased the relative content of available P, especially when the C/P was at 45 and 60, it reached 60.51% and 60.47%. High C/P caused differences in the community structure, and improved the binding ability of microbial network modules and the competitiveness of microbial communities. Additionally, high C/P strengthened the effect of microbial communities on the transformation of P components. Finally, the study showed that C/P was the main contributor to P content variation (64.7%) and indirectly affected P component conversion by affecting the microbial community. Therefore, adjusting the C/P is crucial to improve the P utilization rate of composting products.

Bioponic systems with biochar: Insights into nutrient recovery, heavy metal reduction, and microbial interactions in digestate-based bioponics

Bioponics is a nutrient-recovery technology that transforms nutrient-rich organic waste into plant biomass/bioproducts. Integrating biochar with digestate from anaerobic wastewater treatment process can improve resource recovery while mitigating heavy metal contamination. The overarching goal of this study was to investigate the application of biochar in digestate-based bioponics, focusing on its efficacy in nutrient recovery and heavy metal removal, while also exploring the microbial community dynamics. In this study, biochar was applied at 50 % w/w with 500 g dry weight of digestate during two 28-day crop cycles (uncontrolled pH and pH 5.5) using white stem pak choi (Brassica rapa var. chinensis) as a model crop. The results showed that the digestate provided sufficient phosphorus and nitrogen, supporting plant growth. Biochar amendment improved plant yield and phosphate solubilization and reduced nitrogen loss, especially at the pH 5.5. Furthermore, biochar reduced the heavy metal accumulation in plants, while concentrating these metals in the residual sludge. However, owing to potential non-carcinogenic and carcinogenic health risks, it is still not recommended to directly consume plants cultivated in digestate-based bioponic systems. Additionally, biochar amendment exhibited pronounced impact on the microbial community, promoting microbes responsible for nutrient solubilization and cycling (e.g., Tetrasphaera, Herpetosiphon, Hyphomicrobium, and Pseudorhodoplanes) and heavy metal stabilization (e.g., Leptolinea, Fonticella, Romboutsia, and Desulfurispora) in both the residual sludge and plants. Overall, the addition of biochar enhanced the microbial community and facilitated the metal stabilization and the cycling of nutrients within both residual sludge and root systems, thereby improving the overall efficiency of the bioponics.

Microbiome study of a coupled aquaponic system: unveiling the independency of bacterial communities and their beneficial influences among different compartments

To understand the microbiome composition and interplay among bacterial communities in different compartments of a coupled freshwater aquaponics system growing flathead grey mullet (Mugil cephalus) and lettuces (Lactuca sativa), 16S rRNA gene amplicon sequencing of the V3-V4 region was analysed from each compartment (fish intestine, water from the sedimentation tank, bioballs from the biological filter, water and biofilm from the hydroponic unit, and lettuce roots). The bacterial communities of each sample group showed a stable diversity during all the trial, except for the fish gut microbiota, which displayed lower alpha diversity values. Regarding beta diversity, the structure of bacterial communities belonging to the biofilm adhering to the hydroponic tank walls, bioballs, and lettuce roots resembled each other (weighted and unweighted UniFrac distances), while bacteria from water samples also clustered together. However, both of the above-mentioned bacterial communities did not resemble those of fish gut. We found a low or almost null number of shared Amplicon Sequence Variants (ASVs) among sampled groups which indicated that each compartment worked as an independent microbiome. Regarding fish health and food safety, the microbiome profile did not reveal neither fish pathogens nor bacterial species potentially pathogenic for food health, highlighting the safety of this sustainable food production system.

Effects of vermicompost leachate on nitrogen, phosphorus, and microbiome in a food waste bioponic system

Food waste is rich in nutrients, such as nitrogen and phosphorus, and can be integrated with bioponics, a closed-loop agricultural system that combines hydroponics with biological nutrient recovery. Vermicompost leachate (VCL) supplementation has been shown to improve the co-composting of organic waste (i.e., compost quality) and the biodegradation of organic compounds. Thus, VCL has high potential for enhancing nutrient availability in bioponics from food waste. However, the understanding of nitrogen and phosphorus availability in food waste-based bioponics is limited, both with and without VCL. In this study, food waste derived from cafeteria vegetable waste was used as the substrate (500 g dry wt./system) in bioponics to grow lettuce (Lactuca sativa L.) for two consecutive cycles (35 days/cycle) without substrate replacement. VCL was applied weekly (1-5% v/v) and compared to the control without VCL. The results showed that the food waste in bioponics provided nitrogen and phosphorus for plant growth (15.5-65.8 g/lettuce head). Organic-degrading and nutrient-transforming bacteria (Hydrogenispora, Clostridium_sensu_stricto_1, Ruminiclostridium_1, Cellvibrio, Thauera, Hydrogenophaga, and Bacillus) were predominantly found in plant roots and residual food waste. VCL addition significantly increased nitrate, phosphate, and chemical oxygen demand levels in bioponics, owing to the nutrients in VCL and the enhancement of keystone microorganisms responsible for organic degradation and nutrient cycling (e.g., Ellin6067, Actinomyces, and Pirellula). These findings suggest that nitrogen, phosphorus, and organic carbon concentrations in an ecosystem of nutrient-transforming and organic-degrading microbes are key in managing nutrient recovery from food waste in bioponics.

Co-composting of faecal sludge and carbon-rich wastes in the earthworm's synergistic cooperation system: Performance, global warming potential and key microbiome

Composting is an effective alternative for recycling faecal sludge into organic fertilisers. A microflora-earthworm (Eisenia fetida) synergistic cooperation system was constructed to enhance the composting efficiency of faecal sludge. The impact of earthworms and carbon-rich wastes (rice straw (RS) and sawdust (S)) on compost properties, greenhouse gas emissions, and key microbial species of composting were evaluated. The addition of RS or S promoted earthworm growth and reproduction. The earthworm-based system reduced the volatile solid of the final substrate by 13.19-16.24 % and faecal Escherichia coli concentrations by 1.89-3.66 log10 cfu/g dry mass compared with the earthworm-free system. The earthworm-based system increased electrical conductivity by 0.322-1.402 mS/cm and reduced C/N by 56.16-64.73 %. The NH₄⁺:NO₃^- ratio of the final faecal sludge and carbon-rich waste was <0.16. The seed germination index was higher than 80 %. These results indicate that earthworms contribute to faecal sludge maturation. Earthworm addition reduced CO₂ production. The simultaneous addition of earthworms and RS system (FRS2) resulted in the lowest global warming potential (GWP). The microbial diversity increased significantly over time in the RS-only system, whereas it initially increased and later decreased in the FRS2 system. Cluster analysis revealed that earthworms had a more significant impact on the microbial community than the addition of carbon-rich waste. Co-occurrence networks for earthworm-based systems were simple than those for earthworm-free systems, but the major bacterial genera were more complicated. Highly abundant key species (norank_f_Chitinophagaceae and norank_f_Gemmatimonadaceae) are closely related. Microbes may be more cooperative than competitive, facilitating the conversion of carbon and nitrogen in earthworm-based systems. This work has demonstrated that using earthworms is an effective approach for promoting the efficiency of faecal sludge composting and reducing GWP.

Recovery trajectories of the bacterial community at distances in the receiving river under wastewater treatment plant discharge

Microbes in rivers are an important part of the biogeochemical cycle in aquatic ecosystems, and understanding the major factors that influence the composition of microbial communities has an important role in assessing and improving ecosystem functioning. A high-throughput 16 S rRNA gene sequencing technique was employed to sequence bacterial communities in 21 sediment samples and 21 water samples from an urban river WWTP (wastewater treatment plant) discharge. A systematic study of changes in bacterial community composition in downstream river sediment and water was conducted. The study found that compared with the bacterial diversity in the natural upstream area of the wastewater outfall, the bacterial diversity in the sediment lower reaches decreased significantly, while the bacterial abundance and diversity in the water increased significantly. The Mantel test and redundancy analysis showed that the downstream distance and physicochemical properties were significantly related to the succession of bacterial communities in the sediment downstream of the WWTP discharge. Among them, TOC (total organic carbon) was the most important factor affecting the change in the bacterial community in the downstream sediment. The physicochemical properties were significantly correlated with the succession of bacterial communities in the water downstream of the WWTP discharge. Among them, TN (total nitrogen), PO₄^3--P (phosphorus phosphate) and TP (total phosphorus) were the main factors that affected the change in the bacterial community in the downstream water. Key taxa in the co-occurrence network at different distances downstream reflected the depth of the effect of the WWTP effluent on the bacterial community. The bacterial community in the lower reaches of the river sediment showed a strong recovery ability under the influence of pollutants, while the bacterial community in the lower reaches of the river water was difficult to recover under the influence of pollutants. In general, pollutants contained in effluent are the key to changing the composition of bacterial communities in the lower reaches of the river, but exogenous bacteria in effluent are not. This study provides a basis for further improving the effluent discharge standards of WWTPs in the future.

Effects of Different Fertilizers on Soil Microbial Diversity during Long-Term Fertilization of a Corn Field in Shanghai, China

The long-term applications of different fertilizers (chicken manure, swine manure, and organic fertilizer) on the microorganisms of a corn field were investigated. The microbial communities during four periods (seedling, three-leaf, filling and mature periods) were comprehensively studied with molecular biology technology. Results showed that most nutrient contents (organic matter, nitrogen, phosphorus, and potassium) and levels of several heavy metals (As, Pb, and Cr) in the chicken and swine manures were higher than those in the organic fertilizer. The alpha diversity varied during the long-term fertilization, and the chicken manure was the best fertilizer to maintain the abundance of microorganisms. The microbial community of soil changes over time, regardless of the addition of different fertilizers. The correlations between environmental factors and microbial communities revealed that nutrient substances (available nitrogen, available potassium, and NO3-N) were the most significant characteristics with the chicken and swine manures, while organic matter and nitrogen exhibited similar effects on the microbial structure with the organic fertilizer. The Pearson correlations of environmental factors on genus were significantly different in the organic fertilizer tests compared with the others, and Pseudomonas, Methyloligellaceae, Flavobacterium, and Bacillus showed significant correlations with the organic matter. This study will provide a theoretical basis for improving land productivity and sustainable development in corn fields.

Effects of Cu and Zn contamination on chicken manure-based bioponics: Nitrogen recovery, bioaccumulation, microbial community, and health risk assessment

In bioponics, although chicken manure is an efficient substrate for vegetable production and nitrogen recovery, it is often contaminated with high Cu and Zn levels, which could potentially cause bioaccumulation in plants and pose health risks. The objectives of this study were to assess nitrogen recovery in lettuce- and pak choi-based bioponics with Cu (50-150 mg/kg) and Zn (200-600 mg/kg) supplementation, as well as their bioaccumulation in plants, root microbial community, and health risk assessment. The supplementation of Cu and Zn did not affect nitrogen concentrations and plant growth (p > 0.05) but reduced nitrogen use efficiency. Pak choi showed higher Cu and Zn bioconcentration factors than lettuce. Bacterial genera Ruminiclostridium and WD2101_soil_group in lettuce roots and Mesorhizobium in pak choi roots from Cu and Zn supplemented conditions were significantly higher (p < 0.05) than controls, suggesting microbial biomarkers in plant roots from Cu and Zn exposure bioponics depended on plant type. Health risk assessment herein revealed that consumption of bioponic vegetables with Cu and Zn contamination does not pose long-term health risks (hazard index <1) to children or adults, according to the US EPA. This study suggested that vegetable produced from chicken manure-based bioponics has low health risk in terms of Cu and Zn bioaccumulation and could be applied in commercial-scale system for nutrient recovery from organic waste to vegetable production; however, health risk from other heavy metals and xenobiotic compounds must be addressed.

Chicken manure-based bioponics: Effects of acetic acid supplementation on nitrogen and phosphorus recoveries and microbial communities

Bioponics has the potential to recover nutrients from organic waste streams, such as chicken manure and digestate with high volatile fatty acid (VFA) contents through crop production. Acetic acid, a dominant VFA, was supplemented weekly (0, 500, 1000, and 1500 mg/L) in a chicken manure-based bioponic system, and its effect on the performance of bioponics (e.g., plant yield and nitrogen and phosphorus availabilities) was examined. Microbial communities were analyzed using 16S rRNA gene sequencing, and the functional gene abundances were predicted using PICRUSt. Although acetic acid negatively affected plant yield, no significant difference (p > 0.05) was noted in the average nitrogen or phosphorus concentration. In terms of nutrient recovery, the bioponic systems still functioned well, although higher concentrations of acetic acid decreased plant yield and altered the bacterial communities in plant roots and chicken manure sediments. These data suggest that an acetic acid concentration of < 500 mg/L or a longer loading interval is recommended for the effective operation of chicken manure and digestate-based bioponics.

Mix-cultured aerobic denitrifying bacterial communities reduce nitrate: Novel insights in micro-polluted water treatment at lower temperature

Three mix-cultured aerobic denitrifiers were screened from a source water reservoir and named HE1, HE3 and SU4. Approximately 72.9%, 68.6% and 66.2% of nitrate were effectively removed from basal medium, respectively, after 120 h of cultivation at 8 °C. The nitrogen balance analysis revealed about one-fifth of the initial nitrogen was converted into gaseous denitrification products. According to the results of Biolog, the three microfloras had high metabolic capacity to carbon sources. The dominant genera were Pseudomonas and Paracoccus in these bacterial communities based on nirS gene sequencing. Response surface methodology elucidated that the denitrification rates of identified bacteria reached the maximum under the following optimal parameters: C/N ratio of 7.51-8.34, pH of 8.03-8.09, temperature of 18.03-20.19 °C, and shaking speed of 67.04-120 rpm. All results suggested that screened aerobic denitrifiers could potentially be applied to improve the source water quality at low temperature.

Nature-Based Solutions for Agriculture in Circular Cities: Challenges, Gaps, and Opportunities

Urban agriculture (UA) plays a key role in the circular metabolism of cities, as it can use water resources, nutrients, and other materials recovered from streams that currently leave the city as solid waste or as wastewater to produce new food and biomass. The ecosystem services of urban green spaces and infrastructures and the productivity of specific urban agricultural technologies have been discussed in literature. However, the understanding of input and output (I/O) streams of different nature-based solutions (NBS) is not yet sufficient to identify the challenges and opportunities they offer for strengthening circularity in UA. We propose a series of agriculture NBS, which, implemented in cities, would address circularity challenges in different urban spaces. To identify the challenges, gaps, and opportunities related to the enhancement of resources management of agriculture NBS, we evaluated NBS units, interventions, and supporting units, and analyzed I/O streams as links of urban circularity. A broader understanding of the food-related urban streams is important to recover resources and adapt the distribution system accordingly. As a result, we pinpointed the gaps that hinder the development of UA as a potential opportunity within the framework of the Circular City.