Control of start-up and operation of anaerobic biofilm reactors: an overview of 15 years of research

Global WWTP Microbiome-based Integrative Information Platform: From experience to intelligence

Domestic and industrial wastewater treatment plants (WWTPs) are facing formidable challenges in effectively eliminating emerging pollutants and conventional nutrients. In microbiome engineering, two approaches have been developed: a top-down method focusing on domesticating seed microbiomes into engineered ones, and a bottom-up strategy that synthesizes engineered microbiomes from microbial isolates. However, these approaches face substantial hurdles that limit their real-world applicability in wastewater treatment engineering. Addressing this gap, we propose the creation of a Global WWTP Microbiome-based Integrative Information Platform, inspired by the untapped microbiome and engineering data from WWTPs and advancements in artificial intelligence (AI). This open platform integrates microbiome and engineering information globally and utilizes AI-driven tools for identifying seed microbiomes for new plants, providing technical upgrades for existing facilities, and deploying microbiomes for accidental pollution remediation. Beyond its practical applications, this platform has significant scientific and social value, supporting multidisciplinary research, documenting microbial evolution, advancing Wastewater-Based Epidemiology, and enhancing global resource sharing. Overall, the platform is expected to enhance WWTPs' performance in pollution control, safeguarding a harmonious and healthy future for human society and the natural environment.

Co-occurrence, toxicity, and biotransformation pathways of metformin and its intermediate product guanylurea: Current state and future prospects for enhanced biodegradation strategy

Accumulation of metformin and its biotransformation product "guanylurea" are posing an increasing concern due to their low biodegradability under natural attenuated conditions. Therefore, in this study, we reviewed the unavoidable function of metformin in human body and the route of its release in different water ecosystems. In addition, metformin and its biotransformation product guanylurea in aquatic environments caused certain toxic effects on aquatic organisms which include neurotoxicity, endocrine disruption, production of ROS, and acetylcholinesterase disturbance in aquatic organisms. Moreover, microorganisms are the first to expose and deal with the release of these contaminants, therefore, the mechanisms of biodegradation pathways of metformin and guanylurea under aerobic and anaerobic environments were studied. It has been reported that certain microbes, such as Aminobacter sp. and Pseudomonas putida can carry potential enzymatic pathways to degrade the dead-end product "guanylurea", and hence guanylurea is no longer the dead-end product of metformin. However, these microbes can easily be affected by certain geochemical cycles, therefore, we proposed certain strategies that can be helpful in the enhanced biodegradation of metformin and its biotransformation product guanylurea. A better understanding of the biodegradation potential is imperative to improve the use of these approaches for the sustainable and cost-effective remediation of the emerging contaminants of concern, metformin and guanylurea in the near future.

Biofilm reactors for the treatment of used water in space:potential, challenges, and future perspectives

Water is not only essential to sustain life on Earth, but also is a crucial resource for long-duration deep space exploration and habitation. Current systems in space rely on the resupply of water from Earth, however, as missions get longer and move farther away from Earth, resupply will no longer be a sustainable option. Thus, the development of regenerative reclamation water systems through which useable water can be recovered from "waste streams" (i.e., used waters) is sorely needed to further close the loop in space life support systems. This review presents the origin and characteristics of different used waters generated in space and discusses the intrinsic challenges of developing suitable technologies to treat such streams given the unique constrains of space exploration and habitation (e.g., different gravity conditions, size and weight limitations, compatibility with other systems, etc.). In this review, we discuss the potential use of biological systems, particularly biofilms, as possible alternatives or additions to current technologies for water reclamation and waste treatment in space. The fundamentals of biofilm reactors, their advantages and disadvantages, as well as different reactor configurations and their potential for use and challenges to be incorporated in self-sustaining and regenerative life support systems in long-duration space missions are also discussed. Furthermore, we discuss the possibility to recover value-added products (e.g., biomass, nutrients, water) from used waters and the opportunity to recycle and reuse such products as resources in other life support subsystems (e.g., habitation, waste, air, etc.).

Ecological mechanisms of biofilm development in the hybrid sludge-biofilm process: Implications for process start-up and optimization

The hybrid sludge-biofilm processes have been widely applied for the construction or upgradation of biological wastewater treatment process. Ecological mechanisms of biofilm development remain unclear in the hybrid ecosystem, because of the intricate interactive effects between sludge and biofilms. Herein, the establishment principles of biofilms with distinct coexisting sludge amounts were uncovered by varying sludge retention times (SRTs) from 5 to 40 days in the hybrid process. With the increasing of SRTs, biofilm biomass decreased with the increase of suspended sludge, resulting in lower biofilm proportion. As estimated by the Gompertz growth model, the increased sludge amounts (i.e., higher SRTs of 20 and 40 days) prolonged the initial colonization stage and decreased the specific development rate of biofilms when compared to lower sludge amounts with the shorter SRTs (i.e., 5 and 10 days). Null model analysis demonstrated that deterministic homogenous selection could facilitate the colonization and accumulation of biofilms with less coexisting sludge (SRT of 10 days). However, stochastic ecological drift and homogenizing dispersal dominated the colonization and accumulation stages of biofilms with more coexisting sludge (SRT of 20 days), respectively. The ecological networks reflected that positively-related taxa presented taxonomic relatedness, whereas high inconsistency of taxonomic relatedness was observed among aggregate forms or development stages as affected by varied SRTs. The high incidence of intra-taxa co-occurrence patterns suggested that taxa with similar ecological niches could be specifically selected in biofilms when being exposed with less coexisting sludge. This study uncovered ecological mechanisms of biofilm development driven by varying the SRTs of suspended sludge, which would help to propose appropriate strategies for the efficient start-up and optimization of the hybrid sludge-biofilm system.

A critical review of inverse fluidized bed reactors-start-up optimization strategies and wastewater treatment

A critical evaluation of strategies used for reducing start-up time and biological wastewater treatment using an inverse fluidized bed reactor (IFBR) was done. The start-up of an IFBR is one of the most important, time-consuming, and limiting steps in wastewater treatment using biofilm reactors. Evaluation of different strategies used by various researchers is helpful in future research works with this reactor. Different types of treated wastewater, the effect of wastewater characteristics, carriers used, and reactor hydrodynamics on the reactor performance were reviewed in detail in the first part. The second part of this review covers the use of an IFBR in the biological treatment of different wastewaters through multiple biochemical pathways and how it helped improve performance compared to other reactors. This will enable the researchers to understand the novelty of an IFBR for wastewater treatment and allow them to use it as a potential reactor.

Exploring the Function of Quorum Sensing Regulated Biofilms in Biological Wastewater Treatment: A Review

Quorum sensing (QS), a type of bacterial cell–cell communication, produces autoinducers which help in biofilm formation in response to cell population density. In this review, biofilm formation, the role of QS in biofilm formation and development with reference to biological wastewater treatment are discussed. Autoinducers, for example, acyl-homoserine lactones (AHLs), auto-inducing oligo-peptides (AIPs) and autoinducer 2, present in both Gram-negative and Gram-positive bacteria, with their mechanism, are also explained. Over the years, wastewater treatment (WWT) by QS-regulated biofilms and their optimization for WWT have gained much attention. This article gives a comprehensive review of QS regulation methods, QS enrichment methods and QS inhibition methods in biological waste treatment systems. Typical QS enrichment methods comprise adding QS molecules, adding QS accelerants and cultivating QS bacteria, while typical QS inhibition methods consist of additions of quorum quenching (QQ) bacteria, QS-degrading enzymes, QS-degrading oxidants, and QS inhibitors. Potential applications of QS regulated biofilms for WWT have also been summarized. At last, the knowledge gaps present in current researches are analyzed, and future study requirements are proposed.

Formation and Microbial Composition of Biofilms in Drip Irrigation System under Three Reclaimed Water Conditions

As the second source of water for cities, reclaimed water (RW) has become an effective solution to the problem of water scarcity in modern agriculture. However, the formation of biofilm in an RW distribution system seriously affects the performance of the system and has become a technical challenge in RW utilization. In this study, we first showed that several water quality parameters, including five-day biochemical oxygen demand (BOD5), total bacteria count (TB), total nitrogen (TN), and Cl− were the main factors affecting biofilm accumulation in the drip irrigation system (DIS), with the correlation coefficient averaging above 0.85. Second, after 392 to 490 h of system operation, the total biomass and extracellular polymer (EPS) accumulation rate of biofilms increased to a maximum of 0.72 g/m2·h and 0.027g/m2·h, respectively, making this time point a critical point for controlling biofilm accumulation and clogging of the system. Third, we examined changes in biofilm microbial composition over time on Illumina’s MiSeq platform. High throughput sequencing data showed that bacterial community structure and microbial network interaction and modularity changed significantly between 392 and 490 h, resulting in maximum microbial diversity and community richness at 490 h. Spearman correlation analyses between genera revealed that Sphingomonas and Rhodococcus promote biofilm formation due to their hydrophobicity, while Bacillus, Mariniradius, and Arthronema may inhibit biofilm formation due to their antagonistic effects on other genera. In conclusion, this work has clarified the accumulation process and compositional changes of biofilms in agriculture DIS under different RW conditions, which provides a basis for improving RW utilization efficiency and reducing system maintenance costs.

Exploring the role of microbial biofilm for industrial effluents treatment

Biofilm formation on biotic or abiotic surfaces is caused by microbial cells of a single or heterogeneous species. Biofilm protects microbes from stressful environmental conditions, toxic action of chemicals, and antimicrobial substances. Quorum sensing (QS) is the generation of autoinducers (AIs) by bacteria in a biofilm to communicate with one other. QS is responsible for the growth of biofilm, synthesis of exopolysaccharides (EPS), and bioremediation of environmental pollutants. EPS is used for wastewater treatment due to its three-dimensional matrix which is composed of proteins, polysaccharides, humic-like substances, and nucleic acids. Autoinducers mediate significantly the degradation of environmental pollutants. Acyl-homoserine lactone (AHL) producing bacteria as well as quorum quenching enzyme or bacteria can effectively improve the performance of wastewater treatment. Biofilms-based reactors due to their economic and ecofriendly nature are used for the treatment of industrial wastewaters. Electrodes coated with electro-active biofilm (EAB) which are obtained from sewage sludge, activated sludge, or industrial and domestic effluents are getting popularity in bioremediation. Microbial fuel cells are involved in wastewater treatment and production of energy from wastewater. Synthetic biological systems such as genome editing by CRISPR-Cas can be used for the advanced bioremediation process through modification of metabolic pathways in quorum sensing within microbial communities. This narrative review discusses the impacts of QS regulatory approaches on biofilm formation, extracellular polymeric substance synthesis, and role of microbial community in bioremediation of pollutants from industrial effluents.

Microbial Community Successional Changes in a Full-Scale Mesophilic Anaerobic Digester from the Start-Up to the Steady-State Conditions

Anaerobic digestion is a widely used technology for sewage sludge stabilization and biogas production. Although the structure and composition of the microbial communities responsible for the process in full-scale anaerobic digesters have been investigated, little is known about the microbial successional dynamics during the start-up phase and the response to variations occurring in such systems under real operating conditions. In this study, bacterial and archaeal population dynamics of a full-scale mesophilic digester treating activated sludge were investigated for the first time from the start-up, performed without adding external inoculum, to steady-state operation. High-throughput 16S rRNA gene sequencing was used to describe the microbiome evolution. The large majority of the reads were affiliated to fermentative bacteria. Bacteroidetes increased over time, reaching 22% of the total sequences. Furthermore, Methanosaeta represented the most abundant methanogenic component. The specific quantitative data generated by real-time PCR indicated an enrichment of bacteria and methanogens once the steady state was reached. The analysis allowed evaluation of the microbial components more susceptible to the shift from aerobic to anaerobic conditions and estimation of the microbial components growing or declining in the system. Additionally, activated sludge was investigated to evaluate the microbial core selected by the WWTP operative conditions.

Enrichment of thermophilic methanogenic microflora from mesophilic waste activated sludge for anaerobic digestion of garbage slurry

This study investigated a startup strategy for thermophilic methanogenic enrichment. Conventional waste activated sludge (WAS) was used as the seed. The WAS seed was incubated at 55 °C in a continuous-flow stirred tank reactor, with garbage slurry fed continuously as a substrate. One of the two reactors (termed reactor-high, RH) was fed with a high concentration of substrate (30 g-COD/L), while the other (reactor-low, RL) received a lower concentration of feed (15 g-COD/L). The specific organic loading rate was 0.2 g-COD/L/day initially, which was gradually increased by shortening the hydraulic retention time. The final OLR was 3.2 g-COD/L/day, after more than 90% of the initial WAS got washed out from the reactor and thermophilic microorganisms became dominant in the reactors. Biogas production rate and methane conversion ratio depended on substrate concentration, although total chemical oxygen demand removal and methane content were almost the same in RH and RL. Biogas production rate in RH was 3.2 times higher than that in RL, while the conversion ratio of RH was 1.6 times higher than that of RL. Quantitative polymerase chain reaction analysis using specific primers for the mcrA gene and high-throughput sequencing analysis of 16S rRNA gene amplicons demonstrated post enrichment differences in the microbial community, relative to that in the WAS. There was no significant difference in the enriched microbial community composition between RH and RL. In conclusion, thermophilic methanogenic microflora can be enriched from mesophilic seeds. Methanothermobacter, Methanosarcina, and other thermophilic bacteria were enriched in the community over time, with these thermophiles collectively accounting for ∼80% of the stable thermophilic community.

Attached-growth configuration outperforms continuously stirred tank anaerobic membrane bioreactors in alleviating membrane biofouling

Biofouling impedes the performance of anaerobic membrane bioreactors (AnMBR). Two reactors, one as an up-flow attachment-growth AnMBR (UA-AnMBR) configuration, and the other, as a continuously stirred AnMBR (CS-AnMBR) were evaluated for differences in membrane fouling rate. TMP increment in UA-AnMBR was slower than CS-AnMBR, although both reactors had similar COD removal efficiency (ca. > 96%). Slower fouling rate for UA-AnMBR was related to lower total and viable cells, and thereby microbial activity compared to that in CS-AnMBR. Acinetobacter and Methanobacterium that played keystone roles in anaerobic biofilm formation were not consistently prevalent on the membranes connected to UA-AnMBR. This is in contrast to both Acinetobacter and Methanobacterium consistently prevalent on the membranes connected to CS-AnMBR. The findings suggest that UA-AnMBR can alleviate membrane biofouling through changes in microbial activity and profile dynamics, and would be a suitable reactor configuration to adopt to achieve an efficient AnMBR for municipal wastewater treatment.

Accelerated start-up for photo-fermentative hydrogen production in biofilm reactor by adding waste effluent

The difficulty and long duration of start-up wastes numerous costs, labors and time and a little fluctuate during the process might fail it. However, studies dealing with the problem hindering accelerated start-up are still insufficient. Current research focused to develop a method for accelerated start-up in an efficient way. This work outlined a novel alternative for accelerated start-up. This joint method, adding waste effluent with applying biofilm reactor, could successfully start up hydrogen production in the first 24 h via increasing ability of hydrogen producers while the control group produced little hydrogen. The two factors, biofilm formation and addition of waste effluent, expressed the combined effects on accelerated start-up. This study suggested that little molecules like quorum sensing system factors and indoles might be the crucial regulating and stimulating factors and express the accelerated start-up ability only in biofilm reactors.

Anaerobic degradation of digestate based hydrothermal carbonization products in a continuous hybrid fixed bed anaerobic filter

This study investigates the suitability of continuous hybrid fixed bed anaerobic filter reactor for treating sewage and agro-industrial digestate hydrothermal carbonization (HTC) products; hydrochar and HTC liquor (HTCL). The reactor was operated for 300 days under mesophilic conditions at different organic loading rates (OLR); maximum OLRs of 7.4 and 10 gCOD/L/d were reached while treating HTC liquor and slurry, respectively. 15 g/L hydrochar were added to the reactor as a supplement while treating HTCL solely thus increasing the biogas production up to 153%. The reactor was fed with HTCL and hydrochar with an increasing mixing ratio, and the co-digestion impact was dependent on hydrochar concentrations. The results of the study indicate that the hybrid fixed bed anaerobic filter reactor is a promising anaerobic digestion configuration for treating HTCL and overcoming the HTC upscaling challenges, and the suitability of digestate hydrochar utilization as supplement material for anaerobic digestion.

Novel tapered variable diameter biological fluidized bed for treating pesticide wastewater with high nitrogen removal efficiency and a small footprint

In this study, the removal efficiency of nitrogen, specific nitrification rate (SNR), specific denitrification rate (SDNR) and compliance rate of the novel tapered variable diameter biological fluidized bed (TVDBFB) and anoxic/oxic (AO) process were compared at different temperatures. The results showed that the optimal TN, NH₄⁺-N, and TKN removal efficiencies of the TVDBFB were 76%, 89% and 88%, respectively, and those of AO were 65%, 67% and 69%, respectively. The SNR and SDNR of the TVDBFB were significantly higher than those of AO. The TVDBFB had a smaller footprint than AO. The alkalinity/NH₄⁺-N, BOD₅/TN and temperature play important roles in the compliance rate. Increasing the carrier packing rate has emerged as a new strategy for enhancing the compliance rate. Mathematical models were developed and determined to be well-fitted with the experimental values, which can be employed to predict the SNR and SDNR of the TVDBFB.

The influence of combined low-strength ultrasonics and micro-aerobic pretreatment process on methane generation and sludge digestion: Lipase enzyme, microbial activation, and energy yield

Low-frequency ultrasonics is a potential technology to reduce the hydrolysis phase period in anaerobic digestion process. In this study, theinfluence of combined low frequency ultrasonics and micro-aerobic (MA) pretreatment on sewage sludge solubilization, enzyme activity and anaerobic digestion were assessed. Initially, the effect of ultrasonic density (0.012, 0.014, 0.016, 0.018, 0.1, 0.12 and 0.14 W/mL) and irradiation time (1, 3, 5, 8, 9, 10 and 12 min) of 20 kHz frequency waves were investigated. Accordingly, the effect of micro-aerobic pretreatment (Air flow rate (AFR) = 0.1, 0.2, 0.3 and 0.5 VVM) within 20, 30, 40.48 and 60 h were examined. In addition, the effect of combined pretreatment on COD solubilization, lipase enzyme activation, ATP, percentage of live bacteria and methane gas production during the anaerobic process were examined. The results showed that the highest lipase activity (14.9 Umol/mL) was obtained under the effect of ultrasonic density of 0.1 W/ml within 9 min. The highest solubilization (65%) was observed under optimal micro-aerobic conditions: AFR = 0.2 (VVM) and micro-aerobic time: 40 h. Combined ultrasonic and micro-aerobic (US + MA) pretreatment increases the solubilization (70%), microbial activity (2080%) and lipase enzymatic activity (129%) compared to individual pretreatment. The Biogas production during anaerobic digestion pretreated with combined methods increased by 193% compared to the control, while the elevated values of biogas production in reactors pretreated by ultrasonic and micro-aerobic pretreatment alone were observed to be 101% and 165%, respectively. The net energy in reactor with the combined pre-treatment methods was calculated to be 1.26 kWh, while this value for control, pretreated ultrasonic and micro-aerobic reactors were obtained to be 0.56, 0.67 and 1.2 kWh, respectively.

Effect of nickel on the comparative performance of inverse fluidized bed and continuously stirred tank reactors for biogenic sulphur-driven autotrophic denitrification

The comparative performance of an inverse fluidized bed reactor (IFBR) having high density polyethylene beads as carrier materials for biofilm formation and a continuous stirred tank reactor (CSTR), both maintaining autotrophic denitrification using biogenic sulphur (ADBIOS) in the absence and presence of nickel (Ni²⁺), was studied. The reactors were compared in terms of NO₃^--N and NO₂^--N removal and SO₄^2--S production throughout the study. A simulated wastewater with an inlet NO₃^--N concentration of 225 mg/L and a decreasing concentration of biogenic sulphur (bio-S) from 1.5 to 0.375 g/L was used. Both reactors were operated at a hydraulic retention time (HRT) of 48 h for 140 days and at an HRT of 42 h for the following 68 days. A more efficient ADBIOS was observed in the CSTR than IFBR throughout the study due to a better mixing of the feed wastewater in the bulk liquid and a higher availability of bio-S to the suspended cells. The NO₃^--N removal efficiency in the IFBR decreased by approximately 41% when the feed bio-S was reduced to 0.375 g/L, while it remained unaffected in the CSTR. Conversely, the presence of Ni²⁺ did not significantly affect NO₃^--N removal in both reactors even at a feed Ni²⁺ concentration of 120 mg/L. The highest NO₃^--N removal rates achieved were 86 and 108 mg NO₃^--N/(L·day) in the IFBR and CSTR, respectively, in the presence of 120 mg/L of feed Ni²⁺ at an HRT of 42 h. Batch studies conducted with acclimatized biomass showed that the continuous-flow operation mode in both reactors played a major role in helping the autotrophic denitrifiers to tolerate Ni²⁺ toxicity.

Effects of amino-modified biofilm carriers on biogas production in the anaerobic digestion of corn straw

This paper studied the property of three different biofilm carriers added into the anaerobic digestion systems, a granular activated carbon, a polyacrylonitrile, and a polyacrylonitrile modified with diethylenetriamine (PAN-NH₂). The PAN-NH₂ system kept the maximum biogas and methane production, which were 42.69% and 37.29% higher than the control system, respectively. The value of pH and chemical oxygen demand, the content of total solid and volatile solid, volatile fatty acids concentration, coenzyme F₄₂₀ concentration, and microbial community analysis were investigated during the anaerobic digestion process. The PAN-NH₂ system had the highest removal efficiency of the pollutants and regulated the pH of the system better than other systems. The result of high-throughput sequencing analysis showed that the addition of biofilm carriers and mediation with amino-groups adjusted system pH and improved biogas and CH₄ production by reducing the relative abundance of bacteria in the hydrolysis/acidogenesis stages. Methanosarcina gradually replaced other methanogens during the experimental runs and was the dominant methanogen at the end of the anaerobic digestion process.

Optimizing nutrient removal of moving bed biofilm reactor process using response surface methodology

The potential of 3-stages process (anaerobic, anoxic and moving bed biofilm reactor (MBBR)) for organic matter and nutrient removals from secondary WWTP effluents at various hydraulic retention time (HRT) and nitrate recycle ratio (R) was investigated. Percentage removals of total nitrogen (%TNremoval) and phosphorous (%TPremoval) were optimized using response surface methodology (RSM). Under optimized conditions (HRTtotal = 12.8 hr and R = 1.5) significant chemical oxygen demand removal (%CODremoval), %TNremoval and %TPremoval of 95.5%, 96.2%, 94.70% were attained. The MMBR effectively reduced organic matter and nutrient under low HRT and R. %TNremoval was improved by increasing the HRTR2 up to 1.5 h at R ≤ 2. Bio-uptake of phosphorus and nitrate is controlled by release of secondary phosphorous. Reactors demonstrated stable biofilm characteristics except for a slight decrease in biofilm thickness due to flow-shear stress. The 3-stages process performed four times higher than suspended growth process and similar to 5-stage Bardenpho-MBBR.

Bioaugmentation treatment of nitrogen-rich wastewater with a denitrifier with biofilm-formation and nitrogen-removal capacities in a sequencing batch biofilm reactor

A strain with efficient biofilm-formation and aerobic denitrification capabilities was isolated and identified as Pseudomonas mendocina IHB602. In pure culture, strain IHB602 removed almost all NO₃^--N, NO₂^--N, and NH₄⁺-N (initial concentrations 50 mg/L) within 24 h. The strain produced large amounts of extracellular polymeric substances (maximum 430.33 mg/g cell dry weight) rich in protein but containing almost no humic acid. This, and strong autoaggregation (maximum 47.09%) and hydrophobicity (maximum 85.07%), imparted strain IHB602 with biofilm forming traits. A sequencing batch biofilm reactor bioaugmented with strain IHB602 (SBBR1) had more rapid biofilm-formation than the control without strain IHB602 inoculation (SBBR2). During the stabilization period, the effluent removal ratios for NH₄⁺-N (95%), NO₃^--N (91%) and TN (88%) in SBBR1 were significantly higher than those in SBBR2 (NH₄⁺-N: 91%, NO₃^--N: 88%, TN: 82%). Microbial community structure analysis revealed that strain IHB602 successfully proliferated and contributed to nitrogen removal as well as biofilm formation.

Bacterial quorum sensing in complex and dynamically changing environments

Quorum sensing is a process of bacterial cell-to-cell chemical communication that relies on the production, detection and response to extracellular signalling molecules called autoinducers. Quorum sensing allows groups of bacteria to synchronously alter behaviour in response to changes in the population density and species composition of the vicinal community. Quorum-sensing-mediated communication is now understood to be the norm in the bacterial world. Elegant research has defined quorum-sensing components and their interactions, for the most part, under ideal and highly controlled conditions. Indeed, these seminal studies laid the foundations for the field. In this Review, we highlight new findings concerning how bacteria deploy quorum sensing in realistic scenarios that mimic nature. We focus on how quorums are detected and how quorum sensing controls group behaviours in complex and dynamically changing environments such as multi-species bacterial communities, in the presence of flow, in 3D non-uniform biofilms and in hosts during infection.

Treatment of heavily polluted river water by tidal-operated biofilters with organic/inorganic media: Evaluation of performance and bacterial community

In this study, biofilters (BFs) packed with inorganic (ceramsite and lava rock) and organic (fibrous carrier and biological ball) materials were applied in a tide-flow mode at three flooded/drained (F/D) time ratios (16/8 h, 12/12 h and 8/16 h) to treat heavily polluted river water. The results showed that higher ammonium and phosphorus removals were achieved with BFs filled with ceramsite (95-97% and 76-77%) and lava rock (87-92% and 84-94%), while fibrous carrier-packed BFs obtained better total nitrogen removal (37-44%). Moreover, the F/D time ratio of 16/8 h was slightly preferable for pollutant removal. High-throughput sequencing analysis illustrated that the relative abundance of potential denitrifiers that developed on organic media was much higher than those on inorganic substrates. The results indicated that the combination of inorganic materials and fibrous carriers as substrates could be an effective strategy for enhancing overall pollutant removal in BFs.

Full-scale agricultural biogas plant metal content and process parameters in relation to bacterial and archaeal microbial communities over 2.5 year span

A start-up of 4 MW agricultural biogas plant in Vučja vas, Slovenia, was monitored from 2011 to 2014. The start-up was carried out in 3 weeks with the intake of biomass from three operating full-scale 1-2 MW donor agricultural biogas plants. The samples were taken from donor digesters and from two serial digesters during the start-up over the course of 2.5 years. Bacterial and Archaeal microbial communities progressively diverged from the composition of donor digesters during the start-up phase. The rate of change of Bacterial community decreased exponentially over the first 2.5 years as dynamics within the first 70 days was comparable to that of the next 1.5 years, whereas approximately constant rate was observed for Archaea. Despite rearrangements, the microbial communities remained functionally stable and produced biogas throughout the whole 2.5 years of observation. All systems parameters measured were ordered according to their Kernel density (Gaussian function) ranging from the most dispersed (substrate categories used as cosubstrates, quantities of each cosubstrate, substate dry and volatile matter, process parameters) towards progressively least dispersed (trace metal and ion profiles, aromatic-polyphenolic compounds, biogas plant functional output (energy)). No deficiency was detected in trace metal content as the distribution of metals and elements fluctuated within the suggested limits for biogas over 2.5 year observation. In contrast to the recorded process variables, Bacterial and Archaeal microbial communities exhibited directed changes oriented in time. Variation partitioning showed that a large fraction of variability in the Bacterial and Archaeal microbial communities (55% and 61%, respectively) remained unexplained despite numerous measured variables (n = 44) and stable biogas production. Our results show that the observed reorganization of microbial communities was not directly associated with impact on the full-scale biogas reactor performance. Novel parameters need to be determined to elucidate the variables directly associated with the reorganization of microbial communities and those relevant for sustained function such as the more in-depth interaction between TSOC, trace metal profiles, aromatic-polyphenolic compounds and ionic strength (e.g. electrical conductivity).

Stoichiometric variation and loading capacity of a high-loading anammox attached film expanded bed (AAEEB) reactor

The nitrogen loading rate (NLR) of an anammox attached film expanded bed (AAFEB) reactor was increased from 5.0 to 60.0 gN/L/d. During the stable operational period, the TN removal efficiency maintained at 87.3 ± 2.5%, and a maximum nitrogen removal rate (NRR) of 44.9 ± 0.3 gN/L/d was achieved. Overload resulted in the sharp deterioration of reactor performance, the ratio of (Food/Microorganism)/SAA should be maintained at lower than 66 ± 7% to ensure the stable operation of the AAFEB reactor. New stoichiometric equations for the anammox process under the low NLR condition (5.0 gN/L/d) and the high NLR condition (50.0 gN/L/d) were proposed. The quantitative SAA-cytochrome heme C relationship was established for the first time that providing a simple way for monitoring the reactor performance. Substrate tolerance ability was significantly increased that proving the stability of the AAFEB reactor was continuously enhanced during the stable operational periods.

Effects of different biofilm carriers on biogas production during anaerobic digestion of corn straw

This study investigated the performance of anaerobic digestion systems using four types of fibrous biofilm carriers, a polypropylene, a polyester, a polyamide, and a polyurethane fiber material. The biogas and methane production, pH, chemical oxygen demand, total solids content, volatile solids content, residual coenzyme F₄₂₀, and microbial community compositions were determined during the experimental runs. Furthermore, scanning electron microscopy was employed to identify the microbial consortium and examine their attachment onto the surface of the four fibrous biofilm carriers. The polypropylene fiber system maintained the highest biogas and methane production in the reactor, which was 44.80% and 49.84% higher than that noted in the control, respectively, during the entire anaerobic fermentation cycle. Meanwhile, the polypropylene fiber system exhibited the highest TS, VS, and COD removal efficiency. The results of high-throughput sequencing indicated that the dominant species in the polypropylene fiber system were Methanoregula and Methanobacterium.

Biogas

Biogas production represents a fascinating process for the recovery of nutrients and renewable energy from various organic waste streams. The process is of interest for the production of value-added chemicals by mixed cultures and can also be applied in combined bioenergy production systems. Strategies and opportunities for optimization of biogas quality and quantity are presented.

Microbial communities in the functional areas of a biofilm reactor with anaerobic-aerobic process for oily wastewater treatment

Microbial communities in the functional areas of biofilm reactors with large height-diameter ratio using the anaerobic-aerobic (A/O) reflux process was investigated to treat heavy oil refinery wastewater without pretreatment. In the process, chemical oxygen demand (COD) and total nitrogen (TN) removal reached 93.2% and 82.8%, and the anaerobic biofilm reactor was responsible for 95% and 99%, respectively. Areas for hydrolysis acidification and acetic acid production, methane production, and COD recovery were obvious in the anaerobic reactor. Among all areas, area for hydrolysis acidification and acetic acid production was the key factor to improve COD removal efficiency. High throughput sequencing of 16S rDNA gene showed that the native community was mainly composed of functional groups for hydrocarbon degradation, syntrophic bacteria union body, methanogenesis, nitrification, denitrification, and sulfate reduction. The deviations between predicted values and actual COD and TN removal were less than 5% in the optimal prediction model.

Modeling the dynamic volatile fatty acids profiles with pH and hydraulic retention time in an anaerobic baffled reactor during the startup period

To predict the dynamic profiles in volatile fatty acids (VFAs) with pH and hydraulic retention time (HRT) during the startup of a 4-compartment ABR, a mathematical model was constructed by introducing pH and thermodynamic inhibition functions into the biochemical processes derived from the ADM1. The calibration of inhibition parameter for propionate uptake effectively improved the prediction accuracy of VFAs. The developed model could simulate the VFAs profiles very well no matter the observable change of pH or/and HRT. The simulation results indicated that both H₂-producing acetogenesis and methanogenesis in the ABR would be inhibited with a pH less than 4.61, and the propionate oxidation could be thermodynamically restricted even with a neutral pH. A decreased HRT would enhanced the acidogenesis and H₂-producing acetogenesis in the first 3 compartments, but no observable increase in effluent VFAs could be found due to the synchronously enhanced methanogenesis in the last compartment.

Start-up phase of an anaerobic full-scale farm reactor - Appearance of mesophilic anaerobic conditions and establishment of the methanogenic microbial community

The goal of this study was to investigate how the microbial community structure establishes during the start-up phase of a full-scale farm anaerobic reactor inoculated with stale and cold cattle slurry. The 16S/18S high-throughput amplicon sequencing results showed an increase of the bacterial, archaeal and eukaryotic diversity, evenness and richness during the settlement of the mesophilic anaerobic conditions. When a steady performing digestion process was reached, the microbial diversity, evenness and richness decreased, indicating the establishment of a few dominant microbial populations, best adapted to biogas production. Interestingly, among the environmental parameters, the temperature, alkalinity, free-NH3, total solids and O2 content were found to be the main drivers of microbial dynamics. Interactions between eukaryotes, characterized by a high number of unknown organisms, and the bacterial and archaeal communities were also evidenced, suggesting that eukaryotes might play important roles in the anaerobic digestion process.

Architectural transitions in Vibrio cholerae biofilms at single-cell resolution

Many bacterial species colonize surfaces and form dense 3D structures, known as biofilms, which are highly tolerant to antibiotics and constitute one of the major forms of bacterial biomass on Earth. Bacterial biofilms display remarkable changes during their development from initial attachment to maturity, yet the cellular architecture that gives rise to collective biofilm morphology during growth is largely unknown. Here, we use high-resolution optical microscopy to image all individual cells in Vibrio cholerae biofilms at different stages of development, including colonies that range in size from 2 to 4,500 cells. From these data, we extracted the precise 3D cellular arrangements, cell shapes, sizes, and global morphological features during biofilm growth on submerged glass substrates under flow. We discovered several critical transitions of the internal and external biofilm architectures that separate the major phases of V. cholerae biofilm growth. Optical imaging of biofilms with single-cell resolution provides a new window into biofilm formation that will prove invaluable to understanding the mechanics underlying biofilm development.

Evaluation of a hybrid anaerobic biofilm reactor treating winery effluents and using grape stalks as biofilm carrier

Wine production processes generate large amount of both winery wastewater and solid wastes. Furthermore, working periods, volumes and pollution loads greatly vary over the year. Therefore, it is recommended to develop a low-cost treatment technology for the treatment of winery effluents taking into account the variation of the organic loading rate (OLR). Accordingly, we have investigated the sequential operation of an anaerobic biofilm reactor treating winery effluents and using grape stalks (GSs) as biofilm carrier with an OLR ranging from 0.65 to 27 gCOD/L/d. The result showed that, during the start-up with wastewater influent, the chemical oxygen demand (COD) removal rate ranged from 83% to 93% and was about 91% at the end of the start-up period that lasted for 40 days. After 3 months of inactivity period of the reactor (no influent feeding), we have succeeded in restarting-up the reactor in only 15 days with a COD removal of 82% and a low concentration of volatile fatty acids (1 g/L), which confirms the robustness of the reactor. As a consequence, GSs can be used as an efficient carrier support, allowing a fast reactor start-up, while the biofilm conserves its activity during a non-feeding period. The proposed hybrid reactor thus permits to treat both winery effluents and GSs.

Microbial community dynamics in an anaerobic biofilm reactor treating heavy oil refinery wastewater

We have established an anaerobic biofilm reactor (AnBR) for treating heavy oil refinery wastewater at the field scale for the first time.

Electrical conductivity as a state indicator for the start-up period of anaerobic fixed-bed reactors

The aim of this work was to analyse the applicability of electrical conductivity sensors for on-line monitoring the start-up period of an anaerobic fixed-bed reactor. The evolution of bicarbonate concentration and methane production rate was analysed. Strong linear relationships between electrical conductivity and both bicarbonate concentration and methane production rate were observed. On-line estimations of the studied parameters were carried out in a new start-up period by applying simple linear regression models, which resulted in a good concordance between both observed and predicted values. Electrical conductivity sensors were therefore identified as an interesting method for monitoring the start-up period of anaerobic fixed-bed reactors due to its reliability, robustness, easy operation, low cost, and minimum maintenance compared with the currently used sensors.

Effect of fillers on key characteristics of sludge thermophilic anaerobic digestion

In anaerobic digestion (AD) of sludge, AD efficiency and digested sludge (DS) dewaterability are critical factors. In this study, polyester non-woven fabric fillers were integrated into a sludge digester. The effect of such fillers on digestion was investigated in thermophilic temperature range in semi-continuous mode. Methane production of filler system and control reactor were significantly different (P < 0.05, paired t-test). At hydraulic retention times of 18 days and 12 days, the corresponding methane yields from filler system were 140% and 161%, respectively, of the yields from control digester without filler. Improvement of DS dewaterability was uncertain during 110 days of operation. While after a longer period of digestion, filler system resulted in a lower normalized capillary suction time of DS (76.5 ± 21.6 s L/g total suspended solids) than control reactor (118.7 ± 32.9 s L/g total suspended solids). The results showed that the filler could improve thermophilic AD performance, except at too short hydraulic retention times.

Sequential operation of a hybrid anaerobic reactor using a lignocellulosic biomass as biofilm support

Agro-industries are facing many economic and environmental problems associated with seasonal generation of liquid and solid waste. In order to reduce treatment costs and to cope with seasonal variation, we have developed a hybrid anaerobic reactor operated sequentially by using lignocellulosic biomass (LB) as biofilm carrier support. Six LBs were tested to evaluate the treatment performance during a succession of two start-up periods, separated by a non-feeding period. After a short acclimation phase of several days, all the reactors succeeded in starting-up in less than 1month to reach an organic loading rate of 25gCODL(-1)d(-1). In addition, they restarted-up successfully in only 15days after a 3month non-feeding period, indicating that biofilms conserved their biological activities during this last phase. As a consequence, the use of LB as a biofilm support gives the potential to sustain seasonal variations of wastewater loads for industrial application.

Anaerobic treatment of tequila vinasses under seasonal operating conditions: start-up, normal operation and restart-up after a long stop and starvation period

This study examines the performance of an anaerobic fixed-film bioreactor under seasonal operating conditions prevailing in medium and small size Tequila factories: start-up, normal operation and particularly, during the restart-up after a long stop and starvation period. The proposed start-up procedure attained a stable biofilm in a rather short period (28 days) despite unbalanced COD/N/P ratio and the use of non-acclimated inoculum. The bioreactor was restarted-up after being shut down for 6 months during which the inoculum starved. Even when biofilm detachment and bioreactor clogging were detected at the very beginning of restart-up, results show that the bioreactor performed better as higher COD removal and methane yield were attained. CE-SSCP and Q-PCR analyses, conducted on the biofilm prokaryotic communities for each operating condition, confirmed that the high COD removal results after the bioreactor clogging and the severe starvation period were mainly due to the stable archaeal and resilient bacterial populations.

Biofilm development during the start-up period of anaerobic biofilm reactors: the biofilm Archaea community is highly dependent on the support material

To evaluate the impact of the nature of the support material on its colonization by a methanogenic consortium, four substrata made of different materials: polyvinyl chloride, 2 polyethylene and polypropylene were tested during the start-up of lab-scale fixed-film reactors. The reactor performances were evaluated and compared together with the analysis of the biofilms. Biofilm growth was quantified and the structure of bacterial and archaeal communities were characterized by molecular fingerprinting profiles (capillary electrophoresis-single strand conformation polymorphism). The composition of the inoculum was shown to have a major impact on the bacterial composition of the biofilm, whatever the nature of the support material or the organic loading rate applied to the reactors during the start-up period. In contrast, the biofilm archaeal populations were independent of the inoculum used but highly dependent on the support material. Supports favouring Archaea colonization, the limiting factor in the overall process, should be preferred.