Interactions between suspended sediments and submerged macrophytes-epiphytic biofilms under water flow in shallow lakes

Sediment-based biochar enhances growth, physiological and phytochemical properties of submerged plant Vallisneria spiralis via improving rhizosphere micro-ecological environment

In-situ remediation of eutrophic waters using submerged plants is a widely applied strategy. However, harsh sediment conditions impair the physiological and phytochemical functions of submerged plants, which diminishes their water purification capabilities. Herein, sediment-based biochar (SBC) was introduced to enhance the growth, physiological and phytochemical properties of submerged plant Vallisneria spiralis (V. spiralis) by ameliorating the sedimentary environment. The results indicated that SBC effectively promoted the development of V. spiralis, with the maximum number of leaves, biomass, root length, chlorophyll content, and root vitality in SBC-added groups being 1.8-, 1.5-, 1.8-, 1.5-, and 1.3-fold higher than the Z0 group without SBC. Additionally, the subordinate function method revealed a superior overall growth status of submerged plants in SBC-added groups, with a maximum value of 0.488 compared to 0.388 in the Z0 group. Further studies demonstrated that SBC provided a loose and porous matrix containing main and trace elements for V. spiralis. Moreover, SBC availably improved the abundance and diversity of rhizosphere microorganisms by increasing the relative abundance of Firmicutes, Proteobacteria, Bacteroidetes, and Chloroflexi (6 %-41 %). To sum up, this work offers a feasible way for in-situ sediment resource utilization and promoting submerged plant growth by applying SBC to facilitate aquatic ecosystem health.

Unravelling of the interaction mechanism of PFOA with submerged macrophytes and epiphytic biofilms at gene and molecular level

Perfluorooctanoic acid (PFOA) is a global concern for the remediation of aquatic environments due to its toxicity, persistence and bioaccumulation. To gain a comprehensive understanding of the effects of PFOA on submerged macrophytes and epiphytic biofilms in eutrophic waters, as well as the mechanisms of PFOA and nutrient removal by submerged macrophyte-biofilm system, plant-attached biofilms were cultured under PFOA stress. Results indicated that PFOA exposure leads to an increase in ROS in plants, seriously damaging cellular systems, activating enzyme antioxidants to protect plant cells from oxidative damage. Additionally, PFOA affects microbial diversity, structure and function in biofilms, with Cyanobacteria and Proteobacteria being the dominant groups. While impacting both plants and biofilms, PFOA will be absorbed by them. PFOA binds to channel proteins (ULX0, VIH9) on plant cells and enters the plant, thus removing it from the environment. Plant co-cultivation has the highest pollutant removal rate of PFOA, reaching to 33.00 %. Furthermore, metagenomics analyses revealed that alterations in genes associated with N (nxrB, nxrA) and P (phoR, pstA) cycling of in the biofilm microorganisms facilitated the removal of N and P, with removal rates of 98.00 % and 99.42 %, respectively. These findings contribute to the ecological assessment of PFOA and provide valuable sights into the mechanisms of PFOA, N and P removal in eutrophic lakes by plants and epiphytic biofilms.

Deciphering membrane biofouling induced by micro-/nano-plastics in nanofiltration: Metagenomic insights and spacer-driven mitigations

Nanofiltration (NF) is an effective process for micro-/nano-plastics (MNPs) interception, but the impact of accumulated MNPs on the microbial community structure and metabolic pathways of biofilms on NF membranes remains unclear. This provides uncertainty with respect to membrane biofouling behavior and the risks to efficient NF operations. In this study, the size-dependent (20 nm-25 μm) and concentration-dependent (0.1-50 mg·L-1) effects of MNPs on the biofouling of a NF membrane treating secondary wastewater effluent were studied. Three MNPs-tolerant, hypermetabolic and polystyrene-degradable genera (i.e., Acinetobacter, Novosphingobium and Asticcacaulis) were detected in biofilms as dominant taxonomic compositions. MNPs led to an increase of 19.3 %-76.7 % in biomass contents and a more rapid decrease in permeate flux, with 0.1 mg·L-1 of 80 nm NPs causing the most severe membrane biofouling. Metagenomic analysis revealed that MNPs upregulated enzymes involved in exopolysaccharide (ExoA/L/M/P/Q/X/Y/Z) and tyrosine (COMT, FeaB and AOC3) biosynthesis and quorum sensing (PhzF and CiaH/R), and suppressed cell motility pathways including flagellar assembly and bacterial chemotaxis. Novel types of perforated column spacer (PCS) enhanced the hydrodynamics of the membrane feed with a lower pressure drop and higher fluid velocity, introduced micro-jets and greater mass transfer inside feed channels, thus eliminating the deposition of MNPs and mitigating membrane biofouling. Overall, a greater understanding of the interaction mechanisms between MNPs and membrane biofouling in secondary effluent filtration will help develop more effective MNPs management strategies and achieve more sustainable NF operations.

Compositions of suspended particulates in typical urban river of Shanghai, China and its significance for ecological restoration

Although the water quality of urban rivers in Shanghai, China has been improved significantly in the past decades, their transparency is still unsatisfactory. To clarify the turbidity and its possible mechanisms, the characteristics of suspended particulate matters (SPM) are analyzed carefully, which reveals that suspended microbes dominate the component in urban rivers with high turbidity. Based on the principal component analysis and random forest analysis, nutrients and organic pollutants is revealed to promote the turbidity by promoting the growth of suspended algae and microbes. Furthermore, high-throughput sequencing is used to analyze the microbes in bulk water of urban rivers and iris rhizosphere of ecological floating bed. It reveals that there are significant differences between the microbial communities in bulk water and iris rhizosphere, suggesting that microbes immobilized in iris roots are not derived from bulk water. The metabolic function enrichment analysis based on PICRUSt shows that rhizosphere microbes mainly concentrate on the metabolism of plant secretions, while suspended microbes in bulk water mainly concentrate on the metabolism of pollutants. Since microbial diversity, metabolic richness, and interactions of rhizosphere microbes are much higher than those microbes in bulk water, it suggests that rhizosphere microbes may reduce suspended microbes in water via their competitive effects, thus purify pollutants and reduce turbidity in bulk water (improve transparency). These findings reveal the theoretical basis of water ecological restoration, thus might be helpful to technological innovation in the ecological restoration of urban rivers with high turbidity.

Manganese-modified reed biochar decreased nutrients and methane release from algae debris-contaminated sediments

Biochar is one of the ways for carbon storage, pollution control and biosolid reuse. Aquatic plant reeds are widely used in nutrient removal in wetlands and have huge biomass. Nonetheless, little is known regarding the effects of reed-based biochar on sediments. In this study, reed-based biochar (BC) modified with or without Mn-oxidizers (MBC) was prepared to investigate their impacts on nutrient removal, methane (CH4) emission fluxes, and CH4 concentration and microbial community in sediments for 20 days. We found that BC and MBC significantly reduced CH4 emission fluxes by 56.84 ± 10.47% and 69.95 ± 0.76% (p < 0.05) compared to control (CK), respectively. In addition, BC and MBC had a higher efficiency of nutrient removal, and the removal rate increased by 4.4% for NH4+-N and 10.13% for TN in BC and by 3.21%, 8.43% and 18.29% for NH4+-N, TN and TP in MBC, respectively. Proteobacteria, Chloroflexi, Bacteroidota, Firmicutes, Desulfobacterota and Acidobacteriota were the predominant phyla in sediments and might contribute to nutrient removal. Network analysis revealed that biochar addition promoted interspecific competition in sediments, which could be more beneficial for enhancing the stability of microbial community structures. The decreased mcrA (CH4 bioproduction) abundance but increased pomA (CH4 oxidation) abundance was detected in BC and MBC compared to CK, explaining biochar-reduced CH4 emissions. This study highlights that reed straw-based biochar can be used in the in-situ remediation of polluted sediments and provides a choice for carbon storage and pollution control for managers.

Response of Ceratophyllum demersum L. and its epiphytic biofilms to 6PPD and 6PPD-Q exposure: Based on metabolomics and microbial community analysis

The emerging contaminant N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine (6PPD) and its ozone conversion product N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine quinone (6PPD-Q) pose a threat to aquatic ecosystems. Aquatic animals and plants exhibit vigorous responses at very low ambient concentrations. However, studies of submerged macrophytes, key producers in aquatic ecosystems, are limited and the full extent of their toxic effects and feedback mechanisms is unknown. To investigate the phytotoxicity of 6PPD and 6PPD-Q, we modeled plant responses to abiotic stress using Ceratophyllum demersum L. (C. demersum) as a representative submerged plant. Our findings indicate that 6PPD and 6PPD-Q disrupt physiological and biochemical processes in C. demersum, encompassing growth inhibition, reduction in photosynthetic pigments, induction of oxidative damage, and metabolic alterations. Moreover, unfavorable modifications to biofilms induced were also discernible supported by confocal laser scanning microscopy (CLSM) images and microbial community profiling. More importantly, we found a robust correlation between differentially expressed metabolites (DEMs) and dominant genera, and 6PPD and 6PPD-Q significantly altered their correlation. Overall, our results imply that even though C. demersum is a resilient submerged macrophyte, the toxic effects of 6PPD and 6PPD-Q cannot be disregarded.

Coupled effects of redox-active substances and microbial communities on reactive oxygen species in rhizosphere sediments of submerged macrophytes

Reactive oxygen species (ROS) play crucial roles in element cycling and pollutant dynamics, but their variations and mechanisms in the rhizosphere of submerged macrophytes are poorly investigated. This study investigated the light-dark cycle fluctuations and periodic variations in ROS, redox-active substances, and microbial communities in the rhizosphere of Vallisneria natans. The results showed sustained production and significant diurnal fluctuations in the O2•- and •OH from 27.6 ± 3.7 to 61.7 ± 3.0 μmol/kg FW and 131.0 ± 6.8 to 195.4 ± 8.7 μmol/kg FW, respectively, which simultaneously fluctuated with the redox-active substances. The ROS contents in the rhizosphere were higher than those observed in non-rhizosphere sediments over the V. natans growth period, exhibiting increasing-decreasing trends. According to the redundancy analysis results, water-soluble phenols, fungi, and bacteria were the main factors influencing ROS production in the rhizosphere, showing contribution rates of 74.0, 17.3, and 4.4 %, respectively. The results of partial least squares path modeling highlighted the coupled effects of redox-active substances and microbial metabolism. Our findings also demonstrated the degradation effect of ROS in rhizosphere sediments of submerged macrophytes. This study provides experimental evidence of ROS-related rhizosphere effects and further insights into submerged macrophytes-based ecological restoration.

Glufosinate-ammonium increased nitrogen and phosphorus content in water and shaped microbial community in epiphytic biofilm of Hydrilla verticillata

Glufosinate-ammonium (GLAM) can be released into adjacent water bodies with rainfall runoff and return water from farmland irrigation. However, impacts of GLAM on aquatic organisms remain unclear. In this study, changes in water quality, plant physiological parameters and epiphytic microbial community were investigated in wetlands with Hydrilla verticillata exposed to GLAM for 24 days. We found GLAM addition damaged cell and reduced chlorophyll a content in Hydrilla verticillata leaves, and increased ammonium and phosphorus in water (p < 0.001). The α-diversity increased in bacterial community but decreased in eukaryotic community with GLAM exposure. Neutral community models explained 62.3 % and 55.0 % of the variance in bacterial and eukaryotic communities, respectively. Many GLAM micro-biomarkers were obtained, including some clades from Proteobacteria, Bacteroidete, Actinobacteriota, Phragmoplastophyta, Annelida and Arthropoda. Redundancy analysis revealed that GLAM concentration was positively correlated to Flavobacterium, Gomphonema and Closterium but negatively to Methyloglobulus and Methylocystis. Network analysis revealed that 15 mg/L GLAM disturbed the interactions among phytoplankton, protozoa, metazoan and bacteria and reduced the stability of the microbial communities compared to 8 mg/L GLAM. GLAM shaped the nitrogen and phosphorus cycle related bacterial genes. This study highlights that herbicides are non-neglectable factors affecting the efficiency of aquatic ecological restoration in agricultural areas to control agricultural non-point source pollution.

Role of biogeochemical and hydrodynamic characteristics in simulating nitrogen dynamics in river confluence

The confluence area is the link of different river systems, whose specific hydrodynamic characteristics can significantly influence mass transport and distribution, which can further make a difference to microorganism growth and biogeochemical processes. However, the specific influences of hydrodynamic characteristics in confluence on formation processes of microbial communities and the biogeochemical processes remain unclear. To this end, the present study established an indoor self-circulation confluence flume and conducted 28-day culture experiment to thoroughly investigate the characteristics of microbial communities and nitrogen dynamics in sediment of confluence area. Results illustrated that the initial homogenous microbial communities gradually emerged differences among varied hydrodynamic zones with experiment going on. Concentrations of nitrogenous materials also changed at different experiment period, NO3- concentrations peaked at day 14, and then exhibited significant downtrend. The mean NO3- concentrations decreased the most in flow separation zone, with a 62 % decrease from day 14 to day 28. A numerical model was further established following the thermodynamics of enzyme catalysis reactions to simulate nitrogen transformation rates based on abundances of associated functional genes (gene-centric model). The average relative deviation between simulated and measured N2 production rates was 32 %. To further investigate the influence of hydrodynamic characteristics on nitrogen dynamics, DamKöhler numbers were calculated as the ratio of characteristic residence time to reaction time. DamKöhler numbers were better fitted with measured N2 production rates than simulated results of gene-centric model, signifying the importance of hydrodynamic characteristics in simulating nitrogen dynamics in confluence area.

Evolution and distribution of antibiotic resistance genes in submerged macrophytes and biofilm systems: From seasonal monitoring to mesocosm experiments

The aquatic ecosystem has been extensively investigated as a hotspot for the spread of antibiotic resistance genes (ARGs); yet, the evolution and distribution of ARGs profiles in submerged macrophytes biofilms and surrounding water remained unclear. In this study, the dynamic distribution and seasonal variations of microbial communities and ARGs profiles were investigated, alongside their assembly processes and mutual interactions. Bacitracin and multidrug resistance genes were predominant, constituting more than 60% of the total ARGs abundance. The deterministic processes (<65%), influenced by the physicochemical properties of the river environment, governed the assembly and composition of ARGs profiles, exhibiting significant seasonal variation. The peak diversity (21 types) and abundance (0.316 copy ratios) of ARGs were detected during the summer. Proteobacteria and Actinobacteria were the dominant bacterial phyla, accounting for 38.41-85.50% and 4.03-27.09% of the microbial community, respectively. Furthermore, Proteobacteria, especially genera such as Acinetobacter, Burkholderia, and Pseudomonas, with various resistance sequences, were the primary carriers of multiple ARGs. Notably, the genetic exchanges between biofilms and surrounding water facilitated the further propagation of high-risk ARGs, posing greater ecological risks. Redundancy analysis indicated that the total nitrogen and temperature in water determined the fate of pathogenic-resistant species. These findings provided theoretical support for the mitigation of ARGs contamination in aquatic environments.

Submerged macrophyte promoted nitrogen removal function of biofilms in constructed wetland

Biofilm is one of the important factors affecting nitrogen removal in constructed wetlands (CWs). However, the impact of submerged macrophyte on nitrogen conversion of biofilms on leaf of submerged macrophyte and matrix remains poorly understood. In this study, the CWs with Vallisneria natans and with artificial plant were established to investigate the effects of submerged macrophyte on nitrogen conversion and the composition of nitrogen-converting bacteria in leaf and matrix biofilms under high ammonium nitrogen (NH4+-N) loading. The 16S rRNA sequencing method was employed to explore the changes in bacterial communities in biofilms in CWs. The results showed that average removal rates of total nitrogen and NH4+-N in CW with V. natans reached 71.38% and 82.08%, respectively, representing increases of 24.19% and 28.79% compared with the control with artificial plant. Scanning electron microscope images indicated that high NH4+-N damaged the leaf cells of V. natans, leading to the cellular content release and subsequent increases of aqueous total organic carbon. However, the specific surface area and carrier function of V. natans were unaffected within 25 days. As a natural source of organic matters, submerged macrophyte provided organic matters for bacterial growth in biofilms. Bacterial composition analysis revealed the predominance of phylum Proteobacteria in CW with V. natans. The numbers of nitrifiers and denitrifiers in leaf biofilms reached 1.66 × 105 cells/g and 1.05 × 107 cells/g, as well as 2.79 × 105 cells/g and 7.41 × 107 cells/g in matrix biofilms, respectively. Submerged macrophyte significantly increased the population of nitrogen-converting bacteria and enhanced the expressions of nitrification genes (amoA and hao) and denitrification genes (napA, nirS and nosZ) in both leaf and matrix biofilms. Therefore, our study emphasized the influence of submerged macrophyte on biofilm functions and provided a scientific basis for nitrogen removal of biofilms in CWs.

Ecological role of reed belts in lakeside zone: Impacts on nutrient retention and bacterial community assembly during Hydrilla verticillata decomposition

Reed belts acting as basic nutrient filters are important parts of lake buffer riparian zones. However, little is known about their impacts on nutrient release and bacterial community during plant litter decomposition. In this study, a field experiment was conducted in west-lake Taihu to monitor the changes in nutrients, bacterial enzymatic activities, and bacterial community in plant debris during Hydrilla verticillata (H. verticillata) decomposition in open water (HvC) and reed belts (HvL) area for 126 days. We found that there was lower temperature but higher nutrient concentrations in overlying water in HvL than HvC. Partial least squares path modeling revealed that environmental parameters in overlying water had important impacts on bacterial activities and nutrient release (such as alkaline phosphatase, cellulase, and soluble sugar) and therefore affected dissolved organic matter components in plant debris. According to Illumina sequencing, 46,003 OTUs from 10 dominant phyla were obtained and Shannon index was higher in HvL than HvC at the same sampling time. Neutral community model explained 49% of bacterial community variance and immigration rate by the estimate of dispersal in HvC (Nm: 27,154) and HvL (Nm: 25,765), respectively. Null model showed stochastic factors governed the bacterial community assembly in HvC (66.67%) and HvL (87.28%). TP and pH were key factors affecting the bacterial community structure at the phylum level. More hubs and complex interactions among bacteria were observed in HvL than HvC. Function analysis showed bacterial community had important role in carbon, organic phosphorus, and nitrogen removal but phosphorus-starvation was detected in debris of H. verticillata. This study provides useful information for understanding the changes in nutrients and bacterial community in litter during H. verticillata decomposition and highlights the role of reed belts on retained plant litter to protect lake from pollution.

Do Microorganisms in Bathing Water in Guadeloupe (French West Indies) Have Resistance Genes?

Waterborne faecal contamination is a major public health concern. The main objectives of this study were to investigate faecal contamination and Escherichia coli (E. coli) antibiotic resistance in recreational fresh water from Guadeloupe and to characterise the microbiome and resistome composition in biofilms from submerged rocks. Significant faecal contamination was observed at 14 freshwater sites. E. coli predominated (62%), followed by Enterobacter cloacae (11%) and Acinetobacter spp. (11%). Of 152 E. coli isolated, none produced extended-spectrum beta-lactamases (ESBLs), but 7% showed resistance to streptomycin and 4% to tetracycline. Biofilm resistome analysis revealed clinically significant antibiotic-resistance genes (ARGs), including those coding for resistance to sulfonamides (sul1), carbapenems (blaKPC), and third-generation cephalosporins (blaCTX-M). Mobile genetic elements (MGEs) (intI1, intI2, intI3) linked to resistance to aminoglycosides, beta-lactams, tetracycline, as well as heavy metal resistance determinants (copA, cusF, czcA, merA) conferring resistance to copper, silver, cadmium, and mercury were also detected. Diverse bacterial phyla were found in biofilm samples, of which Proteobacteria, Bacteroidetes, Planctonomycetes, and Cyanobacteria were predominant. Despite the frequent presence of E. coli exceeding regulatory standards, the low levels of antibiotic-resistant bacteria in freshwater and of ARGs and MGEs in associated biofilms suggest limited antibiotic resistance in Guadeloupean recreational waters.

The Secchi disk depth to water depth ratio affects morphological traits of submerged macrophytes: Development patterns and ecological implications

Water clarity, represented by Secchi disk depth (SD), and water depth (WD) alter bottom light availability, and SD/WD is critical for morphological trait development of submerged macrophytes in freshwater ecosystems. However, the underlying mechanism and trait development patterns of submerged macrophytes to a decreasing SD/WD gradient remains largely unknown. Here, we performed a 42-day mesocosm experiment with the erect type submerged macrophyte, Hydrilla verticillata, along a decreasing SD/WD gradient to study the relationship of morphological trait development with light availability, to determine the critical SD/WD at which changes in the development of morphological traits occur, and to gain insights into the potential mechanism involved. The results indicate that most of the morphological traits, including biomass, relative growth rate, number of clonal propagules, and the root/shoot ratio decreased with a decrease in the SD/WD ratio. Conversely, plant height and shoot increment rate increased with a decrease in the SD/WD ratio. Principal component analysis indicated that the SD/WD ratio is critical in determining the growth, stability, and reproduction of H. verticillata, and that only SD/WD ratios ≥ 0.45 and ≥0.55 ensured growth ability and stability, respectively. Possible development patterns of functional traits in relation to SD/WD reduction were investigated, and patterns of key traits of H. verticillata were distinct from those of Vallisneria natans, indicating different strategies for the adaptation to conditions of decreasing light availability. These results highlight the role of adaptive changes in morphology, resource allocation and life strategies for the maintenance of growth, stability and resilience of submerged macrophytes in low light conditions. Our present study provides a basis from which we could enhance our understanding of the critical transition mechanisms involved in morphological trait development in response to bottom light availability.

Temporal variations in reactive oxygen species in biofilms of submerged macrophytes: The key role of microbial metabolism mediated by oxygen fluctuations

Reactive oxygen species (ROS) play a crucial role in the biogeochemistry of aquatic environments, yet their occurrence and accumulation in the biofilm of submerged macrophytes have been poorly documented. Herein, we first investigated the light-dark cycling fluctuations of biofilm microenvironment and the temporal variations of a representative ROS (O2•-) during biofilm succession on the macrophyte leaves and subsequently quantified the photochemical processes in biofilms. The sustained production of O2•- exhibited a distinct rhythmic fluctuation from 32.49 ± 0.56 μmol/kg to 72.56 ± 0.92 μmol/kg FW, which simultaneously fluctuated with the dissolved oxygen, redox potential, and pH, all driven by the alternating oxic-anoxic conditions of biofilms. The intensities of O2•- and ROS firstly increased and then decreased throughout biofilm succession. The O2•- concentrations in biofilms from different waters followed the order of rural river water > landscape lake water > aquaculture pond water, and the leaf photosynthesis and microbial community played a key role. ROS production was significantly associated with Actinobacteria, Proteobacteria and Bacteroidetes, with contributions of 44.6%, 32.8%, and 15.2%, respectively. Partial least squares path modeling structural equation analysis showed that ROS production in leaf biofilms was mainly related to the microenvironment and microbial metabolism. These findings will facilitate the development of ecological restoration strategies in aquatic environments.

Coupling of submerged macrophytes and epiphytic biofilms reduced methane emissions from wetlands: Evidenced by an antibiotic inhibition experiment

Wetlands are the largest natural methane source, but how submerged macrophytes affect methane emission remains controversial. In this study, the impacts of submerged macrophytes on methane fluxes, water purification, and epiphytic microbial community dynamics were investigated in simulated wetlands (with and without Hydrilla verticillata) treated with norfloxacin (NOR) for 24 days. Mean methane fluxes were significantly lower in treatments with Hydrilla verticillata (56.84-90.94 mg/m2/h) than bulks (65.96-113.21 mg/m2/h) (p < 0.05) during the experiment regardless of NOR. The relative conductivity (REC) values, H2O2, and malondialdehyde (MDA) contents increased in plant leaves, while water nutrients removal rates decreased with increasing NOR concentration at the same sampling time. The partial least squares path model analysis revealed that plant physiological indices and water nutrients positively affected methane fluxes (0.72 and 0.49, p < 0.001). According to illumina sequencing results of 16S rRNA and pmoA genes, α-proteobacteria (type II) and γ-proteobacteria (type I) were the dominant methanotroph classes in all epiphytic biofilms. The ratio of type I/type II methanotrophs and pmoA gene abundance in epiphytic biofilm was considerably lower in treatment with 16 mg/L NOR than without it (p < 0.05). pmoA gene abundance was negatively correlated with methane fluxes (p < 0.05). Additionally, the assembly of epiphytic bacterial community was mainly governed by deterministic processes, while stochastic dispersal limitation was the primary assembly process in the epiphytic methanotrophic community under NOR stress. The deterministic process gained more importance with time both in bacterial and methanotrophic community assembly. Network analysis revealed that relationships among bacteria in epiphytic biofilms weakened with time but associations among methanotrophic members were enhanced under NOR stress over time. It could be concluded that submerged macrophytes-epiphytic biofilms symbiotic system exhibited potential prospects to reduce methane emissions from wetlands under reasonable management.

Purification of aquaculture wastewater by macrophytes and biofilm systems: Efficient removal of trace antibiotics and enrichment of antibiotic resistance genes

The purification performance of aquaculture wastewater and the risk of antibiotic resistance genes (ARGs) dissemination in wetlands dominated by macrophytes remain unclear. Here, the purification effects of different macrophytes and biofilm systems on real aquaculture wastewater were investigated, as well as the distribution and abundance of ARGs. Compared to the submerged macrophytes, artificial macrophytes exhibited higher removal rates of TOC (58.80 ± 5.04 %), TN (74.50 ± 2.50 %), and TP (77.33 ± 11.66 %), and achieved approximately 79.92 % removal of accumulated trace antibiotics in the surrounding water. Additionally, the biofilm microbial communities on the surface of artificial macrophytes exhibited higher microbial diversity with fewer antibiotic-resistant bacteria (ARB) enrichment from the surrounding water. The absolute abundance of ARGs (sul1, sul2, and intI1) in the mature biofilm to be one to two orders of magnitude higher than that in the water. Although biofilms could decrease ARGs in the surrounding water by enriching ARB, the intricate network structure of biofilms further facilitated the proliferation of ARB and the dissemination of ARGs in water. Network analysis suggested that Proteobacteria and Firmicutes phyla were dominant and potential carriers of ARGs, contributing 69.00 % and 16.70 %, respectively. Our findings highlight that macrophytes and biofilm systems have great performance on aquaculture wastewater purification, but with high risk of ARGs.

Reed restoration decreased nutrients in wetlands with dredged sediments: Microbial community assembly and function in rhizosphere

Using dredged sediments as substrate for aquatic plants is a low-cost and ecological friendly way for in situ aquatic ecological restoration. However, the limited information available about how aquatic plant restoration affects the microbial ecology and nutrients in dredged sediments. In this study, nutrient contents, enzyme activities, and bacterial and archaeal communities in vertical sediment layers were determined in bulk and reed zones of wetlands constructed with dredged sediments in west Lake Taihu for three years. Reed restoration significantly decreased total nitrogen, total phosphorus, and organic carbon contents and increased alkaline phosphatase, urease, and sucrase activities compared to bulk area. Bacterial communities in vertical sediment layers had higher similarity in reed zone in comparison to bulk zone, and many bacterial and archaeal genera were only detected in reed rhizosphere zones. Compared with the bulk zone, the reed restoration area has a higher abundance of phylum Actinobacteriota, Hydrothermarchaeota, and class α-proteobacteria. The assembly process of the bacterial and archaeal communities was primarily shaped by dispersal limitation (67.03% and 32.97%, respectively), and stochastic processes were enhanced in the reed recovery area. Network analysis show that there were more complicated interactions among bacteria and archaea and low-abundance taxa were crucial in maintaining the microbial community stability in rhizosphere of reed zone. PICRUST2 analysis demonstrate that reed restoration promotes metabolic pathways related to C and N cycle in dredged sediments. These data highlight that using dredged sediments as substrates for aquatic plants can transform waste material into a valuable resource, enhancing the benefits to the environment.

Targeted elastin-like polypeptide fusion protein for near-infrared imaging of human and canine urothelial carcinoma

Cystoscopic visualization of bladder cancer is an essential method for initial bladder cancer detection and diagnosis, transurethral resection, and monitoring for recurrence. We sought to develop a new intravesical imaging agent that is more specific and sensitive using a polypeptide based NIR (near-infrared) probe designed to detect cells bearing epidermal growth factor receptors (EGFR) that are overexpressed in 80% of urothelial carcinoma (UC) cases. The NIR imaging agent consisted of an elastin like polypeptide (ELP) fused with epidermal growth factor (EGF) and conjugated to Cy5.5 to give Cy5.5-N24-EGF as a NIR contrast agent. In addition to evaluation in human cells and tissues, the agent was tested in canine cell lines and tissue samples with naturally occurring invasive UC. Flow cytometry and confocal microscopy were used to test cell-associated fluorescence of the probe in T24 human UC cells, and in K9TCC-SH (high EGFR expression) and K9TCC-Original (low EGF expression) canine cell lines. The probe specifically engages these cells through EGFR within 15 min of incubation and reached saturation within a clinically relevant 1 h timeframe. Furthermore, ex vivo studies with resected canine and human bladder tissues showed minimal signal from normal adjacent tissue and significant NIR fluorescence labeling of tumor tissue, in good agreement with our in vitro findings. Differential expression of EGFR ex vivo was revealed by our probe and confirmed by anti-EGFR immunohistochemical staining. Taken together, our data suggests Cy5.5-ELP-EGF is a NIR probe with improved sensitivity and selectivity towards BC that shows excellent potential for clinical translation.