Conversion of coastal wetland to aquaculture ponds decreased N2O emission: Evidence from a multi-year field study

Stocking filter-feeder in fed fish aquaculture pond: Unexpected Aggravation of nitrous oxide emission

Intensive farming of fed fish could produce large amounts of uneaten feed and feces, potentially leading to increased nitrous oxide (N2O) emissions. Filter-feeding fish can ingest residual feed and feces, but it is unclear whether introducing them into fed fish farming ponds could reduce N2O emissions. This study employed monoculture of fed largemouth bass (Micropterus salmoides, LB) and polyculture of LB with filter-feeding silver carp (Hypophthalmichthys molitrix, SC) at density ratios of 18:1, 9:1 and 4.5:1 to compare the N2O emission characteristics. The results showed that silver carp could indeed feed on largemouth bass feces, and isotope mixing model indicated that feces was the second largest contributor to the food of silver carp, reaching 14.75 %-15.56 %. However, polyculture of the two species did not or even increased N2O emission flux at water-air interface and its release potential in sediment. Increased mineralization, nitrification and denitrification rates were observed in polyculture systems, particularly at high stocking densities of silver carp. Also, the higher NH4+ accumulation were found across sediment-water interface within polyculture systems. Metagenome revealed that polyculture disturbed the microbial community structure and increased the abundance of Burkholderiales and Steroidobacteraceae. Moreover, polyculture increased the abundance of nitrogen-cycling functional genes, including gdhA, hao, nirB and norB, potentially contributing to the elevated N2O emissions. Structural equation model highlighted that polyculture of largemouth bass and silver carp could drive N2O emissions, mainly through increased sedimental NH4+ concentration and microbial activity. These findings indicate that the introduction of extractive filter-feeding fish into fed fish farming ponds could not reduce N2O emissions, implying the need for optimized management strategies to balance aquaculture productivity with environmental sustainability.

Nutrient enrichment by high aquaculture effluent input exacerbates imbalances between methane production and oxidation in mangrove sediments

Frequent aquaculture activities introduce substantial nutrients into mangrove ecosystems; however, the impact of this nutrient enrichment on methane (CH4) emissions and the associated microbial communities remains largely unexplored. In this study, we used the static chamber method, combined with 16S rRNA-based, metagenomic sequencing and binning techniques, to investigate the emission patterns of greenhouse gases (GHGs), with a particular focus on CH4, in mangroves subjected to different levels of effluents. The results showed that the effluent input decreased the mineral protection of sediment carbon (C) pools and increased C loss by more than double. In particular, high effluent input increased CH4 emissions by 243.3 %. Random forest analysis revealed that changes in methanogens were an important factor in explaining the variation of CH4 emissions. Amplicon data showed that the proportion of methylotrophic methanogens increased after effluent input, and metagenomic binning further attributed this change to the adaptability of methylotrophic methanogens to the substances transporting by the effluent. The enhanced hypoxia in sediments resulting from effluent input promoted the transition of methanotrophic communities from aerobic to anaerobic types and made anaerobic oxidation of CH4 more reliant on sulfur reduction rather than nitrate reduction. The PLS model further revealed that the nutrients brought by effluent input stimulated an increase in DOC content which induced an imbalance between CH4 production and oxidation in sediments by facilitating methanogens but inhibiting methanotrophs, ultimately resulting in an increase in CH4 fluxes. These findings underscore the significance of mangroves receiving effluent input as critical consequent reactors, highlighting the necessity to consider effects of high nutrient enrichment by aquaculture effluent input on GHG emissions and blue C potential in mangroves.

Response of key nitrogen removal processes in estuarine salt marshes to different plant harvesting patterns varies significantly across different time scales

Estuarine wetlands are crucial in mitigating eutrophication in estuarine waters through plant uptake and microbial transformation. Nitrogen is one of the main nutrients removed. However, without proper plant harvesting, the nitrogen absorbed by plants can return to the water as litter during autumn and winter, potentially causing secondary pollution. This issue has been underexplored in natural estuarine wetlands. To address this, we conducted an in-situ survey at Chongming Dongtan to examine how nitrogen removal processes respond to different harvesting seasons and frequencies over time. The study found that the response of soil nitrification and denitrification to plant harvesting on tidal flats varied by time scales and harvesting patterns. Short-term responses of soil nitrification and denitrification depended on the harvesting season. Annually, combining plant uptake and soil denitrification, autumn and winter harvesting both improved nitrogen removal, with autumn being the most effective, boosting it by 73.0% and 61.7%, respectively, compared to no harvesting. While harvesting twice in summer and autumn significantly increased plant nitrogen uptake (p < 0.05), the overall removal (316.76 g N m-2) was less than with no harvesting (323.08 g N m-2) when soil denitrification was considered. Redundancy analysis and structural equation modelling indicated that, in the short term, harvesting impacted soil nitrification and denitrification through redox potential (Eh) and temperature, while, annually, the effects primarily depended on the balance between Eh and soil organic carbon (SOC). These results provide practical strategies for large-scale sustainable ecological management of plants in the Yangtze River estuary wetlands.

Impact of carbon/nitrogen ratio on sequencing batch biofilm reactors initiated with different seed sludges for treating actual mariculture effluents

The impact of carbon/nitrogen (C/N) ratio on sequencing batch biofilm reactor (SBBR) initiated with different seed sludges for treating actual mariculture effluent was explored. Increasing the C/N ratio significantly enhanced the nitrogen removal efficiency, achieving average removal efficiency of 95% for ammonia nitrogen and 73% for total nitrogen at ratio of 30, while the impact of seed sludge was minimal. High C/N ratio promoted the secretion of tightly bound extracellular polymeric substances (TB-EPS), which showed significant correlation with nitrogen removal. Interactions between bacteria and archaea were enhanced and conditionally rare or abundant taxa were the keystone taxa. High C/N ratio inhibited the relative abundance of ammonia-oxidizing archaea (Candidatus_Nitrosopumilus) and bacteria (Nitrosomonas), but promoted the heterotrophic nitrification-aerobic denitrification bacteria (Halomonas). The expression of nitrogen removal functional genes significantly correlated with functional genera. This study emphasized the crucial role of high C/N ratios in biological nitrogen removal from actual mariculture effluent.

Research Status and Development Trend of Greenhouse Gas in Wetlands: A Bibliometric Visualization Analysis

With the intensification of global warming, wetland greenhouse gas (GHG) emissions have attracted worldwide attention. However, the scientific understanding of wetland GHGs is still limited. To gain a comprehensive and systematic understanding of the current research status and development trends in wetland GHGs. We selected 1627 papers related to wetland GHG research from the Web of Science Core Collection database and used the bibliometric visualization analysis method to reveal the annual publication, main core research forces, research hotspots, and trends in this field. The results showed that the research in this field shows a steady upward trend. United States research institutions and scholars play a key role in this field. The research on "climate change" based on three major wetland GHGs (carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O)) has been continuously gaining popularity. In recent years, "water" has become an emerging core topic. More and more studies have focused on enhancing wetland pollutant treatment capacity, improving wetland ecosystem productivity, maintaining water level stability, strengthening blue carbon sink function, exploring remote sensing applications in wetlands, and promoting wetland restoration to reduce GHG emissions. Furthermore, we discussed the influencing factors of the emission of CO2, CH4, and N2O in wetlands and summarized the potential methods to reduce GHG emissions. The findings provide scientific guidance and reference on wetland sustainable development and GHG emission reduction.

Aquacultural source of nitrous oxide revealed by nitrogen isotopes

The rapid expansion of coastal aquaculture has led to an increase in the coverage of aquaculture ponds, where intense feed-derived nitrogen is causing significant emissions of nitrous oxide (N2O). Multiple N2O production pathways and the relative importance of water column vs. sedimentary production in aquaculture ponds remain uncertain. Clarifying these pathways is vital for sustainable aquaculture development. Using 15N-labeled dissolved inorganic nitrogen, the pathways and rates of N2O production in subtropical aquaculture ponds located in south China, cultivating whiteleg shrimp, Japanese seabass, and giant river prawn, were successfully characterized. Total N2O production rates ranged from 6 to 70 µmol-N m-2 d-1, with the shrimp pond exhibiting the highest total N2O production rates, followed by ponds for seabass and prawn. These differences are primarily due to varying feed amounts causing differences in dissolved nutrients in water column and sediment. Particularly, nutrient and organic matter accumulation at the surface sediment stimulated N2O production. The oxygenated sediment on a centimeter scale could produce substantially more N2O compared to the water column above on a meter scale. Partial denitrification, i.e., nitrate and nitrite reduction to N2O, was more important (> 60 %) for N2O production in aquaculture ponds. The availability of nitrite is likely a major factor driving partial denitrification for both sedimentary and water column N2O production.

Comprehensive assessment of three crayfish culture modes: From production performance to environmental sustainability

Integrated agriculture-aquaculture has emerged as a promising ecological development model. Crayfish, a popular aquaculture species, are traditionally reared either in monoculture ponds (mono-C) or in rice-crayfish polyculture system (poly-RC). In this study, we introduced a novel polyculture system by combining fruit tree with crayfish (poly-FC), aiming to compare these three crayfish culture modes in terms of production performance and ecological sustainability. The results indicated that crayfish reared in the two polyculture modes exhibited significantly higher specific growth rate and condition factor compared to those in mono-C. Crayfish cultured in poly-FC also showed better muscle quality and higher levels of crude fat and flavor or essential amino acids. Isotope mixing model showed that feed and benthic animals were the primary food sources of crayfish in mono-C, whereas aquatic plants, fruit litter or rice contributed more to those in polyculture modes. For greenhouse gas emissions, poly-FC mode emitted almost no CO2 and N2O even favored negative CH4 emission, while poly-RC and mono-C modes showed positive emissions of CH4 and CO2, respectively. Supported by metagenomics, the sink of CH4 in poly-FC was probably due to the lower mcr abundance but the higher pmo abundance in water. The low production and emission of N2O in poly-FC might result from the low-abundant Nitrospirae_bacterium and its coding gene norC in sediment, consistent with the lower denitrification rate but the higher NO3- concentration than mono-C. Overall, our findings reveal the superiority of polyculture of fruit tree with crayfish in terms of production performance and greenhouse gas emissions in the system.

Exploration of nitrogen sources and transformation processes in eutrophic estuarine zones based on DOM and stable isotope compositions

Our study examines nitrogen sources and transformations in Xiamen Bay, where eutrophication has increased due to higher nitrogen levels. By analyzing dissolved organic matter (DOM) and nitrate stable isotopes (δ15N-NO3-and δ18O-NO3-), the study finds that nitrate in low salinity areas is influenced by freshwater-seawater mixing and biogeochemical processes, while in high salinity areas, it is mainly affected by physical mixing. Bayesian mixing model (MixSIAR) results show that the primary nitrate sources are fecal matter and sewage, followed by atmospheric deposition. During the high flow period, DOM may facilitate nitrogen transformation and release through processes such as degradation or mineralization. In contrast, during the low flow period, the system is mainly influenced by the physical mixing of saline and freshwater. Studies have shown that DOM can indicate the biogeochemical intensity in water bodies, further identifying the main factors influencing the distribution and transformation processes of nitrate content, providing a basis for mitigating eutrophication in estuarine areas.

Variability in N2O emission controls among different ponds within a hilly watershed

While it is well established that small water bodies like ponds play a disproportionately large role in contributing to N2O emissions, few studies have focused on lowland ponds in hilly watersheds. Here, we explored the characteristics of N2O concentrations and emissions from various typical ponds (village, tea, forested, and aquaculture ponds) in a hilly watershed and examined the specific controls influencing N2O production. Our findings revealed that tea ponds exhibited the highest N2O flux (8.42 ± 8.23 μmol m-2 d-1), which was 2.8 to 3.3 times greater than other types of ponds. Remarkable seasonal variations were observed in tea and forested ponds due to the seasonality of nutrient-enriched runoff, whereas such variations were less pronounced in village and aquaculture ponds. Key factors such as nitrogen levels, temperature, and dissolved oxygen (DO) emerged as the primary controls of N2O concentrations in ponds, heavily influenced by land use and human activities in their drainage areas. Specifically, N2O production in tea and aquaculture ponds was driven by N inputs from fertilization and feed, respectively, while DO levels governed the process in village and forested ponds, influenced by abundant algae and forest vegetation. This study emphasizes that environmental factors predominantly drive N2O production in ponds within hilly watersheds, but land use in the pond drainages acts as an indirect yet crucial influence. This highlights the need for future research to develop targeted emission reduction strategies based on land use to effectively mitigate N2O emissions, promising a path toward more sustainable and climate-friendly watershed management.

Significant diurnal variations in nitrous oxide (N2O) emissions from two contrasting habitats in a large eutrophic lake (Lake Taihu, China)

Algae and macrophytes in lake ecosystems regulate nitrous oxide (N2O) emissions from eutrophic lakes. However, knowledge of diurnal N2O emission patterns from different habitats remains limited. To understand the diurnal patterns and driving mechanisms of N2O emissions from contrasting habitats, continuous in situ observations (72 h) of N2O fluxes from an algae-dominated zone (ADZ) and reed-dominated zone (RDZ) in Lake Taihu were conducted using the Floating Chamber method. The results showed average N2O emission fluxes of 0.15 ± 0.06 and 0.02 ± 0.04 μmol m-2 h-1 in the ADZ and RDZ in autumn, respectively. The significantly higher (p < 0.05) N2O fluxes in the ADZ were mainly attributed to differences in nitrogen (N) levels. The results also showed significant diurnal differences (p < 0.05) in the N2O emission fluxes within the ADZ and RDZ, and daytime fluxes were significantly higher (p < 0.05) than nighttime fluxes. The statistical results indicated that N2O emissions from the ADZ were mainly driven by diurnal variations in N loading and the dissolved oxygen (DO) concentration, and those from the RDZ were more influenced by DO, redox potential, and pH. Finally, we determined the proper time for routine monitoring of N2O flux in the two habitats. Our results highlight the importance of considering diverse habitats and diurnal variations when estimating N2O budgets at a whole-lake scale.

Losses and destabilization of soil organic carbon stocks in coastal wetlands converted into aquaculture ponds

Coastal-wetlands play a crucial role as carbon (C) reservoirs on Earth due to their C pool composition and functional sink, making them significant for mitigating global climate change. However, due to the development and utilization of wetland resources, many wetlands have been transformed into other land-use types. The current study focuses on the alterations in soil organic-C (SOC) in coastal-wetlands following reclamation into aquaculture ponds. We conducted sampling at 11 different coastal-wetlands along the tropical to temperate regions of the China coast. Each site included two community types, one with solely native species (Suaeda salsa, Phragmites australis and Mangroves) and the other with an adjacent reclaimed aquaculture pond. Across these 11 locations we compared SOC stock, active OC fractions, and soil physicochemical properties between coastal wetlands and aquaculture ponds. We observed that different soil uses, sampling sites, and their interaction had significant effects on SOC and its stock (p < .05). Reclamation significantly declined SOC concentration at depths of 0-15 cm and 15-30 cm by 35.5% and 30.3%, respectively, and also decreased SOC stock at 0-15 cm and 15-30 cm depths by 29.1% and 37.9%, respectively. Similar trends were evident for SOC stock, labile organic-C, dissolved organic-C and microbial biomass organic-C concentrations (p < .05), indicating soil C-destabilization and losses from soil following conversion. Soils in aquaculture ponds exhibited higher bulk density (BD; 11.3%) and lower levels of salinity (61.0%), soil water content (SWC; 11.7%), total nitrogen (TN) concentration (23.8%) and available-nitrogen concentration (37.7%; p < .05) than coastal-wetlands. Redundancy-analysis revealed that pH, BD and TN concentration were the key variables most linked with temporal variations in SOC fractions and stock between two land use types. This study provides a theoretical basis for the rational utilization and management of wetland resources, the achievement of an environment-friendly society, and the preservation of multiple service functions within wetland ecosystems.

The urgent need to reduce phosphorus discharges for sustainable mangrove wetland management

Phosphorus affects microbial metabolic activity, nitrogen and carbon cycling in mangrove sediment, but its influence on carbon stability and greenhouse gases emission remains unclear. This study compared greenhouse gases (CO2, N2O, and CH4) emissions from mangrove sediment receiving wastewater containing various phosphorus concentrations, and evaluated its long term effect on sediment carbon flux when phosphorus pollution is eliminated. Significant increases in greenhouse gases flux and decrease of total organic carbon and readily oxidizable organic carbon in the sediment were observed after phosphorus discharge. Specifically, the N2O flux was reduced significantly at high phosphorus levels while the CO2 flux and the microbial biomass organic carbon was increased. The copy numbers of ammonia oxidation (AOA-amoA, AOB-amoA) gene, denitrification (narG, nirK) gene and methanogenesis (mcrA) gene increased with the increasing phosphorus concentration. During the wastewater discharge period for 70 days, the global warming potential of sediment flux at high phosphorus discharge condition was more than 4 times that of the control group, and the loss of total organic carbon and readily oxidizable organic carbon was 4.66 % and 7.1 %, respectively. During the remediation period (71-101 days), the greenhouse gases flux decreased rapidly, ends up with a similar level of the control group. Our results indicate that using mangrove wetland for pollution minimization in the coastal aquaculture industry could increase greenhouse gases emisison significantly, it is therefore essential to reduce phosphorus discharges from various anthropogenic activities, and local authorities must set up more stringent discharge standards in the future.

Greenhouse gases emissions from aquaculture ponds: Different emission patterns and key microbial processes affected by increased nitrogen loading

Global aquaculture production is expected to rise to meet the growing demand for food worldwide, potentially leading to increased anthropogenic greenhouse gases (GHG) emissions. As the demand for fish protein increases, so will stocking density, feeding amounts, and nitrogen loading in aquaculture ponds. However, the impact of GHG emissions and the underlying microbial processes remain poorly understood. This study investigated the GHG emission characteristics, key microbial processes, and environmental drivers underlying GHG emissions in low and high nitrogen loading aquaculture ponds (LNP and HNP). The N2O flux in HNP (43.1 ± 11.3 μmol m-2 d-1) was significantly higher than in LNP (-11.3 ± 25.1 μmol m-2 d-1), while the dissolved N2O concentration in HNP (52.8 ± 7.1 nmol L-1) was 150 % higher than in LNP (p < 0.01). However, the methane (CH4) and carbon dioxide (CO2) fluxes and concentrations showed no significant differences (p > 0.05). N2O replaced CH4 as the main source of Global Warming Potential in HNP. Pond sediments acted as a sink for N2O but a source for CH4 and CO2. The △N2O/(△N2O + △N2) in HNP (0.015 ± 0.007 %) was 7.7-fold higher than in LNP (0.002 ± 0.001 %) (p < 0.05). The chemical oxygen demand to NO2-N ratio was the most important environmental factor explaining the variability of N2O fluxes. Ammonia-oxidizing bacteria driven nitrification in water was the predominant N2O source, while comammox-driven nitrification and nosZII-driven N2O reduction in water were key processes for reducing N2O emission in LNP but decreased in HNP. The strong CH4 oxidization by Methylocystis and CO2 assimilation by algae resulted in low CH4 emissions and CO2 sink in the aquaculture pond. The Mantel test indicated that HNP increased N2O fluxes mainly through altering functional genes composition in water and sediment. Our findings suggest that there is a significant underestimation of N2O emissions without considering the significantly increased △N2O/(△N2O + △N2) caused by increased nitrogen loading.

Drainage ditches are significant sources of indirect N2O emissions regulated by available carbon to nitrogen substrates in salt-affected farmlands

Agriculture is a main source of nitrous oxide (N2O) emissions. In agricultural systems, direct N2O emissions from nitrogen (N) addition to soils have been widely investigated, whereas indirect emissions from aquatic ecosystems such as ditches are poorly known, with insufficient data available to refine the IPCC emission factor. In this contribution, in situ N2O emissions from two ditch water‒air interfaces based on a diffusion model were investigated (almost once per month) from June 2021 to December 2022 in an intensive arable catchment with high N inputs and salt-affected conditions in the Qingtongxia Irrigation District, northwestern China. Our results implied that agricultural ditches (mean 148 μg N m-2 h-1) were significant sources for N2O emissions, and were approximately 2.1 times greater than those of the Yellow River directly connected to ditches. Agronomic management strategies increased N2O fluxes in summer, while precipitation events decreased N2O fluxes. Agronomic management strategies, including fertilization (294--540 kg N hm-2) and irrigation on farmland, resulted in enhanced diffuse N loads in drain water, whereas precipitation diluted the dissolved N2O concentration in ditches and accelerated the ditch flow rate, leading to changes in the residence time of N-containing substances in water. The spatial analysis showed that N2O fluxes (202-233 μg N m-2 h-1) in the headstream and upstream regions of ditches due to livestock and aquaculture pollution sources were relatively high compared to those in the midstream and downstream regions (100-114 μg N m-2 h-1). Furthermore, high available carbon (C) relative to N reduced N2O fluxes at low DOC:DIN ratio levels by inhibiting nitrification. Spatiotemporal variations in the N2O emission factor (EF5) across ditches with higher N resulted in lower EF5 and a large coefficient of variation (CV) range. EF5 was 0.0011 for the ditches in this region, while the EF5 (0.0025) currently adopted by the IPCC is relatively high. The EF5 variation was strongly controlled by the DOC:DIN ratio, TN, and NO3--N, while salinity was also a nonnegligible factor regulating the EF5 variation. The regression model incorporating NO3--N and the DOC:DIN ratio could greatly enhance the predictions of EF5 for agricultural ditches. Our study filled a key knowledge gap regarding EF5 from agricultural ditches in salt-affected farmland and offered a field investigation for refining the EF5 currently used by the IPCC.

Temporal enrichment of comammox Nitrospira and Ca. Nitrosocosmicus in a coastal plastisphere

Plastic marine debris is known to harbor a unique microbiome (termed the "plastisphere") that can be important in marine biogeochemical cycles. However, the temporal dynamics in the plastisphere and their implications for marine biogeochemistry remain poorly understood. Here, we characterized the temporal dynamics of nitrifying communities in the plastisphere of plastic ropes exposed to a mangrove intertidal zone. The 39-month colonization experiment revealed that the relative abundances of Nitrospira and Candidatus Nitrosocosmicus representatives increased over time according to 16S rRNA gene amplicon sequencing analysis. The relative abundances of amoA genes in metagenomes implied that comammox Nitrospira were the dominant ammonia oxidizers in the plastisphere, and their dominance increased over time. The relative abundances of two metagenome-assembled genomes of comammox Nitrospira also increased with time and positively correlated with extracellular polymeric substances content of the plastisphere but negatively correlated with NH4+ concentration in seawater, indicating the long-term succession of these two parameters significantly influenced the ammonia-oxidizing community in the coastal plastisphere. At the end of the colonization experiment, the plastisphere exhibited high nitrification activity, leading to the release of N2O (2.52 ng N2O N g-1) in a 3-day nitrification experiment. The predicted relative contribution of comammox Nitrospira to N2O production (17.9%) was higher than that of ammonia-oxidizing bacteria (4.8%) but lower than that of ammonia-oxidizing archaea (21.4%). These results provide evidence that from a long-term perspective, some coastal plastispheres will become dominated by comammox Nitrospira and thereby act as hotspots of ammonia oxidation and N2O production.

Community assembly of comammox Nitrospira in coastal wetlands across southeastern China

Complete ammonia oxidizers (comammox Nitrospira) are ubiquitous in coastal wetland sediments and play an important role in nitrification. Our study examined the impact of habitat modifications on comammox Nitrospira communities in coastal wetland sediments across tropical and subtropical regions of southeastern China. Samples were collected from 21 coastal wetlands in five provinces where native mudflats were invaded by Spartina alterniflora and subsequently converted to aquaculture ponds. The results showed that comammox Nitrospira abundances were mainly influenced by sediment grain size rather than by habitat modifications. Compared to S. alterniflora marshes and native mudflats, aquaculture pond sediments had lower comammox Nitrospira diversity, lower clade A.1 abundance, and higher clade A.2 abundance. Sulfate concentration was the most important factor controlling the diversity of comammox Nitrospira. The response of comammox Nitrospira community to habitat change varied significantly by location, and environmental variables accounted for only 11.2% of the variations in community structure across all sites. In all three habitat types, dispersal limitation largely controlled the comammox Nitrospira community assembly process, indicating the stochastic nature of these sediment communities in coastal wetlands. IMPORTANCE Comammox Nitrospira have recently gained attention for their potential role in nitrification and nitrous oxide (N2O) emissions in soil and sediment. However, their distribution and assembly in impacted coastal wetland are poorly understood, particularly on a large spatial scale. Our study provides novel evidence that the effects of habitat modification on comammox Nitrospira communities are dependent on the location of the wetland. We also found that the assembly of comammox Nitrospira communities in coastal wetlands was mainly governed by stochastic processes. Nevertheless, sediment grain size and sulfate concentration were identified as key variables affecting comammox Nitrospira abundance and diversity in coastal sediments. These findings are significant as they advance our understanding of the environmental adaptation of comammox Nitrospira and how future landscape modifications may impact their abundance and diversity in coastal wetlands.

Effects of conversion of coastal marshes to aquaculture ponds on sediment anaerobic CO2 production and emission in a subtropical estuary of China

The extensive conversion of carbon-rich coastal wetland to aquaculture ponds in the Asian Pacific region has caused significant changes to the sediment properties and carbon cycling. Using field sampling and incubation experiments, the sediment anaerobic CO₂ production and CO₂ emission flux were compared between a brackish marsh and the nearby constructed aquaculture ponds in the Min River Estuary in southeastern China over a three-year period. Marsh sediment had a higher total carbon and lower C:N ratio than aquaculture pond sediment, suggesting the importance of marsh vegetation in supplying labile organic carbon to the sediment. Conversion to aquaculture ponds significantly decreased sediment anaerobic CO₂ production rates by 69.2% compared to the brackish marsh, but increased CO₂ emission, turning the CO₂ sink (-490.8 ± 42.0 mg m^-2 h^-1 in brackish marsh) into a source (6.2 ± 3.9 mg m^-2 h^-1 in aquaculture pond). Clipping the marsh vegetation resulted in the highest CO₂ emission flux (382.6 ± 46.7 mg m^-2 h^-1), highlighting the critical role of marsh vegetation in capturing and sequestering carbon. Sediment anaerobic CO₂ production and CO₂ uptake (in brackish marsh) and emission (in aquaculture ponds) were highest in the summer, followed by autumn, spring and winter. Redundancy analysis and structural equation modeling showed that the changes of sediment temperature, salinity and total carbon content accounted for more than 50% of the variance in CO₂ production and emission. Overall, the results indicate that vegetation clearing was the main cause of change in CO₂ production and emission in the land conversion, and marsh replantation should be a primary strategy to mitigate the climate impact of the aquaculture sector.

Microorganisms carrying nosZ I and nosZ II share similar ecological niches in a subtropical coastal wetland

Nitrous oxide (N₂O) reducers are the only known sink for N₂O and pivotal contributors to N₂O mitigation in terrestrial and water ecosystems. However, the niche preference of nosZ I and nosZ II carrying microorganisms, two divergent clades of N₂O reducers in coastal wetlands, is not yet well documented. In this study, we investigated the abundance, community structure and co-occurrence network of nosZ I and nosZ II carrying microorganisms and their driving factors at three depths in a subtropical coastal wetland with five plant species and a bare tidal flat. The taxonomic identities differed between nosZ I and nosZ II carrying microorganisms, with nosZ I sequences affiliated with Alphaproteobacteria and Betaproteobacteria while nosZ II sequences with Gemmatimonadetes, Verrucomicrobia, Gammaproteobacteria, and Chloroflexi. The abundances of nosZ I and nosZ II decreased with increasing soil depths, and were positively associated with salinity, total carbon (TC) and total nitrogen (TN). Random forest analysis showed that salinity was the strongest predictor for the abundances of nosZ I and nosZ II. Salinity, TC and TN were the major driving forces for the community structure of nosZ I and nosZ II carrying microorganisms. Moreover, co-occurrence analysis showed that 92.2 % of the links between nosZ I and nosZ II were positive, indicating that nosZ I and nosZ II carrying microorganisms likely shared similar ecological niches. Taken together, we provided new evidence that nosZ I and nosZ II carrying microorganisms shared similar ecological niches in a subtropical estuarine wetland, and identified salinity, TC and TN serving as the most important environmental driving forces. This study advances our understanding of the environmental adaptation and niche preference of nosZ I and nosZ II carrying microorganisms in coastal wetlands.