A near-complete species-level phylogeny of uropeltid snakes harnessing historical museum collections as a DNA source

Museomics help resolving the phylogeny of snowfinches (Aves, Passeridae, Montifringilla and allies)

Historical specimens from museum collections provide a valuable source of material also from remote areas or regions of conflict that are not easily accessible to scientists today. With this study, we are providing a taxon-complete phylogeny of snowfinches using historical DNA from whole skins of an endemic species from Afghanistan, the Afghan snowfinch, Pyrgilauda theresae. To resolve the strong conflict between previous phylogenetic hypotheses, we generated novel mitogenome sequences for selected taxa and genome-wide SNP data using ddRAD sequencing for all extant snowfinch species endemic to the Qinghai-Tibet Plateau (QTP) and for an extended intraspecific sampling of the sole Central and Western Palearctic snowfinch species (Montifringilla nivalis). Our phylogenetic reconstructions unanimously refuted the previously suggested paraphyly of genus Pyrgilauda. Misplacement of one species-level taxon (Onychostruthus tazcanowskii) in previous snowfinch phylogenies was undoubtedly inferred from chimeric mitogenomes that included heterospecific sequence information. Furthermore, comparison of novel and previously generated sequence data showed that the presumed sister-group relationship between M. nivalis and the QTP endemic M. henrici was suggested based on flawed taxonomy. Our phylogenetic reconstructions based on genome-wide SNP data and on mitogenomes were largely congruent and supported reciprocal monophyly of genera Montifringilla and Pyrgilauda with monotypic Onychostruthus being sister to the latter. The Afghan endemic P. theresae likely originated from a rather ancient Pliocene out-of-Tibet dispersal probably from a common ancestor with P. ruficollis. Our extended trans-Palearctic sampling for the white-winged snowfinch, M. nivalis, confirmed strong lineage divergence between an Asian and a European clade dated to 1.5 - 2.7 million years ago (mya). Genome-wide SNP data suggested subtle divergence among European samples from the Alps and from the Cantabrian mountains.

A new species of Uropeltis Cuvier, 1829 (Serpentes: Uropeltidae) from the eastern escarpment of the southern Western Ghats, India

A new species of the uropeltid ('shieldtail') snake genus Uropeltis is described based on eight specimens from the southern part of peninsular India's Western Ghats. Uropeltis caudomaculata sp. nov. is phenotypically and genetically most similar to U. pulneyensis (Beddome, 1863), but differs primarily in having more ventral scales and in being restricted to the eastern escarpment of the Western Ghats between Meghamalai and approximately 15 km East of Munnar rather than in the Palani Hills, as well as differing in DNA nucleotide sequences. From verified records, we consider U. pulneyensis to be known thus far only from the Palani Hills, and we designate a lectotype for the species. Reconsideration of the holotype of Silybura guentheri Beddome, 1878 from Meghamalai leads us to conclude that it should be removed from the subjective junior synonymy of U. pulneyensis and be considered a distinct though very poorly known species, Uropeltis guentheri comb. nov.

Two new species of the shieldtail snake genus Rhinophis Hemprich, 1820 (Serpentes: Uropeltidae), from the Rakwana and the Knuckles Massifs of Sri Lanka

Two new species of the uropeltid snake genus Rhinophis Hemprich, 1820 are described from Sri Lanka. Rhinophis martin sp. nov. is described from 11 type specimens from the Rakwana Massif, and another 22 specimens from the same region are referred to this new species. Rhinophis dinarzardae sp. nov. is described from eight type specimens from the Knuckles Massif, and another 64 specimens from the Knuckles and adjacent hills are referred to this new species. Rhinophis martin sp. nov. has apparently not been reported previously under any scientific name, but is distinct in scalation, colour pattern and DNA. Rhinophis dinarzardae sp. nov. has long-been confused with the superficially similar R. philippinus, from which it differs by having more ventral scales, by occurring in the northern part of the Knuckles Massif and adjacent hills to the West rather than in the Central Highlands upland region (and possibly areas to the South and West) of Sri Lanka, and in DNA sequence data. The new descriptions take the inventory of currently recognised, named uropeltid species in Sri Lanka to 20, all members of the genus Rhinophis.

Rediscovery and systematics of Rhinophis fergusonianus Boulenger, 1896 (Serpentes: Uropeltidae) from Indias Western Ghats

The shieldtail snake Rhinophis fergusonianus Boulenger, 1896 was previously known only from the holotype specimen collected approximately 130 years ago from an imprecise Indian locality (Cardamom Hills). We report the rediscovery of this species from four localities, from low-elevation hills on both sides of the Palghat Gap in the southern part of the Western Ghats of peninsular India. We document new specimens of R. fergusonianus and provide a reassessment of the systematics of the species based on external morphology and DNA-sequence data. We also provide a revised key to the identification of Indian species of Rhinophis.

On the taxonomy of Uropeltis petersi (Beddome, 1878) (Serpentes: Uropeltidae) and description of a new, closely related species from the Western Ghats of India

A new species of the uropeltid snake genus Uropeltis Cuvier, 1829 is described from the environs of Munnar in the Anamalai hils of the Western Ghats of peninsular India. Uropeltis tricuspida sp. nov. superficially resembles the poorly known and closely related U. petersi, but differs from that species in having more ventral and subcaudal scales, and a tri- rather than bicuspid posterior tip to the terminal scute.