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For: Jansen RK, Raubeson LA, Boore JL, dePamphilis CW, Chumley TW, Haberle RC, Wyman SK, Alverson AJ, Peery R, Herman SJ, Fourcade HM, Kuehl JV, McNeal JR, Leebens-Mack J, Cui L. Methods for obtaining and analyzing whole chloroplast genome sequences. Methods Enzymol 2005;395:348-84. [PMID: 15865976 DOI: 10.1016/s0076-6879(05)95020-9] [Citation(s) in RCA: 265] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Number Cited by Other Article(s)
1
Zhan Q, Huang Y, Xue X, Chen Y. Comparative chloroplast genomics and phylogenetic analysis of Oreomecon nudicaulis (Papaveraceae). BMC Genom Data 2024;25:49. [PMID: 38816818 PMCID: PMC11141030 DOI: 10.1186/s12863-024-01236-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Accepted: 05/24/2024] [Indexed: 06/01/2024]  Open
2
Hu X, Liu Y, Chen J, Su X. The complete chloroplast genome of Oxytropis ochrocephala Bunge 1874 (Fabaceae) and its phylogenetic analysis. Mitochondrial DNA B Resour 2024;9:641-646. [PMID: 38770145 PMCID: PMC11104710 DOI: 10.1080/23802359.2024.2350626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Accepted: 04/28/2024] [Indexed: 05/22/2024]  Open
3
Zhou C, Tao F, Long R, Yang X, Wu X, Xiang L, Zhou X, Girdthai T. The complete chloroplast genome of Mussaenda pubescens and phylogenetic analysis. Sci Rep 2024;14:9131. [PMID: 38644374 PMCID: PMC11033256 DOI: 10.1038/s41598-024-55010-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 02/19/2024] [Indexed: 04/23/2024]  Open
4
Yu Y, Wang X, Qu R, OuYang Z, Guo J, Zhao Y, Huang L. Extraction and analysis of high-quality chloroplast DNA with reduced nuclear DNA for medicinal plants. BMC Biotechnol 2024;24:20. [PMID: 38637734 PMCID: PMC11025248 DOI: 10.1186/s12896-024-00843-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Accepted: 03/15/2024] [Indexed: 04/20/2024]  Open
5
Xue H, Xing Y, Bian C, Hou W, Men W, Zheng H, Yang Y, Ying X, Kang T, Xu L. Comparative analysis of chloroplast genomes of Pulsatilla species reveals evolutionary and taxonomic status of newly discovered endangered species Pulsatilla saxatilis. BMC PLANT BIOLOGY 2024;24:293. [PMID: 38632540 PMCID: PMC11022354 DOI: 10.1186/s12870-024-04940-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2024] [Accepted: 03/22/2024] [Indexed: 04/19/2024]
6
Walker EJL, Pampuch M, Chang N, Cochrane RR, Karas BJ. Design and assembly of the 117-kb Phaeodactylum tricornutum chloroplast genome. PLANT PHYSIOLOGY 2024;194:2217-2228. [PMID: 38114089 PMCID: PMC10980414 DOI: 10.1093/plphys/kiad670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 11/02/2023] [Accepted: 11/27/2023] [Indexed: 12/21/2023]
7
Li B, Wang H, Zhang J, Qiu B, Yang C, Li Y. The complete plastome genome sequence of Cynanchum otophyllum (Asclepiadaceae), a unique medicinal species in China. Mitochondrial DNA B Resour 2024;9:318-321. [PMID: 38476837 PMCID: PMC10930142 DOI: 10.1080/23802359.2023.2290850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 11/29/2023] [Indexed: 03/14/2024]  Open
8
Wang R, Yang Y, Tian H, Yi H, Xu L, Lv Y, Ge J, Zhao Y, Wang L, Zhou S, Wang F. A Scalable and Robust Chloroplast Genotyping Solution: Development and Application of SNP and InDel Markers in the Maize Chloroplast Genome. Genes (Basel) 2024;15:293. [PMID: 38540352 PMCID: PMC10970264 DOI: 10.3390/genes15030293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 02/20/2024] [Accepted: 02/23/2024] [Indexed: 06/14/2024]  Open
9
Zhang T, Chen X, Yan W, Li M, Huang W, Liu Q, Li Y, Guo C, Shu Y. Comparative Analysis of Chloroplast Pan-Genomes and Transcriptomics Reveals Cold Adaptation in Medicago sativa. Int J Mol Sci 2024;25:1776. [PMID: 38339052 PMCID: PMC10855486 DOI: 10.3390/ijms25031776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Revised: 01/23/2024] [Accepted: 01/30/2024] [Indexed: 02/12/2024]  Open
10
Shim D, Jeon SH, Kim JC, Yoon DK. Comparative Phylogenetic Analysis of Ancient Korean Tea "Hadong Cheon-Nyeon Cha (Camellia sinensis var. sinensis)" Using Complete Chloroplast Genome Sequences. Curr Issues Mol Biol 2024;46:1091-1106. [PMID: 38392187 PMCID: PMC10888334 DOI: 10.3390/cimb46020069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 01/20/2024] [Accepted: 01/22/2024] [Indexed: 02/24/2024]  Open
11
Zhou Q, Ding X, Wang H, Farooq Z, Wang L, Yang S. A novel in-situ-process technique constructs whole circular cpDNA library. PLANT METHODS 2024;20:2. [PMID: 38172924 PMCID: PMC10763311 DOI: 10.1186/s13007-023-01126-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Accepted: 12/08/2023] [Indexed: 01/05/2024]
12
Mehmetoğlu E, Kaymaz Y, Ateş D, Kahraman A, Tanyolaç MB. The complete chloroplast genome of Cicer reticulatum and comparative analysis against relative Cicer species. Sci Rep 2023;13:17871. [PMID: 37857674 PMCID: PMC10587350 DOI: 10.1038/s41598-023-44599-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 10/10/2023] [Indexed: 10/21/2023]  Open
13
Kim SC, Ha YH, Park BK, Jang JE, Kang ES, Kim YS, Kimspe TH, Kim HJ. Comparative analysis of the complete chloroplast genome of Papaveraceae to identify rearrangements within the Corydalis chloroplast genome. PLoS One 2023;18:e0289625. [PMID: 37733832 PMCID: PMC10513226 DOI: 10.1371/journal.pone.0289625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Accepted: 07/24/2023] [Indexed: 09/23/2023]  Open
14
Kousar M, Park J. Comparative Analysis of the Chloroplast Genome of Sicyos angulatus with Other Seven Species of Cucurbitaceae Family. Genes (Basel) 2023;14:1776. [PMID: 37761916 PMCID: PMC10531474 DOI: 10.3390/genes14091776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 08/31/2023] [Accepted: 09/06/2023] [Indexed: 09/29/2023]  Open
15
Yoon WS, Kim CK, Kim YK. The First Complete Chloroplast Genome of Campanula carpatica: Genome Characterization and Phylogenetic Diversity. Genes (Basel) 2023;14:1597. [PMID: 37628648 PMCID: PMC10454809 DOI: 10.3390/genes14081597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 07/28/2023] [Accepted: 08/06/2023] [Indexed: 08/27/2023]  Open
16
Ibrahim AA, Alwutayd KM, Safhi FA, Alshegaihi RM, Alqurashi M, Alyamani A, Aloufi S, Alharthi B, Fayad E, Abd El-Moneim D. Characterization and comparative genomic analyses of complete chloroplast genome on Trema orientalis L. GENETIC RESOURCES AND CROP EVOLUTION 2023. [DOI: 10.1007/s10722-023-01678-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 07/06/2023] [Indexed: 09/02/2023]
17
Raiyemo DA, Tranel PJ. Comparative analysis of dioecious Amaranthus plastomes and phylogenomic implications within Amaranthaceae s.s. BMC Ecol Evol 2023;23:15. [PMID: 37149567 PMCID: PMC10164334 DOI: 10.1186/s12862-023-02121-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Accepted: 04/28/2023] [Indexed: 05/08/2023]  Open
18
Christinaki AC, Theelen B, Zania A, Coutinho SDA, Cabañes JF, Boekhout T, Kouvelis VN. Co-evolution of large inverted repeats and G-quadruplex DNA in fungal mitochondria may facilitate mitogenome stability: the case of Malassezia. Sci Rep 2023;13:6308. [PMID: 37072481 PMCID: PMC10113387 DOI: 10.1038/s41598-023-33486-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 04/13/2023] [Indexed: 05/03/2023]  Open
19
Tian R, Aou X, Song B, Li Z, He X, Zhou S. Plastid Phylogenomic Analyses Reveal a Cryptic Species of Ligusticopsis (Apiaceae, Angiosperms). Int J Mol Sci 2023;24:ijms24087419. [PMID: 37108580 PMCID: PMC10138589 DOI: 10.3390/ijms24087419] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 04/06/2023] [Accepted: 04/14/2023] [Indexed: 04/29/2023]  Open
20
Yang Q, Li Y, Cai L, Gan G, Wang P, Li W, Li W, Jiang Y, Li D, Wang M, Xiong C, Chen R, Wang Y. Characteristics, Comparative Analysis, and Phylogenetic Relationships of Chloroplast Genomes of Cultivars and Wild Relatives of Eggplant (Solanum melongena). Curr Issues Mol Biol 2023;45:2832-2846. [PMID: 37185709 PMCID: PMC10136506 DOI: 10.3390/cimb45040185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Revised: 03/22/2023] [Accepted: 03/28/2023] [Indexed: 04/05/2023]  Open
21
Li Q, Chen X, Yang D, Xia P. Genetic relationship of Pleione based on the chloroplast genome. Gene 2023;858:147203. [PMID: 36646186 DOI: 10.1016/j.gene.2023.147203] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 12/26/2022] [Accepted: 01/11/2023] [Indexed: 01/15/2023]
22
Zhang M, Zhang XH, Shi S, Chen BH. Lithocarpusdahuensis (Fagaceae), a new species from Fujian Province based on morphology and genomic data. PHYTOKEYS 2023;222:1-18. [PMID: 37252639 PMCID: PMC10209513 DOI: 10.3897/phytokeys.222.99370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 02/26/2023] [Indexed: 05/31/2023]
23
Hu Y, Sun Y, Zhu QH, Fan L, Li J. Poaceae Chloroplast Genome Sequencing: Great Leap Forward in Recent Ten Years. Curr Genomics 2023;23:369-384. [PMID: 37920556 PMCID: PMC10173419 DOI: 10.2174/1389202924666221201140603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 10/02/2022] [Accepted: 10/19/2022] [Indexed: 12/11/2022]  Open
24
New Insights into Plastid and Mitochondria Evolution in Wild Peas (Pisum L.). DIVERSITY 2023. [DOI: 10.3390/d15020216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
25
Li J, Cullis C. Comparative analysis of 84 chloroplast genomes of Tylosema esculentum reveals two distinct cytotypes. FRONTIERS IN PLANT SCIENCE 2023;13:1025408. [PMID: 36798803 PMCID: PMC9927231 DOI: 10.3389/fpls.2022.1025408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Accepted: 12/21/2022] [Indexed: 06/18/2023]
26
Wang Y, Xu J, Hu B, Dong C, Sun J, Li Z, Ye K, Deng F, Wang L, Aslam M, Lv W, Qin Y, Cheng Y. Assembly, annotation, and comparative analysis of Ipomoea chloroplast genomes provide insights into the parasitic characteristics of Cuscuta species. FRONTIERS IN PLANT SCIENCE 2023;13:1074697. [PMID: 36733590 PMCID: PMC9887335 DOI: 10.3389/fpls.2022.1074697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 12/21/2022] [Indexed: 06/18/2023]
27
Li H, Guo Q, Xu L, Gao H, Liu L, Zhou X. CPJSdraw: analysis and visualization of junction sites of chloroplast genomes. PeerJ 2023;11:e15326. [PMID: 37193025 PMCID: PMC10182761 DOI: 10.7717/peerj.15326] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 04/10/2023] [Indexed: 05/18/2023]  Open
28
Li H, Chen M, Wang Z, Hao Z, Zhao X, Zhu W, Liu L, Guo W. Characterization of the Complete Chloroplast Genome and Phylogenetic Implications of Euonymus microcarpus (Oliv.) Sprague. Genes (Basel) 2022;13:genes13122352. [PMID: 36553619 PMCID: PMC9778254 DOI: 10.3390/genes13122352] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 12/09/2022] [Accepted: 12/12/2022] [Indexed: 12/16/2022]  Open
29
Yang Y, Jia Y, Zhao Y, Wang Y, Zhou T. Comparative chloroplast genomics provides insights into the genealogical relationships of endangered Tetraena mongolica and the chloroplast genome evolution of related Zygophyllaceae species. Front Genet 2022;13:1026919. [PMID: 36568371 PMCID: PMC9773207 DOI: 10.3389/fgene.2022.1026919] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 11/18/2022] [Indexed: 12/13/2022]  Open
30
Lan Z, Shi Y, Yin Q, Gao R, Liu C, Wang W, Tian X, Liu J, Nong Y, Xiang L, Wu L. Comparative and phylogenetic analysis of complete chloroplast genomes from five Artemisia species. FRONTIERS IN PLANT SCIENCE 2022;13:1049209. [PMID: 36479523 PMCID: PMC9720176 DOI: 10.3389/fpls.2022.1049209] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Accepted: 10/26/2022] [Indexed: 06/17/2023]
31
Han F, Qu Y, Chen Y, Xu L, Bi C. Assembly and comparative analysis of the complete mitochondrial genome of Salix wilsonii using PacBio HiFi sequencing. FRONTIERS IN PLANT SCIENCE 2022;13:1031769. [PMID: 36466227 PMCID: PMC9709322 DOI: 10.3389/fpls.2022.1031769] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2022] [Accepted: 10/17/2022] [Indexed: 06/01/2023]
32
Wang Y, Yu J, Chen YK, Wang ZC. Complete Chloroplast Genome Sequence of the Endemic and Endangered Plant Dendropanax oligodontus: Genome Structure, Comparative and Phylogenetic Analysis. Genes (Basel) 2022;13:2028. [PMID: 36360265 PMCID: PMC9690231 DOI: 10.3390/genes13112028] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 10/30/2022] [Accepted: 11/01/2022] [Indexed: 12/24/2023]  Open
33
Ling K, Yi-ning D, Majeed A, Zi-jiang Y, Jun-wen C, Li-lian H, Xian-hong W, Lu-feng L, Zhen-feng Q, Dan Z, Shu-jie G, Rong X, Lin-yan X, Fu X, Yang D, Fu-sheng L. Evaluation of genome size and phylogenetic relationships of the Saccharum complex species. 3 Biotech 2022;12:327. [PMID: 36276474 PMCID: PMC9582063 DOI: 10.1007/s13205-022-03338-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 08/16/2022] [Indexed: 11/29/2022]  Open
34
Zhao Y, Qu D, Ma Y. Characterization of the Chloroplast Genome of Argyranthemum frutescens and a Comparison with Other Species in Anthemideae. Genes (Basel) 2022;13:genes13101720. [PMID: 36292605 PMCID: PMC9602088 DOI: 10.3390/genes13101720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 09/13/2022] [Accepted: 09/22/2022] [Indexed: 11/16/2022]  Open
35
Yang L, Abduraimov O, Tojibaev K, Shomurodov K, Zhang YM, Li WJ. Analysis of complete chloroplast genome sequences and insight into the phylogenetic relationships of Ferula L. BMC Genomics 2022;23:643. [PMID: 36076164 PMCID: PMC9461113 DOI: 10.1186/s12864-022-08868-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Accepted: 08/30/2022] [Indexed: 11/11/2022]  Open
36
Comparative Analysis of Complete Chloroplast Genomes of Nine Species of Litsea (Lauraceae): Hypervariable Regions, Positive Selection, and Phylogenetic Relationships. Genes (Basel) 2022;13:genes13091550. [PMID: 36140718 PMCID: PMC9498446 DOI: 10.3390/genes13091550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 08/22/2022] [Accepted: 08/25/2022] [Indexed: 11/17/2022]  Open
37
Cao DL, Zhang XJ, Xie SQ, Fan SJ, Qu XJ. Application of chloroplast genome in the identification of Traditional Chinese Medicine Viola philippica. BMC Genomics 2022;23:540. [PMID: 35896957 PMCID: PMC9327190 DOI: 10.1186/s12864-022-08727-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Accepted: 06/29/2022] [Indexed: 11/10/2022]  Open
38
Chen S, Wang T, Shu J, Xiang Q, Yang T, Zhang X, Yan Y. Plastid Phylogenomics and Plastomic Diversity of the Extant Lycophytes. Genes (Basel) 2022;13:genes13071280. [PMID: 35886063 PMCID: PMC9316050 DOI: 10.3390/genes13071280] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Revised: 07/12/2022] [Accepted: 07/13/2022] [Indexed: 02/01/2023]  Open
39
Chen C, Xia X, Peng J, Wang D. Comparative Analyses of Six Complete Chloroplast Genomes from the Genus Cupressus and Juniperus (Cupressaceae). Gene 2022;837:146696. [PMID: 35738448 DOI: 10.1016/j.gene.2022.146696] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 06/05/2022] [Accepted: 06/17/2022] [Indexed: 11/26/2022]
40
Zhu S, Liu A, Xie X, Xia M, Chen H. Characterization of the complete chloroplast genome of Wisteriopsis reticulata (Fabaceae): an IRLC legumes. Mitochondrial DNA B Resour 2022;7:1137-1139. [PMID: 35756451 PMCID: PMC9225703 DOI: 10.1080/23802359.2022.2079436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
41
Infrageneric Plastid Genomes of Cotoneaster (Rosaceae): Implications for the Plastome Evolution and Origin of C. wilsonii on Ulleung Island. Genes (Basel) 2022;13:genes13050728. [PMID: 35627113 PMCID: PMC9141645 DOI: 10.3390/genes13050728] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Revised: 04/18/2022] [Accepted: 04/20/2022] [Indexed: 12/31/2022]  Open
42
Comparative analysis of chloroplast genomes reveals phylogenetic relationships and intraspecific variation in the medicinal plant Isodon rubescens. PLoS One 2022;17:e0266546. [PMID: 35385539 PMCID: PMC8985940 DOI: 10.1371/journal.pone.0266546] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2021] [Accepted: 03/22/2022] [Indexed: 11/20/2022]  Open
43
Zhou T, Wang N, Wang Y, Zhang XL, Li BG, Li W, Su JJ, Wang CX, Zhang A, Ma XF, Li ZH. Nucleotide Evolution, Domestication Selection, and Genetic Relationships of Chloroplast Genomes in the Economically Important Crop Genus Gossypium. FRONTIERS IN PLANT SCIENCE 2022;13:873788. [PMID: 35498673 PMCID: PMC9051515 DOI: 10.3389/fpls.2022.873788] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Accepted: 03/24/2022] [Indexed: 06/14/2023]
44
Jiang H, Tian J, Yang J, Dong X, Zhong Z, Mwachala G, Zhang C, Hu G, Wang Q. Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequences. BMC PLANT BIOLOGY 2022;22:177. [PMID: 35387599 PMCID: PMC8985347 DOI: 10.1186/s12870-022-03529-5] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Accepted: 03/14/2022] [Indexed: 05/22/2023]
45
Yen LT, Park J. The complete nucleotide sequence of Viburnum odoratissimum chloroplast genome. Mitochondrial DNA B Resour 2022;7:635-636. [PMID: 35434364 PMCID: PMC9009917 DOI: 10.1080/23802359.2020.1749151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
46
Yu J, Xia M, Wang Y, Chi X, Xu H, Chen S, Zhang F. Short and long reads chloroplast genome assemblies and phylogenomics of Artemisia tangutica (Asteraceae). Biologia (Bratisl) 2022. [DOI: 10.1007/s11756-021-00951-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
47
Guo X, Wang Z, Cai D, Song L, Bai J. The chloroplast genome sequence and phylogenetic analysis of Apocynum venetum L. PLoS One 2022;17:e0261710. [PMID: 35271574 PMCID: PMC8912179 DOI: 10.1371/journal.pone.0261710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2021] [Accepted: 12/08/2021] [Indexed: 11/26/2022]  Open
48
Yen LT, Park J. The complete chloroplast genome of Desmodium styracifolium. Mitochondrial DNA B Resour 2022;7:513-514. [PMID: 35342799 PMCID: PMC8942485 DOI: 10.1080/23802359.2020.1778564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]  Open
49
Moghaddam M, Ohta A, Shimizu M, Terauchi R, Kazempour-Osaloo S. The complete chloroplast genome of Onobrychis gaubae (Fabaceae-Papilionoideae): comparative analysis with related IR-lacking clade species. BMC PLANT BIOLOGY 2022;22:75. [PMID: 35183127 PMCID: PMC8858513 DOI: 10.1186/s12870-022-03465-4] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Accepted: 02/14/2022] [Indexed: 05/24/2023]
50
The Complete Chloroplast Genome of Carya cathayensis and Phylogenetic Analysis. Genes (Basel) 2022;13:genes13020369. [PMID: 35205413 PMCID: PMC8871582 DOI: 10.3390/genes13020369] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Revised: 02/14/2022] [Accepted: 02/14/2022] [Indexed: 02/01/2023]  Open
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