1
|
Al Farraj DA, Hadibarata T, Yuniarto A, Alkufeidy RM, Alshammari MK, Syafiuddin A. Exploring the potential of halotolerant bacteria for biodegradation of polycyclic aromatic hydrocarbon. Bioprocess Biosyst Eng 2020; 43:2305-2314. [DOI: 10.1007/s00449-020-02415-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2020] [Accepted: 07/22/2020] [Indexed: 12/27/2022]
|
2
|
Cui Y, Li D, Morisseau C, Dong JX, Yang J, Wan D, Rossotti MA, Gee SJ, González-Sapienza GG, Hammock BD. Heavy chain single-domain antibodies to detect native human soluble epoxide hydrolase. Anal Bioanal Chem 2015; 407:7275-83. [PMID: 26229025 DOI: 10.1007/s00216-015-8889-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Revised: 06/09/2015] [Accepted: 06/29/2015] [Indexed: 12/17/2022]
Abstract
The soluble epoxide hydrolase (sEH) is a potential pharmacological target for treating hypertension, vascular inflammation, pain, cancer, and other diseases. However, there is not a simple, inexpensive, and reliable method to estimate levels of active sEH in tissues. Toward developing such an assay, a polyclonal variable domain of heavy chain antibody (VHH) sandwich immunoassay was developed. Ten VHHs, which are highly selective for native human sEH, were isolated from a phage-displayed library. The ten VHHs have no significant cross-reactivity with human microsomal epoxide hydrolase, rat and mouse sEH, and denatured human sEH. There is a high correlation between protein levels of the sEH determined by the enzyme-linked immunosorbent assay (ELISA) and the catalytic activity of the enzyme in S9 fractions of human tissues (liver, kidney, and lung). The VHH-based ELISA appears to be a new reliable method for monitoring the sEH and may be useful as a diagnostic tool for diseases influenced by sEH. This study also demonstrates the broad utility of VHH in biochemical and pharmacological research.
Collapse
Affiliation(s)
- Yongliang Cui
- Department of Entomology and Nematology, University of California, Davis, Davis, CA, 95616, USA
- UCD Comprehensive Cancer Center, University of California, Davis, Davis, CA, 95616, USA
| | - Dongyang Li
- Department of Entomology and Nematology, University of California, Davis, Davis, CA, 95616, USA
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, Zhejiang, 310058, China
- UCD Comprehensive Cancer Center, University of California, Davis, Davis, CA, 95616, USA
| | - Christophe Morisseau
- Department of Entomology and Nematology, University of California, Davis, Davis, CA, 95616, USA
- UCD Comprehensive Cancer Center, University of California, Davis, Davis, CA, 95616, USA
| | - Jie-Xian Dong
- Department of Entomology and Nematology, University of California, Davis, Davis, CA, 95616, USA
- UCD Comprehensive Cancer Center, University of California, Davis, Davis, CA, 95616, USA
| | - Jun Yang
- Department of Entomology and Nematology, University of California, Davis, Davis, CA, 95616, USA
- UCD Comprehensive Cancer Center, University of California, Davis, Davis, CA, 95616, USA
| | - Debin Wan
- Department of Entomology and Nematology, University of California, Davis, Davis, CA, 95616, USA
- UCD Comprehensive Cancer Center, University of California, Davis, Davis, CA, 95616, USA
| | - Martín A Rossotti
- Cátedra de Inmunología, Facultad de Química, Instituto de Higiene, UDELAR Av. A. Navarro 3051, Piso 2, Montevideo, 11600, Uruguay
| | - Shirley J Gee
- Department of Entomology and Nematology, University of California, Davis, Davis, CA, 95616, USA
- UCD Comprehensive Cancer Center, University of California, Davis, Davis, CA, 95616, USA
| | - Gualberto G González-Sapienza
- Cátedra de Inmunología, Facultad de Química, Instituto de Higiene, UDELAR Av. A. Navarro 3051, Piso 2, Montevideo, 11600, Uruguay
| | - Bruce D Hammock
- Department of Entomology and Nematology, University of California, Davis, Davis, CA, 95616, USA.
- UCD Comprehensive Cancer Center, University of California, Davis, Davis, CA, 95616, USA.
| |
Collapse
|
3
|
Kiruthiga PV, Karthikeyan K, Archunan G, Pandian SK, Devi KP. Silymarin prevents benzo(a)pyrene-induced toxicity in Wistar rats by modulating xenobiotic-metabolizing enzymes. Toxicol Ind Health 2013; 31:523-41. [DOI: 10.1177/0748233713475524] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Benzo(a)pyrene (B(a)P), which is commonly used as an indicator species for polycyclic aromatic hydrocarbon (PAH) contamination, has a large number of hazardous consequences on human health. In the presence of the enzyme cytochrome-P-450 1A1 (CYP1A1), it undergoes metabolic activation to form reactive intermediates that are capable of inducing mutagenic, cytotoxic, teratogenic and carcinogenic effects in various species and tissues. Research within the last few years has shown that flavonoids exhibit chemopreventive effect against these toxins. In the present study, the protective effect of silymarin (a flavonoid) against B(a)P-induced toxicity was monitored in Wistar rats by evaluating the levels of hepatic phase I (CYP1A1), phase II enzymes (glutathione-S-transferase, epoxide hydroxylases, uridinediphosphate glucuronosyltransferases, NAD(P)H: quinone oxidoreductase 1, sulfotransferases), cellular antioxidant enzyme heme oxygenase and total glutathione. The results reveal that silymarin possesses substantial protective effect against B(a)P-induced damages by inhibiting phase I detoxification enzyme CYP1A1 and modulating phase II conjugating enzymes, which were confirmed by histopathological analysis. Overall, the inhibition of CYP1A1 and the modulation of phase II enzymes may provide, in part, the molecular basis for the effect of silymarin against B(a)P.
Collapse
Affiliation(s)
- PV Kiruthiga
- Department of Biotechnology, Alagappa University, Karaikudi, Tamil Nadu, India
| | - K Karthikeyan
- Centre for Pheromone Technology, Department of Animal Science, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India
| | - G Archunan
- Centre for Pheromone Technology, Department of Animal Science, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India
| | - S Karutha Pandian
- Department of Biotechnology, Alagappa University, Karaikudi, Tamil Nadu, India
| | - K Pandima Devi
- Department of Biotechnology, Alagappa University, Karaikudi, Tamil Nadu, India
| |
Collapse
|
4
|
Gómez-Bombarelli R, González-Pérez M, Calle E, Casado J. Potential of the NBP Method for the Study of Alkylation Mechanisms: NBP as a DNA-Model. Chem Res Toxicol 2012; 25:1176-91. [DOI: 10.1021/tx300065v] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Rafael Gómez-Bombarelli
- Departamento de Química Física, Facultad de
Ciencias Químicas, Universidad de Salamanca, Plaza de los Caídos, 1-5, E-37008 Salamanca, Spain
| | - Marina González-Pérez
- Departamento de Química Física, Facultad de
Ciencias Químicas, Universidad de Salamanca, Plaza de los Caídos, 1-5, E-37008 Salamanca, Spain
| | - Emilio Calle
- Departamento de Química Física, Facultad de
Ciencias Químicas, Universidad de Salamanca, Plaza de los Caídos, 1-5, E-37008 Salamanca, Spain
| | - Julio Casado
- Departamento de Química Física, Facultad de
Ciencias Químicas, Universidad de Salamanca, Plaza de los Caídos, 1-5, E-37008 Salamanca, Spain
| |
Collapse
|
5
|
Shen W, Zhang J, Mao G, Jiang K, Zhu Q. A Long-Wavelength, Fluorogenic Probe for Epoxide Hydrolase: 7-(2-(Oxiran-2-yl)ethoxy) Resorufin. Biol Pharm Bull 2009; 32:1496-9. [DOI: 10.1248/bpb.32.1496] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- Wei Shen
- Department of General Surgery, Jinhua Central Hospital
| | - Jiaming Zhang
- Department of General Surgery, Jinhua Central Hospital
| | - Genjun Mao
- Department of General Surgery, Jinhua Central Hospital
| | - Keyi Jiang
- Institute of Bioengineering, Zhejiang University of Technology (Chaohui Campus)
| | - Qing Zhu
- Institute of Bioengineering, Zhejiang University of Technology (Chaohui Campus)
| |
Collapse
|
6
|
Woo JH, Kang JH, Kang SG, Hwang YO, Kim SJ. Cloning and characterization of an epoxide hydrolase from Novosphingobium aromaticivorans. Appl Microbiol Biotechnol 2008; 82:873-81. [PMID: 19083233 DOI: 10.1007/s00253-008-1791-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2008] [Revised: 11/06/2008] [Accepted: 11/10/2008] [Indexed: 10/21/2022]
Abstract
A gene encoding a putative epoxide hydrolase (EHase) was identified by analyzing an open reading frame of the genome sequence of Novosphingobium aromaticivorans, retaining the conserved catalytic residues such as the catalytic triad (Asp177, Glu328, and His355) and the oxyanion hole. The enantioselective EHase gene (neh) was cloned, and the recombinant EHase could be purified to apparent homogeneity by one step of metal affinity chromatography and further characterized. The purified N. aromaticivorans enantioselective epoxide hydrolase (NEH) showed enantioselective hydrolysis toward styrene oxide, glycidyl phenyl ether, epoxybutane, and epichlorohydrin. The optimal EHase activity toward styrene oxide occurred at pH 6.5 and 45 degrees C. The purified NEH could preferentially hydrolyze (R)-styrene oxide with enantiomeric excess of more than 99% and 11.7% yield after 20-min incubation at an optimal condition. The enantioselective hydrolysis of styrene oxide was also confirmed by the analysis of the vicinal diol, 1-phenyl-1,2-ethanediol. The hydrolyzing rates of the purified NEH toward epoxide substrates were not affected by as high as 100 mM racemic styrene oxide.
Collapse
Affiliation(s)
- Jung-Hee Woo
- Marine Biotechnology Research Centre, Korea Ocean Research & Development Institute, P.O. Box 29, Ansan, 425-600, South Korea
| | | | | | | | | |
Collapse
|
7
|
Hwang YO, Kang SG, Woo JH, Kwon KK, Sato T, Lee EY, Han MS, Kim SJ. Screening enantioselective epoxide hydrolase activities from marine microorganisms: detection of activities in Erythrobacter spp. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2008; 10:366-373. [PMID: 18214609 DOI: 10.1007/s10126-007-9070-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2007] [Revised: 11/02/2007] [Accepted: 11/15/2007] [Indexed: 05/25/2023]
Abstract
To develop an enantioselective epoxide hydrolase (EHase) from marine microorganisms, marine samples were collected from a variety of marine environments. Strains isolated by the capability of living on styrene oxide (SO) were screened for retaining enantioselective EHase activities toward SO by combining spectrophotometric, GC, and HPLC analysis. Consequently, one strain, JCS358, was selected, and the sequence analysis of 16S rRNA gene showed that the strain belonged to Erythrobacter cluster. Twelve additional Erythrobacter strains from this study or acquired from culture collections were thereby tested for displaying EHase activities, and most of tested strains showed enantioselective hydrolysis toward SO and glycidyl phenyl ether. Kinetic resolution of racemic SO using whole cell of Erythrobacter sp. JCS358 was performed. Enantiopure (S)-SO could be obtained with an enantiomeric excess (ee) higher than 99% after 15 h incubation. The determination of 1-phenyl-1,2-ethanediol configuration derived from racemic SO confirmed the enantioselective hydrolyzing activity of Erythrobacter sp. JCS358.
Collapse
Affiliation(s)
- Young-Ok Hwang
- Marine Biotechnology Research Center, Korea Ocean Research and Development Institute, Ansan, South Korea
| | | | | | | | | | | | | | | |
Collapse
|
8
|
Liu Y, Wu S, Wang J, Yang L, Sun W. Cloning, expression, purification, and characterization of a novel epoxide hydrolase from Aspergillus niger SQ-6. Protein Expr Purif 2007; 53:239-46. [PMID: 17317214 DOI: 10.1016/j.pep.2006.06.017] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2006] [Revised: 06/19/2006] [Accepted: 06/19/2006] [Indexed: 11/27/2022]
Abstract
A novel epoxide hydrolase from Aspergillus niger SQ-6 has now been cloned by inverse PCR. Its gene shows eight exons including a non-coding exon at its 5'-terminal (GenBank Accession No. AY966486). Phylogenetic analysis using deduced amino acid sequence (395 aa) confirms it as an epoxide hydrolase and shares 58.3% identity with that of A. niger LCP521 (GenBank Accession No. AF238460). The predicted catalytic triad is composed of Asp(191), His(369) and Glu(343). Active recombinant epoxide hydrolase has been successfully expressed in Escherichia coli as protein fusions with a poly-His tail. Scale-up fermentation can yield 2.5g/L of recombinant protein. The electrophoretic pure recombinant protein, which shows similar characterization as natural enzyme purified from A. niger SQ-6, can be easily purified by Ni(2+)-chelated affinity and gel-filtration chromatography. Optimal pH and temperature for purified enzyme are pH 7.5 and 37 degrees C, respectively. The K(m), k(cat) and maximal velocity (V(max)) for p-nitrostyrene oxide are determined to be 1.02mM, 172s(-1) and 231micromol min(-1)mg(-1), respectively. The enzyme can be inhibited by oxidant (H(2)O(2)), solvent (Tetrahydrofuran) and several metal ions including Hg(2+), Fe(2+) and Co(2+). This (R)-stereospecific epoxide hydrolase exhibits high enantioselectivity (enantiomeric excess value, 99%) for the less hindered carbon atom of epoxide. It may be an industrial biocatalyst for the preparation of enantiopure epoxides or vicinal diols.
Collapse
Affiliation(s)
- Yanbin Liu
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, China.
| | | | | | | | | |
Collapse
|
9
|
Woo JH, Hwang YO, Kang SG, Lee HS, Cho JC, Kim SJ. Cloning and characterization of three epoxide hydrolases from a marine bacterium, Erythrobacter litoralis HTCC2594. Appl Microbiol Biotechnol 2007; 76:365-75. [PMID: 17541582 DOI: 10.1007/s00253-007-1011-z] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2007] [Revised: 04/19/2007] [Accepted: 04/23/2007] [Indexed: 11/27/2022]
Abstract
Previously, we reported that ten strains belonging to Erythrobacter showed epoxide hydrolase (EHase) activities toward various epoxide substrates. Three genes encoding putative EHases were identified by analyzing open reading frames of Erythrobacter litoralis HTCC2594. Despite low similarities to reported EHases, the phylogenetic analysis of the three genes showed that eeh1 was similar to microsomal EHase, while eeh2 and eeh3 could be grouped with soluble EHases. The three EHase genes were cloned, and the recombinant proteins (rEEH1, rEEH2, and rEEH3) were purified. The functionality of purified proteins was proved by hydrolytic activities toward styrene oxide. EEH1 preferentially hydrolyzed (R)-styrene oxide, whereas EEH3 preferred to hydrolyze (S)-styrene oxide, representing enantioselective hydrolysis of styrene oxide. On the other hand, EEH2 could hydrolyze (R)- and (S)-styrene oxide at an equal rate. The optimal pH and temperature for the EHases occurred largely at neutral pHs and 40-55 degrees C. The substrate selectivity of rEEH1, rEEH2, and rEEH3 toward various epoxide substrates were also investigated. This is the first representation that a strict marine microorganism possessed three EHases with different enantioselectivity toward styrene oxide.
Collapse
Affiliation(s)
- Jung-Hee Woo
- Marine Biotechnology Research Centre, Korea Ocean Research and Development Institute, Ansan, PO Box 29, 425-600, South Korea
| | | | | | | | | | | |
Collapse
|
10
|
Cedrone F, Bhatnagar T, Baratti JC. Colorimetric assays for quantitative analysis and screening of epoxide hydrolase activity. Biotechnol Lett 2006; 27:1921-7. [PMID: 16328991 DOI: 10.1007/s10529-005-3904-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2005] [Accepted: 10/03/2005] [Indexed: 10/25/2022]
Abstract
Focusing on directed evolution to tailor enzymes as usable biocatalysts for fine chemistry, we have studied in detail several colorimetric assays for quantitative analysis of epoxide hydrolase (EH) activity. In particular, two assays have been optimized to characterize variants issued from the directed evolution of the EH from Aspergillus niger. Assays described in this paper are sufficiently reliable for quantitative screening of EH activity in microtiter plates and are low cost alternatives to GC or MS analysis. Moreover, they are usable for various epoxides and not restricted to a type of substrate, such as those amenable to assay by UV absorbancy. They can be used to assay EH activity on any epoxide and to directly assay enantioselectivity when both (R) and (S) substrates are available. The advantages and drawbacks of these two methods to assay EH activity of a large number of natural samples are summarized.
Collapse
Affiliation(s)
- F Cedrone
- Faculté des Sciences de Luminy, Université de la Méditerranée UMR CNRS 6111, 163 avenue de Luminy - case 901, 13288 Marseille cedex 9, France
| | | | | |
Collapse
|
11
|
Liu Y, Sha Q, Wu S, Wang J, Yang L, Sun W. Enzymatic resolution of racemic phenyloxirane by a novel epoxide hydrolase from Aspergillus niger SQ-6 and its fed-batch fermentation. J Ind Microbiol Biotechnol 2005; 33:274-82. [PMID: 16320035 DOI: 10.1007/s10295-005-0062-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2005] [Accepted: 10/27/2005] [Indexed: 10/25/2022]
Abstract
A microorganism with the ability to catalyze the resolution of racemic phenyloxirane was isolated and identified as Aspergillus niger SQ-6. Chiral capillary electrophoresis was successfully applied to separate both phenyloxirane and phenylethanediol. The epoxide hydrolase (EH) involved in this resolution process was (R)-stereospecific and constitutively expressed. When whole cells were used during the biotransformation process, the optimum temperature and pH for stereospecific vicinal diol production were 35 degrees C and 7.0, respectively. After a 24-h conversion, the enantiomer excess of (R)-phenylethanediol produced was found to be >99%, with a conversion rate of 56%. In fed-batch fermentations at 30 degrees C for 44 h, glycerol (20 g L(-1)) and corn steep liquor (CSL) (30 g L(-1)) were chosen as the best initial carbon and nitrogen sources, and EH production was markedly improved by pulsed feeding of sucrose (2 g L(-1) h(-1)) and continuous feeding of CSL (1 g L(-1) h(-1)) at a fermentation time of 28 h. After optimization, the maximum dry cell weight achieved was 24.5+/-0.8 g L(-1); maximum EH production was 351.2+/-13.1 U L(-1) with a specific activity of 14.3+/-0.5 U g(-1). Partially purified EH exhibited a temperature optimum at 37 degrees C and pH optimum at 7.5 in 0.1 M phosphate buffer. This study presents the first evidence for the existence of a predicted epoxide racemase, which might be important in the synthesis of epoxide intermediates.
Collapse
Affiliation(s)
- Yanbin Liu
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beiyitiao 13, Zhongguancun, Haidian, Beijing, 100080, People's Republic of China
| | | | | | | | | | | |
Collapse
|
12
|
Doderer K, Lutz-Wahl S, Hauer B, Schmid RD. Spectrophotometric assay for epoxide hydrolase activity toward any epoxide. Anal Biochem 2003; 321:131-4. [PMID: 12963064 DOI: 10.1016/s0003-2697(03)00399-3] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Kai Doderer
- Institute for Technical Biochemistry, University of Stuttgart, Allmandring 31, D-70569 Stuttgart, Germany
| | | | | | | |
Collapse
|