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Schiavolin L, Deneubourg G, Steinmetz J, Smeesters PR, Botteaux A. Group A Streptococcus adaptation to diverse niches: lessons from transcriptomic studies. Crit Rev Microbiol 2024; 50:241-265. [PMID: 38140809 DOI: 10.1080/1040841x.2023.2294905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 12/10/2023] [Indexed: 12/24/2023]
Abstract
Group A Streptococcus (GAS) is a major human pathogen, causing diseases ranging from mild superficial infections of the skin and pharyngeal epithelium to severe systemic and invasive diseases. Moreover, post infection auto-immune sequelae arise by a yet not fully understood mechanism. The ability of GAS to cause a wide variety of infections is linked to the expression of a large set of virulence factors and their transcriptional regulation in response to various physiological environments. The use of transcriptomics, among others -omics technologies, in addition to traditional molecular methods, has led to a better understanding of GAS pathogenesis and host adaptation mechanisms. This review focusing on bacterial transcriptomic provides new insight into gene-expression patterns in vitro, ex vivo and in vivo with an emphasis on metabolic shifts, virulence genes expression and transcriptional regulators role.
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Affiliation(s)
- Lionel Schiavolin
- Microbiology Laboratory, European Plotkin Institute of Vaccinology, Université libre de Bruxelles, Brussels, Belgium
| | - Geoffrey Deneubourg
- Microbiology Laboratory, European Plotkin Institute of Vaccinology, Université libre de Bruxelles, Brussels, Belgium
| | - Jenny Steinmetz
- Microbiology Laboratory, European Plotkin Institute of Vaccinology, Université libre de Bruxelles, Brussels, Belgium
| | - Pierre R Smeesters
- Microbiology Laboratory, European Plotkin Institute of Vaccinology, Université libre de Bruxelles, Brussels, Belgium
- Department of Paediatrics, Brussels University Hospital, Academic Children Hospital Queen Fabiola, Université libre de Bruxelles, Brussels, Belgium
| | - Anne Botteaux
- Microbiology Laboratory, European Plotkin Institute of Vaccinology, Université libre de Bruxelles, Brussels, Belgium
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Eyk NV, Allen L, Giesbrecht E, Jamieson MA, Kives S, Morris M, Ornstein M, Fleming N. Pediatric vulvovaginal disorders: a diagnostic approach and review of the literature. JOURNAL OF OBSTETRICS AND GYNAECOLOGY CANADA 2010; 31:850-862. [PMID: 19941710 DOI: 10.1016/s1701-2163(16)34304-3] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Vulvovaginal complaints in the prepubertal child are a common reason for referral to the health care provider. The Cochrane Library and Medline databases were searched for articles published in English from 1980 to December 2004 relating to vulvovaginal conditions in girls. The following search terms were used: vulvovaginitis, prepubertal, pediatric, lichen sclerosis, labial fusion, labial adhesion, genital ulcers, urethral prolapse, psoriasis, and straddle injuries. The objectives of this article are to review the normal vulvovaginal anatomy, describe how to perform an age-appropriate examination, and discuss common vulvovaginal disorders and their management in young girls.
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Affiliation(s)
- Nancy Van Eyk
- Department of Obstetrics and Gynaecology, IWK Health Centre, Dalhousie University, Halifax NS
| | - Lisa Allen
- Division of Paediatric Gynaecology, Hospital for Sick Children, University of Toronto, Toronto ON
| | - Ellen Giesbrecht
- Department of Obstetrics and Gynaecology, BC Women's Hospital, University of BC, Vancouver BC
| | - Mary Anne Jamieson
- Department of Obstetrics and Gynaecology, Kingston General Hospital, Queen's University, Kingston ON
| | - Sari Kives
- Division of Paediatric Gynaecology, Hospital for Sick Children, University of Toronto, Toronto ON
| | - Margaret Morris
- Department of Obstetrics and Gynecology, Health Sciences Centre, University of Manitoba, Winnipeg MB
| | - Melanie Ornstein
- Division of Paediatric Gynaecology, Hospital for Sick Children, University of Toronto, Toronto ON
| | - Nathalie Fleming
- Division of Pediatric and Adolescent Gynecology, Children's Hospital of Eastern Ontario, University of Ottawa, Ottawa ON
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Green NM, Beres SB, Graviss EA, Allison JE, McGeer AJ, Vuopio-Varkila J, LeFebvre RB, Musser JM. Genetic diversity among type emm28 group A Streptococcus strains causing invasive infections and pharyngitis. J Clin Microbiol 2005; 43:4083-91. [PMID: 16081955 PMCID: PMC1233891 DOI: 10.1128/jcm.43.8.4083-4091.2005] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Genome sequencing of group A Streptococcus (GAS) has revealed that prophages account for the vast majority of gene content differences between strains. Serotype M28 strains are a leading cause of pharyngitis and invasive infections, but little is known about genetic diversity present in natural populations of these organisms. To study this issue, population-based samples of 568 strains from Ontario, Canada; Finland; and Houston, Texas, were analyzed. Special attention was given to analysis of variation in prophage-encoded virulence gene content by a PCR-based method. Thirty and 29 distinct prophage-encoded virulence gene profiles were identified among pharyngitis and invasive infection isolates. Thirteen profiles, representing the majority of the strains, were shared between these two classes of isolates. Significant differences were observed in the frequency of occurrence of certain prophage toxin gene profiles and infection type. M28 strains are highly diverse in prophage-encoded virulence gene content and integration site, supporting the key concept that prophages are critical contributors to GAS genetic diversity and population biology. Nucleotide sequence variation in the emm gene (encodes M protein) was also examined. Only three allelic variants were identified in the hypervariable portion of the emm28 gene. All but one strain had the same inferred amino acid sequence in the first 100 amino acids of the mature M28 protein. In contrast, size differences in the emm28 gene and inferred protein due to variable numbers of C-terminal repeats were common. The presence of macrolide resistance genes (mefA, ermB, and ermTR) was analyzed by PCR, and less than 2% of the strains were positive.
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Affiliation(s)
- Nicole M. Green
- Center for Human Bacterial Pathogenesis Research, Department of Pathology, Baylor College of Medicine, Houston, Texas 77030, Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana 59840, Department of Pathology, Microbiology, and Immunology, University of California—Davis, Davis, California 95616, Pediatric Medical Group, Houston, Texas 77098, Mount Sinai Hospital, Department of Microbiology, University of Toronto, Toronto, Ontario M5G 1X5, Canada, National Public Health Institute, Helsinki, Finland
| | - Stephen B. Beres
- Center for Human Bacterial Pathogenesis Research, Department of Pathology, Baylor College of Medicine, Houston, Texas 77030, Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana 59840, Department of Pathology, Microbiology, and Immunology, University of California—Davis, Davis, California 95616, Pediatric Medical Group, Houston, Texas 77098, Mount Sinai Hospital, Department of Microbiology, University of Toronto, Toronto, Ontario M5G 1X5, Canada, National Public Health Institute, Helsinki, Finland
| | - Edward A. Graviss
- Center for Human Bacterial Pathogenesis Research, Department of Pathology, Baylor College of Medicine, Houston, Texas 77030, Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana 59840, Department of Pathology, Microbiology, and Immunology, University of California—Davis, Davis, California 95616, Pediatric Medical Group, Houston, Texas 77098, Mount Sinai Hospital, Department of Microbiology, University of Toronto, Toronto, Ontario M5G 1X5, Canada, National Public Health Institute, Helsinki, Finland
| | - James E. Allison
- Center for Human Bacterial Pathogenesis Research, Department of Pathology, Baylor College of Medicine, Houston, Texas 77030, Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana 59840, Department of Pathology, Microbiology, and Immunology, University of California—Davis, Davis, California 95616, Pediatric Medical Group, Houston, Texas 77098, Mount Sinai Hospital, Department of Microbiology, University of Toronto, Toronto, Ontario M5G 1X5, Canada, National Public Health Institute, Helsinki, Finland
| | - Allison J. McGeer
- Center for Human Bacterial Pathogenesis Research, Department of Pathology, Baylor College of Medicine, Houston, Texas 77030, Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana 59840, Department of Pathology, Microbiology, and Immunology, University of California—Davis, Davis, California 95616, Pediatric Medical Group, Houston, Texas 77098, Mount Sinai Hospital, Department of Microbiology, University of Toronto, Toronto, Ontario M5G 1X5, Canada, National Public Health Institute, Helsinki, Finland
| | - Jaana Vuopio-Varkila
- Center for Human Bacterial Pathogenesis Research, Department of Pathology, Baylor College of Medicine, Houston, Texas 77030, Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana 59840, Department of Pathology, Microbiology, and Immunology, University of California—Davis, Davis, California 95616, Pediatric Medical Group, Houston, Texas 77098, Mount Sinai Hospital, Department of Microbiology, University of Toronto, Toronto, Ontario M5G 1X5, Canada, National Public Health Institute, Helsinki, Finland
| | - Rance B. LeFebvre
- Center for Human Bacterial Pathogenesis Research, Department of Pathology, Baylor College of Medicine, Houston, Texas 77030, Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana 59840, Department of Pathology, Microbiology, and Immunology, University of California—Davis, Davis, California 95616, Pediatric Medical Group, Houston, Texas 77098, Mount Sinai Hospital, Department of Microbiology, University of Toronto, Toronto, Ontario M5G 1X5, Canada, National Public Health Institute, Helsinki, Finland
| | - James M. Musser
- Center for Human Bacterial Pathogenesis Research, Department of Pathology, Baylor College of Medicine, Houston, Texas 77030, Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana 59840, Department of Pathology, Microbiology, and Immunology, University of California—Davis, Davis, California 95616, Pediatric Medical Group, Houston, Texas 77098, Mount Sinai Hospital, Department of Microbiology, University of Toronto, Toronto, Ontario M5G 1X5, Canada, National Public Health Institute, Helsinki, Finland
- Corresponding author. Mailing address: Department of Pathology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030. Phone: (713) 798-3823. Fax: (713) 798-4595. E-mail:
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