1
|
Kundu S, Kamalakannan M, Kim AR, Hegde VD, Banerjee D, Jung WK, Kim YM, Kim HW. Morphology and Mitochondrial Lineage Investigations Corroborate the Systematic Status and Pliocene Colonization of Suncus niger (Mammalia: Eulipotyphla) in the Western Ghats Biodiversity Hotspot of India. Genes (Basel) 2023; 14:1493. [PMID: 37510398 PMCID: PMC10379166 DOI: 10.3390/genes14071493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Revised: 07/17/2023] [Accepted: 07/21/2023] [Indexed: 07/30/2023] Open
Abstract
The Indian highland shrew, Suncus niger (Horsfield, 1851), is the least studied soricid species from its original range distribution in Southern India, with several systematics conundrums. Following its discovery in 1851, the species was synonymized with Suncus montanus (Kelaart, 1850) (endemic to Sri Lanka) and subsequently identified as a separate Indian population. However, the systematic status of S. niger from topotype specimens in Southern India has yet to be determined through an integrated approach. Both taxonomy and mitochondrial genetic data (Cytochrome b and 16S ribosomal RNA) were used to re-examine the systematics of S. niger. The mtCytb gene clearly distinguished topotypic S. niger from other Suncus species, with high genetic divergences varying from 8.49% to 26.29%. Further, the Bayesian and maximum likelihood topologies clearly segregated S. niger from other congeners and corroborated the sister relationship with S. stoliczkanus with expected divergence in the late Pliocene (2.62 MYA). The TimeTree analysis also exhibits a strong matrilineal affinity of S. dayi (endemic to India) toward the African species. The current study hypothesizes that the ancestor of the soricids evolved in Africa and that genetic lineages were subsequently shifted by plate tectonic events that subsequently colonized different continents as distinct species during the late Miocene (Tortonian) to the Holocene era. In addition to the new range expansion and elevation records of S. niger in the Central Western Ghats, we propose that additional sampling across its distribution, as well as the use of multiple genetic markers, may be useful in determining the genetic diversity and population structure of this endemic species. The present study also recommends that more molecular data on the Soricomorphs lineages, and estimates of their divergence times, will shed light on the evolution of these small mammals on Earth.
Collapse
Affiliation(s)
- Shantanu Kundu
- Department of Marine Biology, Pukyong National University, Busan 48513, Republic of Korea
| | - Manokaran Kamalakannan
- Mammal and Osteology Section, Zoological Survey of India, M Block, New Alipore, Kolkata 700053, India
- Western Ghat Regional Centre, Zoological Survey of India, Kozhikode 673006, India
| | - Ah Ran Kim
- Research Center for Marine Integrated Bionics Technology, Pukyong National University, Busan 48513, Republic of Korea
| | - Vishwanath D Hegde
- Mammal and Osteology Section, Zoological Survey of India, M Block, New Alipore, Kolkata 700053, India
| | - Dhriti Banerjee
- Mammal and Osteology Section, Zoological Survey of India, M Block, New Alipore, Kolkata 700053, India
- Western Ghat Regional Centre, Zoological Survey of India, Kozhikode 673006, India
| | - Won-Kyo Jung
- Research Center for Marine Integrated Bionics Technology, Pukyong National University, Busan 48513, Republic of Korea
- Marine Integrated Biomedical Technology Center, National Key Research Institutes in Universities, Pukyong National University, Busan 48513, Republic of Korea
| | - Young-Mog Kim
- Research Center for Marine Integrated Bionics Technology, Pukyong National University, Busan 48513, Republic of Korea
- Marine Integrated Biomedical Technology Center, National Key Research Institutes in Universities, Pukyong National University, Busan 48513, Republic of Korea
| | - Hyun-Woo Kim
- Department of Marine Biology, Pukyong National University, Busan 48513, Republic of Korea
- Research Center for Marine Integrated Bionics Technology, Pukyong National University, Busan 48513, Republic of Korea
- Marine Integrated Biomedical Technology Center, National Key Research Institutes in Universities, Pukyong National University, Busan 48513, Republic of Korea
| |
Collapse
|
2
|
Mayamba A, Byamungu RM, Broecke BV, Leirs H, Hieronimo P, Nakiyemba A, Isabirye M, Kifumba D, Kimaro DN, Mdangi ME, Mulungu LS. Factors influencing the distribution and abundance of small rodent pest species in agricultural landscapes in Eastern Uganda. JOURNAL OF VERTEBRATE BIOLOGY 2020. [DOI: 10.25225/jvb.20002] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Alex Mayamba
- Faculty of Natural Resources and Environment, Busitema University, Tororo, Uganda; e-mail: , , ,
| | - Robert M. Byamungu
- Department of Wildlife and Management, Sokoine University of Agriculture, Tanzania; e-mail: ,
| | - Bram Vanden Broecke
- Evolutionary Ecology Group, University of Antwerp, 2610 Wilrijk, Belgium; e-mail: ,
| | - Herwig Leirs
- Evolutionary Ecology Group, University of Antwerp, 2610 Wilrijk, Belgium; e-mail: ,
| | - Proches Hieronimo
- Department of Engineering Sciences and Technology, Sokoine University of Agriculture, Morogoro, Tanzania; e-mail: ,
| | - Alice Nakiyemba
- Faculty of Natural Resources and Environment, Busitema University, Tororo, Uganda; e-mail: , , ,
| | - Moses Isabirye
- Faculty of Natural Resources and Environment, Busitema University, Tororo, Uganda; e-mail: , , ,
| | - David Kifumba
- Faculty of Natural Resources and Environment, Busitema University, Tororo, Uganda; e-mail: , , ,
| | - Didas N. Kimaro
- Department of Engineering Sciences and Technology, Sokoine University of Agriculture, Morogoro, Tanzania; e-mail: ,
| | - Mshaka E. Mdangi
- Department of Training, Extension services and Research, Ministry of Agriculture, Dodoma, Tanzania; e-mail:
| | - Loth S. Mulungu
- Pest Management Centre, Sokoine University of Agriculture, Morogoro, Tanzania; e-mail: ,
| |
Collapse
|
3
|
Bajaru SB, Manakadan R. Population Characteristics and Microhabitat Preference of Critically Endangered Kondana Soft-Furred Rat (Millardia kondana) in the Northern Western Ghats, India. MAMMAL STUDY 2020. [DOI: 10.3106/ms2019-0049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Sameer B. Bajaru
- Natural History Collection Department, Bombay Natural History Society, Hornbill House, S. B. S. Road, Fort, Mumbai, 400001, India
| | - Ranjit Manakadan
- Bombay Natural History Society, Hornbill House, S. B. S. Road, Fort, Mumbai 400001, India
| |
Collapse
|
4
|
Bajaru SB, Kulavmode AR, Manakadan R. Influence of microhabitat and landscape-scale factors on the richness and occupancy of small mammals in the northern Western Ghats: A multi-species occupancy modeling approach. Mamm Biol 2019. [DOI: 10.1016/j.mambio.2019.10.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
5
|
Rebelo AJ, Rebelo AG, Rebelo AD, Bronner GN. Effects of alien pine plantations on small mammal community structure in a southern African biodiversity hotspot. Afr J Ecol 2019. [DOI: 10.1111/aje.12591] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Alanna J. Rebelo
- Department of Conservation Ecology and Entomology Stellenbosch University Stellenbosch South Africa
- Ecosystem Management Research Group (ECOBE), Department of Biology University of Antwerp Wilrijk Belgium
| | | | - Alexander D. Rebelo
- Department of Botany and Zoology Stellenbosch University Stellenbosch South Africa
| | - Gary N. Bronner
- Department of Biological Sciences University of Cape Town Rondebosch South Africa
| |
Collapse
|
6
|
Zwolak R, Witczuk J, Bogdziewicz M, Rychlik L, Pagacz S. Simultaneous population fluctuations of rodents in montane forests and alpine meadows suggest indirect effects of tree masting. J Mammal 2018. [DOI: 10.1093/jmammal/gyy034] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- Rafał Zwolak
- Department of Systematic Zoology, Faculty of Biology, Adam Mickiewicz University, Umultowska, Poznań, Poland
| | - Julia Witczuk
- Museum and Institute of Zoology, Polish Academy of Sciences, Wilcza, Warszawa, Poland
| | - Michał Bogdziewicz
- Department of Systematic Zoology, Faculty of Biology, Adam Mickiewicz University, Umultowska, Poznań, Poland
- CREAF, Campus de Bellaterra (UAB) Edifici C, Cerdanyola del Valles, Catalonia, Spain
| | - Leszek Rychlik
- Department of Systematic Zoology, Faculty of Biology, Adam Mickiewicz University, Umultowska, Poznań, Poland
| | - Stanisław Pagacz
- Museum and Institute of Zoology, Polish Academy of Sciences, Wilcza, Warszawa, Poland
| |
Collapse
|
7
|
Srivathsa A, Parameshwaran R, Sharma S, Karanth KU. Estimating population sizes of leopard cats in the Western Ghats using camera surveys. J Mammal 2015. [DOI: 10.1093/jmammal/gyv079] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
|
8
|
Addisu A, Bekele A. Habitat preferences, seasonal abundance and diets of rodents in Alage, Southern Ethiopia. Afr J Ecol 2013. [DOI: 10.1111/aje.12115] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Agerie Addisu
- Department of Biology; University of Gondar; P.O. Box 196; Gondar; Ethiopia
| | - Afework Bekele
- Department of Biology; Addis Ababa University; P.O. Box 1176; Addis Ababa; Ethiopia
| |
Collapse
|
9
|
Melo G, Sponchiado J, Machado A, Cáceres N. Small-mammal community structure in a South American deciduous Atlantic Forest. COMMUNITY ECOL 2011. [DOI: 10.1556/comec.12.2011.1.8] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
10
|
Kasso M, Bekele A, Hemson G. Species composition, abundance and habitat association of rodents and insectivores from Chilalo-Galama Mountain range, Arsi, Ethiopia. Afr J Ecol 2010. [DOI: 10.1111/j.1365-2028.2010.01222.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
11
|
Naxara L, Pinotti BT, Pardini R. Seasonal Microhabitat Selection by Terrestrial Rodents in an Old-Growth Atlantic Forest. J Mammal 2009. [DOI: 10.1644/08-mamm-a-100.1] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
|
12
|
Wells K, Pfeiffer M, Lakim MB, Kalko EKV. Movement trajectories and habitat partitioning of small mammals in logged and unlogged rain forests on Borneo. J Anim Ecol 2008; 75:1212-23. [PMID: 16922857 DOI: 10.1111/j.1365-2656.2006.01144.x] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
1. Non-volant animals in tropical rain forests differ in their ability to exploit the habitat above the forest floor and also in their response to habitat variability. It is predicted that specific movement trajectories are determined both by intrinsic factors such as ecological specialization, morphology and body size and by structural features of the surrounding habitat such as undergrowth and availability of supportive structures. 2. We applied spool-and-line tracking in order to describe movement trajectories and habitat segregation of eight species of small mammals from an assemblage of Muridae, Tupaiidae and Sciuridae in the rain forest of Borneo where we followed a total of 13,525 m path. We also analysed specific changes in the movement patterns of the small mammals in relation to habitat stratification between logged and unlogged forests. Variables related to climbing activity of the tracked species as well as the supportive structures of the vegetation and undergrowth density were measured along their tracks. 3. Movement patterns of the small mammals differed significantly between species. Most similarities were found in congeneric species that converged strongly in body size and morphology. All species were affected in their movement patterns by the altered forest structure in logged forests with most differences found in Leopoldamys sabanus. However, the large proportions of short step lengths found in all species for both forest types and similar path tortuosity suggest that the main movement strategies of the small mammals were not influenced by logging but comprised generally a response to the heterogeneous habitat as opposed to random movement strategies predicted for homogeneous environments. 4. Overall shifts in microhabitat use showed no coherent trend among species. Multivariate (principal component) analysis revealed contrasting trends for convergent species, in particular for Maxomys rajah and M. surifer as well as for Tupaia longipes and T. tana, suggesting that each species was uniquely affected in its movement trajectories by a multiple set of environmental and intrinsic features.
Collapse
Affiliation(s)
- Konstans Wells
- Department of Experimental Ecology, University of Ulm, Albert-Einstein-Allee 11, D 89069 Ulm, Germany.
| | | | | | | |
Collapse
|
13
|
Datiko D, Bekele A, Belay G. Species composition, distribution and habitat association of rodents from Arbaminch forest and farmlands, Ethiopia. Afr J Ecol 2007. [DOI: 10.1111/j.1365-2028.2007.00789.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Demeke Datiko
- Department of Biology, Addis Ababa University, PO Box 1176, Addis Ababa, Ethiopia
| | | | - Gurja Belay
- Department of Biology, Addis Ababa University, PO Box 1176, Addis Ababa, Ethiopia
| |
Collapse
|
14
|
SUZUKI S, KITAMURA S, KON M, POONSWAD P, CHUAILUA P, PLONGMAI K, YUMOTO T, NOMA N, MARUHASHI T, WOHANDEE P. Fruit visitation patterns of small mammals on the forest floor in a tropical seasonal forest of Thailand. TROPICS 2007. [DOI: 10.3759/tropics.16.17] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|