1
|
Dai H, Yin M, Zhang S, Wei J, Jiao T, Chen Q, Chen Q, Chen X, Oyama M, Chen X. A paper-based photoelectrochemical aptsensor using near-infrared light-responsive AgBiS 2 nanoflowers as probes for the detection of Staphylococcus aureus in pork. Talanta 2024; 266:125128. [PMID: 37639873 DOI: 10.1016/j.talanta.2023.125128] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 07/11/2023] [Accepted: 08/24/2023] [Indexed: 08/31/2023]
Abstract
Staphylococcus aureus is a gram-positive bacterium that can easily cause outbreaks of food-borne diseases. In this work, a signal-enhanced three-dimensional paper-based photoelectrochemical (PEC) aptsensor for the rapid and sensitive determination of S. aureus was developed. Specifically, gold nanoparticles (AuNPs) were electrodeposited on a paper-based working electrode to provide binding sites for a sulfhydryl-functionalized aptamer. Subsequently, S. aureus was captured with high specificity by a carboxyl-functionalized aptamer modified with amino-functionalized AgBiS2 nanoflowers (NH2-AgBiS2 NFs), which functionalized as PEC probes that generated strong photocurrent under irradiation with 980-nm light. By exploiting the "aptamer-target-aptamer" PEC sensing platform, the rapid and ultrasensitive detection of S. aureus was achieved. The sensor had a wide linear range of 20 to 2 × 107 CFU/mL and low limit of detection of 4 CFU/mL. Further, the applicability of the as-prepared aptsensor was successfully certified for the analysis of pork samples artificially contaminated with S. aureus.
Collapse
Affiliation(s)
- Hanjie Dai
- College of Ocean Food and Biological Engineering, Jimei University, Xiamen, 361021, China.
| | - Mingming Yin
- College of Ocean Food and Biological Engineering, Jimei University, Xiamen, 361021, China
| | - Shumin Zhang
- College of Ocean Food and Biological Engineering, Jimei University, Xiamen, 361021, China
| | - Jie Wei
- College of Ocean Food and Biological Engineering, Jimei University, Xiamen, 361021, China
| | - Tianhui Jiao
- College of Ocean Food and Biological Engineering, Jimei University, Xiamen, 361021, China
| | - Qingmin Chen
- College of Ocean Food and Biological Engineering, Jimei University, Xiamen, 361021, China
| | - Quansheng Chen
- College of Ocean Food and Biological Engineering, Jimei University, Xiamen, 361021, China
| | - Xi Chen
- State Key Laboratory of Marine Environmental Science, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China
| | - Munetaka Oyama
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8520, Japan
| | - Xiaomei Chen
- College of Ocean Food and Biological Engineering, Jimei University, Xiamen, 361021, China.
| |
Collapse
|
2
|
Azmat M, Ghalandari B, Jessica J, Xu Y, Li X, Su W, Qiang Z, Deng S, Azmat T, Jiang L, Ding X. PepDRED: De Novo Peptide Design with Strong Binding Affinity for Target Protein. Anal Chem 2023; 95:12264-12272. [PMID: 37553082 DOI: 10.1021/acs.analchem.3c01057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/10/2023]
Abstract
De novo design of peptides that bind specifically to functional proteins is beneficial for diagnostics and therapeutics. However, complex permutations and combinations of amino acids pose significant challenges to the rational design of peptides with desirable stability and affinity. Herein, we develop a computational-based evolution method, namely, peptidomimetics-driven recognition elements design (PepDRED), to derive hemoglobin-inspired peptidomimetics. PepDRED mimics the natural evolutionism pipeline to generate stable apovariant (AVs) structures for wild-type counterparts via automated point mutations and validates their efficiency through free binding energy analysis and per residue energy decomposition analysis. For application demonstration, we applied PepDRED to design de novo peptides to bind FhuA, a typical TonB-dependent transporter (TBDT). TBDTs are Gram-negative bacterial outer membrane proteins responsible for iron transport and vital for bacterial resistance. PepDRED generated a pool of AVs and proceeded to reach an optimized peptide, AV440, with a remarkable binding affinity of -21 kcal/mol. AV440 is ∼2.5-fold stronger than the existing FhuA inhibitor Microcin J25. Network energy analysis further unveils that incorporating methionine (M42) in the N-terminal region significantly enhances inter-residue contacts and binding affinity. PepDRED offers a prompt and efficient in silico approach to develop potent peptide candidates for target proteins.
Collapse
Affiliation(s)
- Mehmoona Azmat
- Department of Anesthesiology and Surgical Intensive Care Unit, Xinhua Hospital, School of Medicine and School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200230, China
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, Shanghai Jiao Tong University, Shanghai 200230, China
| | - Behafarid Ghalandari
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, Shanghai Jiao Tong University, Shanghai 200230, China
| | - Jessica Jessica
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, Shanghai Jiao Tong University, Shanghai 200230, China
| | - Yuechen Xu
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, Shanghai Jiao Tong University, Shanghai 200230, China
| | - Xinle Li
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, Shanghai Jiao Tong University, Shanghai 200230, China
| | - Wenqiong Su
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, Shanghai Jiao Tong University, Shanghai 200230, China
| | - Zhang Qiang
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, Shanghai Jiao Tong University, Shanghai 200230, China
| | - Shuxin Deng
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, Shanghai Jiao Tong University, Shanghai 200230, China
| | - Tabina Azmat
- Department of Cyber Security, AIR University, PAF Complex, E-9, Islamabad 44000, Pakistan
| | - Lai Jiang
- Department of Anesthesiology and Surgical Intensive Care Unit, Xinhua Hospital, School of Medicine and School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200230, China
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, Shanghai Jiao Tong University, Shanghai 200230, China
| | - Xianting Ding
- Department of Anesthesiology and Surgical Intensive Care Unit, Xinhua Hospital, School of Medicine and School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200230, China
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, Shanghai Jiao Tong University, Shanghai 200230, China
| |
Collapse
|
3
|
Charlermroj R, Makornwattana M, Phuengwas S, Karoonuthaisiri N. A rapid colorimetric lateral flow test strip for detection of live Salmonella Enteritidis using whole phage as a specific binder. Front Microbiol 2022; 13:1008817. [PMID: 36246228 PMCID: PMC9556839 DOI: 10.3389/fmicb.2022.1008817] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 09/15/2022] [Indexed: 11/13/2022] Open
Abstract
Specific antibodies are essential components of immunoassay, which can be applied for the detection of pathogens. However, producing an antibody specific to live bacterial pathogens by the classical method of immunizing animals with live pathogens can be impractical. Phage display technology is an effective alternative method to obtain antibodies with the desired specificity against selected antigenic molecules. In this study, we demonstrated the power of a microarray-based technique for obtaining specific phage-derived antibody fragments against Salmonella, an important foodborne pathogen. The selected phage-displayed antibody fragments were subsequently employed to develop a lateral flow test strip assay for the detection of live Salmonella. The test strips showed specificity to Salmonella Enteritidis without cross-reactivity to eight serovars of Salmonella or other bacteria strains. The test strip assay requires 15 min, whereas the conventional biochemical and serological confirmation test requires at least 24 h. The microarray screening technique for specific phage-based binders and the test strip method can be further applied to other foodborne pathogens.
Collapse
Affiliation(s)
- Ratthaphol Charlermroj
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand
- *Correspondence: Ratthaphol Charlermroj,
| | - Manlika Makornwattana
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand
| | - Sudtida Phuengwas
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand
| | - Nitsara Karoonuthaisiri
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand
- International Joint Research Center on Food Security, Pathum Thani, Thailand
- Institute for Global Food Security, Queen’s University Belfast, Belfast, United Kingdom
| |
Collapse
|
4
|
Filik K, Szermer-Olearnik B, Oleksy S, Brykała J, Brzozowska E. Bacteriophage Tail Proteins as a Tool for Bacterial Pathogen Recognition-A Literature Review. Antibiotics (Basel) 2022; 11:555. [PMID: 35625199 PMCID: PMC9137617 DOI: 10.3390/antibiotics11050555] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 04/13/2022] [Accepted: 04/19/2022] [Indexed: 12/23/2022] Open
Abstract
In recent years, a number of bacterial detection methods have been developed to replace time-consuming culture methods. One interesting approach is to mobilize the ability of phage tail proteins to recognize and bind to bacterial hosts. In this paper, the authors provide an overview of the current methodologies in which phage proteins play major roles in detecting pathogenic bacteria. Authors focus on proteins capable of recognizing highly pathogenic strains, such as Acinetobacter baumannii, Campylobacter spp., Yersinia pestis, Pseudomonas aeruginosa, Listeria monocytogenes, Staphylococcus aureus, Enterococcus spp., Salmonella spp., and Shigella. These pathogens may be diagnosed by capture-based detection methods involving the use of phage protein-coated nanoparticles, ELISA (enzyme-linked immunosorbent assay)-based methods, or biosensors. The reviewed studies show that phage proteins are becoming an important diagnostic tool due to the discovery of new phages and the increasing knowledge of understanding the specificity and functions of phage tail proteins.
Collapse
Affiliation(s)
- Karolina Filik
- Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, St. R. Weigl 12, 51-167 Wroclaw, Poland; (S.O.); (J.B.); (E.B.)
| | - Bożena Szermer-Olearnik
- Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, St. R. Weigl 12, 51-167 Wroclaw, Poland; (S.O.); (J.B.); (E.B.)
| | | | | | | |
Collapse
|
5
|
Development of a streptavidin-bridged enhanced sandwich ELISA based on self-paired nanobodies for monitoring multiplex Salmonella serogroups. Anal Chim Acta 2022; 1203:339705. [DOI: 10.1016/j.aca.2022.339705] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Revised: 03/01/2022] [Accepted: 03/07/2022] [Indexed: 01/01/2023]
|
6
|
Wang J. A Simple, Rapid and Low-cost 3-Aminopropyltriethoxysilane (APTES)-based Surface Plasmon Resonance Sensor for TNT Explosive Detection. ANAL SCI 2021; 37:1029-1032. [PMID: 33191367 DOI: 10.2116/analsci.20n028] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
In this study, a simple, one-step organic molecule 3-aminopropyltriethoxysilane (APTES) functionalized surface plasmon resonance (SPR) sensor was developed. APTES as an organic ligand immobilized on the SPR sensor chip was used to form the Meisenheimer complex with 2,4,6-trinitrotoluene (TNT). The results of using the APTES-based SPR sensor chip show a highly selective and sensitive (ppb level: parts per billion) detection of TNT explosive. The sensor is expected to have potential for application in the fast screening of the TNT explosive.
Collapse
Affiliation(s)
- Jin Wang
- Graduate School of Interdisciplinary Science and Engineering in Health Systems, Okayama University
| |
Collapse
|
7
|
Aptamer-quantum dots and teicoplanin-gold nanoparticles constructed FRET sensor for sensitive detection of Staphylococcus aureus. CHINESE CHEM LETT 2021. [DOI: 10.1016/j.cclet.2020.07.020] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
|
8
|
Klein AK, Dietzel A. Microfluidic Systems for Antimicrobial Susceptibility Testing. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2021; 179:291-309. [PMID: 33851232 DOI: 10.1007/10_2021_164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Human health is threatened by the spread of antimicrobial resistance and resulting infections. One reason for the resistance spread is the treatment with inappropriate and ineffective antibiotics because standard antimicrobial susceptibility testing methods are time-consuming and laborious. To reduce the antimicrobial susceptibility detection time, minimize treatments with empirical broad-spectrum antibiotics, and thereby combat the further spread of antimicrobial resistance, faster and point-of-care methods are needed. This requires many different research approaches. Microfluidic systems for antimicrobial susceptibility testing offer the possibility to reduce the detection time, as small sample and reagent volumes can be used and the detection of single cells is possible. In some cases, the aim is to use human samples without pretreatment or pre-cultivation. This chapter first provides an overview of conventional detection methods. It then presents the potential of and various current approaches in microfluidics. The focus is on microfluidic methods for phenotypic antimicrobial susceptibility testing.
Collapse
Affiliation(s)
- Ann-Kathrin Klein
- Institute of Microtechnology Technische Universität Braunschweig, Braunschweig, Germany
| | - Andreas Dietzel
- Institute of Microtechnology Technische Universität Braunschweig, Braunschweig, Germany.
| |
Collapse
|
9
|
Pardoux É, Boturyn D, Roupioz Y. Antimicrobial Peptides as Probes in Biosensors Detecting Whole Bacteria: A Review. Molecules 2020; 25:E1998. [PMID: 32344585 PMCID: PMC7221689 DOI: 10.3390/molecules25081998] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Revised: 04/23/2020] [Accepted: 04/23/2020] [Indexed: 12/17/2022] Open
Abstract
Bacterial resistance is becoming a global issue due to its rapid growth. Potential new drugs as antimicrobial peptides (AMPs) are considered for several decades as promising candidates to circumvent this threat. Nonetheless, AMPs have also been used more recently in other settings such as molecular probes grafted on biosensors able to detect whole bacteria. Rapid, reliable and cost-efficient diagnostic tools for bacterial infection could prevent the spread of the pathogen from the earliest stages. Biosensors based on AMPs would enable easy monitoring of potentially infected samples, thanks to their powerful versatility and integrability in pre-existent settings. AMPs, which show a broad spectrum of interactions with bacterial membranes, can be tailored in order to design ubiquitous biosensors easily adaptable to clinical settings. This review aims to focus on the state of the art of AMPs used as the recognition elements of whole bacteria in label-free biosensors with a particular focus on the characteristics obtained in terms of threshold, volume of sample analysable and medium, in order to assess their workability in real-world applications.
Collapse
Affiliation(s)
- Éric Pardoux
- Univ. Grenoble Alpes, CNRS, CEA, IRIG, SyMMES, 38000 Grenoble, France;
- Univ. Grenoble Alpes, CNRS, DCM, 38000 Grenoble, France;
| | - Didier Boturyn
- Univ. Grenoble Alpes, CNRS, DCM, 38000 Grenoble, France;
| | - Yoann Roupioz
- Univ. Grenoble Alpes, CNRS, CEA, IRIG, SyMMES, 38000 Grenoble, France;
| |
Collapse
|
10
|
Zhao D, Liu Y, Pei Z, Zhang Q, Zhang Y, Zhang W, Sang S. Surface stress-induced membrane biosensor based on double-layer stable gold nanostructures for E. coli detection. IET Nanobiotechnol 2019; 13:905-910. [PMID: 31811758 DOI: 10.1049/iet-nbt.2019.0096] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The surface stress-based biosensor has been applied in fast and sensitive identification of Escherichia coli (E. coli)with significance for public health, food, and water safety. However, the stable sensitive element of flexible biosensor based on surface stress is still crucial and challengeable. Here, the authors reported surface stress-induced biosensors based on double-layer stable gold nanostructures (D-AuNS-SSMB) for E. coli O157:H7 detection. Bacterial detection demonstrates the high stability of the biosensor. The resistance change of biosensor is linear to the logarithmic value of the E. coli O157:H7 concentrations ranging from 103 to 107 CFU/mL with a limit of detection (LOD) of 43 CFU/mL. The captured signals of D-AuNS-SSMB comes from surface stress generated by antigen-antibody binding. In addition, the biosensor exhibits good stability, reproducibility and specificity in detection of E. coli O157:H7 as well. This study provides a new preparation method of stable sensitive element for the E. coli detection.
Collapse
Affiliation(s)
- Dong Zhao
- MicroNano System Research Center, Key Lab of Advanced Transducers and Intelligent Control System of the Ministry of Education & College of Information and Computer, Taiyuan University of Technology, Taiyuan, People's Republic of China
| | - Yan Liu
- MicroNano System Research Center, Key Lab of Advanced Transducers and Intelligent Control System of the Ministry of Education & College of Information and Computer, Taiyuan University of Technology, Taiyuan, People's Republic of China
| | - Zhen Pei
- MicroNano System Research Center, Key Lab of Advanced Transducers and Intelligent Control System of the Ministry of Education & College of Information and Computer, Taiyuan University of Technology, Taiyuan, People's Republic of China
| | - Qiang Zhang
- MicroNano System Research Center, Key Lab of Advanced Transducers and Intelligent Control System of the Ministry of Education & College of Information and Computer, Taiyuan University of Technology, Taiyuan, People's Republic of China
| | - Yixia Zhang
- MicroNano System Research Center, Key Lab of Advanced Transducers and Intelligent Control System of the Ministry of Education & College of Information and Computer, Taiyuan University of Technology, Taiyuan, People's Republic of China
| | - Wendong Zhang
- MicroNano System Research Center, Key Lab of Advanced Transducers and Intelligent Control System of the Ministry of Education & College of Information and Computer, Taiyuan University of Technology, Taiyuan, People's Republic of China
| | - Shengbo Sang
- Department of Pathology, Brigham and Women's Hospital/ Harvard Medical School, Boston, MA, USA.
| |
Collapse
|
11
|
Zhu W, Chen Y, He Y, Fang W, Ying Y, Li Y, Fu Y. Cooperation Mode of Outer Surface and Inner Space of Nanochannel: Separation-Detection System Based on Integrated Nanochannel Electrode for Rapid and Facile Detection of Salmonella. Anal Chem 2019; 92:1818-1825. [DOI: 10.1021/acs.analchem.9b03644] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Wenyue Zhu
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China
| | - Yin Chen
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China
| | - Yawen He
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China
| | - Weihuan Fang
- College of Animal Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yibin Ying
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China
- Zhejiang A&F University, Hangzhou, Zhejiang 311300, China
| | - Yanbin Li
- Department of Biological and Agricultural Engineering, University of Arkansas, Fayetteville, Arkansas 72701, United States
| | - Yingchun Fu
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China
| |
Collapse
|
12
|
Bacteriophages as Potential Tools for Detection and Control of Salmonella spp. in Food Systems. Microorganisms 2019; 7:microorganisms7110570. [PMID: 31744260 PMCID: PMC6920764 DOI: 10.3390/microorganisms7110570] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Revised: 11/14/2019] [Accepted: 11/15/2019] [Indexed: 01/21/2023] Open
Abstract
The global problem of antibiotic resistance in bacteria is quickly developing in most antibiotics used in hospitals and livestock. Recently, the infections with multi-drug resistant (MDR) bacteria become a major cause of death worldwide. Current antibiotics are not very effective in treating MDR Salmonella infections, which have become a public health threat. Therefore, novel approaches are needed to rapidly detect and effectively control antibiotic-resistant pathogens. Bacteriophages (phages) have seen renewed attention for satisfying those requirements due to their host-specific properties. Therefore, this review aims to discuss the possibility of using phages as a detection tool for recognizing bacterial cell surface receptors and an alternative approach for controlling antibiotic-resistant pathogens in food systems.
Collapse
|
13
|
Arca-Lafuente S, Martínez-Román P, Mate-Cano I, Madrid R, Briz V. Nanotechnology: A reality for diagnosis of HCV infectious disease. J Infect 2019; 80:8-15. [PMID: 31580870 DOI: 10.1016/j.jinf.2019.09.010] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Accepted: 09/26/2019] [Indexed: 01/24/2023]
Abstract
Hepatitis C virus (HCV) is the primary etiologic agent of liver cirrhosis or hepatocellular carcinoma. HCV elevated infection rates are mostly due to the lack of an accurate and accessible screening and diagnosis, especially in low- and middle-income countries. Conventional HCV diagnostic algorithm consists of a serological test followed by a nucleic acid test. This sequence of tests is time consuming and not affordable for low-resource settings. Nanotechnology have introduced new promising tests for the diagnose of infectious diseases. Based on the employment of nanoparticles and other nanomaterials which lead to highly sensitive and specific nanoscale tests, most of them target pathogen genome. Implementation of nanoscale tests, which are affordable, portable and easy to use by non-specialized personal, would improve HCV diagnosis algorithm. In this review, we have summed up the current emerging nanotechnology tools, which will improve actual screening and treatment programs, and help to reach HCV elimination proposal.
Collapse
Affiliation(s)
- Sonia Arca-Lafuente
- Laboratory of Reference and Research on Viral Hepatitis, National Center for Microbiology, Institute of Health Carlos III, Majadahonda, Madrid, Spain; BioAssays SL, c/Faraday, 7, Parque Científico de Madrid, Campus de Cantoblanco, 28049 Madrid, Spain
| | - Paula Martínez-Román
- Laboratory of Reference and Research on Viral Hepatitis, National Center for Microbiology, Institute of Health Carlos III, Majadahonda, Madrid, Spain
| | - Irene Mate-Cano
- Laboratory of Reference and Research on Viral Hepatitis, National Center for Microbiology, Institute of Health Carlos III, Majadahonda, Madrid, Spain
| | - Ricardo Madrid
- BioAssays SL, c/Faraday, 7, Parque Científico de Madrid, Campus de Cantoblanco, 28049 Madrid, Spain.
| | - Verónica Briz
- Laboratory of Reference and Research on Viral Hepatitis, National Center for Microbiology, Institute of Health Carlos III, Majadahonda, Madrid, Spain.
| |
Collapse
|
14
|
Sato RH, Kosaka PM, Omori ÁT, Ferreira EA, Petri DFS, Malvar Ó, Domínguez CM, Pini V, Ahumada Ó, Tamayo J, Calleja M, Cunha RLOR, Fiorito PA. Development of a methodology for reversible chemical modification of silicon surfaces with application in nanomechanical biosensors. Biosens Bioelectron 2019; 137:287-293. [PMID: 31125818 DOI: 10.1016/j.bios.2019.04.028] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2019] [Revised: 04/09/2019] [Accepted: 04/14/2019] [Indexed: 10/26/2022]
Abstract
Hypervalent tellurium compounds have a particular reactivity towards thiol compounds which are related to their biological properties. In this work, this property was assembled to tellurium-functionalized surfaces. These compounds were used as linkers in the immobilization process of thiolated biomolecules (such as DNA) on microcantilever surfaces. The telluride derivatives acted as reversible binding agents due to their redox properties, providing the regeneration of microcantilever surfaces and allowing their reuse for further biomolecules immobilizations, recycling the functional surface. Initially, we started from the synthesis of 4-((3-((4-methoxyphenyl) tellanyl) phenyl) amino)-4-oxobutanoic acid, a new compound, which was immobilized on a silicon surface. In nanomechanical systems, the detection involved a hybridization study of thiolated DNA sequences. Fluorescence microscopy technique was used to confirm the immobilization and removal of the telluride-DNA system and provided revealing results about the potentiality of applying redox properties to chalcogen derivatives at surfaces.
Collapse
Affiliation(s)
- Roseli H Sato
- CCNH, Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, UFABC, Avenida dos Estados, 5001, 09210-580, Santo André, São Paulo, Brazil
| | - Priscila M Kosaka
- Instituto Micro y Nanotecnología (IMN-CNM), CSIC, Isaac Newton 8 (PTM), Tres Cantos, Madrid, Spain
| | - Álvaro T Omori
- CCNH, Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, UFABC, Avenida dos Estados, 5001, 09210-580, Santo André, São Paulo, Brazil
| | - Edgard A Ferreira
- Escola de Engenharia, Universidade Presbiteriana Mackenzie, 01302-907, São Paulo, SP, Brazil
| | - Denise F S Petri
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, P.O. Box 26077, São Paulo, SP, 05513-970, Brazil
| | - Óscar Malvar
- Instituto Micro y Nanotecnología (IMN-CNM), CSIC, Isaac Newton 8 (PTM), Tres Cantos, Madrid, Spain
| | - Carmen M Domínguez
- Instituto Micro y Nanotecnología (IMN-CNM), CSIC, Isaac Newton 8 (PTM), Tres Cantos, Madrid, Spain
| | - Valerio Pini
- Instituto Micro y Nanotecnología (IMN-CNM), CSIC, Isaac Newton 8 (PTM), Tres Cantos, Madrid, Spain
| | - Óscar Ahumada
- Mecwins S.A, Plaza de la Encina 10-11, Núcleo 5, 2 B, 28760, Tres Cantos, Madrid, Spain
| | - Javier Tamayo
- Instituto Micro y Nanotecnología (IMN-CNM), CSIC, Isaac Newton 8 (PTM), Tres Cantos, Madrid, Spain
| | - Montserrat Calleja
- Instituto Micro y Nanotecnología (IMN-CNM), CSIC, Isaac Newton 8 (PTM), Tres Cantos, Madrid, Spain
| | - Rodrigo L O R Cunha
- CCNH, Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, UFABC, Avenida dos Estados, 5001, 09210-580, Santo André, São Paulo, Brazil
| | - Pablo A Fiorito
- Centro de Investigaciones y Transferencia Villa María (CIT VM - CONICET), Instituto de Ciencias Básicas y Aplicadas, Universidad Nacional de Villa María, Av. Arturo Jauretche 1555, Villa María, C.P, 5900, Córdoba, Argentina.
| |
Collapse
|
15
|
Shin DJ, Andini N, Hsieh K, Yang S, Wang TH. Emerging Analytical Techniques for Rapid Pathogen Identification and Susceptibility Testing. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2019; 12:41-67. [PMID: 30939033 PMCID: PMC7369001 DOI: 10.1146/annurev-anchem-061318-115529] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
In the face of looming threats from multi-drug resistant microorganisms, there is a growing need for technologies that will enable rapid identification and drug susceptibility profiling of these pathogens in health care settings. In particular, recent progress in microfluidics and nucleic acid amplification is pushing the boundaries of timescale for diagnosing bacterial infections. With a diverse range of techniques and parallel developments in the field of analytical chemistry, an integrative perspective is needed to understand the significance of these developments. This review examines the scope of new developments in assay technologies grouped by key enabling domains of research. First, we examine recent development in nucleic acid amplification assays for rapid identification and drug susceptibility testing in bacterial infections. Next, we examine advances in microfluidics that facilitate acceleration of diagnostic assays via integration and scale. Lastly, recentdevelopments in biosensor technologies are reviewed. We conclude this review with perspectives on the use of emerging concepts to develop paradigm-changing assays.
Collapse
Affiliation(s)
- Dong Jin Shin
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA;
| | - Nadya Andini
- Department of Emergency Medicine, Stanford University, Stanford, California 94305, USA;
| | - Kuangwen Hsieh
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA;
| | - Samuel Yang
- Department of Emergency Medicine, Stanford University, Stanford, California 94305, USA;
| | - Tza-Huei Wang
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA;
| |
Collapse
|
16
|
Joye IJ, Corradini MG, Duizer LM, Bohrer BM, LaPointe G, Farber JM, Spagnuolo PA, Rogers MA. A comprehensive perspective of food nanomaterials. ADVANCES IN FOOD AND NUTRITION RESEARCH 2019; 88:1-45. [PMID: 31151722 DOI: 10.1016/bs.afnr.2019.01.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Nanotechnology is a rapidly developing toolbox that provides solutions to numerous challenges in the food industry and meet public demands for healthier and safer food products. The diversity of nanostructures and their vast, tunable functionality drives their inclusion in food products and packaging materials to improve their nutritional quality through bioactive fortification and probiotics encapsulation, enhance their safety due to their antimicrobial and sensing capabilities and confer novel sensorial properties. In this food nanotechnology state-of-the-art communication, matrix materials with particular focus on food-grade components, existing and novel production techniques, and current and potential applications in the fields of food quality, safety and preservation, nutrient bioaccessibility and digestibility will be detailed. Additionally, a thorough analysis of potential strategies to assess the safety of these novel nanostructures is presented.
Collapse
Affiliation(s)
- I J Joye
- Department of Food Science, University of Guelph, Guelph, ON, Canada
| | - M G Corradini
- Arrell Food Institute, University of Guelph, Guelph, ON, Canada
| | - L M Duizer
- Department of Food Science, University of Guelph, Guelph, ON, Canada
| | - B M Bohrer
- Department of Food Science, University of Guelph, Guelph, ON, Canada
| | - G LaPointe
- Department of Food Science, University of Guelph, Guelph, ON, Canada
| | - J M Farber
- Department of Food Science, University of Guelph, Guelph, ON, Canada
| | - P A Spagnuolo
- Department of Food Science, University of Guelph, Guelph, ON, Canada
| | - M A Rogers
- Department of Food Science, University of Guelph, Guelph, ON, Canada.
| |
Collapse
|
17
|
Niyomdecha S, Limbut W, Numnuam A, Kanatharana P, Charlermroj R, Karoonuthaisiri N, Thavarungkul P. Phage-based capacitive biosensor for Salmonella detection. Talanta 2018; 188:658-664. [PMID: 30029427 DOI: 10.1016/j.talanta.2018.06.033] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Revised: 06/09/2018] [Accepted: 06/09/2018] [Indexed: 11/18/2022]
Abstract
This article reports the detection of Salmonella spp. based on M13 bacteriophage in a capacitive flow injection system. Salmonella-specific M13 bacteriophage was immobilized on a polytyramine/gold surface using glutaraldehyde as a crosslinker. The M13 bacteriophage modified electrode can specifically bind to Salmonella spp. via the amino acid groups on the filamentous phage. An alkaline solution was used to break the binding between the sensing surface and the analyte to allow renewable use up to 40 times. This capacitive system provided good reproducibility with a relative standard deviation (RSD) of 1.1%. A 75 µL min-1 flow rate and a 300 µL sample volume provided a wide linear range, from 2.0 × 102 to 1.0 × 107 cfu mL-1, with a detection limit of 200 cfu mL-1. Bacteria concentration can be analyzed within 40 min after the sample injection. When applied to test real samples (raw chicken meat) it provided good recoveries (100-111%). An enrichment process was also explored to increase the bacteria concentration, enabling a quantitative detection of Salmonella spp. This biosensor opens a new opportunity for the detection of pathogenic bacteria using bacteriophage.
Collapse
Affiliation(s)
- Saroh Niyomdecha
- Trace Analysis and Biosensor Research Center, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Center of Excellence for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
| | - Warakorn Limbut
- Trace Analysis and Biosensor Research Center, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Center of Excellence for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Department of Applied Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
| | - Apon Numnuam
- Trace Analysis and Biosensor Research Center, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Center of Excellence for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
| | - Proespichaya Kanatharana
- Trace Analysis and Biosensor Research Center, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Center of Excellence for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
| | - Ratthaphol Charlermroj
- National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand
| | - Nitsara Karoonuthaisiri
- National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand.
| | - Panote Thavarungkul
- Trace Analysis and Biosensor Research Center, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Center of Excellence for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Department of Physics, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand.
| |
Collapse
|
18
|
Abdelhamid HN, Wu HF. Selective biosensing of Staphylococcus aureus using chitosan quantum dots. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 188:50-56. [PMID: 28689078 DOI: 10.1016/j.saa.2017.06.047] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2016] [Revised: 05/29/2017] [Accepted: 06/30/2017] [Indexed: 06/07/2023]
Abstract
Selective biosensing of Staphylococcus aureus (S. aureus) using chitosan modified quantum dots (CTS@CdS QDs) in the presence of hydrogen peroxide is reported. The method is based on the intrinsic positive catalase activity of S. aureus. CTS@CdS quantum dots provide high dispersion in aqueous media with high fluorescence emission. Staphylococcus aureus causes a selective quenching of the fluorescence emission of CTS@CdS QDs in the presence of H2O2 compared to other pathogens such as Escherichia coli and Pseudomonas aeruginosa. The intrinsic enzymatic character of S. aureus (catalase positive) offers selective and fast biosensing. The present method is highly selective for positive catalase species and requires no expensive reagents such as antibodies, aptamers or microbeads. It could be extended for other species that are positive catalase.
Collapse
Affiliation(s)
- Hani Nasser Abdelhamid
- Department of Chemistry, National Sun Yat-Sen University, Kaohsiung 804, Taiwan; School of Pharmacy, College of Pharmacy, Kaohsiung Medical University, Kaohsiung 800, Taiwan; Department of Chemistry, Assuit University, Assuit 71515, Egypt
| | - Hui-Fen Wu
- Department of Chemistry, National Sun Yat-Sen University, Kaohsiung 804, Taiwan; School of Pharmacy, College of Pharmacy, Kaohsiung Medical University, Kaohsiung 800, Taiwan; Center for Nanoscience and Nanotechnology, National Sun Yat-Sen University, Kaohsiung 804, Taiwan; Doctoral Degree Program in Marine Biotechnology, National Sun Yat-Sen University and Academia Sinica, Kaohsiung 80424, Taiwan; Institue of Medical Science and Technology, National Sun Yat-Sen University, Kaohsiung 804, Taiwan.
| |
Collapse
|
19
|
Shelby T, Sulthana S, McAfee J, Banerjee T, Santra S. Foodborne Pathogen Screening Using Magneto-fluorescent Nanosensor: Rapid Detection of E. Coli O157:H7. J Vis Exp 2017. [PMID: 28994755 DOI: 10.3791/55821] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
Abstract
Enterohemorrhagic Escherichia coli O157:H7 has been linked to both waterborne and foodborne illnesses, and remains a threat despite the food- and water-screening methods used currently. While conventional bacterial detection methods, such as polymerase chain reaction (PCR) and enzyme-linked immunosorbent assays (ELISA) can specifically detect pathogenic contaminants, they require extensive sample preparation and lengthy waiting periods. In addition, these practices demand sophisticated laboratory instruments and settings, and must be executed by trained professionals. Herein, a protocol is proposed for a simpler diagnostic technique that features the unique combination of magnetic and fluorescent parameters in a nanoparticle-based platform. The proposed multiparametric magneto-fluorescent nanosensors (MFnS) can detect E. coli O157:H7 contamination with as little as 1 colony-forming unit present in solution within less than 1 h. Furthermore, the ability of MFnS to remain highly functional in complex media such as milk and lake water has been verified. Additional specificity assays were also used to demonstrate the ability of MFnS to only detect the specific target bacteria, even in the presence of similar bacterial species. The pairing of magnetic and fluorescent modalities allows for the detection and quantification of pathogen contamination in a wide range of concentrations, exhibiting its high performance in both early- and late-stage contamination detection. The effectiveness, affordability, and portability of the MFnS make them an ideal candidate for point-of-care screening for bacterial contaminants in a wide range of settings, from aquatic reservoirs to commercially packaged foods.
Collapse
Affiliation(s)
- Tyler Shelby
- Department of Chemistry and Kansas Polymer Research Center, Pittsburg State University
| | - Shoukath Sulthana
- Department of Chemistry and Kansas Polymer Research Center, Pittsburg State University
| | - James McAfee
- Department of Chemistry and Kansas Polymer Research Center, Pittsburg State University
| | - Tuhina Banerjee
- Department of Chemistry and Kansas Polymer Research Center, Pittsburg State University;
| | - Santimukul Santra
- Department of Chemistry and Kansas Polymer Research Center, Pittsburg State University;
| |
Collapse
|
20
|
Zhang S, Geryak R, Geldmeier J, Kim S, Tsukruk VV. Synthesis, Assembly, and Applications of Hybrid Nanostructures for Biosensing. Chem Rev 2017; 117:12942-13038. [DOI: 10.1021/acs.chemrev.7b00088] [Citation(s) in RCA: 206] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Shuaidi Zhang
- School of Materials Science
and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0245, United States
| | - Ren Geryak
- School of Materials Science
and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0245, United States
| | - Jeffrey Geldmeier
- School of Materials Science
and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0245, United States
| | - Sunghan Kim
- School of Materials Science
and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0245, United States
| | - Vladimir V. Tsukruk
- School of Materials Science
and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0245, United States
| |
Collapse
|
21
|
Highly sensitive microcantilever-based immunosensor for the detection of carbofuran in soil and vegetable samples. Food Chem 2017; 229:432-438. [DOI: 10.1016/j.foodchem.2017.02.093] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2016] [Revised: 12/08/2016] [Accepted: 02/17/2017] [Indexed: 11/22/2022]
|
22
|
Banerjee T, Sulthana S, Shelby T, Heckert B, Jewell J, Woody K, Karimnia V, McAfee J, Santra S. Multiparametric Magneto-fluorescent Nanosensors for the Ultrasensitive Detection of Escherichia coli O157:H7. ACS Infect Dis 2016; 2:667-673. [PMID: 27737552 DOI: 10.1021/acsinfecdis.6b00108] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Enterohemorrhagic Escherichia coli O157:H7 presents a serious threat to human health and sanitation and is a leading cause in many food- and waterborne ailments. While conventional bacterial detection methods such as PCR, fluorescent immunoassays and ELISA exhibit high sensitivity and specificity, they are relatively laborious and require sophisticated instruments. In addition, these methods often demand extensive sample preparation and have lengthy readout times. We propose a simpler and more sensitive diagnostic technique featuring multiparametric magneto-fluorescent nanosensors (MFnS). Through a combination of magnetic relaxation and fluorescence measurements, our nanosensors are able to detect bacterial contamination with concentrations as little as 1 colony-forming unit (CFU). The magnetic relaxation property of our MFnS allow for sensitive screening at low target CFU, which is complemented by fluorescence measurements of higher CFU samples. Together, these qualities allow for the detection and quantification of broad-spectrum contaminations in samples ranging from aquatic reservoirs to commercially produced food.
Collapse
Affiliation(s)
- Tuhina Banerjee
- Department of Chemistry, Kansas Polymer Research Center, Pittsburg State University, 1701 South Broadway Street, Pittsburg, Kansas 66762, United States
| | - Shoukath Sulthana
- Department of Chemistry, Kansas Polymer Research Center, Pittsburg State University, 1701 South Broadway Street, Pittsburg, Kansas 66762, United States
| | - Tyler Shelby
- Department of Chemistry, Kansas Polymer Research Center, Pittsburg State University, 1701 South Broadway Street, Pittsburg, Kansas 66762, United States
| | - Blaze Heckert
- Department of Chemistry, Kansas Polymer Research Center, Pittsburg State University, 1701 South Broadway Street, Pittsburg, Kansas 66762, United States
| | - Jessica Jewell
- Department of Chemistry, Kansas Polymer Research Center, Pittsburg State University, 1701 South Broadway Street, Pittsburg, Kansas 66762, United States
| | - Kalee Woody
- Department of Chemistry, Kansas Polymer Research Center, Pittsburg State University, 1701 South Broadway Street, Pittsburg, Kansas 66762, United States
| | - Vida Karimnia
- Department of Chemistry, Kansas Polymer Research Center, Pittsburg State University, 1701 South Broadway Street, Pittsburg, Kansas 66762, United States
| | - James McAfee
- Department of Chemistry, Kansas Polymer Research Center, Pittsburg State University, 1701 South Broadway Street, Pittsburg, Kansas 66762, United States
| | - Santimukul Santra
- Department of Chemistry, Kansas Polymer Research Center, Pittsburg State University, 1701 South Broadway Street, Pittsburg, Kansas 66762, United States
| |
Collapse
|
23
|
Microfluidic cantilever detects bacteria and measures their susceptibility to antibiotics in small confined volumes. Nat Commun 2016; 7:12947. [PMID: 27698375 PMCID: PMC5059454 DOI: 10.1038/ncomms12947] [Citation(s) in RCA: 108] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2016] [Accepted: 08/18/2016] [Indexed: 12/21/2022] Open
Abstract
In the fight against drug-resistant bacteria, accurate and high-throughput detection is essential. Here, a bimaterial microcantilever with an embedded microfluidic channel with internal surfaces chemically or physically functionalized with receptors selectively captures the bacteria passing through the channel. Bacterial adsorption inside the cantilever results in changes in the resonance frequency (mass) and cantilever deflection (adsorption stress). The excitation of trapped bacteria using infrared radiation (IR) causes the cantilever to deflect in proportion to the infrared absorption of the bacteria, providing a nanomechanical infrared spectrum for selective identification. We demonstrate the in situ detection and discrimination of Listeria monocytogenes at a concentration of single cell per μl. Trapped Escherichia coli in the microchannel shows a distinct nanomechanical response when exposed to antibiotics. This approach, which combines enrichment with three different modes of detection, can serve as a platform for the development of a portable, high-throughput device for use in the real-time detection of bacteria and their response to antibiotics. Analysis of bacteria and their response to antibiotics in real time is challenging. Here the authors report a microcantilever based system that can detect and discriminate between bacteria species and, due to the ability to discriminate between alive and dead samples, measure response to antibiotics.
Collapse
|
24
|
|
25
|
Mashaghi S, van Oijen AM. Droplet microfluidics for kinetic studies of viral fusion. BIOMICROFLUIDICS 2016; 10:024102. [PMID: 27014395 PMCID: PMC4788598 DOI: 10.1063/1.4943126] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2016] [Accepted: 02/20/2016] [Indexed: 06/05/2023]
Abstract
Viral infections remain a major threat to public health. The speed with which viruses are evolving drug-resistant mutations necessitates the further development of antiviral therapies with a large emphasis on drug discovery. To facilitate these efforts, there is a need for robust, high-throughput assays that allow the screening of large libraries of compounds, while enabling access to detailed kinetic data on their antiviral activity. We report here the development of a droplet-based microfluidic platform to probe viral fusion, an early critical step in infection by membrane-enveloped viruses such as HIV, Hepatitis C, and influenza. Using influenza A, we demonstrate the measurement of the kinetics of fusion of virions with target liposomes with sub-second temporal resolution. In analogy with acidification of the endosome that triggers fusion in a cellular context, we acidify the content of aqueous droplets containing virions and liposomes in situ by introducing acid from the dispersed phase and visualize the kinetics of fusion by using fluorescent probes.
Collapse
|
26
|
Qiu T, Wang Y, Yu J, Liu S, Wang H, Guo Y, Huang J. Label-free, homogeneous, and ultrasensitive detection of pathogenic bacteria based on target-triggered isothermally exponential amplification. RSC Adv 2016. [DOI: 10.1039/c6ra10646c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A novel colorimetric biosensing strategy for highly selective and ultrasensitive detection of pathogenic bacteria based on target-triggered EXPAR by the property of polymerase and nicking activity of restriction endonuclease has been reported.
Collapse
Affiliation(s)
- Tingting Qiu
- School of Biological Sciences and Technology
- University of Jinan
- Jinan 250022
- P. R. China
| | - Yu Wang
- School of Biological Sciences and Technology
- University of Jinan
- Jinan 250022
- P. R. China
| | - Jinghua Yu
- Key Laboratory of Chemical Sensing & Analysis in Universities of Shandong
- School of Chemistry and Chemical Engineering
- University of Jinan
- Jinan 250022
- P. R. China
| | - Su Liu
- School of Resources and Environment
- University of Jinan
- Jinan 250022
- P. R. China
| | - Hongzhi Wang
- Key Laboratory of Chemical Sensing & Analysis in Universities of Shandong
- School of Chemistry and Chemical Engineering
- University of Jinan
- Jinan 250022
- P. R. China
| | - Yuna Guo
- Key Laboratory of Chemical Sensing & Analysis in Universities of Shandong
- School of Chemistry and Chemical Engineering
- University of Jinan
- Jinan 250022
- P. R. China
| | - Jiadong Huang
- School of Biological Sciences and Technology
- University of Jinan
- Jinan 250022
- P. R. China
- Key Laboratory of Chemical Sensing & Analysis in Universities of Shandong
| |
Collapse
|
27
|
Yoo SM, Lee SY. Optical Biosensors for the Detection of Pathogenic Microorganisms. Trends Biotechnol 2015; 34:7-25. [PMID: 26506111 DOI: 10.1016/j.tibtech.2015.09.012] [Citation(s) in RCA: 309] [Impact Index Per Article: 30.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2015] [Revised: 08/28/2015] [Accepted: 09/17/2015] [Indexed: 12/21/2022]
Abstract
Pathogenic microorganisms are causative agents of various infectious diseases that are becoming increasingly serious worldwide. For the successful treatment of pathogenic infection, the rapid and accurate detection of multiple pathogenic microorganisms is of great importance in all areas related to health and safety. Among various sensor systems, optical biosensors allow easy-to-use, rapid, portable, multiplexed, and cost-effective diagnosis. Here, we review current trends and advances in pathogen-diagnostic optical biosensors. The technological and methodological approaches underlying diverse optical-sensing platforms and methods for detecting pathogenic microorganisms are reviewed, together with the strengths and drawbacks of each technique. Finally, challenges in developing efficient optical biosensor systems and future perspectives are discussed.
Collapse
Affiliation(s)
- Seung Min Yoo
- Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical and Biomolecular Engineering (BK21 plus Program), BioProcess Engineering Research Center, KAIST, Daejeon 34141, Republic of Korea
| | - Sang Yup Lee
- Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical and Biomolecular Engineering (BK21 plus Program), BioProcess Engineering Research Center, KAIST, Daejeon 34141, Republic of Korea.
| |
Collapse
|
28
|
Etayash H, Jiang K, Azmi S, Thundat T, Kaur K. Real-time Detection of Breast Cancer Cells Using Peptide-functionalized Microcantilever Arrays. Sci Rep 2015; 5:13967. [PMID: 26434765 PMCID: PMC4593050 DOI: 10.1038/srep13967] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Accepted: 08/12/2015] [Indexed: 12/26/2022] Open
Abstract
Ligand-directed targeting and capturing of cancer cells is a new approach for detecting circulating tumor cells (CTCs). Ligands such as antibodies have been successfully used for capturing cancer cells and an antibody based system (CellSearch(®)) is currently used clinically to enumerate CTCs. Here we report the use of a peptide moiety in conjunction with a microcantilever array system to selectively detect CTCs resulting from cancer, specifically breast cancer. A sensing microcantilever, functionalized with a breast cancer specific peptide 18-4 (WxEAAYQrFL), showed significant deflection on cancer cell (MCF7 and MDA-MB-231) binding compared to when exposed to noncancerous (MCF10A and HUVEC) cells. The peptide-functionalized microcantilever allowed efficient capture and detection of cancer cells in MCF7 spiked human blood samples emulating CTCs in human blood. A detection limit of 50-100 cancer cells mL(-1) from blood samples was achieved with a capture yield of 80% from spiked whole blood samples. The results emphasize the potential of peptide 18-4 as a novel peptide for capturing and detecting cancer cells in conjunction with nanomechanical cantilever platform. The reported peptide-based cantilever platform represents a new analytical approach that can lead to an alternative to the various detection platforms and can be leveraged to further study CTCs.
Collapse
Affiliation(s)
- Hashem Etayash
- Faculty of Pharmacy and Pharmaceutical Sciences, University of Alberta, Edmonton, Alberta, T6G 2E1, Canada
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta, T6G 2V4, Canada
| | - Keren Jiang
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta, T6G 2V4, Canada
| | - Sarfuddin Azmi
- Faculty of Pharmacy and Pharmaceutical Sciences, University of Alberta, Edmonton, Alberta, T6G 2E1, Canada
| | - Thomas Thundat
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta, T6G 2V4, Canada
| | - Kamaljit Kaur
- Faculty of Pharmacy and Pharmaceutical Sciences, University of Alberta, Edmonton, Alberta, T6G 2E1, Canada
- Chapman University School of Pharmacy (CUSP), Harry and Diane Rinker Health Science Campus, Chapman University, Irvine, California, 92618-1908, USA
| |
Collapse
|
29
|
Wu S, Liu X, Zhou X, Liang XM, Gao D, Liu H, Zhao G, Zhang Q, Wu X. Quantification of cell viability and rapid screening anti-cancer drug utilizing nanomechanical fluctuation. Biosens Bioelectron 2015; 77:164-73. [PMID: 26406457 DOI: 10.1016/j.bios.2015.09.024] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2015] [Revised: 08/31/2015] [Accepted: 09/10/2015] [Indexed: 11/27/2022]
Abstract
Cancer is a serious threat to human health. Although numerous anti-cancer drugs are available clinically, many have shown toxic side effects due to poor tumor-selectivity, and reduced effectiveness due to cancers rapid development of resistance to treatment. The development of new highly efficient and practical methods to quantify cell viability and its change under drug treatment is thus of significant importance in both understanding of anti-cancer mechanism and anti-cancer drug screening. Here, we present an approach of utilizing a nanomechanical fluctuation based highly sensitive microcantilever sensor, which is capable of characterizing the viability of cells and quantitatively screening (within tens of minutes) their responses to a drug with the obvious advantages of a rapid, label-free, quantitative, noninvasive, real-time and in-situ assay. The microcantilever sensor operated in fluctuation mode was used in evaluating the paclitaxel effectiveness on breast cancer cell line MCF-7. This study demonstrated that the nanomechanical fluctuations of the microcantilever sensor are sensitive enough to detect the dynamic variation in cellular force which is provided by the cytoskeleton, using cell metabolism as its energy source, and the dynamic instability of microtubules plays an important role in the generation of the force. We propose that cell viability consists of two parts: biological viability and mechanical viability. Our experimental results suggest that paclitaxel has little effect on biological viability, but has a significant effect on mechanical viability. This new method provides a new concept and strategy for the evaluation of cell viability and the screening of anti-cancer drugs.
Collapse
Affiliation(s)
- Shangquan Wu
- CAS Key Laboratory of Mechanical Behavior and Design of Material, Department of Modern Mechanics, University of Science and Technology of China, Hefei 230027, China; Center for Biomedical Engineering, University of Science and Technology of China, Hefei 230026, China
| | - Xiaoli Liu
- Department of Electronic Science and Technology, University of Science and Technology of China, Hefei 230026, China; Center for Biomedical Engineering, University of Science and Technology of China, Hefei 230026, China
| | - Xiarong Zhou
- CAS Key Laboratory of Mechanical Behavior and Design of Material, Department of Modern Mechanics, University of Science and Technology of China, Hefei 230027, China
| | - Xin M Liang
- Center for Biomedical Engineering, University of Science and Technology of China, Hefei 230026, China
| | - Dayong Gao
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - Hong Liu
- Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China.
| | - Gang Zhao
- Department of Electronic Science and Technology, University of Science and Technology of China, Hefei 230026, China; Center for Biomedical Engineering, University of Science and Technology of China, Hefei 230026, China.
| | - Qingchuan Zhang
- CAS Key Laboratory of Mechanical Behavior and Design of Material, Department of Modern Mechanics, University of Science and Technology of China, Hefei 230027, China; Center for Biomedical Engineering, University of Science and Technology of China, Hefei 230026, China.
| | - Xiaoping Wu
- CAS Key Laboratory of Mechanical Behavior and Design of Material, Department of Modern Mechanics, University of Science and Technology of China, Hefei 230027, China
| |
Collapse
|
30
|
Yan W, Yuan H, Li R, Fan Y, Zhan Y, Qi J, An H, Niu R, Li G, Xing C. Conjugated Polythiophene/Porphyrin Complex for Rapid and Simple Detection of Bacteria in Drinking Water. MACROMOL CHEM PHYS 2015. [DOI: 10.1002/macp.201500188] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Wenmin Yan
- Institute of Polymer Science and Engineering; School of Chemical Engineering; Hebei University of Technology; Tianjin 300130 P.R. China
- Key Laboratory of Hebei Province for Molecular Biophysics; Institute of Biophysics; Hebei University of Technology; Tianjin 300401 P.R. China
| | - Hongbo Yuan
- Key Laboratory of Hebei Province for Molecular Biophysics; Institute of Biophysics; Hebei University of Technology; Tianjin 300401 P.R. China
| | - Ruihua Li
- Key Laboratory of Hebei Province for Molecular Biophysics; Institute of Biophysics; Hebei University of Technology; Tianjin 300401 P.R. China
| | - Yibing Fan
- Key Laboratory of Hebei Province for Molecular Biophysics; Institute of Biophysics; Hebei University of Technology; Tianjin 300401 P.R. China
| | - Yong Zhan
- Key Laboratory of Hebei Province for Molecular Biophysics; Institute of Biophysics; Hebei University of Technology; Tianjin 300401 P.R. China
| | - Junjie Qi
- Key Laboratory of Hebei Province for Molecular Biophysics; Institute of Biophysics; Hebei University of Technology; Tianjin 300401 P.R. China
| | - Hailong An
- Key Laboratory of Hebei Province for Molecular Biophysics; Institute of Biophysics; Hebei University of Technology; Tianjin 300401 P.R. China
| | - Ruimin Niu
- Key Laboratory of Hebei Province for Molecular Biophysics; Institute of Biophysics; Hebei University of Technology; Tianjin 300401 P.R. China
| | - Gang Li
- Institute of Polymer Science and Engineering; School of Chemical Engineering; Hebei University of Technology; Tianjin 300130 P.R. China
| | - Chengfen Xing
- Institute of Polymer Science and Engineering; School of Chemical Engineering; Hebei University of Technology; Tianjin 300130 P.R. China
- Key Laboratory of Hebei Province for Molecular Biophysics; Institute of Biophysics; Hebei University of Technology; Tianjin 300401 P.R. China
| |
Collapse
|
31
|
Azmi S, Jiang K, Stiles M, Thundat T, Kaur K. Detection of Listeria monocytogenes with short peptide fragments from class IIa bacteriocins as recognition elements. ACS COMBINATORIAL SCIENCE 2015; 17:156-63. [PMID: 25548942 DOI: 10.1021/co500079k] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
We employed a direct peptide-bacteria binding assay to screen peptide fragments for high and specific binding to Listeria monocytogenes. Peptides were screened from a peptide array library synthesized on cellulose membrane. Twenty four peptide fragments (each a 14-mer) were derived from three potent anti-listerial peptides, Leucocin A, Pediocin PA1, and Curvacin A, that belong to class IIa bacteriocins. Fragment Leu10 (GEAFSAGVHRLANG), derived from the C-terminal region of Leucocin A, displayed the highest binding among all of the library fragments toward several pathogenic Gram-positive bacteria, including L. monocytogenes, Enterococcus faecalis, and Staphylococcus aureus. The specific binding of Leu10 to L. monocytogenes was further validated using microcantilever (MCL) experiments. Microcantilevers coated with gold were functionalized with peptides by chemical conjugation using a cysteamine linker to yield a peptide density of ∼4.8×10(-3) μmol/cm2 for different peptide fragments. Leu10 (14-mer) functionalized MCL was able to detect Listeria with same sensitivity as that of Leucocin A (37-mer) functionalized MCL, validating the use of short peptide fragments in bacterial detection platforms. Fragment Leu10 folded into a helical conformation in solution, like that of native Leucocin A, suggesting that both Leu10 and Leucocin A may employ a similar mechanism for binding target bacteria. The results show that peptide-conjugated microcantilevers can function as highly sensitive platforms for Listeria detection and hold potential to be developed as biosensors for pathogenic bacteria.
Collapse
Affiliation(s)
- Sarfuddin Azmi
- Faculty
of Pharmacy and Pharmaceutical Sciences, University of Alberta, Edmonton, Alberta T6G 2E1, Canada
| | - Keren Jiang
- Department
of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta T6G 2V4, Canada
| | | | - Thomas Thundat
- Department
of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta T6G 2V4, Canada
| | - Kamaljit Kaur
- Faculty
of Pharmacy and Pharmaceutical Sciences, University of Alberta, Edmonton, Alberta T6G 2E1, Canada
- Chapman
University School of Pharmacy (CUSP), Harry and Diane Rinker Health
Science Campus, Chapman University, Irvine, California 92618-1908, United States
| |
Collapse
|
32
|
Wang J, Segatori L, Biswal SL. Probing the association of triblock copolymers with supported lipid membranes using microcantilevers. SOFT MATTER 2014; 10:6417-6424. [PMID: 24978842 DOI: 10.1039/c4sm00928b] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Pluronics are a class of amphiphilic triblock copolymers that are known to interact with cellular membranes in interesting ways. The solubility of these triblock copolymers in free lipid membranes can be altered with temperature, allowing the possibility of tuning their membrane insertion. However, for supported lipid membranes, the asymmetric local environment and the strong influence of the solid support can alter the solubility of these triblock copolymers in lipid membranes. Here, we probe the interactions of these copolymers with supported lipid membranes using microcantilevers and fluorescence recovery after photobleaching (FRAP) measurements. We measure the solubility and interactions of triblock copolymers (F68 and F98) in supported lipid bilayers as a function of temperature and the length of the copolymer lipophilic block. A Langmuir isotherm model and a free mean area theory are applied to describe the polymer-lipid interactions at the microcantilever surface, determine association constants, and analyze the effect of triblock copolymers on lateral lipid diffusion.
Collapse
Affiliation(s)
- Jinghui Wang
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, TX 77005, USA.
| | | | | |
Collapse
|
33
|
Wang J, Liu KW, Biswal SL. Characterizing α-Helical Peptide Aggregation on Supported Lipid Membranes Using Microcantilevers. Anal Chem 2014; 86:10084-90. [DOI: 10.1021/ac501343b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Jinghui Wang
- Department of Chemical and
Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
| | - Kai-Wei Liu
- Department of Chemical and
Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
| | - Sibani Lisa Biswal
- Department of Chemical and
Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
| |
Collapse
|
34
|
Recent developments in optical detection technologies in lab-on-a-chip devices for biosensing applications. SENSORS 2014; 14:15458-79. [PMID: 25196161 PMCID: PMC4178989 DOI: 10.3390/s140815458] [Citation(s) in RCA: 146] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/15/2014] [Revised: 08/14/2014] [Accepted: 08/15/2014] [Indexed: 01/23/2023]
Abstract
The field of microfluidics has yet to develop practical devices that provide real clinical value. One of the main reasons for this is the difficulty in realizing low-cost, sensitive, reproducible, and portable analyte detection microfluidic systems. Previous research has addressed two main approaches for the detection technologies in lab-on-a-chip devices: (a) study of the compatibility of conventional instrumentation with microfluidic structures, and (b) integration of innovative sensors contained within the microfluidic system. Despite the recent advances in electrochemical and mechanical based sensors, their drawbacks pose important challenges to their application in disposable microfluidic devices. Instead, optical detection remains an attractive solution for lab-on-a-chip devices, because of the ubiquity of the optical methods in the laboratory. Besides, robust and cost-effective devices for use in the field can be realized by integrating proper optical detection technologies on chips. This review examines the recent developments in detection technologies applied to microfluidic biosensors, especially addressing several optical methods, including fluorescence, chemiluminescence, absorbance and surface plasmon resonance.
Collapse
|