1
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Drabkin VD, Eckhardt AK. H-Tunneling Rotamerization in Glycine Imine. J Phys Chem Lett 2025:2223-2230. [PMID: 39983101 DOI: 10.1021/acs.jpclett.5c00117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2025]
Abstract
Quantum mechanical tunneling governs the chemical reactivity at cryogenic temperatures. Here we present the near-infrared (NIR) light-induced generation of a higher energy conformer of glycine imine and its H-tunneling CO bond rotamerization in solid argon (Ar), para-hydrogen (p-H2), and dinitrogen (N2) at cryogenic temperatures. The tunneling half-life for the CO bond rotamerization highly depends on the host matrix and is approximately 5 h in Ar and 18 h in both p-H2 and N2. Surprisingly, experiments in p-H2 revealed a much longer half-life than in Ar, possibly due to the formation of a dinitrogen complex. Deuteration of the carboxylic acid group completely inhibits the CO bond D-tunneling rotamerization. We performed Wentzel - Kramer - Brillouin (WKB) and canonical variational transition state theory (CVT) calculations, incorporating multidimensional small curvature tunneling corrections (SCT), using the B3LYP/cc-pVTZ level of theory. The gas-phase tunneling half-lives are 11 h according to the one-dimensional WKB model and 1 h according to the multidimensional CVT/SCT model, both aligning well with our experimental results.
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Affiliation(s)
- Vladimir D Drabkin
- Lehrstuhl für Organische Chemie II, Ruhr-Universität Bochum, 44801 Bochum, Germany
| | - André K Eckhardt
- Lehrstuhl für Organische Chemie II, Ruhr-Universität Bochum, 44801 Bochum, Germany
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2
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Jiang J, Huang L, Zhu B, Fan W, Wang L, Zhang IY, Fang W, Trabelsi T, Francisco JS, Zeng X. Hydrogen-Bonded Complexes of HPN⋅ and HNP⋅ Radicals with Carbon Monoxide. Angew Chem Int Ed Engl 2025; 64:e202414456. [PMID: 39365837 DOI: 10.1002/anie.202414456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2024] [Revised: 09/25/2024] [Accepted: 10/04/2024] [Indexed: 10/06/2024]
Abstract
Phosphorus mononitride (PN) is a carrier of phosphorus in the interstellar medium. As the simplest derivatives of PN, the radical species HPN⋅ and HNP⋅ have remained elusive. Herein, we report the generation, characterization, and photochemistry of HPN⋅ and HNP⋅ in N2-matrix at 3 K. Specifically, HPN⋅ was formed as a weakly bonded complex with CO in the matrix by 254 nm photolysis of the novel phosphinyl radical HPNCO⋅. The ⋅NPH-CO complex is extremely unstable, as it undergoes spontaneous isomerization to the lower-energy isomer ⋅PNH-CO through fast quantum mechanical tunneling (QMT) with a half-life of 6.1 min at 3 K. Upon further irradiation at 254 nm, the reverse conversion of ⋅PNH-CO to ⋅NPH-CO along with dehydrogenation to yield PN was observed. The characterization ⋅NPH-CO and ⋅PNH-CO with matrix-isolation IR spectroscopy is supported by D, 15N, and 13C isotope labeling and quantum chemical calculations at the XYGJ-OS/AVTZ level of theory, and the mechanism by hydrogen atom tunneling is consistent with multidimensional instanton theory calculations.
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Affiliation(s)
- Junjie Jiang
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai, 200433, China
| | - Longtian Huang
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai, 200433, China
| | - Bifeng Zhu
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai, 200433, China
| | - Wenbin Fan
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai, 200433, China
| | - Lina Wang
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai, 200433, China
| | - Igor Ying Zhang
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai, 200433, China
| | - Wei Fang
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai, 200433, China
| | - Tarek Trabelsi
- Department of Earth and Environment Science, University of Pennsylvania, Philadelphia, Pennsylvania, 19104-6243, USA
| | - Joseph S Francisco
- Department of Earth and Environment Science, University of Pennsylvania, Philadelphia, Pennsylvania, 19104-6243, USA
| | - Xiaoqing Zeng
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai, 200433, China
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3
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Nguyen HVL. Quantum Tunneling: History and Mystery of Large Amplitude Motions over a Century. J Phys Chem Lett 2025; 16:104-113. [PMID: 39703138 PMCID: PMC11726800 DOI: 10.1021/acs.jpclett.4c02914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Revised: 12/06/2024] [Accepted: 12/10/2024] [Indexed: 12/21/2024]
Abstract
Large amplitude motions (LAMs), most notably represented by proton tunneling, mark a significant departure from small amplitude vibrations where protons merely oscillate around their equilibrium positions. These substantial displacements require tunneling through potential energy barriers, leading to splittings in, e.g., rotational spectra. Since Hund's pioneering work in 1927, proton tunneling has offered a unique glimpse into the internal dynamics of gas-phase molecules, with microwave spectroscopy being the key technique for such investigations. The ubiquous LAM type is methyl internal rotation, characterized by 3-fold potentials arising from the interaction between methyl rotors and their molecular frame, with the barrier hindering methyl torsion and the orientation of the torsional axis being defining features. Investigating methyl internal rotations plays a key role in fields ranging from molecular physics, where the methyl rotor serves as a sensitive probe for molecular structures, to atmospheric chemistry and astrophysics, where methyl-containing species have been detected in the Earth's atmosphere and interstellar environments and even discussed as potential probes for effects beyond the standard model of physics. Despite nearly a century of study, modeling methyl internal rotations with appropriate model Hamiltonians and fully understanding the origins of these motions, particularly the factors that influence torsional barriers, remain partially unresolved, reflecting the enduring mystery of quantum tunneling. This Perspective reviews the history of LAMs, highlights advances in decoding their complex spectra, and explores future research directions aimed at uncovering the remaining mysteries of these fascinating motions.
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Affiliation(s)
- Ha Vinh Lam Nguyen
- Univ
Paris Est Creteil and Université Paris Cité, CNRS, LISA, F-94010 Créteil, France
- Institut
Universitaire de France (IUF), 1 rue Descartes, F-75231 Paris cedex 05, France
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4
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Qiu G. Exceptions, Paradoxes, and Their Resolutions in Chemical Reactivity. J Org Chem 2024; 89:16307-16316. [PMID: 39506459 PMCID: PMC11574852 DOI: 10.1021/acs.joc.4c02246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2024]
Abstract
Progress in chemistry has primarily been framed through inductive processes, leading to the frequent emergence of exceptions and unexpected reactivities. These anomalies─ranging from surprising reactivity trends and paradoxical understandings to unanticipated parameter influences and unexpected successes or failures in synthetic methods─offer valuable insights that can drive scientific discovery. While it is commonly accepted that such exceptions can drive progress, many have been passively accepted without being explored for opportunities. Although numerous chemists have addressed exceptions and refined chemical models and theories, employing a systematic framework for actively exploring and understanding the underlying causes of exceptions could resolve paradoxes in broader contexts and create a greater impact than treating anomalies as isolated occurrences. This perspective demonstrates a proactive epistemic approach to uncovering the opportunities presented by exceptions and promotes deliberate, thoughtful engagement with paradoxes and anomalies. While the examples primarily focus on physical organic chemistry, the concepts are broadly applicable across various fields in chemical science. The thinking framework presented here is neither exhaustive nor prescriptive, but it outlines one of many potentially possible ways to inspire further development in how these anomalies could be harnessed for advancement.
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Affiliation(s)
- Guanqi Qiu
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470, Mülheim an der Ruhr, Germany
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5
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Zhao C, Diao J, Liu Z, Hao J, He S, Li S, Li X, Li G, Fu Q, Jia C, Guo X. Electrical monitoring of single-event protonation dynamics at the solid-liquid interface and its regulation by external mechanical forces. Nat Commun 2024; 15:8835. [PMID: 39397019 PMCID: PMC11471814 DOI: 10.1038/s41467-024-53179-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 10/04/2024] [Indexed: 10/15/2024] Open
Abstract
Detecting chemical reaction dynamics at solid-liquid interfaces is important for understanding heterogeneous reactions. However, there is a lack of exploration of interface reaction dynamics from the single-molecule perspective, which can reveal the intrinsic reaction mechanism underlying ensemble experiments. Here, single-event protonation reaction dynamics at a solid-liquid interface are studied in-situ using single-molecule junctions. Molecules with amino terminal groups are used to construct single-molecule junctions. An interfacial cationic state present after protonation is discovered. Real-time electrical measurements are used to monitor the reversible reaction between protonated and deprotonated states, thereby revealing the interfacial reaction mechanism through dynamic analysis. The protonation reaction rate constant has a linear positive correlation with proton concentration, whereas the deprotonation reaction rate constant has a linear negative correlation. In addition, external mechanical forces can effectively regulate the protonation reaction process. This work provides a single-molecule perspective for exploring interface science, which will contribute to the development of heterogeneous catalysis and electrochemistry.
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Affiliation(s)
- Cong Zhao
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, China
| | - Jiazheng Diao
- Hefei National Research Center for Physical Sciences at the Microscale, School of Future Technology, University of Science and Technology of China, Hefei, China
| | - Zhao Liu
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, China
| | - Jie Hao
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, China
| | - Suhang He
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, China
| | - Shaojia Li
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, China
| | - Xingxing Li
- Hefei National Research Center for Physical Sciences at the Microscale, School of Future Technology, University of Science and Technology of China, Hefei, China
- Hefei National Laboratory, University of Science and Technology of China, Hefei, China
| | - Guangwu Li
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, China.
- Shenzhen Research, Institute of Nankai University, 16th Floor, Yantian Science & Technology Building, Shenzhen, China.
| | - Qiang Fu
- Hefei National Research Center for Physical Sciences at the Microscale, School of Future Technology, University of Science and Technology of China, Hefei, China.
- Hefei National Laboratory, University of Science and Technology of China, Hefei, China.
| | - Chuancheng Jia
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, China.
| | - Xuefeng Guo
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, China.
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, China.
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6
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Zhou Y, Fan W, Tang J, Fang W, Zhou M. Heavy-Atom Tunneling in Ring-Closure Reactions of Beryllium Ozonide Complexes. J Am Chem Soc 2024; 146:26719-26725. [PMID: 39290183 DOI: 10.1021/jacs.4c06137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/19/2024]
Abstract
Quantum mechanical tunneling (QMT) has long been recognized as crucial for understanding chemical reaction mechanisms, particularly in reactions involving light atoms like hydrogen. However, recent findings have expanded this understanding to include heavy-atom tunneling reactions. In this report, we present the observation of two heavy-atom tunneling reactions involving the spontaneous conversions from end-on bonded beryllium ozonide complexes, OBeOOO (A) and BeOBeOOO (C), to their corresponding side-on bonded ozonide isomers, OBe(η2-O3) (B) and BeOBe(η2-O3) (D), respectively, in a cryogenic neon matrix. This discovery is supported by the weak temperature dependence of the rate constants and unusually large 16O/18O kinetic isotope effects. Quantum chemistry calculations reveal extremely low barriers (<1 kcal/mol) for both ring-closure reactions. Additionally, instanton theory calculations on both reactions unveil that the tunneling processes involve the concerted motion of all four oxygen atoms.
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Affiliation(s)
- Yangyu Zhou
- Department of Chemistry, Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200438, China
| | - Wenbin Fan
- Department of Chemistry, Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200438, China
| | - Jingjing Tang
- Department of Chemistry, Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200438, China
| | - Wei Fang
- Department of Chemistry, Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200438, China
| | - Mingfei Zhou
- Department of Chemistry, Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai 200438, China
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7
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Roque JPL, Nunes CM, Schreiner PR, Fausto R. Hydrogen Tunneling Exhibiting Unexpectedly Small Primary Kinetic Isotope Effects. Chemistry 2024; 30:e202401323. [PMID: 38709063 DOI: 10.1002/chem.202401323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 04/29/2024] [Accepted: 05/06/2024] [Indexed: 05/07/2024]
Abstract
Probing quantum mechanical tunneling (QMT) in chemical reactions is crucial to understanding and developing new transformations. Primary H/D kinetic isotopic effects (KIEs) beyond the semiclassical maximum values of 7-10 (room temperature) are commonly used to assess substantial QMT contributions in one-step hydrogen transfer reactions, because of the much greater QMT probability of protium vs. deuterium. Nevertheless, we report here the discovery of a reaction model occurring exclusively by H-atom QMT with residual primary H/D KIEs. 2-Hydroxyphenylnitrene, generated in N2 matrix, was found to isomerize to an imino-ketone via sequential (domino) QMT involving anti to syn OH-rotamerization (rate determining step) and [1,4]-H shift reactions. These sequential QMT transformations were also observed in the OD-deuterated sample, and unexpected primary H/D KIEs between 3 and 4 were measured at 3 to 20 K. Analogous residual primary H/D KIEs were found in the anti to syn OH-rotamerization QMT of 2-cyanophenol in a N2 matrix. Evidence strongly indicates that these intriguing isotope-insensitive QMT reactivities arise due to the solvation effects of the N2 matrix medium, putatively through coupling with the moving H/D tunneling particle. Should a similar scenario be extrapolated to conventional solution conditions, then QMT may have been overlooked in many chemical reactions.
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Affiliation(s)
- José P L Roque
- University of Coimbra, CQC-IMS, Department of Chemistry, 3004-535, Coimbra, Portugal
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392, Giessen, Germany
| | - Cláudio M Nunes
- University of Coimbra, CQC-IMS, Department of Chemistry, 3004-535, Coimbra, Portugal
| | - Peter R Schreiner
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392, Giessen, Germany
| | - Rui Fausto
- University of Coimbra, CQC-IMS, Department of Chemistry, 3004-535, Coimbra, Portugal
- Faculty Sciences and Letters, Department of Physics, Istanbul Kultur University, Bakirkoy, Istanbul, 34158, Turkey
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8
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Moscato D, Mandelli G, Bondanza M, Lipparini F, Conte R, Mennucci B, Ceotto M. Unraveling Water Solvation Effects with Quantum Mechanics/Molecular Mechanics Semiclassical Vibrational Spectroscopy: The Case of Thymidine. J Am Chem Soc 2024; 146:8179-8188. [PMID: 38470354 DOI: 10.1021/jacs.3c12700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
We introduce a quantum mechanics/molecular mechanics semiclassical method for studying the solvation process of molecules in water at the nuclear quantum mechanical level with atomistic detail. We employ it in vibrational spectroscopy calculations because this is a tool that is very sensitive to the molecular environment. Specifically, we look at the vibrational spectroscopy of thymidine in liquid water. We find that the C═O frequency red shift and the C═C frequency blue shift, experienced by thymidyne upon solvation, are mainly due to reciprocal polarization effects, that the molecule and the water solvent exert on each other, and nuclear zero-point energy effects. In general, this work provides an accurate and practical tool to study quantum vibrational spectroscopy in solution and condensed phase, incorporating high-level and computationally affordable descriptions of both electronic and nuclear problems.
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Affiliation(s)
- Davide Moscato
- Dipartimento di Chimica, Università degli Studi di Milano, Via Golgi, 19, 20133 Milano, Italy
| | - Giacomo Mandelli
- Dipartimento di Chimica, Università degli Studi di Milano, Via Golgi, 19, 20133 Milano, Italy
| | - Mattia Bondanza
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Giuseppe Moruzzi, 13, 56124 Pisa, Italy
| | - Filippo Lipparini
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Giuseppe Moruzzi, 13, 56124 Pisa, Italy
| | - Riccardo Conte
- Dipartimento di Chimica, Università degli Studi di Milano, Via Golgi, 19, 20133 Milano, Italy
| | - Benedetta Mennucci
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Giuseppe Moruzzi, 13, 56124 Pisa, Italy
| | - Michele Ceotto
- Dipartimento di Chimica, Università degli Studi di Milano, Via Golgi, 19, 20133 Milano, Italy
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9
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Waluk J. Nuclear Quantum Effects in Proton or Hydrogen Transfer. J Phys Chem Lett 2024; 15:598-607. [PMID: 38198616 PMCID: PMC10801683 DOI: 10.1021/acs.jpclett.3c03368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 01/05/2024] [Accepted: 01/05/2024] [Indexed: 01/12/2024]
Abstract
Proton or hydrogen transfers, basic chemical reactions, proceed either by thermally activated barrier crossing or via tunneling. Studies of molecules undergoing single or double proton or hydrogen transfer in the ground or excited electronic state reveal that tunneling can dominate under conditions usually considered to favor the thermal process. Moreover, the tunneling probability strongly varies for excitation of certain vibrational modes, which changes the effective barrier and/or proton transfer distance. When the reaction is fast compared to vibrational relaxation, the mode selectivity can still be maintained for molecules in solutions at 293 K. These observations point to dangers of relating the calculated minimum energy paths and the associated barriers to the experimentally obtained activation energies. The multidimensional character of the reaction coordinate is obvious; it can dramatically change for slowly and rapidly relaxing environments. We postulate that the hydrogen bond definition should be extended by specifically including the role of molecular vibrations.
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Affiliation(s)
- Jacek Waluk
- Institute
of Physical Chemistry, Polish Academy of
Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
- Faculty
of Mathematics and Science, Cardinal Stefan
Wyszyński University, Dewajtis 5, 01-815 Warsaw, Poland
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10
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Lu B, Zeng X. Phosphinidenes: Fundamental Properties and Reactivity. Chemistry 2023:e202303283. [PMID: 38108540 DOI: 10.1002/chem.202303283] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Revised: 12/12/2023] [Accepted: 12/18/2023] [Indexed: 12/19/2023]
Abstract
Phosphinidenes are heavy congeners of nitrenes that have been broadly used as in situ reagents in synthetic phosphorus chemistry and also serve as versatile ligands in coordination with transition metals. However, the detection of free phosphinidenes is largely challenged by their high reactivity and also the lack of suitable synthetic methods, rendering the knowledge about the fundamental properties of this class of low-valent phosphorus compounds limited. Recently, an increasing number of free phosphinidenes bearing prototype structural and bonding properties have been prepared for the first time, thus enabling the exploration of their distinct reactivity from the nitrene analogues. This Concept article will discuss the experimental approaches for the generation of the highly unstable phosphinidenes and highlight their distinct reactivity from the nitrogen analogues so as to stimuate future studies about their potential applications in phosphorus chemistry.
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Affiliation(s)
- Bo Lu
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai, 200433, China
| | - Xiaoqing Zeng
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, Shanghai, 200433, China
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11
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Qiu G, Schreiner PR. The Intrinsic Barrier Width and Its Role in Chemical Reactivity. ACS CENTRAL SCIENCE 2023; 9:2129-2137. [PMID: 38033803 PMCID: PMC10683502 DOI: 10.1021/acscentsci.3c00926] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 09/29/2023] [Accepted: 10/12/2023] [Indexed: 12/02/2023]
Abstract
Chemical reactions are in virtually all cases understood and explained on the basis of depicting the molecular potential energy landscape, i.e., the change in atomic positions vs the free-energy change. With such landscapes, the features of the reaction barriers solely determine chemical reactivities. The Marcus dissection of the barrier height (activation energy) on such a potential into the thermodynamically independent (intrinsic) and the thermodynamically dependent (Bell-Evans-Polanyi) contributions successfully models the interplay of reaction rate and driving force. This has led to the well-known and ubiquitously used reactivity paradigm of "kinetic versus thermodynamic control". However, an analogous dissection concept regarding the barrier width is absent. Here we define and outline the concept of intrinsic barrier width and the driving force effect on the barrier width and report experimental as well as theoretical studies to demonstrate their distinct roles. We present the idea of changing the barrier widths of conformational isomerizations of some simple aromatic carboxylic acids as models and use quantum mechanical tunneling (QMT) half-lives as a read-out for these changes because QMT is particularly sensitive to barrier widths. We demonstrate the distinct roles of the intrinsic and the thermodynamic contributions of the barrier width on QMT half-lives. This sheds light on resolving conflicting trends in chemical reactivities where barrier widths are relevant and allows us to draw some important conclusions about the general relevance of barrier widths, their qualitative definition, and the consequences for more complete descriptions of chemical reactions.
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Affiliation(s)
- Guanqi Qiu
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | - Peter R. Schreiner
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
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12
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Prado Merini M, Schleif T, Sander W. Heavy-Atom Tunneling in Bicyclo[4.1.0]hepta-2,4,6-trienes. Angew Chem Int Ed Engl 2023; 62:e202309717. [PMID: 37698374 DOI: 10.1002/anie.202309717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Revised: 09/11/2023] [Accepted: 09/12/2023] [Indexed: 09/13/2023]
Abstract
Heavy-atom tunneling limits the lifetime and observability of bicyclo[4.1.0]hepta-2,4,6-triene, a key intermediate in the rearrangement of phenylcarbene. Bicyclo[4.1.0]hepta-2,4,6-triene had been proposed as the primary intermediate of the rearrangement of phenylcarbene, but despite many efforts evaded its characterization even in cryogenic matrices. By introducing fluorine substituents into the ortho-positions of the phenyl ring of phenylcarbene, the highly strained cyclopropene 1,5-difluorobicyclo[4.1.0]hepta-2,4,6-triene becomes stable enough to be characterized in argon matrices. However, even at 3 K this cyclopropene is only metastable and rearranges via heavy-atom tunneling to the corresponding cycloheptatetraene. Calculations suggest that fluorination is necessary to slow down the tunneling rearrangement of the bicycloheptatriene. The parent bicycloheptatriene rapidly rearranges via heavy-atom tunneling and therefore cannot be detected under matrix isolation conditions.
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Affiliation(s)
- Melania Prado Merini
- Lehrstuhl für Organische Chemie II, Ruhr-Universität Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Tim Schleif
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, CT 06520, USA
| | - Wolfram Sander
- Lehrstuhl für Organische Chemie II, Ruhr-Universität Bochum, Universitätsstraße 150, 44801, Bochum, Germany
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13
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Madinah R, Rusydi F, Fadilla RN, Khoirunisa V, Boli LSP, Saputro AG, Hassan NH, Ahmad A. First-Principles Study of the Dispersion Effects in the Structures and Keto-Enol Tautomerization of Curcumin. ACS OMEGA 2023; 8:34022-34033. [PMID: 37744805 PMCID: PMC10515353 DOI: 10.1021/acsomega.3c04907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Accepted: 08/18/2023] [Indexed: 09/26/2023]
Abstract
Noncovalent interactions, such as dispersion, play a significant role in the stability of flexible molecules, such as curcumin. This study revealed the importance of dispersion correction in the structure and keto-enol tautomerization of curcumin, which has rarely been addressed in computational studies. We rigorously constructed all possible unique curcumin conformers in the enol and keto forms within the first-principles framework. Regardless of the different environments, we carefully explained the agreement between the computational geometry (in the gas phase) and the experimental measurement (in the polymorph) by using dispersion correction. The calculation results for the aqueous solution of conformational abundance, thermochemistry, and reaction kinetics support the experimental observations after considering the dispersion correction. The study also suggests a water-catalyzed mechanism for keto-enol tautomerization, where dispersion correction plays a role in decreasing the energy barrier and making the keto form thermochemically and kinetically favorable. Our results could be helpful in future computational studies to find a method for increasing the aqueous solubility of curcumin; hence, the potential of curcumin as a multifunctional medicine can be fully achieved.
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Affiliation(s)
- Roichatul Madinah
- Department
of Chemical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor 43600, Malaysia
- Research
Center for Quantum Engineering Design, Faculty of Science and Technology, Universitas Airlangga, Surabaya 60115, Indonesia
| | - Febdian Rusydi
- Research
Center for Quantum Engineering Design, Faculty of Science and Technology, Universitas Airlangga, Surabaya 60115, Indonesia
- Department
of Physics, Faculty of Science and Technology, Universitas Airlangga, Surabaya 60115, Indonesia
| | - Rizka N. Fadilla
- Research
Center for Quantum Engineering Design, Faculty of Science and Technology, Universitas Airlangga, Surabaya 60115, Indonesia
- Department
of Precision Engineering, Graduate School of Engineering, Osaka University, Osaka 565-0871, Japan
| | - Vera Khoirunisa
- Research
Center for Quantum Engineering Design, Faculty of Science and Technology, Universitas Airlangga, Surabaya 60115, Indonesia
- Department
of Engineering Physics, Institut Teknologi
Sumatera, Jl. Terusan Ryacudu, Lampung Selatan 35365, Indonesia
| | - Lusia S. P. Boli
- Research
Center for Quantum Engineering Design, Faculty of Science and Technology, Universitas Airlangga, Surabaya 60115, Indonesia
- Advanced
Functional Materials Research Group, Faculty of Industrial Technology, Institut Teknologi Bandung, Bandung 40132, Indonesia
- Physics Study
Program, Faculty of Mathematics and Natural Sciences, Universitas Jendral Soedirman, Purwokerto 53122, Indonesia
| | - Adhitya G. Saputro
- Advanced
Functional Materials Research Group, Faculty of Industrial Technology, Institut Teknologi Bandung, Bandung 40132, Indonesia
| | - Nur H. Hassan
- Department
of Chemical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor 43600, Malaysia
| | - Azizan Ahmad
- Department
of Chemical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor 43600, Malaysia
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14
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Šrut A, Lear BJ, Krewald V. The Marcus dimension: identifying the nuclear coordinate for electron transfer from ab initio calculations. Chem Sci 2023; 14:9213-9225. [PMID: 37655015 PMCID: PMC10466304 DOI: 10.1039/d3sc01402a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Accepted: 08/06/2023] [Indexed: 09/02/2023] Open
Abstract
The Marcus model forms the foundation for all modern discussion of electron transfer (ET). In this model, ET results in a change in diabatic potential energy surfaces, separated along an ET nuclear coordinate. This coordinate accounts for all nuclear motion that promotes electron transfer. It is usually assumed to be dominated by a collective asymmetric vibrational motion of the redox sites involved in the ET. However, this coordinate is rarely quantitatively specified. Instead, it remains a nebulous concept, rather than a tool for gaining true insight into the ET pathway. Herein, we describe an ab initio approach for quantifying the ET coordinate and demonstrate it for a series of dinitroradical anions. Using sampling methods at finite temperature combined with density functional theory calculations, we find that the electron transfer can be followed using the energy separation between potential energy surfaces and the extent of electron localization. The precise nuclear motion that leads to electron transfer is then obtained as a linear combination of normal modes. Once the coordinate is identified, we find that evolution along it results in a change in diabatic state and optical excitation energy, as predicted by the Marcus model. Thus, we conclude that a single dimension of the electron transfer described in Marcus-Hush theory can be described as a well-defined nuclear motion. Importantly, our approach allows the separation of the intrinsic electron transfer coordinate from other structural relaxations and environmental influences. Furthermore, the barrier separating the adiabatic minima was found to be sufficiently thin to enable heavy-atom tunneling in the ET process.
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Affiliation(s)
- Adam Šrut
- Department of Chemistry, Theoretical Chemistry, TU Darmstadt Peter-Grünberg-Straße 4 64287 Darmstadt Germany
| | - Benjamin J Lear
- Department of Chemistry, The Pennsylvania State University University Park PA 16802 USA
| | - Vera Krewald
- Department of Chemistry, Theoretical Chemistry, TU Darmstadt Peter-Grünberg-Straße 4 64287 Darmstadt Germany
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15
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Luo X, Yang D, He X, Wang S, Zhang D, Xu J, Pao CW, Chen JL, Lee JF, Cong H, Lan Y, Alhumade H, Cossy J, Bai R, Chen YH, Yi H, Lei A. Valve turning towards on-cycle in cobalt-catalyzed Negishi-type cross-coupling. Nat Commun 2023; 14:4638. [PMID: 37532729 PMCID: PMC10397345 DOI: 10.1038/s41467-023-40269-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 07/14/2023] [Indexed: 08/04/2023] Open
Abstract
Ligands and additives are often utilized to stabilize low-valent catalytic metal species experimentally, while their role in suppressing metal deposition has been less studied. Herein, an on-cycle mechanism is reported for CoCl2bpy2 catalyzed Negishi-type cross-coupling. A full catalytic cycle of this kind of reaction was elucidated by multiple spectroscopic studies. The solvent and ligand were found to be essential for the generation of catalytic active Co(I) species, among which acetonitrile and bipyridine ligand are resistant to the disproportionation events of Co(I). Investigations, based on Quick-X-Ray Absorption Fine Structure (Q-XAFS) spectroscopy, Electron Paramagnetic Resonance (EPR), IR allied with DFT calculations, allow comprehensive mechanistic insights that establish the structural information of the catalytic active cobalt species along with the whole catalytic Co(I)/Co(III) cycle. Moreover, the acetonitrile and bipyridine system can be further extended to the acylation, allylation, and benzylation of aryl zinc reagents, which present a broad substrate scope with a catalytic amount of Co salt. Overall, this work provides a basic mechanistic perspective for designing cobalt-catalyzed cross-coupling reactions.
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Affiliation(s)
- Xu Luo
- College of Chemistry and Molecular Sciences, the Institute for Advanced Studies (IAS), Wuhan University, Wuhan, 430072, P.R. China
| | - Dali Yang
- College of Chemistry and Molecular Sciences, the Institute for Advanced Studies (IAS), Wuhan University, Wuhan, 430072, P.R. China
| | - Xiaoqian He
- School of Chemistry and Chemical Engineering, Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing, 400030, P.R. China
| | - Shengchun Wang
- College of Chemistry and Molecular Sciences, the Institute for Advanced Studies (IAS), Wuhan University, Wuhan, 430072, P.R. China
| | - Dongchao Zhang
- College of Chemistry and Molecular Sciences, the Institute for Advanced Studies (IAS), Wuhan University, Wuhan, 430072, P.R. China
| | - Jiaxin Xu
- College of Chemistry and Molecular Sciences, the Institute for Advanced Studies (IAS), Wuhan University, Wuhan, 430072, P.R. China
| | - Chih-Wen Pao
- National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan
| | - Jeng-Lung Chen
- National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan
| | - Jyh-Fu Lee
- National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan
| | - Hengjiang Cong
- College of Chemistry and Molecular Sciences, the Institute for Advanced Studies (IAS), Wuhan University, Wuhan, 430072, P.R. China
| | - Yu Lan
- School of Chemistry and Chemical Engineering, Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing, 400030, P.R. China
| | - Hesham Alhumade
- K. A. CARE Energy Research and Innovation Center, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
- Department of Chemical and Materials Engineering, Faculty of Engineering, Center of Research Excellence in Renewable Energy and Power Systems, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
| | - Janine Cossy
- Molecular, Macromolecular Chemistry, and Materials, ESPCI Paris, CNRS, PSL University, 75005, Paris, France.
| | - Ruopeng Bai
- School of Chemistry and Chemical Engineering, Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing, 400030, P.R. China.
| | - Yi-Hung Chen
- College of Chemistry and Molecular Sciences, the Institute for Advanced Studies (IAS), Wuhan University, Wuhan, 430072, P.R. China.
| | - Hong Yi
- College of Chemistry and Molecular Sciences, the Institute for Advanced Studies (IAS), Wuhan University, Wuhan, 430072, P.R. China.
- Wuhan University Shenzhen Research Institute, 518057, Shenzhen, China.
| | - Aiwen Lei
- College of Chemistry and Molecular Sciences, the Institute for Advanced Studies (IAS), Wuhan University, Wuhan, 430072, P.R. China.
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, 200032, P.R. China.
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16
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Paul M, Thomulka T, Harnying W, Neudörfl JM, Adams CR, Martens J, Berden G, Oomens J, Meijer AJHM, Berkessel A, Schäfer M. Hydrogen Bonding Shuts Down Tunneling in Hydroxycarbenes: A Gas-Phase Study by Tandem-Mass Spectrometry, Infrared Ion Spectroscopy, and Theory. J Am Chem Soc 2023. [PMID: 37235775 DOI: 10.1021/jacs.3c01698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Hydroxycarbenes can be generated and structurally characterized in the gas phase by collision-induced decarboxylation of α-keto carboxylic acids, followed by infrared ion spectroscopy. Using this approach, we have shown earlier that quantum-mechanical hydrogen tunneling (QMHT) accounts for the isomerization of a charge-tagged phenylhydroxycarbene to the corresponding aldehyde in the gas phase and above room temperature. Herein, we report the results of our current study on aliphatic trialkylammonio-tagged systems. Quite unexpectedly, the flexible 3-(trimethylammonio)propylhydroxycarbene turned out to be stable─no H-shift to either aldehyde or enol occurred. As supported by density functional theory calculations, this novel QMHT inhibition is due to intramolecular H-bonding of a mildly acidic α-ammonio C-H bonds to the hydroxyl carbene's C-atom (C:···H-C). To further support this hypothesis, (4-quinuclidinyl)hydroxycarbenes were synthesized, whose rigid structure prevents this intramolecular H-bonding. The latter hydroxycarbenes underwent "regular" QMHT to the aldehyde at rates comparable to, e.g., methylhydroxycarbene studied by Schreiner et al. While QMHT has been shown for a number of biological H-shift processes, its inhibition by H-bonding disclosed here may serve for the stabilization of highly reactive intermediates such as carbenes, even as a mechanism for biasing intrinsic selectivity patterns.
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Affiliation(s)
- Mathias Paul
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Thomas Thomulka
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Wacharee Harnying
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Jörg-Martin Neudörfl
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Charlie R Adams
- Department of Chemistry, University of Sheffield, Sheffield S3 7HF, U.K
| | - Jonathan Martens
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
| | - Giel Berden
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
| | - Jos Oomens
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
- Van't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098 XH, The Netherlands
| | | | - Albrecht Berkessel
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Mathias Schäfer
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
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17
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Wang HD, Fu YL, Fu B, Fang W, Zhang DH. A highly accurate full-dimensional ab initio potential surface for the rearrangement of methylhydroxycarbene (H 3C-C-OH). Phys Chem Chem Phys 2023; 25:8117-8127. [PMID: 36876923 DOI: 10.1039/d3cp00312d] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
Abstract
We report here a full-dimensional machine learning global potential surface (PES) for the rearrangement of methylhydroxycarbene (H3C-C-OH, 1t). The PES is trained with the fundamental invariant neural network (FI-NN) method on 91 564 ab initio energies calculated at the UCCSD(T)-F12a/cc-pVTZ level of theory, covering three possible product channels. FI-NN PES has the correct symmetry properties with respect to permutation of four identical hydrogen atoms and is suitable for dynamics studies of the 1t rearrangement. The averaged root mean square error (RMSE) is 11.4 meV. Six important reaction pathways, as well as the energies and vibrational frequencies at the stationary geometries on these pathways are accurately preproduced by our FI-NN PES. To demonstrate the capacity of the PES, we calculated the rate coefficient of hydrogen migration in -CH3 (path A) and hydrogen migration of -OH (path B) with instanton theory on this PES. Our calculations predicted the half-life of 1t to be 95 min, which is excellent in agreement with experimental observations.
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Affiliation(s)
- Heng-Ding Wang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
| | - Yan-Lin Fu
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
| | - Bina Fu
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
| | - Wei Fang
- Fudan University, Shanghai, 200032, China.
| | - Dong H Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
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18
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Chen BW. Equilibrium and kinetic isotope effects in heterogeneous catalysis: A density functional theory perspective. CATAL COMMUN 2023. [DOI: 10.1016/j.catcom.2023.106654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023] Open
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19
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Ma Z, Yan Z, Li X, Chung LW. Quantum Tunneling in Reactions Modulated by External Electric Fields: Reactivity and Selectivity. J Phys Chem Lett 2023; 14:1124-1132. [PMID: 36705472 DOI: 10.1021/acs.jpclett.2c03461] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Quantum tunneling and external electric fields (EEFs) can promote some reactions. However, the synergetic effect of an EEF on a tunneling-involving reaction and its temperature-dependence is not very clear. In this study, we extensively investigated how EEFs affect three reactions that involve hydrogen- or (ground- and excited-state) carbon-tunneling using reliable DFT, DLPNO-CCSD(T1), and variational transition-state theory methods. Our study revealed that oriented EEFs can significantly reduce the barrier and corresponding barrier width (and vice versa) through more electrostatic stabilization in transition states. These EEF effects enhance the nontunneling and tunneling-involving rates. Such EEF effects also decrease the crossover temperatures and quantum tunneling contribution, albeit with lower and thinner barriers. Moreover, EEFs can modulate and switch on/off the tunneling-driven 1,2-H migration of hydroxycarbenes under cryogenic conditions. Furthermore, our study predicts for the first time that EEF/tunneling synergy can control the chemo- or site-selectivity of one molecule bearing two similar/same reactive sites.
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Affiliation(s)
- Zhifeng Ma
- Shenzhen Grubbs Institute, Department of Chemistry, and Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, 1088 Xueyuan Avenue, Shenzhen 518055, P. R. China
| | - Zeyin Yan
- Shenzhen Grubbs Institute, Department of Chemistry, and Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, 1088 Xueyuan Avenue, Shenzhen 518055, P. R. China
| | - Xin Li
- Shenzhen Grubbs Institute, Department of Chemistry, and Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, 1088 Xueyuan Avenue, Shenzhen 518055, P. R. China
| | - Lung Wa Chung
- Shenzhen Grubbs Institute, Department of Chemistry, and Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, 1088 Xueyuan Avenue, Shenzhen 518055, P. R. China
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20
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Lopes Jesus AJ, de Lucena Júnior JR, Fausto R, Reva I. Infrared Spectra and Phototransformations of meta-Fluorophenol Isolated in Argon and Nitrogen Matrices. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27238248. [PMID: 36500356 PMCID: PMC9735537 DOI: 10.3390/molecules27238248] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Revised: 11/18/2022] [Accepted: 11/21/2022] [Indexed: 11/29/2022]
Abstract
Monomers of meta-fluorophenol (mFP) were trapped from the gas phase into cryogenic argon and nitrogen matrices. The estimated relative energies of the two conformers are very close, and in the gas phase they have nearly equal populations. Due to the similarity of their structures (they only differ in the orientation of the OH group), the two conformers have also similar predicted vibrational signatures, which makes the vibrational characterization of the individual rotamers challenging. In the present work, it has been established that in an argon matrix only the most stable trans conformer of mFP exists (the OH group pointing away from the fluorine atom). On the other hand, the IR spectrum of mFP in a nitrogen matrix testifies to the simultaneous presence in this matrix of both the trans conformer and of the higher-energy cis conformer (the OH group pointing toward the fluorine atom), which is stabilized by interaction with the matrix gas host. We found that the exposition of the cryogenic N2 matrix to the Globar source of the infrared spectrometer affects the conformational populations. By collecting experimental spectra, either in the full mid-infrared range or only in the range below 2200 cm-1, we were able to reliably distinguish two sets of experimental bands originating from individual conformers. A comparison of the two sets of experimental bands with computed infrared spectra of the conformers allowed, for the first time, the unequivocal vibrational identification of each of them. The joint implementation of computational vibrational spectroscopy and matrix-isolation infrared spectroscopy proved to be a very accurate method of structural analysis. Some mechanistic insights into conformational isomerism (the quantum tunneling of hydrogen atom and vibrationally-induced conformational transformations) have been addressed. Finally, we also subjected matrix-isolated mFP to irradiations with UV light, and the phototransformations observed in these experiments are also described.
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Affiliation(s)
- A. J. Lopes Jesus
- CQC-IMS, Faculty of Pharmacy, University of Coimbra, 3004-295 Coimbra, Portugal
- Correspondence: (A.J.L.J.); (I.R.)
| | | | - Rui Fausto
- CQC-IMS, Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
| | - Igor Reva
- CQC-IMS, Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
- CIEPQPF, Department of Chemical Engineering, University of Coimbra, 3030-790 Coimbra, Portugal
- Correspondence: (A.J.L.J.); (I.R.)
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21
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Nunes CM, Roque JP, Doddipatla S, Wood SA, McMahon RJ, Fausto R. Simultaneous Tunneling Control in Conformer-Specific Reactions. J Am Chem Soc 2022; 144:20866-20874. [PMID: 36321916 PMCID: PMC9776521 DOI: 10.1021/jacs.2c09026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
We present here a new example of chemical reactivity governed by quantum tunneling, which also highlights the limitations of the classical theories. The syn and anti conformers of a triplet 2-formylphenylnitrene, generated in a nitrogen matrix, were found to spontaneously rearrange to the corresponding 2,1-benzisoxazole and imino-ketene, respectively. The kinetics of both transformations were measured at 10 and 20 K and found to be temperature-independent, providing clear evidence of concomitant tunneling reactions (heavy-atom and H-atom). Computations confirm the existence of these tunneling reaction pathways. Although the energy barrier between the nitrene conformers is lower than any of the observed reactions, no conformational interconversion was observed. These results demonstrate an unprecedented case of simultaneous tunneling control in conformer-specific reactions of the same chemical species. The product outcome is impossible to be rationalized by the conventional kinetic or thermodynamic control.
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Affiliation(s)
- Cláudio M. Nunes
- University
of Coimbra, CQC-IMS, Department of Chemistry, 3004-535 Coimbra, Portugal,
| | - José P.
L. Roque
- University
of Coimbra, CQC-IMS, Department of Chemistry, 3004-535 Coimbra, Portugal
| | - Srinivas Doddipatla
- University
of Coimbra, CQC-IMS, Department of Chemistry, 3004-535 Coimbra, Portugal
| | - Samuel A. Wood
- Department
of Chemistry, University of Wisconsin−Madison, Madison, Wisconsin 53706-1322, United States
| | - Robert J. McMahon
- Department
of Chemistry, University of Wisconsin−Madison, Madison, Wisconsin 53706-1322, United States
| | - Rui Fausto
- University
of Coimbra, CQC-IMS, Department of Chemistry, 3004-535 Coimbra, Portugal
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