Computational Assessment of the Three-Dimensional Configuration of Dissolved Organic Matter Chromophores and Influence on Absorption Spectra

Characterization of Natural Organic Matter and Humic Substance Isolates by Size Exclusion Chromatography following Reduction with Sodium Borohydride

Chemical reduction with sodium borohydride has been used for over four decades to probe the presence and function of carbonyl-containing moieties in dissolved organic matter (DOM). One of these structure-property relationships is the attenuation of UV-visible absorbance after borohydride reduction, an effect that has been observed universally across DOM of different origins. We previously demonstrated that DOM with similar bulk physicochemical properties exhibits bifurcating reactivity with borohydride depending on the source (i.e., soil vs. aquatic), as judged by the kinetics of fractional absorbance removal during reduction at a fixed borohydride:DOM mass ratio. This result and data from other studies suggest that a portion of borohydride-reducible chromophores in DOM may be inaccessible to the water solvent, explaining the incomplete absorbance attenuation even at very high borohydride mass excesses. Here, we study the reactivity of five DOM isolates with sodium borohydride via size exclusion chromatography coupled to total organic carbon, absorbance, and fluorescence detectors. Reduction with sodium borohydride resulted in quantifiable yet exceedingly small decreases in DOM molecular weight, suggesting that the reduction of carbonyl groups to alcohols does not markedly impact the DOM secondary structure. Interestingly, higher molecular weight DOM exhibited the most prominent changes in optical properties after reduction, suggesting that larger molecules contain a high proportion of borohydride-reducible moieties. Optical surrogates were inversely correlated to molecular weight across a single isolate, both native and reduced. However, the correlation broke down at lower molecular weights, wherein optical surrogates remained constant with continued decreases in elution volume, suggesting that there is an intrinsic lower limit to the ability of optical surrogates to capture further decreases in molecular weight. Overall, these results provide insights into the DOM structure and help inform future applications of sodium borohydride for studying the DOM source and reactivity.

Intermolecular Interactions Enhance the Light Absorption of a Methoxyphenol Constituent of Biomass Burning Emissions

Brown carbon (BrC) components of biomass burning organic aerosol (BBOA) absorb sunlight at visible wavelengths. However, it is not clear whether the total light absorption of this BrC is simply the sum of the contributions of the individual components or whether the components can bind noncovalently to give additional absorption through charge transfer. Here, intermolecular interactions between guaiacol and quinones (1,4-benzoquinone and 1,4-naphthoquinone) were identified in proxies of the nonpolar, water-insoluble phase of BBOA, using UV-vis spectroscopy. Guaiacol and its derivatives are some of the most abundant emissions of smoldering coniferous species. Enhanced light absorption occurred instantaneously upon mixing colorless guaiacol with either quinone in n-heptane and did not increase with time, in contrast to the absorbance changes that would be expected for a covalent product. This enhancement decreased by about 25% as the temperature increased from 303 to 323 K, consistent with exothermic association to give complexes, yielding enthalpies of complexation of -13.3 ± 0.6 and -12.3 ± 0.4 kJ mol-1 for guaiacol with benzoquinone and naphthoquinone, respectively. Enhancement was also observed upon gas-liquid partitioning of benzoquinone into thin films of guaiacol, for example, with a thickness of 20 μm. This multiphase processing, mimicking partitioning of quinones into liquid BBOA, produced absorption comparable to moderately absorbing BrC from other sources, suggestive of the atmospheric relevance of these interactions.

Predicting the Kinetics of Cu and Cd Release from Diverse Soil Dissolved Organic Matter: A Novel Hybrid Model Integrating Machine Learning with Mechanistic Kinetics Model

Kinetic release of trace metals from soil dissolved organic matter (DOM) to solution is the key process controlling the mobility and bioavailability of trace metals in soil environment. However, due to the complexity of soil DOM, predicting the reaction rates of trace metals with soil DOM from different sources remains challenging. In this study, we developed a novel hybrid model integrating machine learning with mechanistic kinetics model, which can quantitatively predict the release rates of Cu and Cd from diverse soil DOM based on their compositions and properties. Our model quantitatively demonstrated that the molecular compositions of DOM controlled metal release rates, which had more profound impact on Cu than Cd. Our modeling results also identified two key factors affecting metal release rates, in which high concentrations of Ca and Mg ions in DOM significantly decreased the release rates of Cu and Cd, and the reassociation reactions of metal ions with DOM became more significant with the release of metals from DOM. This work has provided a unified kinetic modeling framework combining both mechanistic and data-driven approaches, which offers a new perspective for developing predictive kinetics models and can be applied to different metals and DOM in dynamic environments.

Photodegradation of typical psychotropic drugs in the aquatic environment: a critical review

Continuous consumption combined with incomplete removal during wastewater treatment means residues of psychotropic drugs (PDs), including antidepressants, antipsychotics, antiepileptics and illicit drugs, are continuously entering the aquatic environment, where they have the potential to affect non-target organisms. Photochemical transformation is an important aspect to consider when evaluating the environmental persistence of PDs, particularly for those present in sunlit surface waters. This review summarizes the latest research on the photodegradation of typical PDs under environmentally relevant conditions. According to the analysis results, four classes of PDs discussed in this paper are influenced by direct and indirect photolysis. Indirect photodegradation has been more extensively studied for antidepressants and antiepileptics compared to antipsychotics and illicit drugs. Particularly, the photosensitization process of dissolved organic materials (DOM) in natural waters has received significant research attention due to its ubiquity and specificity. The direct photolysis pathway plays a less significant role, but it is still relevant for most PDs discussed in this paper. The photodegradation rates and pathways of PDs are influenced by various water constituents and parameters such as DOM, nitrate and pH value. The contradictory results reported in some studies can be attributed to differences in experimental conditions. Based on this analysis of the existing literature, the review also identifies several key aspects that warrant further research on PD photodegradation. These results and recommendations contribute to a better understanding of the environmental role of water matrixes and provide important new insights into the photochemical fate of PDs in aquatic environments.

Recent Developments on the Three-Dimensional Structure of Dissolved Organic Matter: Toward a Unified Description

Advancing a common understanding about the chemical composition, size, and three-dimensional (3D) structure of dissolved organic matter (DOM) is paramount to deciphering its impact on and involvement in environmental processes, such as the fate and transport of contaminants and carbon cycling. Traditionally, DOM has been described as a collection of solvent-separated molecules or macromolecules. More recently, DOM has been depicted as a "supramolecular assembly", a collection of individual molecules and associations of molecules held together by non-covalent interactions. The supramolecular assembly model has been broadly invoked to rationalize certain behaviors and properties of DOM, yet the complexity of DOM has made it difficult to fully unravel the nature and contributions of its intermolecular interactions. Discussed in this perspective is evidence regarding thermodynamic drivers of intermolecular associations, DOM molecular size, sorption of organic contaminants to DOM, and optical properties of DOM. While single observations may be rationalized by former structural models, such as the supramolecular assembly model, combined evidence shows that the 3D structure of DOM is best described by a mixed dynamic assembly model (MDAM). The MDAM depicts DOM as a collection of solvent-separated molecules and small, tightly knit assemblies held together by strong hydrogen bonds, which may form large assemblies through weak intermolecular interactions only at specific pH values, high ionic strength, or high DOM concentration.

Spectral fingerprints of DOM-tungsten interactions: Linking molecular binding to conformational changes

Tungsten (W), a widely used yet understudied emerging contaminant, forms oxyanions in aqueous environments, distinguishing it from conventional heavy metals. While dissolved organic matter (DOM) demonstrates considerable potential for W binding, DOM-W interactions remain largely unexplored. Of particular significance, yet frequently overlooked, are the conformational changes in DOM during W binding processes. This study proposes a novel theoretical framework integrating superposition and charge transfer models to elucidate the complexity of these interactions. By combining spectroscopic techniques and photophysical models, we revealed that aromatic compounds containing 1-3 rings, especially monocyclic aromatic protein-like components, exhibit high affinity for W (logK=3.74-4.00). Phenolic hydroxyls served as primary binding sites for W, with aromatic rings facilitating binding through π interactions. Importantly, W binding to aromatic compounds induced conformational changes in DOM, transitioning from a loosely aggregated state to a more compact configuration. These changes facilitated W encapsulation within DOM through the synergistic effects of hydrophobic interactions, hydrogen/π-hydrogen bonding and π-stacking, potentially leading to stable trapping of W. Two-dimensional correlation spectroscopy analysis elucidated the sequential encapsulation process, involving phenolic, aromatic carboxylic/aliphatic carboxylic, polysaccharides, and aliphatics. The intricate behavior of DOM-W binding profoundly reshapes DOM's conformation, subtly yet significantly orchestrating W's binding affinity, environmental transport, and bioavailability in aquatic ecosystems.

Photo-assisted conversion of tetracycline in regulated persulfate system: Multiple roles of natural dissolved organic matter

Advanced oxidation processes (AOPs) using persulfate system can effectively remove organic pollutants. However, dissolved organic matter (DOM) has multiple effects on AOPs efficiency, and the influence of DOMs from natural sources on AOPs is still unclear. In this study, we explored the effects of soil DOM (SDOM) and fertilizer DOM (FDOM) on tetracycline (TC) removal by persulfate systems. DOMs introduction decreased light transmittance, slightly increased the pH of the systems, and destroyed original adsorption-desorption equilibrium. SDOM promoted most reactive species generation in the initial stage, thus improving the initial TC degradation rate. However, introduction of SDOM and FDOM increased the final TC residual rate. FDOM produced more obvious inhibitory effects on TC degradation. The final TC residual rates in systems containing 7.5 and 15 mg L-1 FDOM (F7.5-TC-PS and F15-TC-PS, respectively) were 25.85 % and 25.52 %, respectively. The inhibitory effects of FDOM on TC degradation were related to the combination between TC and FDOM, with humic acid-like component in FDOM being the main contributor. Besides, the main components in DOMs underwent transformation in the persulfate systems. This study sought to provide insights into the regulatory effects of DOM on TC photo-assisted conversion by AOPs.

Molecular characteristics of dissolved organic matter regulate the binding and migration of tungsten in porous media

Tungsten (W) is an emerging contaminant that poses potential risks to both the environment and human health. While dissolved organic matter (DOM) can significantly influence the W's environmental behavior in natural aquifers, the mechanisms by which DOM's molecular structure and functional group diversity impact W binding and migration remain unclear. Using molecular weight-fractionated soil and sediment DOM (<1 kDa, 1-100 kDa, and 100 kDa-0.45 μm), this study systematically investigated the relationship between DOM molecular characteristics and tungstate (WO42-) binding properties using multiple spectroscopic methods, including FTIR, fluorescence spectroscopy and XPS. The migration behavior of WO42- in porous media was also investigated through quartz sand column experiments. Results revealed that approximately 75 % of W was controlled by DOM, with over 50 % binding to low molecular weight DOM (<1 kDa). Tungsten bound to medium-high molecular weight DOM (1-100 kDa, >100 kDa) showed a greater propensity for retention, with the >100 kDa fractions demonstrating stronger selective binding to W, exhibiting distribution coefficients (Kmd) of 6.11 L/g and 10.69 L/g, respectively. Further analysis indicated that W primarily binds with aromatic rings, phenolic hydroxyls, polysaccharides, and carboxyl groups in DOM, potentially affecting DOM structural stability and consequently influencing W migration characteristics. Free W migration in quartz sand was primarily controlled by Langmuir monolayer adsorption, leading to local enrichment (Da = 6.83, Rd = 86.98). When bound to DOM, W's migration ability significantly increased (Rd = 8-10), with adsorption shifting to a Freundlich multilayer model, primarily controlled by convective transport (Npe = 27-62> > 1.96), while adsorption effects weakened (Da ≈ 1). This study, for the first time, systematically reveals the regulatory mechanisms of DOM molecular characteristics on tungsten's environmental behavior. It offers crucial parameter support for constructing tungsten migration models and provides important guidance for tungsten pollution risk assessment and remediation strategies.

Cyanohydrin Equilibria Implicate Non-Aromatic Aldehydes in Photochemical Production of Oceanic Carbon Monoxide

Carbonyls have previously been dismissed as significant precursors for carbon monoxide (CO) photoproduction from natural chromophoric dissolved organic matter (CDOM). Here, we used hydrogen cyanide (HCN), which reacts with carbonyls to form photochemically inert cyanohydrins, as a probe to re-examine the role of carbonyls in CO photoproduction. Adding HCN to low-absorbance euphotic zone seawater decreased CO photoproduction. Modeling [HCN] (∼5 to 364 μM) vs the percent decrease in CO photoproduction (%CO↓) yielded carbonyl-cyanohydrin dissociation equilibrium constants, KD, and maximum %CO↓, %CO↓max values. Four Atlantic and Pacific seawater KDs (66.7 ± 19.6 μM) overlap aqueous aliphatic but not aromatic aldehyde KDs. Phenylacetaldehyde (PA) and other β,γ-unsaturated aldehydes are proposed as prototypical CO precursors. Direct photolysis of ∼10 nM PA can supply the measured daily production of HCN-sensitive CO at an open-ocean site near Bermuda. HCN's %CO↓max was 31 ± 2.5% in North Atlantic seawater vs the 13 ± 2.5% inhibition of CO photoproduction by borohydride, a dilemma since only borohydride affects most ketones. Borohydride also decreased CDOM absorption much more than did HCN. This puzzle probably reflects differing steric and solvation requirements in HCN- and borohydride-CDOM reactions. This study demonstrates cyanophilic aldehydes to be a significant source of open-ocean CO and reveals new clues regarding CDOM photochemistry mechanisms.

Role of Direct and Sensitized Photolysis in the Photomineralization of Dissolved Organic Matter and Model Chromophores to Carbon Dioxide

This study addresses the fundamental processes that drive the photomineralization of dissolved organic matter (DOM) to carbon dioxide (CO2), deconvoluting the role of direct and sensitized photolysis. Here, a suite of DOM isolates and model compounds were exposed to simulated sunlight in the presence of various physical and chemical quenchers to assess the magnitude, rate, and extent of direct and sensitized photomineralization to CO2. Results suggest that CO2 formation occurs in a biphasic kinetic system, with fast production occurring within the first 3 h, followed by slower production thereafter. Notably, phenol model chromophores were the highest CO2 formers and, when conjugated with carboxylic functional groups, exhibited a high efficiency for CO2 formation relative to absorbed light. Simple polycarboxylated aromatic compounds included in this study were shown to be resistant to photomineralization. Quencher results suggest that direct photolysis and excited triplet state sensitization may be largely responsible for CO2 photoproduction in DOM, while singlet oxygen and hydroxyl radical sensitization may play a limited role. After 3 h of irradiation, the CO2 formation rate significantly decreased, and the role of sensitized reactions in CO2 formation increased. Together, the results from this study advance the understanding of the fundamental reactions driving DOM photomineralization to CO2, which is an important part of the global carbon cycle.

Regular Tetrahedron Model for the Assessment of High-Resolution Mass Spectrometry Data of Four-Way Fractionated Dissolved Organic Matter

A regular tetrahedron model was established to pierce the fractionation of dissolved organic matter (DOM) among quaternary components by using high-resolution mass spectrometry. The model can stereoscopically visualize molecular formulas of DOM to show the preference to each component according to the position in a regular tetrahedron. A classification method was subsequently developed to divide molecular formulas into 15 categories related to fractionation ratios, the relative change of which was demonstrated to be convergent with the uncertainty of mass peak area. The practicality of the regular tetrahedron model was verified by seven kinds of sludge from waste leachate treatment and sewage wastewater treatment plants by using stratification of extracellular polymeric substances coupled with Orbitrap MS as an example, presenting the DOM chemodiversity in stratified sludge flocs. Sensitivity analysis proved that classification results were relatively stable with the perturbation of four model parameters. Multinomial logistic regression analysis could further help identify the effect of molecular properties on the fractionation of DOM based on the classification results of the regular tetrahedron model. This model offers a methodology for the assessment of specificity of sequential extraction on DOM from solid or semisolid components and simplifies the complex mathematical expression of fractionation coefficients for quaternary components.

Dissolved organic matter isolates obtained by solid phase extraction exhibit higher absorption and lower photo-reactivity: Effect of components

Notable differences in photo-physical and chemical properties were found between bulk water and solid phase extraction (SPE) isolates for dissolved organic matter (DOM). The moieties extracted using modified styrene divinylbenzene cartridges, which predominantly consist of conjugated aromatic molecules like humic acids, contribute mainly to light absorption but exhibit lower quantum yields of fluorescence and photo-produced reactive intermediates (PPRIs). Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) revealed lignin as the moieties displaying most significant variance in abundance. In Van Krevelen-Spearman plot, we observed molecules positively or negatively correlated with DOM's optical and photochemical properties (including SUVA254, steady-state concentrations of ·OH, 1O2 quantum yield, etc.) were confined to specific regions, which can be delineated using a threshold modified aromaticity index (AImod) of 0.3. Based on the relationships between optical properties and PPRI production, it is suggested that the energy gap between ground state and excited singlet state (△ES1→S0), governing the inner conversion rate, serves as a determinant for apparent quantum yield of PPRIs in DOM, with intra-molecular charge transfer (CT) interactions potentially playing a pivotal role. Regarding DOM's photoreactivity with pollutants, this study has revealed, for the first time, that protein/amino sugars/amino acids could act as antioxidant groups in addition to phenols on the photolysis of sulfadiazine. These findings provide valuable insights into DOM photochemistry and are expected to stimulate further research in this area.

Inferring the Molecular Basis for Dissolved Organic Matter Photochemical and Optical Properties

Despite the widespread use of photochemical and optical properties to characterize dissolved organic matter (DOM), a significant gap persists in our understanding of the relationship among these properties. This study infers the molecular basis for the optical and photochemical properties of DOM using a comprehensive framework and known structural moieties within DOM. Utilizing Suwannee River Fulvic Acid (SRFA) as a model DOM, carboxylated aromatics, phenols, and quinones were identified as dominant contributors to the absorbance spectra, and phenols, quinones, aldehydes, and ketones were identified as major contributors to radiative energy pathways. It was estimated that chromophores constitute ∼63% w/w of dissolved organic carbon in SRFA and ∼47% w/w of overall SRFA. Notably, estimations indicate the pool of fluorescent compounds and photosensitizing compounds in SRFA are likely distinct from each other at wavelengths below 400 nm. This perspective offers a practical tool to aid in the identification of probable chemical groups when interpreting optical and photochemical data and challenges the current "black box" thinking. Instead, DOM photochemical and optical properties can be closely estimated by assuming the DOM is composed of a mixture of individual compounds.

Unraveling the photochemical behavior of dissolved organic matter derived from hydrothermal carbonization process water: Insights from molecular transformation and photoactive species

Hydrothermal carbonization process water (HTPW) has been utilized as a substitute for chemical fertilizers in agricultural applications. However, the input of HTPW into paddy water, particularly the significant proportion of dissolved organic matter (DOM) in HTPW (DOM-HTPW), directly engages in photochemical transformations, a phenomenon often overlooked. This study observed a consistent decrease in humification (SUVA280, 7.7-53.9%) and aromaticity (SUVA254, 6.1-40.0%) of DOM-HTPW after irradiation. The primary active photobleaching components of DOM-HTPW varied depending on the feedstock, such as protein for chicken manure DOM-HTPW and lignin for rice straw DOM-HTPW. The photochemical activity of DOM-HTPW was augmented by its lower molecular weight and higher hydrophilic composition, particularly evident in chicken manure DOM-HTPW, which exhibited higher generation rates for 1O2 (35.1-37.1%), 3DOM* (32.8-43.9%), and O2•- (28.6-48.8%) as measured by molecular probes. DOM-HTPW effectively facilitated the phototransformation of tetracycline, with the contribution of O2•- being more significant than 3DOM* and 1O2. These findings shed new light on the understanding the photochemical processes of DOM-HTPW as exogenous DOM and the interconnected fate of contaminants in aquatic environments.

Multiscale computational simulation of pollutant behavior at water interfaces

The investigation of pollutant behavior at water interfaces is critical to understand pollution in aquatic systems. Computational methods allow us to overcome the limitations of experimental analysis, delivering valuable insights into the chemical mechanisms and structural characteristics of pollutant behavior at interfaces across a range of scales, from microscopic to mesoscopic. Quantum mechanics, all-atom molecular dynamics simulations, coarse-grained molecular dynamics simulations, and dissipative particle dynamics simulations represent diverse molecular interaction calculation methods that can effectively model pollutant behavior at environmental interfaces from atomic to mesoscopic scales. These methods provide a rich variety of information on pollutant interactions with water surfaces. This review synthesizes the advancements in applying typical computational methods to the formation, adsorption, binding, and catalytic conversion of pollutants at water interfaces. By drawing on recent advancements, we critically examine the current challenges and offer our perspective on future directions. This review seeks to advance our understanding of computational techniques for elucidating pollutant behavior at water interfaces, a critical aspect of water research.

Interpreting pH-Dependent Differential UV/VIS Absorbance Spectra to Characterize Carboxylic and Phenolic Chromophores in Natural Organic Matter

Natural organic matter (NOM) is critical for the biogeochemical cycles of energy and many elements in terrestrial and aquatic ecosystems, and protonation-active functional groups in NOM molecules, notably carboxylic and phenolic groups often mediate these critical environmental functions. Molecular heterogeneity, polydispersity and dynamic behavior of NOM complicate achieving an unambiguous description of its molecular properties and reactivity. This study demonstrates that differential ultraviolet-visible (UV/VIS) absorbance spectra (DAS) of NOM acquired at varying pH values exhibit several distinct features associated with the deprotonation of NOM molecules, independent of the environmental provenance of NOM (e.g., surface water, seawater, sediment, and wastewater). The protonation-active functionalities that contribute to the Gaussian distribution bands present in the DAS were identified here by comparing characteristic properties of the bands with the stoichiometries of NOM molecules ascertained by Ultrahigh-Resolution Fourier-Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS). The protonation-active individual chromophores universally present in NOM molecules were identified by a genetic molecular network analysis. The observed DAS features were closely modeled via superimposing DAS spectra of 51 individual protonation-active chromophores. Molecular orbital theory was applied to further interpret the deprotonation of these chromophores, their molecular structure, electron distribution, and electron transitions measured using DAS. The high sensitivity and easy implementation of the DAS approach allows using it as a powerful tool to quantify the molecular properties and reactivity of NOM at environmental concentrations.

Decoupling Optical Response and Photochemical Formation of Singlet Oxygen in Size Isolated Fractions of Ozonated Dissolved Organic Matter

The complex effects of ozonation on the photophysical and size-based properties of dissolved organic matter (DOM) were investigated using two DOM isolates, Suwannee River Fulvic Acid (SRFA) and Pony Lake Fulvic Acid (PLFA). A size exclusion chromatography system paired with absorbance, fluorescence, and total organic carbon detection was used to determine the fluorescence quantum yield (Φ_f) as a function of the apparent molecular weight (AMW). Size-based fractions of each isolate were collected and irradiated to measure singlet oxygen (¹O₂) quantum yield (Φ_1O2). Φ_f decreased with ozonation in low AMW fractions, while increasing in high AMW fractions. Φ_1O2 increased with ozone dose in low AMW fractions from ∼2 to ∼7% and ∼3 to ∼11% for PLFA and SRFA, respectively, indicating that these are the most photoreactive fractions of DOM. Decreases in Φ_f and concomitant increases in Φ_1O2 in low AMW fractions indicated that chemical transformations occurred, likely including the conversion of phenols to quinones, particularly in SRFA. Results further suggest that the photoactive and fluorescent fractions of DOM are likely independent pools of chromophores from different AMW fractions. In PLFA, a linear response in Φ_1O2, specific UV absorbance at wavelength 254 nm (SUVA₂₅₄), and Φ_f with ozonation indicated the equal distribution of ozone-reactive moieties.

Photodegradation of organic micropollutants in aquatic environment: Importance, factors and processes

Photochemical reactions widely occur in the aquatic environment and play fundamental roles in aquatic ecosystems. In particular, solar-induced photodegradation is efficient for many organic micropollutants (OMPs), especially those that cannot undergo hydrolysis or biodegradation, and thus can mitigate chemical pollution. Recent reports indicate that photodegradation may play a more important role than biodegradation in many OMP transformations in the aquatic environment. Photodegradation can be influenced by the water matrix such as pH, inorganic ions, and dissolved organic matter (DOM). The effect of the water matrix such as DOM on photodegradation is complex, and new insights concerning the disparate effects of DOM have recently been reported. In addition, the photodegradation process is also influenced by physical factors such as latitude, water depth, and temporal variations in sunlight as these factors determine the light conditions. However, it remains challenging to gain an overview of the importance of photodegradation in the aquatic environment because the reactions involved are diverse and complex. Therefore, this review provides a concise summary of the importance of photodegradation and the major processes related to the photodegradation of OMPs, with particular attention given to recent progress on the major reactions of DOM. In addition, major knowledge gaps in this field of environmental photochemistry are highlighted.

Unified Modeling Approach for Quantifying the Proton and Metal Binding Ability of Soil Dissolved Organic Matter

Soil dissolved organic matter (DOM) is composed of a mass of complex organic compounds in soil solutions and significantly affects a range of (bio)geochemical processes in soil environment. However, how the chemical complexity (i.e., heterogeneity and chemodiversity) of soil DOM molecules affects their proton and metal binding ability remains unclear, which limits our ability for predicting the environmental behavior of DOM and metals. In this study, we developed a unified modeling approach for quantifying the proton and metal binding ability of soil DOM based on Cu titration experiments, Fourier transform ion cyclotron resonance mass spectrometry data, and molecular modeling method. Although soil DOM samples from different regions have enormously heterogeneous and diverse properties, we found that the molecules of soil DOM can be divided into three representative groups according to their Cu binding capacity. Based on the molecular models for individual molecular groups and the relative contributions of each group in each soil DOM, we were able to further develop molecular models for all soil DOM to predict their molecular properties and proton and metal binding ability. Our results will help to develop mechanistic models for predicting the reactivity of soil DOM from various sources.

Fluorescence Quenching of Humic Substances and Natural Organic Matter by Nitroxide Free Radicals

Fluorescence spectroscopy is one of the most frequently used techniques for studying dissolved organic matter (DOM) in natural and engineered systems. However, the spatial distribution and fluorophores, including local and interacting states, within DOM's larger structure remains poorly understood. In this study, we used two nitroxide fluorescence quenchers to evaluate the chemical and spatial heterogeneity of DOM fluorophores. Several results from quenching experiments with cationic 4-amino-TEMPO (tempamine), including downward-curving Stern-Volmer plots and spectral dependent quenching, show that multiple emitting species contribute to the observed emission even at a single excitation wavelength. Furthermore, for DOM isolates of diverse geographic origins (soil vs aquatic) and isolation procedures (reverse osmosis vs humic substances), the maximum extent of quenching occurs on the red edge of the emission spectra. For soil humic substance isolates, the spectral dependent quenching was significant enough to affect a blue shift in the average emission wavelength. The same soil humic substance isolates whose emission spectra were blue shifted by tempamine quenching were also blue shifted by decreasing solution pH and decreasing solvent polarity, which suggests a role for anionic fluorophores (e.g., hydroxybenzoic acids) in long wavelength fluorescence. Finally, curvature in Stern-Volmer plots indicate that between 10 and 50% of emitting species detected by steady-state fluorescence are inaccessible to quenching by tempamine, suggesting that this fraction of fluorophores may be inaccessible to water solvent. Results from this study provide an assessment of the spatial distribution of fluorophores within DOM and help to reconcile prior studies on the role of solvent polarity and pH on DOM fluorescence.

Changes in light absorption and composition of chromophoric marine-dissolved organic matter across a microbial bloom

Marine chromophoric dissolved organic matter (m-CDOM) mediates many vital photochemical processes at the ocean's surface. Isolating m-CDOM within the chemical complexity of marine dissolved organic matter has remained an analytical challenge. The SeaSCAPE campaign, a large-scale mesocosm experiment, provided a unique opportunity to probe the in situ production of m-CDOM across phytoplankton and microbial blooms. Results from mass spectrometry coupled with UV-VIS spectroscopy reveal production of a chemodiverse set of compounds well-correlated with increases in absorbance after a bacterial bloom, indicative of autochthonous m-CDOM production. Notably, many of the absorbing compounds were found to be enriched in nitrogen, which may be essential to chromophore function. From these results, quinoids, porphyrins, flavones, and amide-like compounds were identified via structural analysis and may serve as important photosensitizers in the marine boundary layer. Overall, this study demonstrates a step forward in identifying and characterizing m-CDOM using temporal mesocosm data and integrated UV-VIS spectroscopy and mass spectrometry analyses.

Multiple Roles of Dissolved Organic Matter in Advanced Oxidation Processes

Advanced oxidation processes (AOPs) can degrade a wide range of trace organic contaminants (TrOCs) to improve the quality of potable water or discharged wastewater effluents. Their effectiveness is impacted, however, by the dissolved organic matter (DOM) that is ubiquitous in all water sources. During the application of an AOP, DOM can scavenge radicals and/or block light penetration, therefore impacting their effectiveness toward contaminant transformation. The multiple ways in which different types or sources of DOM can impact oxidative water purification processes are critically reviewed. DOM can inhibit the degradation of TrOCs, but it can also enhance the formation and reactivity of useful radicals for contaminants elimination and alter the transformation pathways of contaminants. An in-depth analysis highlights the inhibitory effect of DOM on the degradation efficiency of TrOCs based on DOM's structure and optical properties and its reactivity toward oxidants as well as the synergistic contribution of DOM to the transformation of TrOCs from the analysis of DOM's redox properties and DOM's transient intermediates. AOPs can alter DOM structure properties as well as and influence types, mechanisms, and extent of oxidation byproducts formation. Research needs are proposed to advance practical understanding of how DOM can be exploited to improve oxidative water purification.

Assessing the source of the photochemical formation of hydroxylating species from dissolved organic matter using model sensitizers

Dissolved organic matter (DOM) is ubiquitous in natural waters and can facilitate the chemical transformation of many contaminants through the photochemical production of reactive intermediates, such as singlet oxygen (¹O₂), excited triplet state DOM (³DOM*), and hydroxylating species (˙OH and other intermediates of similar reaction chemistry). The formation mechanism of most reactive intermediates is well understood, but this is not the case for the formation of hydroxylating species from DOM. To investigate this chemistry, DOM model sensitizers were irradiated with two different probe compounds (benzene and benzoic acid) at two irradiation wavelengths (254 and 320 nm). The ability of DOM model sensitizers to hydroxylate these arene probes was assessed by measuring rates of formation of the hydroxylated probe compounds (phenol and salicylic acid). Multiple classes of model sensitizers were tested, including quinones, hydroxybenzoic acids, aromatic ketones, and other triplet forming species. Of these classes of model sensitizers, only quinones and hydroxybenzoic acids had a hydroxylating capacity. Methanol quenching experiments were used to assess the reactivity of hydroxylating species. These results have several implications for the systems tested. First, they suggest that the hydroxylating intermediate produced from hydroxybenzoic acid photolysis may not be hydroxyl radical, but a different hydroxylating species. Also, these data prompted investigation of whether quinone photoproducts have a hydroxylating capacity. These results confirm that hydroxybenzoic acids and quinones are important to the photochemical production of hydroxylating species from DOM, but the mechanism by which this occurs for these classes of sensitizers is still elusive.

Unsupervised Structural Classification of Dissolved Organic Matter Based on Fragmentation Pathways

Dissolved organic matter (DOM) is considered an essential component of the Earth's ecological and biogeochemical processes. Structural information of DOM components at the molecular level remains one of the most extraordinary analytical challenges. Advances in determination of chemical formulas from the molecular studies of DOM have provided limited indications on structural signatures and potential reaction pathways. In this work, we extend the structural characterization of a wetland DOM sample using precursor and fragment molecular ions obtained by a sequential electrospray ionization-Fourier transform-ion cyclotron resonance tandem mass spectrometry (ESI-FT-ICR CASI-CID MS/MS) approach. The DOM chemical complexity resulted in near 900 precursors (P) and 24 000 fragment (F) molecular ions over a small m/z 261-477 range. The DOM structural content was dissected into families of structurally connected precursors based on neutral mass loss patterns (Pn-1 + F1:n + C) across the two-dimensional (2D) MS/MS space. This workflow identified over 1900 structural families of DOM compounds based on a precursor and neutral loss (H2O, CH4O, and CO2). The inspection of structural families showed a high degree of isomeric content (numerous identical fragmentation pathways), not discriminable with sole precursor ion analysis. The connectivity map of structural families allows for the visualization of potential biogeochemical processes that DOM undergoes throughout its lifetime. This study illustrates that integrating effective computational tools on a comprehensive high-resolution mass fragmentation strategy further enables the DOM structural characterization.

Computational Calculation of Dissolved Organic Matter Absorption Spectra

The absorption spectrum of dissolved organic matter (DOM) is a topic of interest to environmental scientists and engineers as it can be used to assess both the concentration and physicochemical properties of DOM. In this study, the UV-vis spectra for DOM model compounds were calculated using time-dependent density functional theory. Summing these individual spectra, it was possible to re-create the observed exponential shape of the DOM absorption spectra. Additionally, by predicting the effects of sodium borohydride reduction on the model compounds and then calculating the UV-vis absorbance spectra of the reduced compounds, it was also possible to correctly predict the effects of borohydride reduction on DOM absorbance spectra with a relatively larger decrease in absorbance at longer wavelengths. The contribution of charge-transfer (CT) interactions to DOM absorption was also evaluated, and the calculations showed that intra-molecular CT interactions could take place, while inter-molecular CT interactions were proposed to be less likely to contribute.

Graph Theoretic Approach for the Analysis of Comprehensive Mass-Spectrometry (MS/MS) Data of Dissolved Organic Matter

Dissolved organic matter (DOM) is a highly complex mixture of organic substances found in aquatic ecosystems. This mixture results from the degradation of primary producers within the ecosystem, groundwater, and the surrounding terrestrial sources. Understanding the chemical structure of DOM is crucial to assessing its impact on aquatic ecosystems. Although multiple studies have addressed the complexity of DOM, the molecular structure of this set of compounds remains unclear. In this work, we present a novel computational framework "Graph-DOM," to assess the comprehensive fragmentation data obtained from the analysis of DOM using the Data Independent Fragmentation strategy with ESI-FT-ICR MS/MS enabling better understanding of the structural complexity of DOM. Graph-DOM uses graph algorithms to dissect a compiled output file obtained from processing hundreds of ultra-high-resolution fragment spectra. Over half a million ordered fragmentation pathways were computed for 764 isolated precursor ions assuming up to seven vector segments categorized as neutral losses (CH2, CH3, O, CH4, H2O, CO, and CO2). Families of structurally related molecules were identified using pathway overlaps, and output files compatible with network visualization software (e.g., Cytoscape) were also generated. Graph-DOM is able to efficiently process all the pathways to discover families within only a few minutes with adjustable parameters for overlap length of fragmentation pathways as well as configuring low abundance CHOS, CHON, and CHONS compounds. Graph-DOM is available at https://github.com/Usman095/Graph-DOM.

Critical assessment of an equilibrium-based method to study the binding of waterborne organic contaminants to natural dissolved organic matter (DOM)

Dissolved organic matter (DOM) can play a major role in determining availability of pollutants to aquatic biota. Equilibrium dialysis is the most commonly used method to assess the interaction between DOM and organic contaminants. However, results obtained through this method can be affected by confounding factors linked to the diffusion of DOM through the membrane or the interaction of DOM and/or the compounds with the membrane itself. In this study, we propose an improved experimental approach, where highly hydrophilic cellulose-ester membranes with small molecular cut-off (100-500 Da) were used to overcome some of these hindrances. The performance of the method to determine the binding of a commonly used moderately hydrophobic herbicide (Isoproturon - ISU) with natural DOM was critically evaluated through a set of quality assurance criteria, across a range of DOM concentrations and pH conditions. DOM trans-membrane diffusion was prevented by the smaller pore size of the dialysis membrane. Good measurement reproducibility, mass balance closure, and successful trans-membrane equilibrium of ISU were obtained. ISU showed relatively low affinity with DOM (log K_DOC 1-2 L g^-1), which was significantly influenced by varying pH and DOM concentration. An alternative membrane may be needed for higher pH conditions as the greater adsorption effect blurred the observation of trans-membrane equilibrium and confounding mass balance closure. The paper makes recommendations on how to avoid measurement artefacts, while considering criteria for the expected mass distribution of compounds at equilibrium and for sorption onto the membrane and surfaces of the experimental units.

Fluorophores in surface freshwaters: importance, likely structures, and possible impacts of climate change

Fluorescence spectroscopy is one of the most useful techniques currently available for the characterisation of organic matter in natural water samples, because it combines easy availability of instrumentation, high sensitivity and limited requirements for sample treatment. The main fluorophores that can be found in natural waters are usually proteins (and/or free amino acids) and humic substances (humic and fulvic acids). The identification of these fluorescent compounds in water samples helps to obtain information about, among others, biological activity in the water body, possible transport of organic matter from soil, and the phenomenon of photobleaching that decreases both the absorbance and (usually) the fluorescence of natural organic matter. Interestingly, all these phenomena can be affected by climate change, which could alter to different extents the ratio between aquagenic and pedogenic fluorophores. Several events induced by warming in natural waters (and especially lake water) could enhance algal growth, thereby also enhancing the production of aquagenic organic matter. Intense precipitation events could increase the export of pedogenic material to surface waters, while photobleaching would be enhanced in the epilimnion of lakes when summer stratification becomes longer and more stable because of higher temperatures. Interestingly, photobleaching affects humic substances to a higher extent compared to protein-like material, thus protein fluorescence signals could be more preserved in stratified waters.

Reductive Transformation of 3-Nitro-1,2,4-triazol-5-one (NTO) by Leonardite Humic Acid and Anthraquinone-2,6-disulfonate (AQDS)

3-Nitro-1,2,4-triazol-5-one (NTO) is a major and the most water-soluble constituent in the insensitive munition formulations IMX-101 and IMX-104. While NTO is known to undergo redox reactions in soils, its reaction with soil humic acid has not been evaluated. We studied NTO reduction by anthraquinone-2,6-disulfonate (AQDS) and Leonardite humic acid (LHA) reduced with dithionite. Both LHA and AQDS reduced NTO to 3-amino-1,2,4-triazol-5-one (ATO), stoichiometrically at alkaline pH and partially (50-60%) at pH ≤ 6.5. Due to NTO and hydroquinone speciation, the pseudo-first-order rate constants (k_Obs) varied by 3 orders of magnitude from pH 1.5 to 12.5 but remained constant from pH 4 to 10. This distinct pH dependency of k_Obs suggests that NTO reactivity decreases upon deprotonation and offsets the increasing AQDS reactivity with pH. The reduction of NTO by LHA deviated continuously from first-order behavior for >600 h. The extent of reduction increased with pH and LHA electron content, likely due to greater reactivity of and/or accessibility to hydroquinone groups. Only a fraction of the electrons stored in LHA was utilized for NTO reduction. Electron balance analysis and LHA redox potential profile suggest that the physical conformation of LHA kinetically limited NTO access to hydroquinone groups. This study demonstrates the importance of carbonaceous materials in controlling the environmental fate of NTO.

Relationships between the Physicochemical Properties of Dissolved Organic Matter and Its Reaction with Sodium Borohydride

The reaction of dissolved organic matter (DOM) with sodium borohydride has been used to understand the geographic origin of DOM and investigate the photophysical model underlying DOM's optical properties. However, the physicochemical properties of DOM (e.g., molecular size and charge) that influence the kinetics and ultimate reducibility of DOM by borohydride remain poorly characterized. Herein, we studied the kinetics of DOM-borohydride reactions by recording absorbance and fluorescence spectra at a high temporal frequency (every ∼10 min for 24 h) for a diverse set of DOM isolates of aquatic and soil origin. The reducibility of DOM by sodium borohydride (as judged by relative removal of initial absorbance) varied appreciably among the DOM samples studied, with soil humic substances being less reducible than aquatic humic substances and natural organic matter. While statistically significant correlations were found between the reducibility of DOM and descriptors of molecular size, these descriptors were not able to differentiate the reducibility of soil versus aquatic DOM isolates that had similar bulk properties. Thus, it appears that the extent of absorbance removal by borohydride is largely driven by the origin of the humic substance isolate (aquatic vs soil) instead of molecular size or charge. Borohydride reduction resulted in increased fluorescence emission across UV and visible excitation wavelengths. However, the enhanced emission at visible excitation decreased over a time period of hours to days, suggesting that reduction of an important subset of DOM chromophores is reversible. This reversibility in fluorescence emission is consistent with the small role of quinones in the absorbance of DOM but suggests a more important role for quinone-containing charge-transfer contacts in the fluorescence of DOM, particularly at visible excitation wavelengths.

Toward a microscopic model of light absorbing dissolved organic compounds in aqueous environments: theoretical and experimental study

Water systems often contain complex macromolecular systems that absorb light. In marine environments, these light absorbing components are often at the air-water interface and can participate in the chemistry of the atmosphere in ways that are poorly understood. Understanding the photochemistry and photophysics of these systems represents a major challenge since their composition and structures are not unique. In this study, we present a successful microscopic model of this light absorbing macromolecular species termed "marine derived chromophoric dissolved organic matter" or "m-CDOM" in water. The approach taken involves molecular dynamics simulations in the ground state using on the fly Density Functional Tight-Binding (DFTB) electronic structure theory; Time Dependent DFTB (TD-DFTB) calculations of excited states, and experimental measurements of the optical absorption spectra in aqueous solution. The theoretical hydrated model shows key features seen in the experimental data for a collected m-CDOM sample. As will be discussed, insights from the model are: (i) the low-energy A-band (at 410 nm) is due to the carbon chains combined with the diol- and the oxy-groups present in the structure; (ii) the weak B-band (at 320-360 nm) appears due to the contribution of the ionized speciated form of m-CDOM; and (iii) the higher-energy C-band (at 280 nm) is due to the two fused ring system. Thus, this is a two-speciated formed model. Although a relatively simple system, these calculations represent an important step in understanding light absorbing compounds found in nature and the search for other microscopic models of related materials remains of major interest.