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Dong Y, Yang J, Wang R, Zhou B, Zhang M, Zheng G, Zhou L. The heading stage: A critical period for schwertmannite in reducing arsenic accumulation in rice (Oryza sativa L.). J Environ Sci (China) 2025; 154:602-614. [PMID: 40049900 DOI: 10.1016/j.jes.2024.08.025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 08/17/2024] [Accepted: 08/19/2024] [Indexed: 05/13/2025]
Abstract
Schwertmannite, a common iron-derived mineral, is known for its high efficiency in adsorbing As from water and reducing the mobility and availability of As in soils. However, few studies have examined the critical period for the effectiveness of schwertmannite in hindering As uptake by rice plants, particularly its impact on the uptake and transport of As across different growth stages of rice. In this study, hydroponic experiments were performed to explore the absorption and translocation of As (500 µg/L As(III) or As(V)), when combined with schwertmannite, in rice during all growth stages. The results showed that As concentration in roots, stems and leaves increased with rice growth, while the addition of schwertmannite reduced the As concentration in all parts of rice, compared to the control without schwertmannite. Besides, schwertmannite application mitigated the harmful impact of As on rice yield, and reduced As levels in grains by 66 %-90 % compared to treatments with only As(III) or As(V). The heading stage is identified as a critical period for applying schwertmannite to reduce As uptake in rice. Specifically, during the heading stages, the plants uptake 85 %-91 % of the As contents in the absence of schwertmannite. However, adding schwertmannite retained about 84 %-90 % of As content, significantly reducing its absorption by rice plants at this stage. Therefore, maintaining As adsorption by schwertmannite up to the heading stage is beneficial to effectively reduce As uptake in rice and lower As concentration in rice grains.
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Affiliation(s)
- Yan Dong
- Department of Environmental Engineering, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Jiawei Yang
- Department of Environmental Engineering, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Ru Wang
- Department of Environmental Engineering, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Bo Zhou
- Department of Environmental Engineering, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Mingjiang Zhang
- Department of Environmental Engineering, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Guanyu Zheng
- Department of Environmental Engineering, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing 210095, China.
| | - Lixiang Zhou
- Department of Environmental Engineering, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing 210095, China.
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2
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Liu Q, Zhao L, Cao Y, Li D, Shi H, Wu Z, Li F, Wen D, Wang X. New concerns about arsenic contamination in agricultural fields: an in-depth understanding of the occurrence and regulatory strategies for rice straighthead disease. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2025; 226:110014. [PMID: 40412228 DOI: 10.1016/j.plaphy.2025.110014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2024] [Revised: 05/03/2025] [Accepted: 05/10/2025] [Indexed: 05/27/2025]
Abstract
Rice, a pivotal staple crop globally, faces a significant threat from straighthead disease, a pervasive physiological disorder that can diminish or obliterate yields, thereby jeopardizing food security. Currently, it is established that dimethylarsinic acid (DMA), a form of organic arsenic (As) commonly found in paddy fields, is the causal agent inducing rice straighthead disease. However, a systematic understanding of the mechanisms underlying DMA absorption, transport, toxicity, and the induction of straighthead disease remains lacking, as do effective methods for disease prevention and control. This review introduces the incidence of straighthead disease caused by DMA and delves into the potential physiological mechanisms. It synthesizes the factors influencing the uptake of methylated As and their association with straighthead disease in rice. The efficient translocation of DMA from roots to shoots, coupled with its high oxidative toxicity, leads to the manifestation of straighthead disease. Hydrogen peroxide appears to serve as a critical signaling molecule under DMA stress, elevating cell wall pectin levels and inhibiting cell expansion, leading to deformed panicles in diseased rice. Agricultural strategies aimed at diminishing the accumulation of methylated As in rice, such as intermittent flooding, minimizing organic matter input, applying chemical amendments, selecting varieties with low DMA accumulation, and employing bioremediation techniques, could mitigate straighthead disease. This review aims to heighten awareness of methylated As toxicity and straighthead disease, providing a foundational reference to guide future efforts in disease management within rice cultivation.
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Affiliation(s)
- Qinghui Liu
- Institute of Quality Standard and Monitoring Technology for Agro-Products, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China; Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou, 510640, China; Laboratory of Quality & Safety Risk Assessment for Agro-Products (Guangzhou), Ministry of Agriculture and Rural Affairs, Guangzhou, 510640, China.
| | - Li Zhao
- China Water Resources Pearl River Planning Surveying & Designing Co., Ltd., Guangzhou, 510610, China.
| | - Yiran Cao
- Institute of Quality Standard and Monitoring Technology for Agro-Products, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China; Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou, 510640, China; Laboratory of Quality & Safety Risk Assessment for Agro-Products (Guangzhou), Ministry of Agriculture and Rural Affairs, Guangzhou, 510640, China.
| | - Dongqin Li
- Institute of Quality Standard and Monitoring Technology for Agro-Products, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China; Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou, 510640, China; Laboratory of Quality & Safety Risk Assessment for Agro-Products (Guangzhou), Ministry of Agriculture and Rural Affairs, Guangzhou, 510640, China.
| | - Hanzhi Shi
- Institute of Quality Standard and Monitoring Technology for Agro-Products, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China; Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou, 510640, China; Laboratory of Quality & Safety Risk Assessment for Agro-Products (Guangzhou), Ministry of Agriculture and Rural Affairs, Guangzhou, 510640, China.
| | - Zhichao Wu
- Institute of Quality Standard and Monitoring Technology for Agro-Products, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China; Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou, 510640, China; Laboratory of Quality & Safety Risk Assessment for Agro-Products (Guangzhou), Ministry of Agriculture and Rural Affairs, Guangzhou, 510640, China.
| | - Furong Li
- Institute of Quality Standard and Monitoring Technology for Agro-Products, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China; Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou, 510640, China; Laboratory of Quality & Safety Risk Assessment for Agro-Products (Guangzhou), Ministry of Agriculture and Rural Affairs, Guangzhou, 510640, China.
| | - Dian Wen
- Institute of Quality Standard and Monitoring Technology for Agro-Products, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China; Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou, 510640, China; Laboratory of Quality & Safety Risk Assessment for Agro-Products (Guangzhou), Ministry of Agriculture and Rural Affairs, Guangzhou, 510640, China.
| | - Xu Wang
- Institute of Quality Standard and Monitoring Technology for Agro-Products, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China; Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou, 510640, China; Laboratory of Quality & Safety Risk Assessment for Agro-Products (Guangzhou), Ministry of Agriculture and Rural Affairs, Guangzhou, 510640, China.
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Gao ZY, Zhao XD, Chen C, Zhao FJ, Zhang SY. Paddy Soil Flooding and Nonflooding Affect the Transcriptional Activity of Arsenic Methylation and Demethylation Communities. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025; 59:3548-3561. [PMID: 39932948 DOI: 10.1021/acs.est.4c08620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/13/2025]
Abstract
The intermediate product methylarsenite [MMA(III)] of arsenic (As) methylation can be methylated to dimethylarsenate (DMA), which causes rice straighthead disease via the As methylation enzyme (ArsM), demethylated to arsenite via the As demethylation enzyme (ArsI), or excreted from cells via the MMA(III) efflux enzyme (ArsP). Whereas As methylation is commonly reported in flooded soils, As demethylation is mostly mediated by aerobes. We used custom-built ROCker models (accuracies of 99.7-99.9%) to quantify the short-read sequences carrying As genes and investigate the variations in the transcriptional activity of the arsM, arsI, and arsP genes in flooded and nonflooded paddy soils. We revealed significantly (p < 0.05) greater transcriptional activity of the arsM and arsP genes in flooded than nonflooded soils, whereas the transcriptional activity of the arsI genes was comparable. MMA(III) demethylation in flooded soils is possibly coupled with denitrification, as revealed by the significantly (p < 0.05) positively correlated genes in terms of transcriptional activity. Moreover, we showed that microbes coexpressing the arsM and arsI genes were dominated by Actinomycetota and Pseudomonadota. This study sheds light on the active microbial communities involved in As methylation and demethylation in paddy soils and provides insights into the prevention of rice straighthead disease.
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Affiliation(s)
- Zi-Yu Gao
- School of Ecological and Environmental Sciences, East China Normal University, 200241 Shanghai, China
| | - Xin-Di Zhao
- School of Ecological and Environmental Sciences, East China Normal University, 200241 Shanghai, China
| | - Chuan Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, 210095 Nanjing, China
| | - Fang-Jie Zhao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, 210095 Nanjing, China
| | - Si-Yu Zhang
- School of Ecological and Environmental Sciences, East China Normal University, 200241 Shanghai, China
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Kong S, Luo T, Xue L, Zou Y, Dai S, He D. Nitrogen, sulfur, iron, and microbial communities co-shape the seasonal biogeochemical behaviors of As and Sb in coastal tidal flat wetlands associated with rivers. JOURNAL OF HAZARDOUS MATERIALS 2025; 484:136730. [PMID: 39637813 DOI: 10.1016/j.jhazmat.2024.136730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2024] [Revised: 11/22/2024] [Accepted: 11/29/2024] [Indexed: 12/07/2024]
Abstract
Arsenic (As) and antimony (Sb) are affected by complex biogeochemical processes in coastal ecosystems. However, the influence of N, S, Fe, and microbial communities on the biogeochemistry of As and Sb in coastal tidal flat wetlands remain uncertain, particularly when rivers flow into these areas. This study combined diffusive gradients in the thin-film technique with high-throughput sequencing to investigate the release and vertical distribution of As and Sb in river and coastal tidal flat wetland sediments. The results indicated a distinct stratification phenomenon in the As release at depths ranging from 20 mm to -150 mm. At river sites, the release of As occurred in the upper layer (above -40 mm), with peak values of 4.3 and 9.3 μg/L at HS and SY sites in summer, respectively, likely due to anaerobic ammonium oxidation. In the lower layer (below -40 mm), both As and Sb were released, and this was possibly due to Fe reduction. However, at the coastal tidal flat sites, the release of As and Sb may have been driven by anaerobic ammonium oxidation, dissimilatory nitrate reduction to ammonium, sulfate reduction, and Fe reduction. At the river sites, As exhibited increased activity during the summer, and the residual forms were converted more easily into mobile forms. Sb remained relatively stable during both winter and summer. Conversely, both As and Sb primarily existed in residual forms and exhibited higher stability during summer in the coastal tidal flat sites. The microbial phyla Nitrospirota (3.6-7.0 %) and Acidobacteriota (9.5-10.2 %) were more prevalent at the river sites, whereas Desulfobacterota (8.8-12.0 %) and Firmicutes (0.13-27.9 %) were more prevalent at the coastal tidal flat sites. The bacterial genera involved in the N, S, and Fe transformation processes differed between the two sites, and they were primarily Thiobacillus, Limnobacter, and Sulfurovum at the river sites and Sva1033, Anaeromyxobacter, and Sva0485 at the coastal tidal flat sites. In this study, the microorganisms that mediated N, S, and Fe complex processes at various depths in the sediment-water interface were decoupled to elucidate the effect of these processes on the biogeochemical behavior of As and Sb as they move from rivers to coastal tidal flat wetlands.
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Affiliation(s)
- Shen Kong
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China; Jiangsu Province Ecology and Environment Protection Key Laboratory of Ecology and Pollution Control of Coastal Wetlands, Yancheng 224051, China
| | - Ting Luo
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China; Jiangsu Province Ecology and Environment Protection Key Laboratory of Ecology and Pollution Control of Coastal Wetlands, Yancheng 224051, China.
| | - Lili Xue
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China; Jiangsu Province Ecology and Environment Protection Key Laboratory of Ecology and Pollution Control of Coastal Wetlands, Yancheng 224051, China
| | - Yang Zou
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China; Jiangsu Province Ecology and Environment Protection Key Laboratory of Ecology and Pollution Control of Coastal Wetlands, Yancheng 224051, China
| | - Shijing Dai
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China; Jiangsu Province Ecology and Environment Protection Key Laboratory of Ecology and Pollution Control of Coastal Wetlands, Yancheng 224051, China
| | - Dongmei He
- Jiangsu Academy of Forestry, Nanjing 211153, China; Yancheng Coastal Wetland Ecosystem National Research Station, Yancheng 224136, China
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Zhang SY, Liu ZT, Zhao XD, Gao ZY, Jiang O, Li J, Li X, Kappler A, Xu J, Tang X. Lignin and Peptide Promote the Abundance and Activity of Arsenic Methylation Microbes in Paddy Soils. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025; 59:2541-2553. [PMID: 39885735 DOI: 10.1021/acs.est.4c10809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2025]
Abstract
Rice physiological straighthead disease is induced by microbially mediated arsenic methylation and usually regionally distributed in paddy soils. However, the biogeochemical mechanism underlying the geographic distribution of microbial communities harboring methylating genes (arsM) remains unclear. Herein, we revealed significant (p = 0.001) differences in the arsM communities in different regions of Chinese paddy soils at the continental scale. Moreover, a positive correlation between the diversity of arsM communities and the chemodiversity of soil dissolved organic matter (DOM) was revealed. Among the different DOM components, lignin- and peptide-like DOM are the most important DOM components impacting the abundance and diversity of arsM communities. Metatranscriptomic analyses of 18 selected paddy soil samples revealed that the expression of the arsM gene increased with increasing soil lignin and peptide contents. Compared with the control, the addition of lignin and peptide significantly (p < 0.05) increased the methylated As concentration in the incubated paddy soils. Communities harboring arsM genes belonging to the phyla Chloroflexota, Verrucomicrobiota, Deltaproteobacteria, Thermodesulfobacteriota, and Ignavibacteriota mostly dominated in paddy soils with relatively high lignin and peptide contents. This study highlights the correlation between the diversity of DOM and arsM communities in paddy soils and provides mechanistic information for soil arsenic contamination control and sustainable rice production.
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Affiliation(s)
- Si-Yu Zhang
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Zi-Teng Liu
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Xin-Di Zhao
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Zi-Yu Gao
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Ouyuan Jiang
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Jie Li
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xiaoming Li
- Key Laboratory of Drinking Water Science and Technology, Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- University of Chinese Academy of Sciences, Beijing 101408, China
| | - Andreas Kappler
- Department of Geosciences, University of Tübingen, Tübingen 72076, Germany
| | - Jianming Xu
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xianjin Tang
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
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Jung GY, Park JH, Han YS, Kim SJ. Microbial changes, including methanogens, influenced by arsenic speciation in anaerobic wetland environments. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2025; 375:124370. [PMID: 39899920 DOI: 10.1016/j.jenvman.2025.124370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2024] [Revised: 01/22/2025] [Accepted: 01/27/2025] [Indexed: 02/05/2025]
Abstract
Methylated and inorganic arsenic species are frequently detected in natural water systems due to anthropogenic activities and geological origins. However, the impact of arsenic species on microbial activity, particularly on methanogens responsible for methane production, remains underexplored. This study investigates the effects of arsenic on methanogenesis by adding iAs(V) and DMA(V) to wetland sediment batches and monitoring arsenic speciation in the supernatant and methane production over time. Changes in arsenic behavior in the sediment were analyzed using X-ray Absorption Fine Structure (XAFS). Microbial diversity analysis revealed that while iAs(V) acted as an electron acceptor and its reduction to iAs(III) inhibited methanogen activity due to its toxicity, DMA showed minimal effects on methane production. These findings demonstrate that arsenic dynamics in wetlands influence methane-producing microorganisms, with inorganic form of arsenic species posing significant inhibitory effects, whereas less toxic DMA(V) appears to have limited impact. This might shed light on the potential for regulating methane emissions in arsenic-contaminated wetlands.
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Affiliation(s)
- Gi-Yong Jung
- Mineral Resources Division, Korea Institute of Geoscience and Mineral Resources, Gwahak-ro 124, Yuseong-gu, Daejeon, 34132, Republic of Korea
| | - Ji-Hyun Park
- Department of Environmental Engineering, Chungnam National University, Daehak-ro 99, Yuseong-gu, Daejeon, 34134, Republic of Korea
| | - Young-Soo Han
- Department of Environmental Engineering, Chungnam National University, Daehak-ro 99, Yuseong-gu, Daejeon, 34134, Republic of Korea.
| | - So-Jeong Kim
- Mineral Resources Division, Korea Institute of Geoscience and Mineral Resources, Gwahak-ro 124, Yuseong-gu, Daejeon, 34132, Republic of Korea.
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Liang Y, Yan Y, Shi L, Wang M, Yuan X, Wang S, Ye L, Yan Z. Molecular Basis of Thioredoxin-Dependent Arsenic Transformation in Methanogenic Archaea. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025; 59:443-453. [PMID: 39560730 DOI: 10.1021/acs.est.4c06611] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2024]
Abstract
Methanogenic archaea are known to play a crucial role in the biogeochemical cycling of arsenic (As); however, the molecular basis of As transformation mediated by methanogenic archaea remains poorly understood. Herein, the characterization of the redox transformation and methylation of As by Methanosarcina acetivorans, a model methanogenic archaeon, is reported. M. acetivorans was demonstrated to mediate As(V) reduction via a cytoplasmic As reductase (ArsC) in the exponential phase of methanogenic growth and to methylate As(III) via a cytoplasmic As(III) methyltransferase (ArsM) in the stationary phase. Characterization of the ArsC-catalyzed As(V) reduction and the ArsM-catalyzed As(III) methylation showed that a thioredoxin (Trx) encoded by MA4683 was preferentially utilized as a physiological electron donor for ArsC and ArsM, providing a redox link between methanogenesis and As transformation. The structures of ArsC and ArsM complexed with Trx were modeled using AlphaFold-Multimer. Site-directed mutagenesis of key cysteine residues at the interaction sites of the complexes indicated that the archaeal ArsC and ArsM employ evolutionarily distinct disulfide bonds for interacting with Trx compared to those used by bacterial ArsC or eukaryotic ArsM. The findings of this study present a major advance in our current understanding of the physiological roles and underlying mechanism of As transformation in methanogenic archaea.
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Affiliation(s)
- Yanping Liang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Shandong, Qingdao 266237, China
| | - Yunfeng Yan
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Shandong, Qingdao 266237, China
| | - Lulu Shi
- State Key Laboratory of Microbial Technology, Microbial Technology Institute, Shandong University, Shandong, Qingdao 266237, China
| | - Mingyu Wang
- State Key Laboratory of Microbial Technology, Microbial Technology Institute, Shandong University, Shandong, Qingdao 266237, China
| | - Xianzheng Yuan
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Shandong, Qingdao 266237, China
- Sino-French Research Institute for Ecology and Environment (ISFREE), School of Environmental Science and Engineering, Shandong University, Shandong, Qingdao 266237, China
| | - Shuguang Wang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Shandong, Qingdao 266237, China
- Sino-French Research Institute for Ecology and Environment (ISFREE), School of Environmental Science and Engineering, Shandong University, Shandong, Qingdao 266237, China
- WeiHai Research Institute of Industrial Technology of Shandong University, Shandong University, Weihai 264209, China
| | - Li Ye
- Hubei Key Laboratory of Mineral Resources Processing and Environment, School of Resources and Environmental Engineering, State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, China
| | - Zhen Yan
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Shandong, Qingdao 266237, China
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Huang Y, Zhu H, Zhao H, Xu H, Xiong X, Tang C, Xu J. Interactions between arsenic and nitrogen regulate nitrogen availability and arsenic mobility in flooded paddy soils. JOURNAL OF HAZARDOUS MATERIALS 2024; 480:135981. [PMID: 39342852 DOI: 10.1016/j.jhazmat.2024.135981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Revised: 09/19/2024] [Accepted: 09/25/2024] [Indexed: 10/01/2024]
Abstract
In paddy soils, arsenic (As) stress influences nitrogen (N) transformation while application of N fertilizers during rice cropping affects As transformation. However, specific interactive effects between As and N in flooded paddy soils on As mobility and N availability were unclear. Here, we examined N and As dynamics in flooded paddy soils treated with four As levels (0, 30, 80 and 150 mg kg-1) and three urea additions (0, 4 and 8 mmol N kg-1). Arsenic contamination inhibited diazotrophs (nifH) and fungi but promoted AOA and denitrification genes (narG, nirK, nirS), decreasing dissolved organic N, NH4+-N and NO3--N. Besides, urea application stimulated As- and Fe-reducing bacteria (arrA and Geo) coupled with anammox. On Day 28, the addition of 8 mmol N kg-1 increased total As concentrations in solutions of soils treated with 30 and 80 mg As kg-1 by 2.4 and 1.8 times compared with the nil-N control. In contrast, at 150 mg As kg-1, it decreased the total As concentration in soil solution by 63 % through facilitating As(III) oxidation coupled with NO3--N reduction. These results indicate that As contamination decreases N availability, but urea application affects As mobility, depending on As contamination level.
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Affiliation(s)
- Yu Huang
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Hang Zhu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Haochun Zhao
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Haojie Xu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Xinquan Xiong
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Caixian Tang
- Department of Animal, Plant & Soil Sciences / La Trobe Institute for Sustainable Agriculture and Food, La Trobe University, Bundoora, VIC 3086, Australia
| | - Jianming Xu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China.
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9
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Zhang X, Zhang P, Wei X, Peng H, Hu L, Zhu X. Migration, transformation of arsenic, and pollution controlling strategies in paddy soil-rice system: A comprehensive review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 951:175500. [PMID: 39151637 DOI: 10.1016/j.scitotenv.2024.175500] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 08/03/2024] [Accepted: 08/12/2024] [Indexed: 08/19/2024]
Abstract
Arsenic pollution in paddy fields has become a public concern by seriously threatening rice growth, food security and human health. In this review, we delve into the biogeochemical behaviors of arsenic in paddy soil-rice system, systemically revealing the complexity of its migration and transformation processes, including the release of arsenic from soil to porewater, uptake and translocation of arsenic by rice plants, as well as transformation of arsenic species mediated by microorganism. Especially, microbial processes like reduction, oxidation and methylation of arsenic, and the coupling of arsenic with carbon, iron, sulfur, nitrogen cycling through microbes and related mechanisms were highlighted. Environmental factors like pH, redox potential, organic matter, minerals, nutrient elements, microorganisms and periphyton significantly influence these processes through different pathways, which are discussed in this review. Furthermore, the current progress in remediation strategies, including agricultural interventions, passivation, phytoremediation and microbial remediation is explored, and their potential and limitations are analyzed to address the gaps. This review offers comprehensive perspectives on the complicated behaviors of arsenic and influence factors in paddy soil-rice system, and provides a scientific basis for developing effective arsenic pollution control strategies.
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Affiliation(s)
- Xing Zhang
- Shaanxi Key Laboratory of Earth Surface System and Environmental Carrying Capacity, College of Urban and Environmental Science, Northwest University, Xi'an 710127, China.
| | - Panli Zhang
- Shaanxi Key Laboratory of Earth Surface System and Environmental Carrying Capacity, College of Urban and Environmental Science, Northwest University, Xi'an 710127, China
| | - Xin Wei
- Shaanxi Key Laboratory of Earth Surface System and Environmental Carrying Capacity, College of Urban and Environmental Science, Northwest University, Xi'an 710127, China
| | - Hanyong Peng
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Ligang Hu
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Xiaoli Zhu
- Shaanxi Key Laboratory of Earth Surface System and Environmental Carrying Capacity, College of Urban and Environmental Science, Northwest University, Xi'an 710127, China.
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10
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Zhang T, Sun Y, Parikh SJ, Colinet G, Garland G, Huo L, Zhang N, Shan H, Zeng X, Su S. Water-fertilizer regulation drives microorganisms to promote iron, nitrogen and manganese cycling: A solution for arsenic and cadmium pollution in paddy soils. JOURNAL OF HAZARDOUS MATERIALS 2024; 477:135244. [PMID: 39032176 DOI: 10.1016/j.jhazmat.2024.135244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Revised: 07/10/2024] [Accepted: 07/16/2024] [Indexed: 07/22/2024]
Abstract
The co-contamination of arsenic (As) and cadmium (Cd) in rice fields presents a global imperative for resolution. However, understanding the complex microbially driven geochemical processes and network connectivity crucial for As and Cd bioavailability under the frequent redox transitions in rice fields remains limited. Here, we conducted a series of microcosm experiments, using flooding and drainage, alongside fertilization treatments to emulate different redox environment in paddy soils. Soil As significantly reduced in drained conditions following applications of biochar or calcium-magnesium-phosphate (CMP) fertilizers by 26.3 % and 31.2 %, respectively, with concurrent decreases in Cd levels. Utilizing geochemical models, we identified the primary redox cycles dynamically altering during flooding (Fe and S cycles) and drainage (Fe, Mn, and N cycles). PLS-SEM elucidated 76 % and 61 % of the variation in Cd and As through Mn and N cycles. Functional genes implicated in multi-element cycles were analyzed, revealing a significantly higher abundance of assimilatory N reduction genes (nasA, nirA/B, narB) in drained soil, whereas an increase in ammonia-oxidizing genes (amoA/B) and a decrease in nitrate reduction to ammonium genes were observed after CMP fertilizer application. Biochar application led to significant enrichment of the substrate-binding protein of the Mn transport gene (mntC). Moreover, Fe transport genes were enriched after biochar or CMP application compared to drained soils. Among 40 high-quality metagenome-assembled genomes (MAGs), microbial predictors associated with low Cd and As contents across different treatments were examined. Bradyrhizobacea harbored abundant Mn and FeIII transport genes, while Nitrososphaeraceae carried nitrification-related genes. Two MAGs affiliated with Caulobacteraceae, carrying diverse Fe transport genes, were enriched in biochar-applied soils. Therefore, applying CMP fertilizer or biochar in aerobic rice fields can synergistically reduce the bioavailability of Cd and As by specifically enhancing the circulation of essential elements.
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Affiliation(s)
- Ting Zhang
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences/Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing 100081, China; TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, University of Liege, Gembloux 5030, Belgium
| | - Yifei Sun
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences/Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing 100081, China
| | - Sanjai J Parikh
- Department of Land, Air and Water Resources, University of California Davis, Davis, CA 95616, USA
| | - Gilles Colinet
- TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, University of Liege, Gembloux 5030, Belgium
| | - Gina Garland
- Department of Environmental System Science, ETH Zurich, Zurich 8046, Switzerland
| | - Lijuan Huo
- School of Environment and Resources, Taiyuan University of Science and Technology, Waliu Road No 66, Taiyuan 030024, China
| | - Nan Zhang
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences/Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing 100081, China
| | - Hong Shan
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences/Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing 100081, China
| | - Xibai Zeng
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences/Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing 100081, China
| | - Shiming Su
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences/Key Laboratory of Agro-Environment, Ministry of Agriculture, Beijing 100081, China.
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11
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Tang L, Xiong L, Zhang H, Joseph A, Wang Y, Li J, Yuan X, Rene ER, Zhu N. Reduced arsenic availability in paddy soil through Fe-organic ligand complexation mediated by bamboo biochar. CHEMOSPHERE 2024; 349:140790. [PMID: 38013023 DOI: 10.1016/j.chemosphere.2023.140790] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Revised: 10/22/2023] [Accepted: 11/21/2023] [Indexed: 11/29/2023]
Abstract
The reuse of arsenic (As)-contaminated paddy fields is a global challenge because long-term flooding would result in As release due to the reductive dissolution of iron minerals. Biochar amendment is a common and effective remediation technique for As-contaminated paddy soil. However, the literature is still lacking in systematic research on the function of biochar in controlling the complexation of released dissolved organic matter (DOM) and iron oxides and its synergistic impact on the availability of As in flooded paddy soil. In the present study, bamboo biochar was prepared at different pyrolysis temperatures (300, 450 and 600 °C), as BB300, BB450 and BB600. Four paddy soil treatments including BB300, BB450, BB600 applications (1% ratio, m/m, respectively) and control (CK, no biochar application) were set and incubated for 60 d in flooding condition. The results showed that As availability represented by adsorbed As species (A-As) was mitigated by BB450 amendment compared with CK. The amendment of BB450 in paddy soil facilitated the complexation of HCl extractable Fe(III)/(II) and DOM and formation of amorphous iron oxides (e.g. complexed Fe species). Moreover, the abundance of Geobacteraceae and Xanthomonadaceae, as common electroactive bacteria, was promoted in the BB450 treated paddy soil in comparison to CK, which assisted to form amorphous iron oxides. The formed amorphous iron oxides then facilitated the formation of ternary complex (As-Fe-DOM) with highly stability, which could be considered as a mechanism for As immobilization after biochar was applied to the flooding paddy soil. Thus, the synergistic effect between amorphous iron oxides and electroactive stains could make main contribution to the passivation of released As in paddy soil under long-term flooding condition. This study provided a new insight for As immobilization via regulating iron-organic ligand complexation amendment with biochar in flooding paddy soil.
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Affiliation(s)
- Li Tang
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, PR China
| | - Ling Xiong
- Collaborative Innovation Center for Modern Grain Circulation and Safety, College of Food Science and Engineering, Nanjing University of Finance and Economics, Nanjing, 210023, PR China
| | - Haiyan Zhang
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, PR China
| | - Akaninyene Joseph
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, PR China; Department of Biosciences and Biotechnology, Faculty of Science, University of Medical Sciences, Ondo City, Nigeria
| | - Yimin Wang
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, PR China
| | - Jizhou Li
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, PR China
| | - Xuyin Yuan
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, PR China
| | - Eldon R Rene
- Department of Water Supply, Sanitation and Environmental Engineering, IHE Delft Institute for Water Education, Westvest 7, 2611AX, Delft, the Netherlands
| | - Ningyuan Zhu
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, PR China; Institute of Soil Sciences, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing, 210008, PR China.
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12
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Chen C, Li L, Wang Y, Dong X, Zhao FJ. Methylotrophic methanogens and bacteria synergistically demethylate dimethylarsenate in paddy soil and alleviate rice straighthead disease. THE ISME JOURNAL 2023; 17:1851-1861. [PMID: 37604918 PMCID: PMC10579292 DOI: 10.1038/s41396-023-01498-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Revised: 08/14/2023] [Accepted: 08/16/2023] [Indexed: 08/23/2023]
Abstract
Microorganisms play a key role in arsenic (As) biogeochemistry, transforming As species between inorganic and organic forms and different oxidation states. Microbial As methylation is enhanced in anoxic paddy soil, producing primarily dimethylarsenic (DMAs), which can cause rice straighthead disease and large yield losses. DMAs can also be demethylated in paddy soil, but the microorganisms driving this process remain unclear. In this study, we showed that the enrichment culture of methylotrophic methanogens from paddy soil demethylated pentavalent DMAs(V) efficiently. DMAs(V) was reduced to DMAs(III) before demethylation. 16S rRNA gene diversity and metagenomic analysis showed that Methanomassiliicoccus dominated in the enrichment culture, with Methanosarcina and Methanoculleus also being present. We isolated Methanomassiliicoccus luminyensis CZDD1 and Methanosarcina mazei CZ1 from the enrichment culture; the former could partially demethylate trivalent DMAs(III) but not DMAs(V) and the latter could demethylate neither. Addition of strain CZDD1 to the enrichment culture greatly accelerated DMAs(V) demethylation. Demethylation of DMAs(V) in the enrichment culture was suppressed by ampicillin, suggesting the involvement of bacteria. We isolated three anaerobic bacterial strains including Clostridium from the enrichment culture, which could produce hydrogen and reduce DMAs(V) to DMAs(III). Furthermore, augmentation of the Methanomassiliicoccus-Clostridium coculture to a paddy soil decreased DMAs accumulation by rice and alleviated straighthead disease. The results reveal a synergistic relationship whereby anaerobic bacteria reduce DMAs(V) to DMAs(III) for demethylation by Methanomassiliicoccus and also produce hydrogen to promote the growth of Methanomassiliicoccus; enhancing their populations in paddy soil can help alleviate rice straighthead disease.
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Affiliation(s)
- Chuan Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and Utilization, Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Lingyan Li
- College of Life Sciences, University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Shijingshan District, 100049, Beijing, China
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 100101, Beijing, China
| | - Yanfen Wang
- College of Resources and Environment, University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Shijingshan District, 100049, Beijing, China
| | - Xiuzhu Dong
- College of Life Sciences, University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Shijingshan District, 100049, Beijing, China.
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 100101, Beijing, China.
| | - Fang-Jie Zhao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and Utilization, Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
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13
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Wang L, Guo Q, Wu G, Yu Z, Ninin JML, Planer-Friedrich B. Methanogens-Driven Arsenic Methylation Preceding Formation of Methylated Thioarsenates in Sulfide-Rich Hot Springs. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:7410-7420. [PMID: 37134202 DOI: 10.1021/acs.est.2c08814] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Hot springs represent a major source of arsenic release into the environment. Speciation is typically reported to be dominated by arsenite, arsenate, and inorganic thiolated arsenates. Much less is known about the relevance and formation of methylated thioarsenates, a group with species of high mobility and toxicity. In hot spring samples taken from the Tengchong volcanic region in China, methylated thioarsenates contributed up to 13% to total arsenic. Enrichment cultures were obtained from the corresponding sediment samples and incubated to assess their capability to convert arsenite into methylated thioarsenates over time and in the presence of different microbial inhibitors. In contrast to observations in other environmental systems (e.g., paddy soils), there was no solid evidence, supporting that the sulfate-reducing bacteria contributed to the arsenic methylation. Methanosarcina, the sole genus of methanogens detected in the enrichment cultures, as well as Methanosarcina thermophila TM-1, a pure strain within the genus, did methylate arsenic. We propose that methylated thioarsenates in a typical sulfide-rich hot spring environment like Tengchong form via a combination of biotic arsenic methylation driven by thermophilic methanogens and arsenic thiolation with either geogenic sulfide or sulfide produced by sulfate-reducing bacteria.
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Affiliation(s)
- Luxia Wang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, 430074 Wuhan, Hubei, P. R. China
- School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, P. R. China
| | - Qinghai Guo
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, 430074 Wuhan, Hubei, P. R. China
- School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, P. R. China
| | - Geng Wu
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, 430074 Wuhan, Hubei, P. R. China
| | - Zhicheng Yu
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, 430074 Wuhan, Hubei, P. R. China
| | - José Miguel Léon Ninin
- Environmental Geochemistry, Bayreuth Center for Ecology and Environmental Research (BayCEER), University of Bayreuth, Universitätsstraße 30, 95447 Bayreuth, Germany
| | - Britta Planer-Friedrich
- Environmental Geochemistry, Bayreuth Center for Ecology and Environmental Research (BayCEER), University of Bayreuth, Universitätsstraße 30, 95447 Bayreuth, Germany
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14
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Fang X, Christl I, Colina Blanco AE, Planer-Friedrich B, Zhao FJ, Kretzschmar R. Decreasing arsenic in rice: Interactions of soil sulfate amendment and water management. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 322:121152. [PMID: 36731739 DOI: 10.1016/j.envpol.2023.121152] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 12/13/2022] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
Accumulation of inorganic arsenic (iAs) and dimethylarsenate (DMA) in rice threatens human health and rice yield, respectively. We studied the yet unclear interactions of soil sulfate amendment and water management for decreasing As accumulation in rice grain in a pot experiment. We show that soil sulfate amendment (+200 mg S/kg soil) decreased grain iAs by 44% without clearly increasing grain DMA under intermittent flooding from booting stage to maturation. Under continuous flooding during this period, sulfate amendment decreased grain iAs only by 25% but increased grain DMA by 68%. The mechanisms of sulfate amendment effects on grain iAs were not explained by porewater composition or in-planta As sequestration but were allocated to the rhizosphere. Grain iAs closely correlated with As in the root iron-plaque (r = 0.92) which was effectively decreased by sulfate amendment and may have acted as an iAs source for rice uptake. Although both sulfate amendment and intermittent flooding substantially increased porewater DMA concentrations, it was the continuous flooding, irrespective of sulfate amendment, that resulted in rice straighthead disease with 47-55% less yield and 258-320% more DMA in grains than intermittent flooding. This study suggests that combining soil sulfate amendment and intermittent flooding can help to secure the quantity and quality of rice produced in As-affected areas. Our results also imply the key role of rhizosphere processes in controlling both iAs and DMA accumulation in rice which should be elucidated in the future.
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Affiliation(s)
- Xu Fang
- Institute of Biogeochemistry and Pollutant Dynamics, Department of Environmental Systems Science, ETH Zurich, Zurich, CH-8092, Switzerland.
| | - Iso Christl
- Institute of Biogeochemistry and Pollutant Dynamics, Department of Environmental Systems Science, ETH Zurich, Zurich, CH-8092, Switzerland
| | - Andrea E Colina Blanco
- Environmental Geochemistry, Bayreuth Center for Ecology and Environmental Research (BAYCEER), University of Bayreuth, Bayreuth, 95440, Germany
| | - Britta Planer-Friedrich
- Environmental Geochemistry, Bayreuth Center for Ecology and Environmental Research (BAYCEER), University of Bayreuth, Bayreuth, 95440, Germany
| | - Fang-Jie Zhao
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Ruben Kretzschmar
- Institute of Biogeochemistry and Pollutant Dynamics, Department of Environmental Systems Science, ETH Zurich, Zurich, CH-8092, Switzerland
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15
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Chen C, Yang B, Gao A, Yu Y, Zhao FJ. Transformation of arsenic species by diverse endophytic bacteria of rice roots. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 309:119825. [PMID: 35870529 DOI: 10.1016/j.envpol.2022.119825] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 07/17/2022] [Accepted: 07/18/2022] [Indexed: 06/15/2023]
Abstract
Rice growing in flooded paddy soil often accumulates considerable levels of inorganic and organic arsenic (As) species, which may cause toxicity to plants and/or pose a risk to human health. The bioavailability and toxicity of As in soil depends on its chemical species, which undergo multiple transformations driven primarily by soil microbes. However, the role of endophytes inside rice roots in As species transformation remains largely unknown. We quantified the abundances of microbial functional genes involved in As transformation in the endosphere and rhizosphere of rice roots growing in three paddy soils in a pot experiment. We also isolated 46 different bacterial endophytes and tested their abilities to transform various As species. The absolute abundances of the arsenate reductase gene arsC and the dissimilatory arsenate reductase gene arrA in the endosphere were comparable to those in the rhizosphere, whereas the absolute abundances of the arsenite methylation gene arsM and arsenite oxidation gene aioA in the endosphere were lower. After normalization based on the bacterial 16S rRNA gene, all four As transformation genes showed higher relative abundances in the endosphere than in the rhizosphere. Consistent with the functional gene data, all of the 30 aerobic endophytic isolates were able to reduce arsenate, but only 3 strains could oxidize arsenite. Among the 16 anaerobic endophytic isolates, 4 strains belonging to Desulfovibrio, Terrisporobacter or Clostridium could methylate arsenite and/or methylarsenite. Six strains of aerobic endophytes could demethylate methylarsenite, among which three strains also could reduce and demethylate methylarsenate. None of the isolates could demethylate dimethylarsenate. These results suggest that diverse endophytes living inside rice roots could participate in As species transformation and affect As accumulation and species distribution in rice plants.
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Affiliation(s)
- Chuan Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Baoyun Yang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Axiang Gao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yu Yu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Fang-Jie Zhao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
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16
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Time-Dependent Biosensor Fluorescence as a Measure of Bacterial Arsenic Uptake Kinetics and Its Inhibition by Dissolved Organic Matter. Appl Environ Microbiol 2022; 88:e0089122. [PMID: 35913152 PMCID: PMC9397108 DOI: 10.1128/aem.00891-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Microbe-mediated transformations of arsenic (As) often require As to be taken up into cells prior to enzymatic reaction. Despite the importance of these microbial reactions for As speciation and toxicity, understanding of how As bioavailability and uptake are regulated by aspects of extracellular water chemistry, notably dissolved organic matter (DOM), remains limited. Whole-cell biosensors utilizing fluorescent proteins are increasingly used for high-throughput quantification of the bioavailable fraction of As in water. Here, we present a mathematical framework for interpreting the time series of biosensor fluorescence as a measure of As uptake kinetics, which we used to evaluate the effects of different forms of DOM on uptake of trivalent arsenite. We found that thiol-containing organic compounds significantly inhibited uptake of arsenite into cells, possibly through the formation of aqueous complexes between arsenite and thiol ligands. While there was no evidence for competitive interactions between arsenite and low-molecular-weight neutral molecules (urea, glycine, and glyceraldehyde) for uptake through the aquaglyceroporin channel GlpF, which mediates transport of arsenite across cell membranes, there was evidence that labile DOM fractions may inhibit arsenite uptake through a catabolite repression-like mechanism. The observation of significant inhibition of arsenite uptake at DOM/As ratios commonly encountered in wetland pore waters suggests that DOM may be an important control on the microbial uptake of arsenite in the environment, with aspects of DOM quality playing an important role in the extent of inhibition. IMPORTANCE The speciation and toxicity of arsenic in environments like rice paddy soils and groundwater aquifers are controlled by microbe-mediated reactions. These reactions often require As to be taken up into cells prior to enzymatic reaction, but there is limited understanding of how microbial arsenic uptake is affected by variations in water chemistry. In this study, we explored the effect of dissolved organic matter (DOM) quantity and quality on microbial As uptake, with a focus on the role of thiol functional groups that are well known to form aqueous complexes with arsenic. We developed a quantitative framework for interpreting fluorescence time series from whole-cell biosensors and used this technique to evaluate effects of DOM on the rates of microbial arsenic uptake. We show that thiol-containing compounds significantly decrease rates of As uptake into microbial cells at environmentally relevant DOM/As ratios, revealing the importance of DOM quality in regulating arsenic uptake, and subsequent biotransformation, in the environment.
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17
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Li P, Wang C, Liu G, Luo X, Rauan A, Zhang C, Li T, Yu H, Dong S, Gao Q. A hydroponic plants and biofilm combined treatment system efficiently purified wastewater from cold flowing water aquaculture. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 821:153534. [PMID: 35101486 DOI: 10.1016/j.scitotenv.2022.153534] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2022] [Revised: 01/25/2022] [Accepted: 01/25/2022] [Indexed: 06/14/2023]
Abstract
Recently, more and more cold flowing water aquaculture has been adopted, but its wastewater treatment is always ignored, which causes great pressure on the environment. In this study, a compound in-situ treatment system that applied hydroponic plants and biofilm was constructed to treat the wastewater produced by cold flowing water culture of sturgeon. The removal efficiency of the nutrients from culture and the microbial composition in water and biofilm were tested, the correlation between the water quality indexes and bacterium was analyzed, and the abundance of nitrogen and phosphorus cycling genes was quantified. The results show that the system respectively achieved 90%, 100%, 100%, 100% and 48% removal efficiency of NH4+-N, NO3--N, TN, TP and COD which were produced by experimental sturgeon culture. Chinese cabbage (Brassica rapa var. chinensis) and water dropwort (Oenanthe javanica) showed obvious growth in the four plants, which contributed to the removal of nutrients from wastewater. Besides, in the biofilm, Proteobacteria, Bacteroidetes and Verrucomicrobia became the top three dominant flora at the phylum level, and Flavobacterium, Rhodoferax, Sphaerotilus and Chitinimonas became the top four dominant flora at the genus level, which promoted the removal of nitrogen in the wastewater. The FAPROTAX analysis result shows that the highest functions within the carbon and nitrogen metabolisms were significantly identified in the biofilm, such as chemoheterotrophy, aerobic chemoheterotrophy and nitrate reduction. Further, the abundance of denitrifying genes (narG and napA) was higher than the nitrifying related genes (nxrB and amoA), indicating the more active denitrifying process. In summary, the compound in-situ treatment system efficiently removed nutrients from cold flowing water aquaculture. And the combined purification of hydroponic plants and biofilm which is rich in denitrifying bacterium plays an essential role in this process.
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Affiliation(s)
- Pengju Li
- College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
| | - Chi Wang
- College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
| | - Guohao Liu
- College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
| | - Xiaolong Luo
- College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
| | - Abdessan Rauan
- College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
| | - Cheng Zhang
- College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
| | - Tian Li
- College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
| | - Haibo Yu
- College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China.
| | - Shuanglin Dong
- Key Laboratory of Mariculture, Ocean University of China, Ministry of Education, Qingdao 266100, PR China
| | - Qinfeng Gao
- Key Laboratory of Mariculture, Ocean University of China, Ministry of Education, Qingdao 266100, PR China
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18
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Glutathione is involved in the reduction of methylarsenate to generate antibiotic methylarsenite in Enterobacter sp. CZ-1. Appl Environ Microbiol 2022; 88:e0246721. [PMID: 35080903 DOI: 10.1128/aem.02467-21] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Methylarsenate (MAs(V)) is a product of microbial arsenic (As) biomethylation and has also been widely used as an herbicide. Some microbes are able to reduce nontoxic MAs(V) to highly toxic methylarsenite (MAs(III)) possibly as an antibiotic. The mechanism of MAs(V) reduction in microbes has not been elucidated. Here, we found that the bacterium Enterobacter sp. CZ-1 isolated from an As-contaminated paddy soil has a strong ability to reduce MAs(V) to MAs(III). Using a MAs(III)-responsive biosensor to detect MAs(V) reduction in E. coli Trans5α transformants of a genomic library of Enterobacter sp. CZ-1, we identified gshA, encoding a glutamate-cysteine ligase, as a key gene involved in MAs(V) reduction. Heterologous expression of gshA increased the biosynthesis of glutathione (GSH) and MAs(V) reduction in E. coli Trans5α. Deletion of gshA in Enterobacter sp. CZ-1 abolished its ability to synthesize GSH and decreased its MAs(V) reduction ability markedly, which could be restored by supplementation of exogenous GSH. In the presence of MAs(V), Enterobacter sp. CZ-1 was able to inhibit the growth of Bacillus subtilis 168; this ability was lost in the gshA-deleted mutant. In addition, deletion of gshA greatly decreased the reduction of arsenate to arsenite. These results indicate that GSH plays an important role in MAs(V) reduction to generate MAs(III) as an antibiotic. IMPORTANCE Arsenic is a ubiquitous environmental toxin. Some microbes detoxify inorganic arsenic through biomethylation, generating relatively nontoxic pentavalent methylated arsenicals, such as methylarsenate. Methylarsenate has also been widely used as an herbicide. Surprisingly, some microbes reduce methylarsenate to highly toxic methylarsenite possibly to use the latter as an antibiotic. How microbes reduce methylarsenate to methylarsenite is unknown. Here, we show that gshA encoding a glutamate-cysteine ligase in the glutathione biosynthesis pathway is involved in methylarsenate reduction in Enterobacter sp. CZ-1. Our study provides new insights into the crucial role of glutathione in the transformation of a common arsenic compound to a natural antibiotic.
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