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Albavera-Mata A, Prakash P, Gibson JB, Fonseca E, Ren S, Zhang XG, Cheng HP, Shatruk M, Trickey SB, Hennig RG. Discovery of Spin-Crossover Materials with Equivariant Graph Neural Networks and Relevance-Based Classification. J Chem Theory Comput 2025; 21:3913-3921. [PMID: 40168601 DOI: 10.1021/acs.jctc.4c01690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2025]
Abstract
Swift discovery of spin-crossover materials for their potential application in electronic and quantum devices requires techniques that enable efficient identification of suitable candidates. To this end, we screened the Cambridge Structural Database to develop a specialized database of 1439 materials and computed spin-switching energies from density functional theory for each material. The database was used to train an equivariant graph convolution neural network to predict the magnitude of the spin-conversion energy. A test mean absolute error was 360 meV. For candidate identification, we equipped the system with a relevance-based classifier. This approach leads to a nearly 4-fold improvement in identifying potential spin-crossover systems of interest as compared to conventional high-throughput screening.
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Affiliation(s)
- Angel Albavera-Mata
- Department of Physics, University of Florida, Gainesville, Florida 32611, United States
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
| | - Pawan Prakash
- Department of Physics, University of Florida, Gainesville, Florida 32611, United States
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
| | - Jason B Gibson
- Department of Materials Science and Engineering, University of Florida, Gainesville, Florida 32611, United States
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, United States
| | - Eric Fonseca
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Materials Science and Engineering, University of Florida, Gainesville, Florida 32611, United States
| | - Sijin Ren
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Materials Science and Engineering, University of Florida, Gainesville, Florida 32611, United States
| | - Xiao-Guang Zhang
- Department of Physics, University of Florida, Gainesville, Florida 32611, United States
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
| | - Hai-Ping Cheng
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Physics, Northeastern University, Boston, Massachusetts 02115, United States
| | - Michael Shatruk
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - S B Trickey
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Physics and Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
| | - Richard G Hennig
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Materials Science and Engineering, University of Florida, Gainesville, Florida 32611, United States
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2
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Trzęsowska N, Wysokiński R, Hajlaoui F, Zouari N, Michalczyk M, Scheiner S, Zierkiewicz W. Interactions Between [PdX 4] 2- (X=Cl, Br) Dianions in Presence of Counterions. Chemphyschem 2025; 26:e202400712. [PMID: 39591550 DOI: 10.1002/cphc.202400712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Revised: 10/11/2024] [Accepted: 11/25/2024] [Indexed: 11/28/2024]
Abstract
The interaction between two square palladium (II) dianions PdX4 2- (X=Cl, Br) is evaluated by crystal study and analyzed by quantum chemical means. The arrangement within the crystal between each pair of PdX4 2- neighbors is suggestive of a Pd⋅⋅⋅X noncovalent bond, which is verified by a battery of computational protocols. While the potential between these two bare dianions is computed to be highly repulsive, the introduction of even just two counterions makes this interaction attractive, as does the presence of a constellation of point charges. It is concluded that there is indeed a stabilizing Pd⋅⋅⋅X bond, but it is incapable of overcoming the strong coulombic repulsive force between two dianions. While the QTAIM, NBO, and NCI tools can indicate the presence of a noncovalent bond, they are unable to distinguish an attractive from a repulsive interaction.
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Affiliation(s)
- Natasza Trzęsowska
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże, Wyspiańskiego 27, 50-370, Wrocław, Poland
| | - Rafał Wysokiński
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże, Wyspiańskiego 27, 50-370, Wrocław, Poland
| | - Fadhel Hajlaoui
- Solid State Physico-Chemistry Laboratory, Faculty of Sciences of Sfax University, B.P. 1171, 3000, Sfax, Tunisia
| | - Nabil Zouari
- Solid State Physico-Chemistry Laboratory, Faculty of Sciences of Sfax University, B.P. 1171, 3000, Sfax, Tunisia
| | - Mariusz Michalczyk
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże, Wyspiańskiego 27, 50-370, Wrocław, Poland
| | - Steve Scheiner
- Department of Chemistry and Biochemistry, Utah State University, Logan, Utah, 84322-0300, United States
| | - Wiktor Zierkiewicz
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże, Wyspiańskiego 27, 50-370, Wrocław, Poland
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3
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Constantinides CP, Berezin AA, Flores GE, Early B, Zissimou GA, Flesariu DF, Lawson DB, Manoli M, Leitus G, Koutentis PA. Ferromagnetic Interactions within a Dimer of a π-Extended 1,2,4-Benzotriazin-4-yl. CRYSTAL GROWTH & DESIGN 2025; 25:1164-1173. [PMID: 39991688 PMCID: PMC11844355 DOI: 10.1021/acs.cgd.4c01508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2024] [Revised: 01/09/2025] [Accepted: 01/13/2025] [Indexed: 02/25/2025]
Abstract
1,3,7-Triphenyl-4,8-dihydro-1H-imidazo[4,5-g][1,2,4]benzotriazin-4-yl, a stable radical, forms 1 D π stacks. These stacks consist of dimers with alternating interplanar distances measuring 3.443 Å (short) and 4.169 Å (long). Magnetic susceptibility (χT) reaches its peak at 18 ± 4 K, signifying the presence of a dimer with ferromagnetic interactions, quantified by 2J = 18.1 cm-1. The magneto-structural relationship is corroborated by DFT calculations.
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Affiliation(s)
- Christos P. Constantinides
- Department
of Natural Sciences, University of Michigan−Dearborn, 4901 Evergreen Rd, Dearborn, Michigan 48128, United States
| | - Andrey A. Berezin
- Department
of Chemistry, University of Cyprus, P.O. Box 20537, Nicosia 1678, Cyprus
| | - Gerard Estiva Flores
- Department
of Natural Sciences, University of Michigan−Dearborn, 4901 Evergreen Rd, Dearborn, Michigan 48128, United States
| | - Brayden Early
- Department
of Natural Sciences, University of Michigan−Dearborn, 4901 Evergreen Rd, Dearborn, Michigan 48128, United States
| | - Georgia A. Zissimou
- Department
of Chemistry, University of Cyprus, P.O. Box 20537, Nicosia 1678, Cyprus
| | - Dragos F. Flesariu
- Department
of Chemistry, University of Cyprus, P.O. Box 20537, Nicosia 1678, Cyprus
| | - Daniel B. Lawson
- Department
of Natural Sciences, University of Michigan−Dearborn, 4901 Evergreen Rd, Dearborn, Michigan 48128, United States
| | - Maria Manoli
- Department
of Chemistry, University of Cyprus, P.O. Box 20537, Nicosia 1678, Cyprus
| | - Gregory Leitus
- Department
of Organic Chemistry, Weizmann Institute
of Science, Rehovot 76100, Israel
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4
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Radoń M, Drabik G, Hodorowicz M, Szklarzewicz J. Performance of quantum chemistry methods for a benchmark set of spin-state energetics derived from experimental data of 17 transition metal complexes (SSE17). Chem Sci 2024; 15:20189-20204. [PMID: 39574537 PMCID: PMC11577268 DOI: 10.1039/d4sc05471g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Accepted: 10/27/2024] [Indexed: 11/24/2024] Open
Abstract
Accurate prediction of spin-state energetics for transition metal (TM) complexes is a compelling problem in applied quantum chemistry, with enormous implications for modeling catalytic reaction mechanisms and computational discovery of materials. Computed spin-state energetics are strongly method-dependent and credible reference data are scarce, making it difficult to conduct conclusive computational studies of open-shell TM systems. Here, we present a novel benchmark set of first-row TM spin-state energetics, which is derived from experimental data of 17 complexes containing FeII, FeIII, CoII, CoIII, MnII, and NiII with chemically diverse ligands. The estimates of adiabatic or vertical spin-state splittings, which are obtained from spin crossover enthalpies or energies of spin-forbidden absorption bands, suitably back-corrected for the vibrational and environmental effects, are employed as reference values for benchmarking density functional theory (DFT) and wave function methods. The results demonstrate a high accuracy of the coupled-cluster CCSD(T) method, which features the mean absolute error (MAE) of 1.5 kcal mol-1 and maximum error of -3.5 kcal mol-1, and outperforms all the tested multireference methods: CASPT2, MRCI+Q, CASPT2/CC and CASPT2+δMRCI. Switching from Hartree-Fock to Kohn-Sham orbitals is not found to consistently improve the CCSD(T) accuracy. The best performing DFT methods are double-hybrids (PWPB95-D3(BJ), B2PLYP-D3(BJ)) with the MAEs below 3 kcal mol-1 and maximum errors within 6 kcal mol-1, whereas the DFT methods so far recommended for spin states (e.g., B3LYP*-D3(BJ) and TPSSh-D3(BJ)) are found to perform much worse with the MAEs of 5-7 kcal mol-1 and maximum errors beyond 10 kcal mol-1. This work is the first such extensive benchmark study of quantum chemistry methods for TM spin-state energetics making use of experimental reference data. The results are relevant for the proper choice of methods to characterize TM systems in computational catalysis and (bio)inorganic chemistry, and may also stimulate new developments in quantum-chemical or machine learning approaches.
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Affiliation(s)
- Mariusz Radoń
- Jagiellonian University, Faculty of Chemistry Gronostajowa 2 30-387 Kraków Poland +48 12 686 24 89
| | - Gabriela Drabik
- Jagiellonian University, Faculty of Chemistry Gronostajowa 2 30-387 Kraków Poland +48 12 686 24 89
- Jagiellonian University, Doctoral School of Exact and Natural Sciences Łojasiewicza 11 30-348 Kraków Poland
| | - Maciej Hodorowicz
- Jagiellonian University, Faculty of Chemistry Gronostajowa 2 30-387 Kraków Poland +48 12 686 24 89
| | - Janusz Szklarzewicz
- Jagiellonian University, Faculty of Chemistry Gronostajowa 2 30-387 Kraków Poland +48 12 686 24 89
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5
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Reinhardt CR, Manetsch MT, Li WL, Román-Leshkov Y, Head-Gordon T, Kulik HJ. Computational Screening of Putative Catalyst Transition Metal Complexes as Guests in a Ga 4L 612- Nanocage. Inorg Chem 2024; 63:14609-14622. [PMID: 39049593 DOI: 10.1021/acs.inorgchem.4c02113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2024]
Abstract
Metal-organic cages form well-defined microenvironments that can enhance the catalytic proficiency of encapsulated transition metal complexes (TMCs). We introduce a screening protocol to efficiently identify TMCs that are promising candidates for encapsulation in the Ga4L612- nanocage. We obtain TMCs from the Cambridge Structural Database with geometric and electronic characteristics amenable to encapsulation and mine the text of associated manuscripts to curate TMCs with documented catalytic functionality. By docking candidate TMCs inside the nanocage cavity and carrying out electronic structure calculations, we identify a subset of successfully optimized candidates (TMC-34) and observe that encapsulated guests occupy an average of 60% of the cavity volume, in line with previous observations. Notably, some guests occupy as much as 72% of the cavity as a result of linker rotation. Encapsulation has a universal effect on the electrostatic potential (ESP), systematically decreasing the ESP at the metal center of each TMC in the TMC-34 data set, while minimally altering TMC metal partial charges. Collectively these observations support geometry-based screening of potential guests and suggest that encapsulation in Ga4L612- cages could electrostatically stabilize diverse cationic or electropositive intermediates. We highlight candidate guests with associated known reactivity and solubility most amenable for encapsulation in experimental follow-up studies.
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Affiliation(s)
- Clorice R Reinhardt
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Melissa T Manetsch
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Wan-Lu Li
- Kenneth S. Pitzer Center for Theoretical Chemistry, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Yuriy Román-Leshkov
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Teresa Head-Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States
- Department of Bioengineering, University of California, Berkeley, California 94720, United States
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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6
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Drabik G, Radoń M. Approaching the Complete Basis Set Limit for Spin-State Energetics of Mononuclear First-Row Transition Metal Complexes. J Chem Theory Comput 2024; 20:3199-3217. [PMID: 38574194 PMCID: PMC11044276 DOI: 10.1021/acs.jctc.4c00092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 03/19/2024] [Accepted: 03/20/2024] [Indexed: 04/06/2024]
Abstract
Convergence to the complete basis set (CBS) limit is analyzed for the problem of spin-state energetics in mononuclear first-row transition metal (TM) complexes by taking under scrutiny a benchmark set of 18 energy differences between spin states for 13 chemically diverse TM complexes. The performance of conventional CCSD(T) and explicitly correlated CCSD(T)-F12a/b calculations in approaching the CCSD(T)/CBS limits is systematically studied. An economic computational protocol is developed based on the CCSD-F12a approximation and (here proposed) modified scaling of the perturbative triples term (T#). This computational protocol recovers the relative spin-state energetics of the benchmark set in excellent agreement with the reference CCSD(T)/CBS limits (mean absolute deviation of 0.4, mean signed deviation of 0.2, and maximum deviation of 0.8 kcal/mol) and enables performing canonical CCSD(T) calculations for mononuclear TM complexes sized up to ca. 50 atoms, which is illustrated by application to heme-related metalloporphyrins. Furthermore, a good transferability of the basis set incompleteness error (BSIE) is demonstrated for spin-state energetics computed using CCSD(T) and other wave function methods (MP2, CASPT2, CASPT2/CC, NEVPT2, and MRCI + Q), which justifies efficient focal-point approximations and simplifies the construction of multimethod benchmark studies.
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Affiliation(s)
- Gabriela Drabik
- Jagiellonian
University, Doctoral School
of Exact and Natural Sciences, Łojasiewicza 11, 30-348 Kraków, Poland
- Jagiellonian
University, Faculty of Chemistry, Gronostajowa 2, 30-387, Kraków Poland
| | - Mariusz Radoń
- Jagiellonian
University, Faculty of Chemistry, Gronostajowa 2, 30-387, Kraków Poland
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Wang T, Zhang Z, Jiang S, Yan W, Li S, Zhuang J, Xie H, Li G, Jiang L. Spectroscopic characterization of carbon monoxide activation by neutral chromium carbides. Phys Chem Chem Phys 2024; 26:5962-5968. [PMID: 38293768 DOI: 10.1039/d4cp00011k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
Abstract
Spectroscopic characterization of carbon monoxide activation by neutral metal carbides is of essential importance for understanding the structure-reactivity relationships of catalytic sites, but has been proven to be very challenging owing to the difficulty in size selection. Here, we report a size-specific infrared-vacuum ultraviolet spectroscopic study of the reactions between carbon monoxide with neutral chromium carbides. Quantum chemical calculations were carried out to identify the low-lying structures and to interpret the experimental features. The results reveal that the most stable structure of CrC3(CO)2 consists of a CCO ketenylidene unit and that of CrC4(CO)2 has a semi-bridging CO with a very low CO stretching vibrational frequency at 1821 cm-1. The electron structure analyses show that this semi-bridging CO is highly activated through the delocalized Cr-C-C three-center two-electron (3c-2e) interaction between the antibonding orbitals of CO and the metal carbide skeleton. The formation of these metal carbide carbonyls is found to be both thermodynamically exothermic and kinetically facile in the gas phase. The present findings have important implications for the mechanical understanding of the catalytic processes with isolated metal atoms/clusters dispersed on supports.
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Affiliation(s)
- Tiantong Wang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhaoyan Zhang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shuai Jiang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wenhui Yan
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shangdong Li
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jianxing Zhuang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hua Xie
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
| | - Gang Li
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
| | - Ling Jiang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
- Hefei National Laboratory, Hefei 230088, China
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8
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Phung QM, Nam HN, Ghosh A. Local Oxidation States in {FeNO} 6-8 Porphyrins: Insights from DMRG/CASSCF-CASPT2 Calculations. Inorg Chem 2023. [PMID: 38010736 DOI: 10.1021/acs.inorgchem.3c03689] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]
Abstract
A first DMRG/CASSCF-CASPT2 study of a series of paradigmatic {FeNO}6, {FeNO}7, and {FeNO}8 heme-nitrosyl complexes has led to substantial new insight as well as uncovered key shortcomings of the DFT approach. By virtue of its balanced treatment of static and dynamic correlation, the calculations have provided some of the most authoritative information available to date on the energetics of low- versus high-spin states of different classes of heme-nitrosyl complexes. Thus, the calculations indicate low doublet-quartet gaps of 1-4 kcal/mol for {FeNO}7 complexes and high singlet-triplet gaps of ≳20 kcal/mol for both {FeNO}6 and {FeNO}8 complexes. In contrast, DFT calculations yield widely divergent spin state gaps as a function of the exchange-correlation functional. DMRG-CASSCF calculations also help calibrate DFT spin densities for {FeNO}7 complexes, pointing to those obtained from classic pure functionals as the most accurate. The general picture appears to be that nearly all the spin density of Fe[P](NO) is localized on the Fe, while the axial ligand imidazole (ImH) in Fe[P](NO)(ImH) pushes a part of the spin density onto the NO moiety. An analysis of the DMRG-CASSCF wave function in terms of localized orbitals and of the resulting configuration state functions in terms of resonance forms with varying NO(π*) occupancies has allowed us to address the longstanding question of local oxidation states in heme-nitrosyl complexes. The analysis indicates NO(neutral) resonance forms [i.e., Fe(II)-NO0 and Fe(III)-NO0] as the major contributors to both {FeNO}6 and {FeNO}7 complexes. This finding is at variance with the common formulation of {FeNO}6 hemes as Fe(II)-NO+ species but is consonant with an Fe L-edge XAS analysis by Solomon and co-workers. For the {FeNO}8 complex {Fe[P](NO)}-, our analysis suggests a resonance hybrid description: Fe(I)-NO0 ↔ Fe(II)-NO-, in agreement with earlier DFT studies. Vibrational analyses of the compounds studied indicate an imperfect but fair correlation between the NO stretching frequency and NO(π*) occupancy, highlighting the usefulness of vibrational data as a preliminary indicator of the NO oxidation state.
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Affiliation(s)
- Quan Manh Phung
- Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
| | - Ho Ngoc Nam
- Institute of Materials Innovation, Institutes of Innovation for Future Society, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
- Department of Chemical Systems Engineering, Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8603, Japan
| | - Abhik Ghosh
- Department of Chemistry, UiT the Arctic University of Norway, N-9037 Tromsø, Norway
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9
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Radoń M. Benchmarks for transition metal spin-state energetics: why and how to employ experimental reference data? Phys Chem Chem Phys 2023; 25:30800-30820. [PMID: 37938035 DOI: 10.1039/d3cp03537a] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2023]
Abstract
Accurate prediction of energy differences between alternative spin states of transition metal complexes is essential in computational (bio)inorganic chemistry-for example, in characterization of spin crossover materials and in the theoretical modeling of open-shell reaction mechanisms-but it remains one of the most compelling problems for quantum chemistry methods. A part of this challenge is to obtain reliable reference data for benchmark studies, as even the highest-level applicable methods are known to give divergent results. This Perspective discusses two possible approaches to method benchmarking for spin-state energetics: using either theoretically computed or experiment-derived reference data. With the focus on the latter approach, an extensive general review is provided for the available experimental data of spin-state energetics and their interpretations in the context of benchmark studies, targeting the possibility of back-correcting the vibrational effects and the influence of solvents or crystalline environments. With a growing amount of experience, these effects can be now not only qualitatively understood, but also quantitatively modeled, providing the way to derive nearly chemically accurate estimates of the electronic spin-state gaps to be used as benchmarks and advancing our understanding of the phenomena related to spin states in condensed phases.
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Affiliation(s)
- Mariusz Radoń
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Krakow, Poland.
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Li Manni G, Fdez. Galván I, Alavi A, Aleotti F, Aquilante F, Autschbach J, Avagliano D, Baiardi A, Bao JJ, Battaglia S, Birnoschi L, Blanco-González A, Bokarev SI, Broer R, Cacciari R, Calio PB, Carlson RK, Carvalho Couto R, Cerdán L, Chibotaru LF, Chilton NF, Church JR, Conti I, Coriani S, Cuéllar-Zuquin J, Daoud RE, Dattani N, Decleva P, de Graaf C, Delcey M, De Vico L, Dobrautz W, Dong SS, Feng R, Ferré N, Filatov(Gulak) M, Gagliardi L, Garavelli M, González L, Guan Y, Guo M, Hennefarth MR, Hermes MR, Hoyer CE, Huix-Rotllant M, Jaiswal VK, Kaiser A, Kaliakin DS, Khamesian M, King DS, Kochetov V, Krośnicki M, Kumaar AA, Larsson ED, Lehtola S, Lepetit MB, Lischka H, López Ríos P, Lundberg M, Ma D, Mai S, Marquetand P, Merritt ICD, Montorsi F, Mörchen M, Nenov A, Nguyen VHA, Nishimoto Y, Oakley MS, Olivucci M, Oppel M, Padula D, Pandharkar R, Phung QM, Plasser F, Raggi G, Rebolini E, Reiher M, Rivalta I, Roca-Sanjuán D, Romig T, Safari AA, Sánchez-Mansilla A, Sand AM, Schapiro I, Scott TR, Segarra-Martí J, Segatta F, Sergentu DC, Sharma P, Shepard R, Shu Y, Staab JK, Straatsma TP, Sørensen LK, Tenorio BNC, Truhlar DG, Ungur L, Vacher M, Veryazov V, et alLi Manni G, Fdez. Galván I, Alavi A, Aleotti F, Aquilante F, Autschbach J, Avagliano D, Baiardi A, Bao JJ, Battaglia S, Birnoschi L, Blanco-González A, Bokarev SI, Broer R, Cacciari R, Calio PB, Carlson RK, Carvalho Couto R, Cerdán L, Chibotaru LF, Chilton NF, Church JR, Conti I, Coriani S, Cuéllar-Zuquin J, Daoud RE, Dattani N, Decleva P, de Graaf C, Delcey M, De Vico L, Dobrautz W, Dong SS, Feng R, Ferré N, Filatov(Gulak) M, Gagliardi L, Garavelli M, González L, Guan Y, Guo M, Hennefarth MR, Hermes MR, Hoyer CE, Huix-Rotllant M, Jaiswal VK, Kaiser A, Kaliakin DS, Khamesian M, King DS, Kochetov V, Krośnicki M, Kumaar AA, Larsson ED, Lehtola S, Lepetit MB, Lischka H, López Ríos P, Lundberg M, Ma D, Mai S, Marquetand P, Merritt ICD, Montorsi F, Mörchen M, Nenov A, Nguyen VHA, Nishimoto Y, Oakley MS, Olivucci M, Oppel M, Padula D, Pandharkar R, Phung QM, Plasser F, Raggi G, Rebolini E, Reiher M, Rivalta I, Roca-Sanjuán D, Romig T, Safari AA, Sánchez-Mansilla A, Sand AM, Schapiro I, Scott TR, Segarra-Martí J, Segatta F, Sergentu DC, Sharma P, Shepard R, Shu Y, Staab JK, Straatsma TP, Sørensen LK, Tenorio BNC, Truhlar DG, Ungur L, Vacher M, Veryazov V, Voß TA, Weser O, Wu D, Yang X, Yarkony D, Zhou C, Zobel JP, Lindh R. The OpenMolcas Web: A Community-Driven Approach to Advancing Computational Chemistry. J Chem Theory Comput 2023; 19:6933-6991. [PMID: 37216210 PMCID: PMC10601490 DOI: 10.1021/acs.jctc.3c00182] [Show More Authors] [Citation(s) in RCA: 120] [Impact Index Per Article: 60.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Indexed: 05/24/2023]
Abstract
The developments of the open-source OpenMolcas chemistry software environment since spring 2020 are described, with a focus on novel functionalities accessible in the stable branch of the package or via interfaces with other packages. These developments span a wide range of topics in computational chemistry and are presented in thematic sections: electronic structure theory, electronic spectroscopy simulations, analytic gradients and molecular structure optimizations, ab initio molecular dynamics, and other new features. This report offers an overview of the chemical phenomena and processes OpenMolcas can address, while showing that OpenMolcas is an attractive platform for state-of-the-art atomistic computer simulations.
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Affiliation(s)
- Giovanni Li Manni
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Ignacio Fdez. Galván
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Ali Alavi
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
- Yusuf Hamied
Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Flavia Aleotti
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Francesco Aquilante
- Theory and
Simulation of Materials (THEOS) and National Centre for Computational
Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jochen Autschbach
- Department
of Chemistry, University at Buffalo, State
University of New York, Buffalo, New York 14260-3000, United States
| | - Davide Avagliano
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Alberto Baiardi
- ETH Zurich, Laboratory for Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Jie J. Bao
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Stefano Battaglia
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Letitia Birnoschi
- The Department
of Chemistry, The University of Manchester, M13 9PL, Manchester, U.K.
| | - Alejandro Blanco-González
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
| | - Sergey I. Bokarev
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
- Chemistry
Department, School of Natural Sciences, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany
| | - Ria Broer
- Theoretical
Chemistry, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - Roberto Cacciari
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Paul B. Calio
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Rebecca K. Carlson
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Rafael Carvalho Couto
- Division
of Theoretical Chemistry and Biology, School of Engineering Sciences
in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Luis Cerdán
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
- Instituto
de Óptica (IO−CSIC), Consejo
Superior de Investigaciones Científicas, 28006, Madrid, Spain
| | - Liviu F. Chibotaru
- Department
of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
| | - Nicholas F. Chilton
- The Department
of Chemistry, The University of Manchester, M13 9PL, Manchester, U.K.
| | | | - Irene Conti
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Sonia Coriani
- Department
of Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, 2800 Kongens Lyngby, Denmark
| | - Juliana Cuéllar-Zuquin
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
| | - Razan E. Daoud
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Nike Dattani
- HPQC Labs, Waterloo, N2T 2K9 Ontario Canada
- HPQC College, Waterloo, N2T 2K9 Ontario Canada
| | - Piero Decleva
- Istituto
Officina dei Materiali IOM-CNR and Dipartimento di Scienze Chimiche
e Farmaceutiche, Università degli
Studi di Trieste, I-34121 Trieste, Italy
| | - Coen de Graaf
- Department
of Physical and Inorganic Chemistry, Universitat
Rovira i Virgili, Tarragona 43007, Spain
- ICREA, Pg. Lluís
Companys 23, 08010 Barcelona, Spain
| | - Mickaël
G. Delcey
- Division
of Theoretical Chemistry and Biology, School of Engineering Sciences
in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Luca De Vico
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Werner Dobrautz
- Chalmers
University of Technology, Department of Chemistry
and Chemical Engineering, 41296 Gothenburg, Sweden
| | - Sijia S. Dong
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry and Chemical Biology, Department of Physics, and Department
of Chemical Engineering, Northeastern University, Boston, Massachusetts 02115, United States
| | - Rulin Feng
- Department
of Chemistry, University at Buffalo, State
University of New York, Buffalo, New York 14260-3000, United States
- Department
of Chemistry, Fudan University, Shanghai 200433, China
| | - Nicolas Ferré
- Institut
de Chimie Radicalaire (UMR-7273), Aix-Marseille
Univ, CNRS, ICR 13013 Marseille, France
| | | | - Laura Gagliardi
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Marco Garavelli
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Leticia González
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Yafu Guan
- State Key
Laboratory of Molecular Reaction Dynamics and Center for Theoretical
Computational Chemistry, Dalian Institute
of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, People’s Republic of China
| | - Meiyuan Guo
- SSRL, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Matthew R. Hennefarth
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Matthew R. Hermes
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Chad E. Hoyer
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Miquel Huix-Rotllant
- Institut
de Chimie Radicalaire (UMR-7273), Aix-Marseille
Univ, CNRS, ICR 13013 Marseille, France
| | - Vishal Kumar Jaiswal
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Andy Kaiser
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Danil S. Kaliakin
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
| | - Marjan Khamesian
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Daniel S. King
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Vladislav Kochetov
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Marek Krośnicki
- Institute
of Theoretical Physics and Astrophysics, Faculty of Mathematics, Physics
and Informatics, University of Gdańsk, ul Wita Stwosza 57, 80-952, Gdańsk, Poland
| | | | - Ernst D. Larsson
- Division
of Theoretical Chemistry, Chemical Centre, Lund University, P.O. Box 124, SE-22100, Lund, Sweden
| | - Susi Lehtola
- Molecular
Sciences Software Institute, Blacksburg, Virginia 24061, United States
- Department
of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 University of Helsinki, Finland
| | - Marie-Bernadette Lepetit
- Condensed
Matter Theory Group, Institut Néel, CNRS UPR 2940, 38042 Grenoble, France
- Theory
Group, Institut Laue Langevin, 38042 Grenoble, France
| | - Hans Lischka
- Department
of Chemistry and Biochemistry, Texas Tech
University, Lubbock, Texas 79409-1061, United States
| | - Pablo López Ríos
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Marcus Lundberg
- Department
of Chemistry − Ångström Laboratory, Uppsala University, SE-75120 Uppsala, Sweden
| | - Dongxia Ma
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Sebastian Mai
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Philipp Marquetand
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | | | - Francesco Montorsi
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Maximilian Mörchen
- ETH Zurich, Laboratory for Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Artur Nenov
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Vu Ha Anh Nguyen
- Department
of Chemistry, National University of Singapore, 3 Science Drive 3, 117543 Singapore
| | - Yoshio Nishimoto
- Graduate
School of Science, Kyoto University, Kyoto 606-8502, Japan
| | - Meagan S. Oakley
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Massimo Olivucci
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Markus Oppel
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Daniele Padula
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Riddhish Pandharkar
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Quan Manh Phung
- Department
of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
- Institute
of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
| | - Felix Plasser
- Department
of Chemistry, Loughborough University, Loughborough, LE11 3TU, U.K.
| | - Gerardo Raggi
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
- Quantum
Materials and Software LTD, 128 City Road, London, EC1V 2NX, United Kingdom
| | - Elisa Rebolini
- Scientific
Computing Group, Institut Laue Langevin, 38042 Grenoble, France
| | - Markus Reiher
- ETH Zurich, Laboratory for Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Ivan Rivalta
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Daniel Roca-Sanjuán
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
| | - Thies Romig
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Arta Anushirwan Safari
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Aitor Sánchez-Mansilla
- Department
of Physical and Inorganic Chemistry, Universitat
Rovira i Virgili, Tarragona 43007, Spain
| | - Andrew M. Sand
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry and Biochemistry, Butler University, Indianapolis, Indiana 46208, United States
| | - Igor Schapiro
- Institute
of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - Thais R. Scott
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
- Department
of Chemistry, University of California, Irvine, California 92697, United States
| | - Javier Segarra-Martí
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
| | - Francesco Segatta
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Dumitru-Claudiu Sergentu
- Department
of Chemistry, University at Buffalo, State
University of New York, Buffalo, New York 14260-3000, United States
- Laboratory
RA-03, RECENT AIR, A. I. Cuza University of Iaşi, RA-03 Laboratory (RECENT AIR), Iaşi 700506, Romania
| | - Prachi Sharma
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Ron Shepard
- Chemical
Sciences and Engineering Division, Argonne
National Laboratory, Lemont, Illinois 60439, USA
| | - Yinan Shu
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Jakob K. Staab
- The Department
of Chemistry, The University of Manchester, M13 9PL, Manchester, U.K.
| | - Tjerk P. Straatsma
- National
Center for Computational Sciences, Oak Ridge
National Laboratory, Oak Ridge, Tennessee 37831-6373, United States
- Department
of Chemistry and Biochemistry, University
of Alabama, Tuscaloosa, Alabama 35487-0336, United States
| | | | - Bruno Nunes Cabral Tenorio
- Department
of Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, 2800 Kongens Lyngby, Denmark
| | - Donald G. Truhlar
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Liviu Ungur
- Department
of Chemistry, National University of Singapore, 3 Science Drive 3, 117543 Singapore
| | - Morgane Vacher
- Nantes
Université, CNRS, CEISAM, UMR 6230, F-44000 Nantes, France
| | - Valera Veryazov
- Division
of Theoretical Chemistry, Chemical Centre, Lund University, P.O. Box 124, SE-22100, Lund, Sweden
| | - Torben Arne Voß
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Oskar Weser
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Dihua Wu
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Xuchun Yang
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
| | - David Yarkony
- Department
of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Chen Zhou
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - J. Patrick Zobel
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Roland Lindh
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
- Uppsala
Center for Computational Chemistry (UC3), Uppsala University, PO Box 576, SE-751 23 Uppsala. Sweden
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Mariano AL, Fernández-Blanco A, Poloni R. Perspective from a Hubbard U-density corrected scheme towards a spin crossover-mediated change in gas affinity. J Chem Phys 2023; 159:154108. [PMID: 37855313 DOI: 10.1063/5.0157971] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2023] [Accepted: 09/29/2023] [Indexed: 10/20/2023] Open
Abstract
By employing a recently proposed Hubbard U density-corrected scheme within density functional theory, we provide design principles towards the design of materials exhibiting a spin crossover-assisted gas release. Small molecular fragments are used as case study to identify two main mechanisms behind the change in binding energy upon spin transitions. The feasibility of the proposed mechanism in porous crystals is assessed by correlating the change in binding energy of CO2, CO, N2, and H2, upon spin crossover, with the adiabatic energy difference associated with the spin state change of the square-planar metal in Hofmann-type clathrates (M = Fe, Mn, Ni). A few promising cases are identified for the adsorption of intermediate ligand field strength molecules such as N2 and H2. The latter stands out as the most original result as the strong interaction in low spin, as expected from a Kubas mechanism, results in a large change in binding energy. This work provides a general perspective towards the engineering of open-metal site frameworks exhibiting local environments designed to have a spin crossover upon adsorption of specific gas molecules.
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Affiliation(s)
- A L Mariano
- SIMaP, Grenoble-INP, CNRS, University of Grenoble Alpes, 38042 Grenoble, France
| | - A Fernández-Blanco
- SIMaP, Grenoble-INP, CNRS, University of Grenoble Alpes, 38042 Grenoble, France
- Institut Laue Langevin, 71 Avenue des Martyrs, CS 20156-38042 Grenoble, France
| | - R Poloni
- SIMaP, Grenoble-INP, CNRS, University of Grenoble Alpes, 38042 Grenoble, France
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12
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Boychuk BTA, Wetmore SD. Assessment of Density Functional Theory Methods for the Structural Prediction of Transition and Post-Transition Metal-Nucleic Acid Complexes. J Chem Theory Comput 2023. [PMID: 37399186 DOI: 10.1021/acs.jctc.3c00127] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/05/2023]
Abstract
Understanding the structure of metal-nucleic acid systems is important for many applications such as the design of new pharmaceuticals, metal detection platforms, and nanomaterials. Herein, we explore the ability of 20 density functional theory (DFT) functionals to reproduce the crystal structure geometry of transition and post-transition metal-nucleic acid complexes identified in the Protein Data Bank and Cambridge Structural Database. The environmental extremes of the gas phase and implicit water were considered, and analysis focused on the global and inner coordination geometry, including the coordination distances. Although gas-phase calculations were unable to describe the structure of 12 out of the 53 complexes in our test set regardless of the DFT functional considered, accounting for the broader environment through implicit solvation or constraining the model truncation points to crystallographic coordinates generally afforded agreement with the experimental structure, suggesting that functional performance for these systems is likely due to the models rather than the methods. For the remaining 41 complexes, our results show that the reliability of functionals depends on the metal identity, with the magnitude of error varying across the periodic table. Furthermore, minimal changes in the geometries of these metal-nucleic acid complexes occur upon use of the Stuttgart-Dresden effective core potential and/or inclusion of an implicit water environment. The overall top three performing functionals are ωB97X-V, ωB97X-D3(BJ), and MN15, which reliably describe the structure of a broad range of metal-nucleic acid systems. Other suitable functionals include MN15-L, which is a cheaper alternative to MN15, and PBEh-3c, which is commonly used in QM/MM calculations of biomolecules. In fact, these five methods were the only functionals tested to reproduce the coordination sphere of Cu2+-containing complexes. For metal-nucleic acid systems that do not contain Cu2+, ωB97X and ωB97X-D are also suitable choices. These top-performing methods can be utilized in future investigations of diverse metal-nucleic acid complexes of relevance to biology and material science.
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Affiliation(s)
- Briana T A Boychuk
- Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge, AB T1K 3M4, Canada
| | - Stacey D Wetmore
- Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge, AB T1K 3M4, Canada
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13
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Benjamin I, Louis H, Okon GA, Qader SW, Afahanam LE, Fidelis CF, Eno EA, Ejiofor EE, Manicum ALE. Transition Metal-Decorated B 12N 12-X (X = Au, Cu, Ni, Os, Pt, and Zn) Nanoclusters as Biosensors for Carboplatin. ACS OMEGA 2023; 8:10006-10021. [PMID: 36969422 PMCID: PMC10035017 DOI: 10.1021/acsomega.2c07250] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Accepted: 01/09/2023] [Indexed: 06/02/2023]
Abstract
Theoretical studies on the adsorption, sensibility, and reactivity of a boron nitride nanocage decorated with Au, Cu, Ni, Os, Pt, and Zn metals as a biosensor material were carried out for the adsorption of carboplatin by applying the density functional theory computation at the B3LYP-GD3BJ/def2svp level of theory. All the optimized structures, as well as the calculations as regards the studied objective including electronic properties, geometry optimization parameters, adsorption energy studies, natural bond orbital analysis, topology studies, sensor mechanistic parameters, and thermodynamic properties (ΔG and ΔH), were investigated herein. As a result, the noticeable change in the energy gap of the studied surfaces when interacting with carboplatin accounted for the surfaces' reactivity, stability, conductivity, work function, and overall adsorption ability, implying that the studied decorated surfaces are good sensor materials for sensing carboplatin. Furthermore, the negative adsorption energies obtained for interacting surfaces decorated with Cu, Ni, Os, and Zn suggest that the surface has a superior ability to sense carboplatin as chemisorption was seen. Substantially, the geometric short adsorption bond length after adsorption, thermodynamically spontaneous reactions, and acceptable sensor mechanism results demonstrate that the investigated surfaces have strong sensing characteristics for sensing carboplatin.
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Affiliation(s)
- Innocent Benjamin
- Computational
and Bio-Simulation Research Group, University
of Calabar, Calabar 540221, Nigeria
| | - Hitler Louis
- Computational
and Bio-Simulation Research Group, University
of Calabar, Calabar 540221, Nigeria
- Department
of Pure and Applied Chemistry, Faculty of Physical Sciences, University of Calabar, Calabar 540221, Nigeria
| | - Gideon A. Okon
- Computational
and Bio-Simulation Research Group, University
of Calabar, Calabar 540221, Nigeria
- Department
of Chemical Sciences, Clifford University, Owerrinta 451101, Nigeria
| | - Suhailah W. Qader
- Department
of Medical Laboratory Science, Knowledge
University, Erbil 44001, Iraq
| | - Lucy E. Afahanam
- Computational
and Bio-Simulation Research Group, University
of Calabar, Calabar 540221, Nigeria
| | - Chidera F. Fidelis
- Computational
and Bio-Simulation Research Group, University
of Calabar, Calabar 540221, Nigeria
- Department
of Pure and Applied Chemistry, Faculty of Physical Sciences, University of Calabar, Calabar 540221, Nigeria
| | - Ededet A. Eno
- Computational
and Bio-Simulation Research Group, University
of Calabar, Calabar 540221, Nigeria
- Department
of Pure and Applied Chemistry, Faculty of Physical Sciences, University of Calabar, Calabar 540221, Nigeria
| | - Emmanuel E. Ejiofor
- Computational
and Bio-Simulation Research Group, University
of Calabar, Calabar 540221, Nigeria
- Department
of Chemical Sciences, Clifford University, Owerrinta 451101, Nigeria
| | - Amanda-Lee E. Manicum
- Department
of Chemistry, Tshwane University of Technology, Pretoria 0183, South Africa
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14
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Colley JE, Dynak NJ, Blais JRC, Duncan MA. Photodissociation Spectroscopy and Photofragment Imaging of the Fe +(Acetylene) Complex. J Phys Chem A 2023; 127:1244-1251. [PMID: 36701377 DOI: 10.1021/acs.jpca.2c08456] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Tunable laser photodissociation spectroscopy in the 700-400 nm region and photofragment imaging experiments are employed to investigate the Fe+(acetylene) ion-molecule complex. At energies above a threshold at 679 nm, continuous dissociation is detected throughout the visible wavelength region, with regions of broad structure. Comparison to the spectrum predicted by time-dependent density functional theory (TD-DFT) indicates that the complex has a quartet ground state. The dissociation threshold for Fe+(acetylene) at 679 nm provides the dissociation energy on the quartet potential energy surface. Correction for the atomic quartet-sextet spin state energy difference provides an adiabatic dissociation energy of 36.8 ± 0.2 kcal/mol. Photofragment imaging of the Fe+ photoproduct produced at 603.5 nm produces significant kinetic energy release (KER). The photon energy and the maximum value of the KER provide an upper limit on the dissociation energy of D0 ≤ 34.6 ± 3.2 kcal/mol. The dissociation energies determined from the spectroscopy and photofragment imaging experiments agree nicely with the value determined previously by collision-induced dissociation (38.0 ± 2.6 kcal/mol). However, both values are significantly lower than those produced by computational chemistry at the DFT level using different functionals recommended for transition-metal chemistry.
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Affiliation(s)
- Jason E Colley
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Nathan J Dynak
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - John R C Blais
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Michael A Duncan
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
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15
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Reimann M, Kaupp M. Spin-State Splittings in 3d Transition-Metal Complexes Revisited: Toward a Reliable Theory Benchmark. J Chem Theory Comput 2023; 19:97-108. [PMID: 36576816 DOI: 10.1021/acs.jctc.2c00925] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
A new composite method for the calculation of spin-crossover energies in 3d transition-metal complexes based on multireference methods is presented. The method reduces to MRCISD+Q at the complete-basis-set (CBS) level for atomic ions, for which it gives excitation energies with a mean absolute error of only ca. 0.01 eV. For molecular complexes, the CASPT2+δMRCI composite approach corresponds to a CASPT2/CBS calculation augmented by a high-level MRCISD+Q-CASPT2 correction with a smaller ligand basis set. For a set of [Fe(He)6]n+ test complexes, the approach reproduces full MRCISD+Q/CBS results to within better than 0.04 eV, without depending on any arbitrary IPEA shifts. The high-quality CASPT2+δMRCI method has then been applied to a series of 3d transition-metal hexaqua complexes in aqueous solution, augmented by an elaborate 3D-RISM-SCF solvent treatment of the underlying structures. It provides unprecedented agreement with experiment for the lowest-lying vertical spin-flip excitation energies, except for the Fe3+ system. Closer examination of the latter case provides strong evidence that the observed lowest-energy excitation at 1.56 eV, which has been used frequently for evaluating quantum-chemical methods, does not arise from the iron(III) hexaqua complex in solution, but from its singly deprotonated counterpart, [Fe(H2O)5OH]2+.
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Affiliation(s)
- Marc Reimann
- Institut für Chemie, Theoretische Chemie/Quantenchemie, Technische Universität Berlin, Sekr. C7, Straße des 17. Juni 135, D-10623 Berlin, Germany
| | - Martin Kaupp
- Institut für Chemie, Theoretische Chemie/Quantenchemie, Technische Universität Berlin, Sekr. C7, Straße des 17. Juni 135, D-10623 Berlin, Germany
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16
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Vuckovic S. Using AI to navigate through the DFA zoo. NATURE COMPUTATIONAL SCIENCE 2023; 3:6-7. [PMID: 38177964 DOI: 10.1038/s43588-022-00393-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2024]
Affiliation(s)
- Stefan Vuckovic
- Physical and Theoretical Chemistry, University of Wuppertal, Wuppertal, Germany.
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17
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Duan C, Nandy A, Meyer R, Arunachalam N, Kulik HJ. A transferable recommender approach for selecting the best density functional approximations in chemical discovery. NATURE COMPUTATIONAL SCIENCE 2023; 3:38-47. [PMID: 38177951 DOI: 10.1038/s43588-022-00384-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2022] [Accepted: 11/23/2022] [Indexed: 01/06/2024]
Abstract
Approximate density functional theory has become indispensable owing to its balanced cost-accuracy trade-off, including in large-scale screening. To date, however, no density functional approximation (DFA) with universal accuracy has been identified, leading to uncertainty in the quality of data generated from density functional theory. With electron density fitting and Δ-learning, we build a DFA recommender that selects the DFA with the lowest expected error with respect to the gold standard (but cost-prohibitive) coupled cluster theory in a system-specific manner. We demonstrate this recommender approach on the evaluation of vertical spin splitting energies of transition metal complexes. Our recommender predicts top-performing DFAs and yields excellent accuracy (about 2 kcal mol-1) for chemical discovery, outperforming both individual Δ-learning models and the best conventional single-functional approach from a set of 48 DFAs. By demonstrating transferability to diverse synthesized compounds, our recommender potentially addresses the accuracy versus scope dilemma broadly encountered in computational chemistry.
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Affiliation(s)
- Chenru Duan
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Aditya Nandy
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Ralf Meyer
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Naveen Arunachalam
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.
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18
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Brathwaite AD, Marks JH, Webster IJ, Batchelor AG, Ward TD, Duncan MA. Coordination and Spin States in Fe +(C 2H 2) n Complexes Studied with Selected-Ion Infrared Spectroscopy. J Phys Chem A 2022; 126:9680-9690. [PMID: 36517042 DOI: 10.1021/acs.jpca.2c07556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Fe+(acetylene)n ion-molecule complexes are produced in a supersonic molecular beam with pulsed laser vaporization. These ions are mass selected and studied with infrared photodissociation spectroscopy in the C-H stretching region, complemented by computational chemistry calculations. All C-H stretch vibrations are shifted to frequencies lower than the vibrations of isolated acetylene because of the charge transfer that occurs between the metal ion and the molecules. Complexes in the size range of n = 1-4 are found to have structures with individual acetylene molecules bound to the core metal ion via cation-π interactions. The coordination is completed with four ligands in a structure close to a distorted tetrahedron. Larger complexes in the range of n = 5-8 have external acetylene molecules solvating this n = 4 core ion via CH-π bonding to inner-shell ligands. DFT computations predict that quartet spin states are more stable for all complex sizes, but infrared spectra for quartet and doublet spin states are quite similar, precluding definitive determination of the spin states. There is no evidence for any of these complexes having acetylenes coupled into reacted structures. This is consistent with computed thermochemistry, which finds significant activation barriers to such reactions.
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Affiliation(s)
- Antonio D Brathwaite
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Joshua H Marks
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Ian J Webster
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Anna G Batchelor
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Timothy D Ward
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Michael A Duncan
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
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19
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Reimann M, Kaupp M. Spin-State Splittings in 3d Transition-Metal Complexes Revisited: Benchmarking Approximate Methods for Adiabatic Spin-State Energy Differences in Fe(II) Complexes. J Chem Theory Comput 2022; 18:7442-7456. [PMID: 36417564 DOI: 10.1021/acs.jctc.2c00924] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
The CASPT2+δMRCI composite approach reported in a companion paper has been extended and used to provide high-quality reference data for a series of adiabatic spin gaps (defined as ΔE = Equintet - Esinglet) of [FeIIL6]2+ complexes (L = CNH, CO, NCH, NH3, H2O), either at nonrelativistic level or including scalar relativistic effects. These highly accurate data have been used to evaluate the performance of various more approximate methods. Coupled-cluster theory with singles, doubles, and perturbative triples, CCSD(T), is found to agree well with the new reference data for Werner-type complexes but exhibits larger underestimates by up to 70 kJ/mol for the π-acceptor ligands, due to appreciable static correlation in the low-spin states of these systems. Widely used domain-based local CCSD(T) calculations, DLPNO-CCSD(T), are shown to depend very sensitively on the cutoff values used to construct the localized domains, and standard values are not sufficient. A large number of density functional approximations have been evaluated against the new reference data. The B2PLYP double hybrid gives the smallest deviations, but several functionals from different rungs of the usual ladder hierarchy give mean absolute deviations below 20 kJ/mol. This includes the B97-D semilocal functional, the PBE0* global hybrid with 15% exact-exchange admixture, as well as the local hybrids LH07s-SVWN and LH07t-SVWN. Several further functionals achieve mean absolute errors below 30 kJ/mol (M06L-D4, SSB-D, B97-1-D4, LC-ωPBE-D4, LH12ct-SsirPW92-D4, LH12ct-SsifPW92-D4, LH14t-calPBE-D4, LHJ-HFcal-D4, and several further double hybrids) and thereby also still overall outperform CCSD(T) or uncorrected CASPT2. While exact-exchange admixture is a crucial factor in favoring high-spin states, the present evaluations confirm that other aspects can be important as well. A number of the better-performing functionals underestimate the spin gaps for the π-acceptor ligands but overestimate them for L = NH3, H2O. In contrast to a previous suggestion, non-self-consistent density functional theory (DFT) computations on top of Hartree-Fock orbitals are not a promising path to produce accurate spin gaps in such complexes.
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Affiliation(s)
- Marc Reimann
- Technische Universität Berlin, Institut für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Straße des 17. Juni 135, D-10623 Berlin, Germany
| | - Martin Kaupp
- Technische Universität Berlin, Institut für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Straße des 17. Juni 135, D-10623 Berlin, Germany
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20
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Duan A, Xiao F, Lan Y, Niu L. Mechanistic views and computational studies on transition-metal-catalyzed reductive coupling reactions. Chem Soc Rev 2022; 51:9986-10015. [PMID: 36374254 DOI: 10.1039/d2cs00371f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Transition-metal-catalyzed reductive coupling reactions have been considered as a powerful tool to convert two electrophiles into value-added products. Numerous related reports have shown the fascinating potential. Mechanistic studies, especially theoretical studies, can provide important implications for the design of novel reductive coupling reactions. In this review, we summarize the representative advancements in theoretical studies on transition-metal-catalyzed reductive coupling reactions and systematically elaborate the mechanisms for the key steps of reductive coupling reactions. The activation modes of electrophiles and the deep insights of selectivity generation are mechanistically discussed. In addition, the mechanism of the reduction of high-oxidation-state catalysts and further construction of new chemical bonds are also described in detail.
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Affiliation(s)
- Abing Duan
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, China.
| | - Fengjiao Xiao
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, China.
| | - Yu Lan
- Green Catalysis Center, and College of Chemistry, Zhengzhou University, Zhengzhou, Henan, China. .,School of Chemistry and Chemical Engineering, Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing 400030, China
| | - Linbin Niu
- Green Catalysis Center, and College of Chemistry, Zhengzhou University, Zhengzhou, Henan, China.
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21
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Chaussy L, Hagebaum-Reignier D, Humbel S, Nava P. Accurate computed singlet-triplet energy differences for cobalt systems: implication for two-state reactivity. Phys Chem Chem Phys 2022; 24:21841-21852. [PMID: 36065755 DOI: 10.1039/d2cp03291k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Accurate singlet-triplet energy differences for cobalt and rhodium complexes were calculated by using several wave function methods, such as MRCISD, CASPT2, CCSD(T) and BCCD(T). Relaxed energy differences were obtained by considering the singlet and triplet complexes, each at the minimum of their potential energy surfaces. Active spaces for multireference calculations were carefully checked to provide accurate results. The considered systems are built by increasing progressively the first coordination sphere around the metal. We included in our set two CpCoX complexes (Cp = cyclopentadienyl, X = alkenyl ligand), which have been suggested as intermediates in cycloaddition reactions. Indeed, cobalt systems have been used for more than a decade as active species in this kind of transformations, for which a two-state reactivity has been proposed. Most of the considered systems display a triplet ground state. However, in the case of a reaction intermediate, while a triplet ground state was predicted on the basis of Density Functional Theory results, our calculations suggest a singlet ground state. This stems from the competition between the exchange term (stabilising the triplet) and the accessibility of an intramolecular coordination (stabilising the singlet). This finding has an impact on the general mechanism of the cycloaddition reaction. Analogous rhodium systems were also studied and, as expected, they have a larger tendency to electron pairing than cobalt species.
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Affiliation(s)
- Léo Chaussy
- Aix-Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France.
| | | | - Stéphane Humbel
- Aix-Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France.
| | - Paola Nava
- Aix-Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France.
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22
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Mirzanejad A, Varganov SA. The role of the intermediate triplet state in iron-catalyzed multi-state C-H activation. Phys Chem Chem Phys 2022; 24:20721-20727. [PMID: 36018581 DOI: 10.1039/d2cp02733j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Efficient activation and functionalization of the C-H bond under mild conditions are of a great interest in chemical synthesis. We investigate the previously proposed spin-accelerated activation of the C(sp2)-H bond by a Fe(II)-based catalyst to clarify the role of the intermediate triplet state in the reaction mechanism. High-level electronic structure calculations on a small model of a catalytic system utilizing the coupled cluster with the single, double, and perturbative triple excitations [CCSD(T)] are used to select the density functional for the full-size model. Our analysis indicates that the previously proposed two-state quintet-singlet reaction pathway is unlikely to be efficient due to a very weak spin-orbit coupling between these two spin states. We propose a more favorable multi-state quintet-triplet-singlet reaction pathway and discuss the importance of the intermediate triplet state. This triplet state facilitates a spin-accelerated reaction mechanism by strongly coupling to both quintet and singlet states. Our calculations show that the C-H bond activation through the proposed quintet-triplet-singlet reaction pathway is more thermodynamically favorable than the single-state quintet and two-state singlet-quintet mechanisms.
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Affiliation(s)
- Amir Mirzanejad
- Department of Chemistry, University of Nevada, Reno, 1664 N. Virginia Street, Reno, NV 89557-0216, USA.
| | - Sergey A Varganov
- Department of Chemistry, University of Nevada, Reno, 1664 N. Virginia Street, Reno, NV 89557-0216, USA.
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23
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Li C, Lei Y, Li H, Ni M, Yang D, Xie X, Wang Y, Ma H, Xu W, Xia X. Suppressing Non‐Radiative Relaxation through Single‐Atom Metal Modification for Enhanced Fluorescence Efficiency in Molybdenum Disulfide Quantum Dots. Angew Chem Int Ed Engl 2022; 61:e202207300. [DOI: 10.1002/anie.202207300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Indexed: 11/12/2022]
Affiliation(s)
- Chao‐Rui Li
- State Key Laboratory of Analytical Chemistry for Life Science School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 P. R. China
| | - Yu‐Li Lei
- Key Laboratory of Mesoscopic Chemistry of MOE School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 P. R. China
| | - Hua Li
- Key Laboratory of Mesoscopic Chemistry of MOE School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 P. R. China
| | - Miao Ni
- State Key Laboratory of Analytical Chemistry for Life Science School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 P. R. China
| | - Dong‐Rui Yang
- State Key Laboratory of Analytical Chemistry for Life Science School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 P. R. China
| | - Xiao‐Yu Xie
- Key Laboratory of Mesoscopic Chemistry of MOE School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 P. R. China
| | - Yuan‐Fan Wang
- Key Laboratory of Mesoscopic Chemistry of MOE School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 P. R. China
| | - Hai‐Bo Ma
- Key Laboratory of Mesoscopic Chemistry of MOE School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 P. R. China
| | - Wei‐Gao Xu
- Key Laboratory of Mesoscopic Chemistry of MOE School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 P. R. China
| | - Xing‐Hua Xia
- State Key Laboratory of Analytical Chemistry for Life Science School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 P. R. China
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24
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Li CR, Lei YL, Li H, Ni M, Yang DR, Xie XY, Wang YF, Ma HB, Xu WG, Xia X. Suppressing Non‐Radiative Relaxation through Single‐Atom Metal Modification for Enhanced Fluorescence Efficiency in Molybdenum Disulfide Quantum Dots. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202207300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Affiliation(s)
- Chao-Rui Li
- Nanjing University School of Chemistry and Chemical Engineering CHINA
| | - Yu-Li Lei
- Nanjing University School of Chemistry and Chemical Engineering CHINA
| | - Hua Li
- Nanjing University School of Chemistry and Chemical Engineering CHINA
| | - Miao Ni
- Nanjing University School of Chemistry and Chemical Engineering CHINA
| | - Dong-Rui Yang
- Nanjing University School of Chemistry and Chemical Engineering CHINA
| | - Xiao-Yu Xie
- Nanjing University School of Chemistry and Chemical Engineering CHINA
| | - Yuan-Fan Wang
- Nanjing University School of Chemistry and Chemical Engineering CHINA
| | - Hai-Bo Ma
- Nanjing University School of Chemistry and Chemical Engineering CHINA
| | - Wei-Gao Xu
- Nanjing University School of Chemistry and Chemical Engineering CHINA
| | - Xinghua Xia
- Nanjing University School of Chemistry and Chemical Engineering 163 Xianlin Road 210093 Nanjing CHINA
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25
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Boggio-Pasqua M, Jacquemin DM, Loos PF. Benchmarking CASPT3 Vertical Excitation Energies. J Chem Phys 2022; 157:014103. [DOI: 10.1063/5.0095887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Based on 280 reference vertical transition energies of various natures (singlet, triplet, valence, Rydberg, n → π∗, π → π∗, and double excitations) extracted from the QUEST database, we assess the accuracy of third-order multireference perturbation theory, CASPT3, in the context of molecular excited states. When one applies the disputable ionization- potential-electron-affinity (IPEA) shift, we show that CASPT3 provides a similar accuracy as its second-order counterpart, CASPT2, with the same mean absolute error of 0.11 eV. However, as already reported, we also observe that the accuracy of CASPT3 is almost insensitive to the IPEA shift, irrespective of the transition type and system size, with a small reduction of the mean absolute error to 0.09 eV when the IPEA shift is switched off.
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Affiliation(s)
| | - Denis M. Jacquemin
- Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation, University of Nantes, France
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26
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Han J, Zhao R, Guo Y, Qu Z, Gao J. Minimal Active Space for Diradicals Using Multistate Density Functional Theory. Molecules 2022; 27:3466. [PMID: 35684406 PMCID: PMC9182067 DOI: 10.3390/molecules27113466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2022] [Revised: 05/18/2022] [Accepted: 05/20/2022] [Indexed: 11/16/2022] Open
Abstract
This work explores the electronic structure as well as the reactivity of singlet diradicals, making use of multistate density functional theory (MSDFT). In particular, we show that a minimal active space of two electrons in two orbitals is adequate to treat the relative energies of the singlet and triplet adiabatic ground state as well as the first singlet excited state in many cases. This is plausible because dynamic correlation is included in the first place in the optimization of orbitals in each determinant state via block-localized Kohn-Sham density functional theory. In addition, molecular fragment, i.e., block-localized Kohn-Sham orbitals, are optimized separately for each determinant, providing a variational diabatic representation of valence bond-like states, which are subsequently used in nonorthogonal state interactions (NOSIs). The computational procedure and its performance are illustrated on some prototypical diradical species. It is shown that NOSI calculations in MSDFT can be used to model bond dissociation and hydrogen-atom transfer reactions, employing a minimal number of configuration state functions as the basis states. For p- and s-types of diradicals, the closed-shell diradicals are found to be more reactive than the open-shell ones due to a larger diabatic coupling with the final product state. Such a diabatic representation may be useful to define reaction coordinates for electron transfer, proton transfer and coupled electron and proton transfer reactions in condensed-phase simulations.
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Affiliation(s)
- Jingting Han
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University, Changchun 130023, China; (J.H.); (R.Z.); (Y.G.)
| | - Ruoqi Zhao
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University, Changchun 130023, China; (J.H.); (R.Z.); (Y.G.)
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518055, China
| | - Yujie Guo
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University, Changchun 130023, China; (J.H.); (R.Z.); (Y.G.)
| | - Zexing Qu
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University, Changchun 130023, China; (J.H.); (R.Z.); (Y.G.)
| | - Jiali Gao
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518055, China
- Beijing (Peking) University Shenzhen Graduate School, Shenzhen 518055, China
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, MN 55455, USA
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27
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Vitale E, Li Manni G, Alavi A, Kats D. FCIQMC-Tailored Distinguishable Cluster Approach: Open-Shell Systems. J Chem Theory Comput 2022; 18:3427-3437. [PMID: 35522217 PMCID: PMC9202306 DOI: 10.1021/acs.jctc.2c00059] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
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A recently proposed
tailored approach based on the distinguishable
cluster method and the stochastic FCI solver, FCIQMC [J. Chem.
Theory Comput. 2020, 16, 5621], is extended to open-shell
molecular systems. The method is employed to calculate spin gaps of
various Fe(II) complexes, including a Fe(II) porphyrin model system.
Both distinguishable cluster and fully relaxed CASSCF natural orbitals
were used in this work as reference for the subsequent tailored distinguishable
cluster calculations. The distinguishable cluster natural orbitals
occupation numbers were also used as an aid to the selection of the
active space. The effect of the active space sizes and of the explicit
correlation correction (F12) onto the predicted spin gaps is investigated.
The tailored distinguishable cluster with singles and doubles yields
consistently more accurate results compared to the tailored coupled
cluster with singles and doubles.
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Affiliation(s)
- Eugenio Vitale
- Max Planck Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Giovanni Li Manni
- Max Planck Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Ali Alavi
- Max Planck Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany.,Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Daniel Kats
- Max Planck Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
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28
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Bhattacharjee S, Isegawa M, Garcia-Ratés M, Neese F, Pantazis DA. Ionization Energies and Redox Potentials of Hydrated Transition Metal Ions: Evaluation of Domain-Based Local Pair Natural Orbital Coupled Cluster Approaches. J Chem Theory Comput 2022; 18:1619-1632. [PMID: 35191695 PMCID: PMC8908766 DOI: 10.1021/acs.jctc.1c01267] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
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Hydrated transition
metal ions are prototypical systems that can
be used to model properties of transition metals in complex chemical
environments. These seemingly simple systems present challenges for
computational chemistry and are thus crucial in evaluations of quantum
chemical methods for spin-state and redox energetics. In this work,
we explore the applicability of the domain-based pair natural orbital
implementation of coupled cluster (DLPNO-CC) theory to the calculation
of ionization energies and redox potentials for hydrated ions of all
first transition row (3d) metals in the 2+/3+ oxidation states, in
connection with various solvation approaches. In terms of model definition,
we investigate the construction of a minimally explicitly hydrated
quantum cluster with a first and second hydration layer. We report
on the convergence with respect to the coupled cluster expansion and
the PNO space, as well as on the role of perturbative triple excitations.
A recent implementation of the conductor-like polarizable continuum
model (CPCM) for the DLPNO-CC approach is employed to determine self-consistent
redox potentials at the coupled cluster level. Our results establish
conditions for the convergence of DLPNO-CCSD(T) energetics and stress
the absolute necessity to explicitly consider the second solvation
sphere even when CPCM is used. The achievable accuracy for redox potentials
of a practical DLPNO-based approach is, on average, 0.13 V. Furthermore,
multilayer approaches that combine a higher-level DLPNO-CCSD(T) description
of the first solvation sphere with a lower-level description of the
second solvation layer are investigated. The present work establishes
optimal and transferable methodological choices for employing DLPNO-based
coupled cluster theory, the associated CPCM implementation, and cost-efficient
multilayer derivatives of the approach for open-shell transition metal
systems in complex environments.
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Affiliation(s)
- Sinjini Bhattacharjee
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Miho Isegawa
- International Institute for Carbon-Neutral Energy Research (WPI-I2CNER), Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Miquel Garcia-Ratés
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Dimitrios A Pantazis
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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29
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Graham DS, Wen X, Chulhai DV, Goodpaster J. Huzinaga Projection Embedding for Efficient and Accurate Energies of Systems with Localized Spin-densities. J Chem Phys 2022; 156:054112. [DOI: 10.1063/5.0076493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
| | - Xuelan Wen
- Department of Chemistry, University of Minnesota Twin Cities, United States of America
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30
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Kumar M, Dar MA, Katiyar A, Agrawal R, Shenai P, Srinivasan V. Role of Magnetization on Catalytic Pathways of Non-Oxidative Methane Activation on Neutral Iron Carbide Clusters. Phys Chem Chem Phys 2022; 24:11668-11679. [DOI: 10.1039/d1cp05769c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Methane has emerged as a promising fuel due to its abundance and clean combustion properties. It is also a raw material for various value added chemicals. However, the conversion of...
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31
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Duan C, Chen S, Taylor MG, Liu F, Kulik HJ. Machine learning to tame divergent density functional approximations: a new path to consensus materials design principles. Chem Sci 2021; 12:13021-13036. [PMID: 34745533 PMCID: PMC8513898 DOI: 10.1039/d1sc03701c] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Accepted: 09/01/2021] [Indexed: 01/17/2023] Open
Abstract
Virtual high-throughput screening (VHTS) with density functional theory (DFT) and machine-learning (ML)-acceleration is essential in rapid materials discovery. By necessity, efficient DFT-based workflows are carried out with a single density functional approximation (DFA). Nevertheless, properties evaluated with different DFAs can be expected to disagree for cases with challenging electronic structure (e.g., open-shell transition-metal complexes, TMCs) for which rapid screening is most needed and accurate benchmarks are often unavailable. To quantify the effect of DFA bias, we introduce an approach to rapidly obtain property predictions from 23 representative DFAs spanning multiple families, “rungs” (e.g., semi-local to double hybrid) and basis sets on over 2000 TMCs. Although computed property values (e.g., spin state splitting and frontier orbital gap) differ by DFA, high linear correlations persist across all DFAs. We train independent ML models for each DFA and observe convergent trends in feature importance, providing DFA-invariant, universal design rules. We devise a strategy to train artificial neural network (ANN) models informed by all 23 DFAs and use them to predict properties (e.g., spin-splitting energy) of over 187k TMCs. By requiring consensus of the ANN-predicted DFA properties, we improve correspondence of computational lead compounds with literature-mined, experimental compounds over the typically employed single-DFA approach. Machine learning (ML)-based feature analysis reveals universal design rules regardless of density functional choices. Using the consensus among multiple functionals, we identify robust lead complexes in ML-accelerated chemical discovery.![]()
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Affiliation(s)
- Chenru Duan
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA +1-617-253-4584.,Department of Chemistry, Massachusetts Institute of Technology Cambridge MA 02139 USA
| | - Shuxin Chen
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA +1-617-253-4584.,Department of Chemistry, Massachusetts Institute of Technology Cambridge MA 02139 USA
| | - Michael G Taylor
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA +1-617-253-4584
| | - Fang Liu
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA +1-617-253-4584
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA +1-617-253-4584
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32
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Mariano LA, Vlaisavljevich B, Poloni R. Improved Spin-State Energy Differences of Fe(II) Molecular and Crystalline Complexes via the Hubbard U-Corrected Density. J Chem Theory Comput 2021; 17:2807-2816. [PMID: 33831303 DOI: 10.1021/acs.jctc.1c00034] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We recently showed that the DFT+U approach with a linear-response U yields adiabatic energy differences biased toward high spin [Mariano et al. J. Chem. Theory Comput. 2020, 16, 6755-6762]. Such bias is removed here by employing a density-corrected DFT approach where the PBE functional is evaluated on the Hubbard U-corrected density. The adiabatic energy differences of six Fe(II) molecular complexes computed using this approach, named PBE[U] here, are in excellent agreement with coupled cluster-corrected CASPT2 values for both weak- and strong-field ligands resulting in a mean absolute error (MAE) of 0.44 eV, smaller than that of the recently proposed Hartree-Fock density-corrected DFT (1.22 eV) and any other tested functional, including the best performer TPSSh (0.49 eV). We take advantage of the computational efficiency of this approach and compute the adiabatic energy differences of five molecular crystals using PBE[U] with periodic boundary conditions. The results show, again, an excellent agreement (MAE = 0.07 eV) with experimentally extracted values and a superior performance compared with the best performers M06-L (MAE = 0.08 eV) and TPSSh (MAE = 0.31 eV) computed on molecular fragments.
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Affiliation(s)
- Lorenzo A Mariano
- University Grenoble Alpes, CNRS, Grenoble-INP, SIMaP, F-38042 Grenoble, France
| | - Bess Vlaisavljevich
- Department of Chemistry, University of South Dakota, Vermillion, South Dakota 57069, United States
| | - Roberta Poloni
- University Grenoble Alpes, CNRS, Grenoble-INP, SIMaP, F-38042 Grenoble, France
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33
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Broclawik E, Kozyra P, Mitoraj M, Radoń M, Rejmak P. Zeolites at the Molecular Level: What Can Be Learned from Molecular Modeling. Molecules 2021; 26:molecules26061511. [PMID: 33801999 PMCID: PMC8001918 DOI: 10.3390/molecules26061511] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 02/26/2021] [Accepted: 03/02/2021] [Indexed: 11/16/2022] Open
Abstract
This review puts the development of molecular modeling methods in the context of their applications to zeolitic active sites. We attempt to highlight the utmost necessity of close cooperation between theory and experiment, resulting both in advances in computational methods and in progress in experimental techniques.
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Affiliation(s)
- Ewa Broclawik
- Jerzy Haber Institute of Catalysis PAS, Niezapominajek 8, 30-239 Krakow, Poland
- Correspondence:
| | - Paweł Kozyra
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland; (P.K.); (M.M.); (M.R.)
| | - Mariusz Mitoraj
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland; (P.K.); (M.M.); (M.R.)
| | - Mariusz Radoń
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland; (P.K.); (M.M.); (M.R.)
| | - Paweł Rejmak
- Laboratory of X-ray and Electron Microscopy Research, Institute of Physics Polish Academy of Sciences, Al. Lotnikow 32/46, 02-668 Warsaw, Poland;
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34
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Ning J, Truhlar DG. Spin-Orbit Coupling Changes the Identity of the Hyper-Open-Shell Ground State of Ce +, and the Bond Dissociation Energy of CeH + Proves to Be Challenging for Theory. J Chem Theory Comput 2021; 17:1421-1434. [PMID: 33576629 DOI: 10.1021/acs.jctc.0c01124] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Cerium (Ce) plays important roles in catalysis. Its position in the sixth period of the periodic table leads to spin-orbit coupling (SOC) and other open-shell effects that make the quantum mechanical calculation of cerium compounds challenging. In this work, we investigated the low-lying spin states of Ce+ and the bond energy of CeH+, both by multiconfigurational methods, in particular, SA-CASSCF, MC-PDFT, CASPT2, XMS-PDFT, and XMS-CASPT2, and by single-configurational methods, namely, Hartree-Fock theory and unrestricted Kohn-Sham density functional theory with 34 choices of the exchange-correlation functional. We found that only CASPT2, XMS-CASPT2, and SA-CASSCF (among the five multiconfigurational methods) and GAM, HCTH, SOGGA11, and OreLYP (among the 35 single-configuration methods) successfully predict that the SOC-free ground spin state of Ce+ is a doublet state, and CASPT2 and GAM give the most accurate multireference and single-reference calculations, respectively, of the excitation energy of the first SOC-free excited state for Ce+. We calculated that the ground doublet state of Ce+ is an intra-atomic hyper-open-shell state. We calculated the spin-orbit energy (ESO) of Ce+ by the five multiconfigurational methods and found that ESO calculated by CASPT2 is the closest to the experimental value. Taking advantage of the availability of an experimental D0 for CeH+ as a way to provide a unique test of theory, we showed that all the multiconfigurational methods overestimate D0 by at least 246 meV (5.7 kcal/mol), and only three functionals, namely, SOGGA, MN15, and GAM, have an error of D0 that is less than 200 meV (5 kcal/mol).
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Affiliation(s)
- Jiaxin Ning
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Donald G Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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35
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Farcaş AA, Bende A. Theoretical modeling of the singlet-triplet spin transition in different Ni(II)-diketo-pyrphyrin-based metal-ligand octahedral complexes. Phys Chem Chem Phys 2021; 23:4784-4795. [PMID: 33599640 DOI: 10.1039/d0cp05366j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The structural stability, charge transfer effects and strength of the spin-orbit couplings in different Ni(ii)-ligand complexes have been studied at the DFT (B3LYP and CAM-B3LYP) and coupled cluster (DLPNO-CCSD(T)) levels of theory. Accordingly, two different, porphyrin- and diketo-pyrphyrin-based four-coordination macrocycles as planar ligands as well as pyridine (or pyrrole) and mesylate anion molecular groups as vertical ligands were considered in order to build metal-organic complexes with octahedral coordination configurations. For each molecular system, the identification of equilibrium geometries and the intersystem crossing (the minimum energy crossing) points between the potential energy surfaces of the singlet and triplet spin states is followed by computing the spin-orbit couplings between the two spin states. Structures, based on the diketo-pyrphyrin macrocycle as the planar ligand, show stronger six-coordination metal-organic complexes due to the extra electrostatic interaction between the positively charged central metal cation and the negatively charged vertical ligands. The results also show that the magnitude of the spin-orbit coupling is influenced by the atomic positions of deprotonations of the ligands, and implicitly the direction of the charge transfer between the ligand and the central metal ion.
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Affiliation(s)
- Alex-Adrian Farcaş
- Faculty of Physics, "Babeş-Bolyai" University, Mihail Kogalniceanu Street No. 1, Ro-400084 Cluj-Napoca, Romania
| | - Attila Bende
- Molecular and Biomolecular Physics Department, National Institute for Research and Development of Isotopic and Molecular Technologies, Donat Street, No. 67-103, Ro-400293 Cluj-Napoca, Romania.
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36
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Drabik G, Szklarzewicz J, Radoń M. Spin-state energetics of metallocenes: How do best wave function and density functional theory results compare with the experimental data? Phys Chem Chem Phys 2021; 23:151-172. [PMID: 33313617 DOI: 10.1039/d0cp04727a] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
We benchmark the accuracy of quantum-chemical methods, including wave function theory methods [coupled cluster theory at the CCSD(T) level, multiconfigurational perturbation-theory (CASPT2, NEVPT2) and internally contracted multireference configuration interaction (MRCI)] and 30 density functional theory (DFT) approximations, in reproducing the spin-state splittings of metallocenes. The reference values of the electronic energy differences are derived from the experimental spin-crossover enthalpy for manganocene and the spectral data of singlet-triplet transitions for ruthenocene, ferrocene, and cobaltocenium. For ferrocene and cobaltocenium we revise the previous experimental interpretations regarding the lowest triplet energy; our argument is based on the comparison with the lowest singlet excitation energy and herein reported, carefully determined absorption spectrum of ferrocene. When deriving vertical energies from the experimental band maxima, we go beyond the routine vertical energy approximation by introducing vibronic corrections based on simulated vibrational envelopes. The benchmarking result confirms the high accuracy of the CCSD(T) method (in particular, for UCCSD(T) based on Hartree-Fock orbitals we find for our dataset: maximum error 0.12 eV, weighted mean absolute error 0.07 eV, weighted mean signed error 0.01 eV). The high accuracy of the single-reference method is corroborated by the analysis of a multiconfigurational character of the complete active space wave function for the triplet state of ferrocene. On the DFT side, our results confirm the non-universality problem with approximate functionals. The present study is an important step toward establishing an extensive and representative benchmark set of experiment-derived spin-state energetics for transition metal complexes.
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Affiliation(s)
- Gabriela Drabik
- Faculty of Chemistry, Jagiellonian University, ul. Gronostajowa 2, 30-387 Kraków, Poland.
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37
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Stepanovic S, Lai R, Elstner M, Gruden M, Garcia-Fernandez P, Cui Q. Improvement of d-d interactions in density functional tight binding for transition metal ions with a ligand field model: assessment of a DFTB3+ U model on nickel coordination compounds. Phys Chem Chem Phys 2020; 22:27084-27095. [PMID: 33220674 PMCID: PMC7737908 DOI: 10.1039/d0cp04694a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
To improve the description of interactions among the localized d, f electrons in transition metals, we have introduced a ligand-field motivated contribution into the Density Functional Tight Binding (DFTB) model. Referred to as DFTB3+U, the approach treats the d, f electron repulsions with rotationally invariant orbital-orbital interactions and a Hartree-Fock model; this represents a major conceptual improvement over the original DFTB3 approach, which treats the d, f-shell interactions in a highly averaged fashion without orbital level of description. The DFTB3+U approach is tested using a series of nickel compounds that feature Ni(ii) and Ni(iii) oxidation states. By using parameters developed with the original DFTB3 Hamiltonian and empirical +U parameters (F0/2/4 Slater integrals), we observe that the DFTB3+U model indeed provides substantial improvements over the original DFTB3 model for a number of properties of the nickel compounds, including the population and spin polarization of the d-shell, nature of the frontier orbitals, ligand field splitting and the energy different between low and high spin states at OPBE optimized structures. This proof-of-concept study suggests that with self-consistent parameterization of the electronic and +U parameters, the DFTB3+U model can develop into a promising model that can be used to efficiently study reactive events involving transition metals ion condensed phase systems. The methodology can be integrated with other approximate QM methods as well, such as the extended tight binding (xTB) approach.
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Affiliation(s)
- Stepan Stepanovic
- Institute of Physical Chemistry and Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology, D-76131 Karlsruhe, Germany
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Njegoševa 12, 11000, Belgrade, Serbia
| | - Rui Lai
- Departments of Chemistry, Physics, Biomedical Engineering, Boston University, 590 Commonwealth Avenue, Boston, MA 02215, United States
| | - Marcus Elstner
- Institute of Physical Chemistry and Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology, D-76131 Karlsruhe, Germany
| | - Maja Gruden
- University of Belgrade-Faculty of Chemistry, Studentski trg 12-16, 11001 Belgrade, Serbia
| | - Pablo Garcia-Fernandez
- Departamento de Ciencias de la Tierra y Fısica de la Materia Condensada, Universidad de Cantabria, Cantabria Campus Internacional, Avenida de los Castros s/n, 39005 Santander, Spain
| | - Qiang Cui
- Departments of Chemistry, Physics, Biomedical Engineering, Boston University, 590 Commonwealth Avenue, Boston, MA 02215, United States
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38
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Liu F, Duan C, Kulik HJ. Rapid Detection of Strong Correlation with Machine Learning for Transition-Metal Complex High-Throughput Screening. J Phys Chem Lett 2020; 11:8067-8076. [PMID: 32864977 DOI: 10.1021/acs.jpclett.0c02288] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Despite its widespread use in chemical discovery, approximate density functional theory (DFT) is poorly suited to many targets, such as those containing open-shell, 3d transition metals that can be expected to have strong multireference (MR) character. For discovery workflows to be predictive, we need automated, low-cost methods that can distinguish the regions of chemical space where DFT should be applied from those where it should not. We curate more than 4800 open-shell transition-metal complexes up to hundreds of atoms in size from prior high-throughput DFT studies and evaluate affordable, finite-temperature DFT fractional occupation number (FON)-based MR diagnostics. We show that intuitive measures of strong correlation (i.e., the HOMO-LUMO gap) are not predictive of MR character as judged by FON-based diagnostics. Analysis of independently trained machine learning (ML) models to predict HOMO-LUMO gaps and FON-based diagnostics reveals differences in the metal and ligand sensitivity of the two quantities. We use our trained ML models to rapidly evaluate MR character over a space of ∼187000 theoretical complexes, identifying large-scale trends in spin-state-dependent MR character and finding small HOMO-LUMO gap complexes while ensuring low MR character.
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Affiliation(s)
- Fang Liu
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Chenru Duan
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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