Impact of Rigidity on Molecular Self-Assembly

Long but Strong C-C Single Bonds: Challenges for Theory

Theoretical challenges in describing molecules with anomalously long single C-C bonds are analyzed in terms of the relative contributions of stabilizing and destabilizing intramolecular interactions. Diamondoid dimers that are stable despite the presence of C-C bonds up to 1.7 Å long, as well as other bulky molecules stabilized due to intramolecular noncovalent interactions (London dispersions) are discussed. The unexpected stability of highly crowded molecules, such as diamondoid dimers and tert-butyl-substituted hexaphenylethanes, calls for reconsideration of the "steric effect" traditionally thought to destabilize the molecule. Alternatively, "steric attraction" helps to understand bonding in sterically overloaded molecules, whose structural and energetic analysis requires a proper theoretical description of noncovalent interactions.

Synthesis and Functionalization of Isomeric Sesquihomodiamantenes

anti- and syn-sesquihomodiamantenes (SDs) were prepared and structurally characterized. anti-SD and parent sesquihomoadamantene were CH-bond functionalized by utilizing a phase-transfer protocol. The density functional theory-computed ionization potentials of unsaturated diamondoid dimers correlate well with the experimental oxidation potentials obtained from cyclic voltammetry. Similar geometries ensue for both the reduced and ionized SD states, whose persistence is supported by the β-hydrogen's spatial sheltering. This makes SDs promising building blocks for the construction of diamond materials with high stability and carrier mobility.

Influence of Polyfluorinated Side Chains and Soft-Template Method on the Surface Morphologies and Hydrophobic Properties of Electrodeposited Films from Fluorene Bridged Dicarbazole Monomers

A clear case of relationship between the monomer molecular structure and the capability of tuning the morphology of electrodeposited gas bubbles template polymer thin films is shown. To this end, a series of fluorene-bridged dicarbazole derivatives containing either linear or terminally branched polyfluorinated side chains connected to the fluorene subunit were synthesized and their electrochemical properties were investigated. The new compounds underwent electrochemical polymerization over indium tin oxide electrodes to give hydrophobic films with nanostructural and morphological properties strongly dependent on the nature of the side chains. Gas bubbles templated electropolymerization was next achieved by the addition of tiny amounts of water to the monomer solutions, without using surfactants. Within the investigated set of molecules, the nanostructural properties of the soft-templated films obtained from monomers bearing linear side chains could be fine-tuned by adjusting electrochemical parameters, leading to superhydrophobic surfaces.

Supramolecular structures of self-assembled oligomers under confinement

We study the molecular origin of a prepeak (PP) observed at low q values in the structure factors of three oligomers in a bulk (poly(mercaptopropyl)methylsiloxane, PMMS, poly(methylmercaptopropyl)-grafted-hexylmethacrylate, PMMS-g-HMA, and poly(methylphenyl)siloxane, PMPS) in order to understand the lowering of the PP intensity detected for oligomers confined in cylindrical pores with low diameter. For this purpose, we use a combination of X-ray diffraction measurements and coarse-grained bead-spring molecular dynamics simulations. Our molecular modelling demonstrated that the planarity of the pendant groups triggers the self-association of oligomers into nanoaggregates. However, the formation of oligomeric nanodomains is not sufficient for building-up the PP. The latter requires spatial disturbance in the arrangement of the side groups of oligomers within clusters. Importantly, our numerical analysis revealed that the increasing degree of the confinement of oligomers limits their aggregation and consequently lowers the amplitude of the PP observed in the experimental data.

Conformational Adaptation of β-Peptide Foldamers for the Formation of Metal-Peptide Frameworks

Metal-coordinated frameworks derived from small peptidic ligands have received much attention thanks to peptides' vast structural and functional diversity. Various peptides with partial conformational preferences have been used to build metal-peptide frameworks, however, the use of conformationally constrained β-peptide foldamers has not been explored yet. Herein we report the first metal-coordination-mediated assembly of β-peptide foldamers with 12-helical folding propensity. The coordination of Ag⁺ to the terminal pyridyl moieties afforded a set of metal-peptide frameworks with unique entangled topologies. Interestingly, formation of the network structures was accompanied by notable conformational distortions of the foldamer ligands. As the first demonstration of new metal-peptide frameworks built from modular β-peptide foldamers, we anticipate that this work will be an important benchmark for further structural evolution and mechanistic investigation.

Surface Activity of Ethoxylate Surfactants with Different Hydrophobic Architectures: The Effect of Layer Substructure on Surface Tension and Adsorption

A series of nonionic ethoxylate surfactants containing different combinations of alkyl, phenyl, and adamantyl units in nine different arrangements, each combined with penta- and hexa-ethylene glycol groups, were synthesized and purified. The surface properties of all of the surfactants were investigated at the air-water (A-W) interface using surface tension (ST) to determine the limiting surface excess (Γ_lim), the limiting surface tension (σ_lim), and the critical micelle concentration (CMC). A smaller selection was investigated at the hydrophilic silica-water interface by neutron reflectometry to obtain the thickness of the adsorbed layer and the total adsorption at the CMC. An unusual and largely unrecognized feature of the ethoxylate group is that it is both hydrophilic and hydrophobic. It was found possible to account for the variation of σ_lim and Γ_lim of all of the adsorbed layers in terms of a balance of the estimated STs of the sublayers forming the overall adsorbed layer, including that of the underlying ethoxylate layer. The values of σ_lim were found to be highest for phenyl- and adamantyl-capped surfactants and lowest mainly when there was more than one methyl group at the surface. However, in terms of the concentration required to reach a given low ST, increasing the number of attached methyl groups was found to be less effective than using a smaller number of better-placed methyl groups. At the solid-liquid interface, adsorption at or above the CMC was in all cases in the form of a fragmented bilayer whose coverage varied approximately linearly with the packing parameter. However, results on the phenyl-capped surfactants showed that the high ST exhibited by these surfactants at the A-W interface becomes a high cohesion energy in the interior of the bilayer and they exhibited significantly higher adsorption than expected from simple packing arguments.

Insights into the molecular properties underlying antibacterial activity of prenylated (iso)flavonoids against MRSA

High resistance towards traditional antibiotics has urged the development of new, natural therapeutics against methicillin-resistant Staphylococcus aureus (MRSA). Prenylated (iso)flavonoids, present mainly in the Fabaceae, can serve as promising candidates. Herein, the anti-MRSA properties of 23 prenylated (iso)flavonoids were assessed in-vitro. The di-prenylated (iso)flavonoids, glabrol (flavanone) and 6,8-diprenyl genistein (isoflavone), together with the mono-prenylated, 4'-O-methyl glabridin (isoflavan), were the most active anti-MRSA compounds (Minimum Inhibitory Concentrations (MIC) ≤ 10 µg/mL, 30 µM). The in-house activity data was complemented with literature data to yield an extended, curated dataset of 67 molecules for the development of robust in-silico prediction models. A QSAR model having a good fit (R²_adj 0.61), low average prediction errors and a good predictive power (Q²) for the training (4% and Q²_LOO 0.57, respectively) and the test set (5% and Q²_test 0.75, respectively) was obtained. Furthermore, the model predicted well the activity of an external validation set (on average 5% prediction errors), as well as the level of activity (low, moderate, high) of prenylated (iso)flavonoids against other Gram-positive bacteria. For the first time, the importance of formal charge, besides hydrophobic volume and hydrogen-bonding, in the anti-MRSA activity was highlighted, thereby suggesting potentially different modes of action of the different prenylated (iso)flavonoids.

Mobile Media Promotes Orientation of 2D/3D Hybrid Lead Halide Perovskite for Efficient Solar Cells

2D/3D hybrid perovskites have shown great environmental stability for use as solar cells. Yet insulating organic cation spacers affect the formation of vertically oriented crystalline grains to hamper carrier transport. To date, the selection of cation spacers is limited because crystal growth kinetics should be strictly obeyed. Here, we adopted a mobile-media-assisted method to fabricate highly oriented 2D/3D hybrid perovskite films, wherein bulky molecules of (C(CH₃)₃NH₃, TBA) are used as cation spacers. We found the compositional volatile salt promote the orientation of perovskite polycrystalline films with various compositions universally. And we obtained efficient solar cells with a photoelectric conversion efficiency (PCE) of 17.38% and a certified PCE of 19.30% based on 2D/3D hybrid perovskites an overall stoichiometry matching n = 10 and 20, respectively, which are one of the highest efficiencies among all 2D/3D hybrid perovskite based solar cells so far. These findings largely broaden the selection category of bulky cations and promote further exploration of more functional organic cations.

London Dispersion in Alkane Solvents

The importance of London dispersion interactions in solution is an ongoing debate. Although the significance of dispersion for structure and stability is widely accepted, the degree of its attenuation in solution is still not properly understood. Quantitative evaluations are derived mostly from computations. Experimental data provide guidelines to include London dispersion in solution phase design. Herein, dispersive interactions were examined with an azobenzene probe. Alkyl substituents in meta positions of the azobenzene core were systematically varied and the effect on the half-lives for the thermally induced Z to E isomerization in several alkane solvents was determined. The results show that intramolecular dispersion is only marginally influenced. In solvents with low surface tension, reduced destabilizing solvent-solvent interactions increase the half-life up to 20 %. Specific individual interactions between alkyl chains on the azobenzene and those of the solvent lead to additional fluctuations of the half-lives. These presumably result from structural changes of the conformer ensemble.

When does entropy promote local organization?

Crowded soft-matter and biological systems organize locally into preferred motifs. Locally-organized motifs in soft systems can, paradoxically, arise from a drive to maximize overall system entropy. Entropy-driven local order has been directly confirmed in model, synthetic colloidal systems, however similar patterns of organization occur in crowded biological systems ranging from the contents of a cell to collections of cells. In biological settings, and in soft matter more broadly, it is unclear whether entropy generically promotes or inhibits local organization. Resolving this is difficult because entropic effects are intrinsically collective, complicating efforts to isolate them. Here, we employ minimal models that artificially restrict system entropy to show that entropy drives systems toward local organization, even when the model system entropy is below reasonable physical bounds. By establishing this bound, our results suggest that entropy generically promotes local organization in crowded soft and biological systems of rigid objects.