1
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Mariano LA, Nguyen VHA, Petersen JB, Björnsson M, Bendix J, Eaton GR, Eaton SS, Lunghi A. The role of electronic excited states in the spin-lattice relaxation of spin-1/2 molecules. SCIENCE ADVANCES 2025; 11:eadr0168. [PMID: 39937899 DOI: 10.1126/sciadv.adr0168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 01/09/2025] [Indexed: 02/14/2025]
Abstract
Magnetic resonance is a prime method for the study of chemical and biological structures and their dynamical processes. The interpretation of many of these experiments relies on understanding how the spin of unpaired electrons exchanges energy with their environment, or lattice, and relaxes to equilibrium. Here, we overcome the common use of effective spin Hamiltonians to describe spin-lattice relaxation in spin-1/2 and apply ab initio open quantum systems theory to their full molecular electronic wavefunction. Simulations for two Cr(V) coordination compounds under this framework show a marked improvement in accuracy and demonstrate that relaxation in spin-1/2 molecules is enabled by virtual transitions to molecular excited states with energy approaching 20,000 cm-1. This work establishes a connection between the original theory of Van Vleck and modern electronic structure methods, ultimately exemplifying the urgency of further advancing an ab initio approach to spin-lattice relaxation.
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Affiliation(s)
- Lorenzo A Mariano
- School of Physics, AMBER and CRANN Institute, Trinity College, Dublin 2, Ireland
| | - Vu Ha Anh Nguyen
- School of Physics, AMBER and CRANN Institute, Trinity College, Dublin 2, Ireland
| | - Jonatan B Petersen
- Department of Chemistry, The University of Manchester, Manchester M13 9PL, UK
| | - Magnus Björnsson
- Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen, Denmark
| | - Jesper Bendix
- Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen, Denmark
| | - Gareth R Eaton
- Department of Chemistry and Biochemistry, University of Denver, Denver, CO 80210, USA
| | - Sandra S Eaton
- Department of Chemistry and Biochemistry, University of Denver, Denver, CO 80210, USA
| | - Alessandro Lunghi
- School of Physics, AMBER and CRANN Institute, Trinity College, Dublin 2, Ireland
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2
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Xu F, Zhang S, Ma L, Hou Y, Li J, Denisenko A, Li Z, Spatz J, Wrachtrup J, Lei H, Cao Y, Wei Q, Chu Z. Quantum-enhanced diamond molecular tension microscopy for quantifying cellular forces. SCIENCE ADVANCES 2024; 10:eadi5300. [PMID: 38266085 PMCID: PMC10807811 DOI: 10.1126/sciadv.adi5300] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Accepted: 12/22/2023] [Indexed: 01/26/2024]
Abstract
The constant interplay and information exchange between cells and the microenvironment are essential to their survival and ability to execute biological functions. To date, a few leading technologies such as traction force microscopy, optical/magnetic tweezers, and molecular tension-based fluorescence microscopy are broadly used in measuring cellular forces. However, the considerable limitations, regarding the sensitivity and ambiguities in data interpretation, are hindering our thorough understanding of mechanobiology. Here, we propose an innovative approach, namely, quantum-enhanced diamond molecular tension microscopy (QDMTM), to precisely quantify the integrin-based cell adhesive forces. Specifically, we construct a force-sensing platform by conjugating the magnetic nanotags labeled, force-responsive polymer to the surface of a diamond membrane containing nitrogen-vacancy centers. Notably, the cellular forces will be converted into detectable magnetic variations in QDMTM. After careful validation, we achieved the quantitative cellular force mapping by correlating measurement with the established theoretical model. We anticipate our method can be routinely used in studies like cell-cell or cell-material interactions and mechanotransduction.
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Affiliation(s)
- Feng Xu
- College of Polymer Science and Engineering, State Key Laboratory of Polymer Materials and Engineering, Sichuan University, Chengdu 610065, China
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pok Fu Lam, Hong Kong, China
| | - Shuxiang Zhang
- College of Polymer Science and Engineering, State Key Laboratory of Polymer Materials and Engineering, Sichuan University, Chengdu 610065, China
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pok Fu Lam, Hong Kong, China
| | - Linjie Ma
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pok Fu Lam, Hong Kong, China
| | - Yong Hou
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pok Fu Lam, Hong Kong, China
| | - Jie Li
- College of Biomass Science and Engineering, Sichuan University, Chengdu 610065, China
| | - Andrej Denisenko
- 3rd Institute of Physics, Research Center SCoPE and IQST, University of Stuttgart, 70569 Stuttgart, Germany
| | - Zifu Li
- National Engineering Research Center for Nanomedicine, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Joachim Spatz
- Department for Cellular Biophysics, Max Planck Institute for Medical Research, Jahnstraße 29, 69120 Heidelberg, Germany
- Institute for Molecular Systems Engineering and Advanced Materials (IMSEAM), University of Heidelberg, Im Neuenheimer Feld 225, 69120 Heidelberg, Germany
| | - Jörg Wrachtrup
- 3rd Institute of Physics, Research Center SCoPE and IQST, University of Stuttgart, 70569 Stuttgart, Germany
- Max Planck Institute for Solid State Research, Stuttgart, Germany
| | - Hai Lei
- National Laboratory of Solid State Microstructures, Department of Physics, Nanjing University, Nanjing 210093, China
| | - Yi Cao
- National Laboratory of Solid State Microstructures, Department of Physics, Nanjing University, Nanjing 210093, China
| | - Qiang Wei
- College of Polymer Science and Engineering, State Key Laboratory of Polymer Materials and Engineering, Sichuan University, Chengdu 610065, China
| | - Zhiqin Chu
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pok Fu Lam, Hong Kong, China
- School of Biomedical Sciences, The University of Hong Kong, Pok Fu Lam, Hong Kong, China
- Advanced Biomedical Instrumentation Centre, Hong Kong Science Park, Shatin, New Territories, Hong Kong, China
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3
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Lu S, Fowler CR, Ream B, Waugh SM, Russell TM, Rohloff JC, Gold L, Cleveland JP, Stoll S. Magnetically Detected Protein Binding Using Spin-Labeled Slow Off-Rate Modified Aptamers. ACS Sens 2023; 8:2219-2227. [PMID: 37300508 DOI: 10.1021/acssensors.3c00112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Recent developments in aptamer chemistry open up opportunities for new tools for protein biosensing. In this work, we present an approach to use immobilized slow off-rate modified aptamers (SOMAmers) site-specifically labeled with a nitroxide radical via azide-alkyne click chemistry as a means for detecting protein binding. Protein binding induces a change in rotational mobility of the spin label, which is detected via solution-state electron paramagnetic resonance (EPR) spectroscopy. We demonstrate the workflow and test the protocol using the SOMAmer SL5 and its protein target, platelet-derived growth factor B (PDGF-BB). In a complete site scan of the nitroxide over the SOMAmer, we determine the rotational mobility of the spin label in the absence and presence of target protein. Several sites with sufficiently tight affinity and large rotational mobility change upon protein binding are identified. We then model a system where the spin-labeled SOMAmer assay is combined with fluorescence detection via diamond nitrogen-vacancy (NV) center relaxometry. The NV center spin-lattice relaxation time is modulated by the rotational mobility of a proximal spin label and thus responsive to SOMAmer-protein binding. The spin label-mediated assay provides a general approach for transducing protein binding events into magnetically detectable signals.
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Affiliation(s)
- Shutian Lu
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | | | - Brian Ream
- SomaLogic, Boulder, Colorado 80301, United States
| | | | | | | | - Larry Gold
- SomaLogic, Boulder, Colorado 80301, United States
| | | | - Stefan Stoll
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
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4
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Liang L, Wu L, Zheng P, Ding T, Ray K, Barman I. DNA-Patched Nanoparticles for the Self-Assembly of Colloidal Metamaterials. JACS AU 2023; 3:1176-1184. [PMID: 37124309 PMCID: PMC10131209 DOI: 10.1021/jacsau.3c00013] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 03/10/2023] [Accepted: 03/10/2023] [Indexed: 05/03/2023]
Abstract
Colloidal metamaterials are highly desired artificial materials that recapitulate the structure of simple molecules. They exhibit exceptional functionalities conferred by the organization of and specific interaction among constituent elements. Harvesting such exquisite attributes for potential applications necessitates establishing precise control over their structural configuration with high precision. Yet, creating molecule-like small clusters of colloidal metamaterials remains profoundly challenging, as a lack of regioselectively encoded surface chemical heterogeneity prevents specific recognition interactions. Herein, we report a new strategy by harnessing magnetic-bead-assisted DNA cluster transferring to create discretely DNA cluster-patched nanoparticles for the self-assembly of colloidal metamaterials. This strategy affords broad generalizability and scalability for robustly patching DNA clusters on nanoparticles unconstrained by geometrical, dimensional, and compositional complexities commonly encountered in colloidal materials at the nano- and microscale. We direct judiciously patched nanoparticles into a wide variety of nanoassemblies and present a case study demonstrating the distinct metamaterial properties in enhancing the spontaneous emission of diamond nanoparticles. This newly invented strategy is readily implementable and extendable to construct a palette of structurally sophisticated and functionality-explicit architecture, paving the way for nanoscale manipulation of colloidal material functionalities with wide-ranging applications for biological sensing, optical engineering, and catalytic chemistry.
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Affiliation(s)
- Le Liang
- The
Institute for Advanced Studies, Wuhan University, Wuhan 430072, China
- Department
of Mechanical Engineering, Johns Hopkins
University, Baltimore, Maryland 21218, United States
| | - Lintong Wu
- Department
of Mechanical Engineering, Johns Hopkins
University, Baltimore, Maryland 21218, United States
| | - Peng Zheng
- Department
of Mechanical Engineering, Johns Hopkins
University, Baltimore, Maryland 21218, United States
| | - Tao Ding
- The
Institute for Advanced Studies, Wuhan University, Wuhan 430072, China
| | - Krishanu Ray
- Division
of Vaccine Research, Institute of Human Virology, Department of Biochemistry
and Molecular Biology, University of Maryland
School of Medicine, Baltimore, Maryland 21201, United States
| | - Ishan Barman
- Department
of Mechanical Engineering, Johns Hopkins
University, Baltimore, Maryland 21218, United States
- Department
of Oncology, Johns Hopkins University School
of Medicine, Baltimore, Maryland 21287, United States
- Department
of Radiology & Radiological Science, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287, United States
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5
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Aslam N, Zhou H, Urbach EK, Turner MJ, Walsworth RL, Lukin MD, Park H. Quantum sensors for biomedical applications. NATURE REVIEWS. PHYSICS 2023; 5:157-169. [PMID: 36776813 PMCID: PMC9896461 DOI: 10.1038/s42254-023-00558-3] [Citation(s) in RCA: 71] [Impact Index Per Article: 35.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Accepted: 01/10/2023] [Indexed: 05/09/2023]
Abstract
Quantum sensors are finding their way from laboratories to the real world, as witnessed by the increasing number of start-ups in this field. The atomic length scale of quantum sensors and their coherence properties enable unprecedented spatial resolution and sensitivity. Biomedical applications could benefit from these quantum technologies, but it is often difficult to evaluate the potential impact of the techniques. This Review sheds light on these questions, presenting the status of quantum sensing applications and discussing their path towards commercialization. The focus is on two promising quantum sensing platforms: optically pumped atomic magnetometers, and nitrogen-vacancy centres in diamond. The broad spectrum of biomedical applications is highlighted by four case studies ranging from brain imaging to single-cell spectroscopy.
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Affiliation(s)
- Nabeel Aslam
- Department of Physics, Harvard University, Cambridge, MA USA
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA USA
- Institute of Condensed Matter Physics, Technische Universität Braunschweig, Braunschweig, Germany
| | - Hengyun Zhou
- Department of Physics, Harvard University, Cambridge, MA USA
| | - Elana K. Urbach
- Department of Physics, Harvard University, Cambridge, MA USA
| | - Matthew J. Turner
- Quantum Technology Center, University of Maryland, College Park, MD USA
- Department of Electrical and Computer Engineering, University of Maryland, College Park, MD USA
| | - Ronald L. Walsworth
- Quantum Technology Center, University of Maryland, College Park, MD USA
- Department of Electrical and Computer Engineering, University of Maryland, College Park, MD USA
- Department of Physics, University of Maryland, College Park, MD USA
| | | | - Hongkun Park
- Department of Physics, Harvard University, Cambridge, MA USA
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA USA
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6
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Li C, Soleyman R, Kohandel M, Cappellaro P. SARS-CoV-2 Quantum Sensor Based on Nitrogen-Vacancy Centers in Diamond. NANO LETTERS 2022; 22:43-49. [PMID: 34913700 PMCID: PMC8691455 DOI: 10.1021/acs.nanolett.1c02868] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 12/04/2021] [Indexed: 05/05/2023]
Abstract
The development of highly sensitive and rapid biosensing tools targeted to the highly contagious virus SARS-CoV-2 is critical to tackling the COVID-19 pandemic. Quantum sensors can play an important role because of their superior sensitivity and fast improvements in recent years. Here we propose a molecular transducer designed for nitrogen-vacancy (NV) centers in nanodiamonds, translating the presence of SARS-CoV-2 RNA into an unambiguous magnetic noise signal that can be optically read out. We evaluate the performance of the hybrid sensor, including its sensitivity and false negative rate, and compare it to widespread diagnostic methods. The proposed method is fast and promises to reach a sensitivity down to a few hundreds of RNA copies with false negative rate less than 1%. The proposed hybrid sensor can be further implemented with different solid-state defects and substrates, generalized to diagnose other RNA viruses, and integrated with CRISPR technology.
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Affiliation(s)
- Changhao Li
- Research Laboratory of Electronics and Department of
Nuclear Science and Engineering, Massachusetts Institute of
Technology, Cambridge, Massachusetts 02139, United
States
| | - Rouhollah Soleyman
- Department of Applied Mathematics,
University of Waterloo, Waterloo, Ontario N2L 3G1,
Canada
| | - Mohammad Kohandel
- Department of Applied Mathematics,
University of Waterloo, Waterloo, Ontario N2L 3G1,
Canada
| | - Paola Cappellaro
- Research Laboratory of Electronics and Department of
Nuclear Science and Engineering, Massachusetts Institute of
Technology, Cambridge, Massachusetts 02139, United
States
- Department of Physics, Massachusetts
Institute of Technology, Cambridge, Massachusetts 02139, United
States
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7
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Wang G, Li C, Cappellaro P. Observation of Symmetry-Protected Selection Rules in Periodically Driven Quantum Systems. PHYSICAL REVIEW LETTERS 2021; 127:140604. [PMID: 34652183 DOI: 10.1103/physrevlett.127.140604] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 08/09/2021] [Accepted: 09/09/2021] [Indexed: 06/13/2023]
Abstract
Periodically driven (Floquet) quantum systems have recently been a focus of nonequilibrium physics by virtue of their rich dynamics. Time-periodic systems not only exhibit symmetries that resemble those in spatially periodic systems, but also display novel behavior that arises from symmetry breaking. Characterization of such dynamical symmetries is crucial, but often challenging due to limited driving strength and lack of an experimentally accessible characterization technique. Here, we show how to reveal dynamical symmetries, namely, parity, rotation, and particle-hole symmetries, by observing symmetry-induced Floquet selection rules. Notably, we exploit modulated driving to reach the strong light-matter coupling regime, and we introduce a protocol to experimentally extract the transition matrix elements between Floquet states from the system coherent evolution. By using nitrogen-vacancy centers in diamond as an experimental test bed, we execute our protocol to observe symmetry-protected dark states and dark bands, and coherent destruction of tunneling. Our work shows how one can exploit the quantum control toolkit to study dynamical symmetries that arise in the topological phases of strongly driven Floquet systems.
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Affiliation(s)
- Guoqing Wang
- Research Laboratory of Electronics and Department of Nuclear Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Changhao Li
- Research Laboratory of Electronics and Department of Nuclear Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Paola Cappellaro
- Research Laboratory of Electronics and Department of Nuclear Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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8
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Zhang T, Pramanik G, Zhang K, Gulka M, Wang L, Jing J, Xu F, Li Z, Wei Q, Cigler P, Chu Z. Toward Quantitative Bio-sensing with Nitrogen-Vacancy Center in Diamond. ACS Sens 2021; 6:2077-2107. [PMID: 34038091 DOI: 10.1021/acssensors.1c00415] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The long-dreamed-of capability of monitoring the molecular machinery in living systems has not been realized yet, mainly due to the technical limitations of current sensing technologies. However, recently emerging quantum sensors are showing great promise for molecular detection and imaging. One of such sensing qubits is the nitrogen-vacancy (NV) center, a photoluminescent impurity in a diamond lattice with unique room-temperature optical and spin properties. This atomic-sized quantum emitter has the ability to quantitatively measure nanoscale electromagnetic fields via optical means at ambient conditions. Moreover, the unlimited photostability of NV centers, combined with the excellent diamond biocompatibility and the possibility of diamond nanoparticles internalization into the living cells, makes NV-based sensors one of the most promising and versatile platforms for various life-science applications. In this review, we will summarize the latest developments of NV-based quantum sensing with a focus on biomedical applications, including measurements of magnetic biomaterials, intracellular temperature, localized physiological species, action potentials, and electronic and nuclear spins. We will also outline the main unresolved challenges and provide future perspectives of many promising aspects of NV-based bio-sensing.
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Affiliation(s)
- Tongtong Zhang
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Goutam Pramanik
- UGC DAE Consortium for Scientific Research, Kolkata Centre, Sector III, LB-8, Bidhan Nagar, Kolkata 700106, India
| | - Kai Zhang
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Michal Gulka
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 166 10 Prague, Czech Republic
| | - Lingzhi Wang
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Jixiang Jing
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Feng Xu
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Zifu Li
- National Engineering Research Center for Nanomedicine, Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Key Laboratory of Bioinorganic Chemistry and Materia Medical, College of Life Science and Technology, Huazhong University of Science and Technology, 430074 Wuhan, China
| | - Qiang Wei
- College of Polymer Science and Engineering, College of Biomedical Engineering, State Key Laboratory of Polymer Materials and Engineering, Sichuan University, 610065 Chengdu, China
| | - Petr Cigler
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 166 10 Prague, Czech Republic
| | - Zhiqin Chu
- Department of Electrical and Electronic Engineering, Joint Appointment with School of Biomedical Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
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