Epitaxial supramolecular assembly of fullerenes formed by using a coronene template on a Au(111) surface in solution

Towards molecular controlled magnonics

Magnonics is an emerging field broadly recognized as a paradigm shift for information technologies based on the use of spin waves. However, the low flexibility and variety of the existing systems still hamper their applications. Herein, we propose an unprecedented chemical approach to magnonics based on the creation of hybrid molecular/2D heterostructures. We analyse the modulation of the magnetic properties, magnon dispersion and spin dynamics of a single layer of CrSBr after the deposition of sublimable organic molecules via first-principles calculations. Our results predict a modulation of magnetic exchange, a shift in the magnon frequencies and an enhancement of their group velocities up to ∼7%. Interestingly, we find a linear correlation between these effects and the donor character of the molecules. This will pave the way for the design of a new class of magnonic materials that can be selectively tailored by a chemical approach.

Molecular planting of a single organothiol into a "gap-site" of a 2D patterned adlayer in an electrochemical environment

The self-assembled inclusion of molecules into two-dimensional (2D) porous networks on surfaces has been extensively studied because 2D functional materials consisting of organic molecules have become an important research topic. However, the isolation of a single molecular thiol remains a challenging goal. Here, we report a method of planting and isolating organothiols onto a 2D patterned organic adlayer at an electrochemical interface. In situ scanning tunneling microscopy revealed that the phase transition of an ovalene adlayer is electrochemically induced and that the gap site created by three ovalene molecules serves as a 2D molecular template to isolate thiol molecules and to standardize the distance between them via the formation of precise selective open spaces, suggesting that electrochemical "molecular planting" opens applications for 2D patterns of isolated single organothiol molecules.

π-Conjugated Macrocycle Host-Guest Coassembly with C60 on HOPG

Two kinds of π-conjugated macrocycles with aggregation-induced emission (AIE) properties were investigated by scanning tunneling microscopy (STM) to elucidate their self-assembly behaviors and interaction with C60 on a highly oriented pyrolytic graphite (HOPG) surface. Both TPEMC and TPEMCS could self-assemble into orderly cavity structures. However, C60 guest molecules could only successfully enter the cavity of TPEMC to form a stable TPEMC + C60 host-guest coassembly structure. Density functional theory (DFT) calculations were also used to interpret the assembly mechanisms. This work disclosed the assembly characteristic of these new types of conjugated macrocyclic compounds, which was helpful to develop new structural porous luminescent materials.

Tilting in coronene layers on Au(111)

Control of molecule adsorption and ordering on metal surfaces is of critical importance for the design and fabrication of molecule-based functional materials. In the present work, the molecule layer structures of coronene on Au(111) and HOPG are studied by combining scanning tunneling microscopy with image analysis techniques to unravel small changes in molecule adsorption geometry. Coronene forms a densely packed layer on Au(111) and HOPG at room temperature, but does not preferentially decorate the herringbone reconstruction. The molecule layer structure is confirmed by histograms of molecule radius and apparent height obtained from STM images using a python based open source code. Annealing at 116 °C initiates a tilting of coronene molecules on Au(111) by about 11 ± 4° which is deduced from statistical image analysis. The structural analysis is combined with an assessment of apparent height modulation with bias voltage to ascertain the reliability of the statistical analysis. Our work illustrates that the combination of advanced image analysis processing and STM images allows one to extract even small changes in a molecule layer structure.

Tuning of 2D Nanographene Adlayers on Au(111) by Electrodeposition of Metal Halide Complexes

The electrodeposition of AuBr₄^- and PtBr₄^2- onto an adlayer of circobiphenyl-a structurally defined nanographene with low symmetry-on a Au(111) electrode was investigated via electrochemical scanning tunneling microscopy (EC-STM) to control and understand the formation of characteristic nanoclusters. By immersing a circobiphenyl-coated Au(111) substrate in a 0.1 mM aqueous AuBr₄^- solution, AuBr₄^- was spontaneously reduced, and a characteristic mixed adlayer consisting of circobiphenyl molecules and Br^- ions with monatomic Au islands was produced on the Au(111) surface. A similar electrodeposition process was performed in an aqueous solution of PtBr₄^2-, and an identical mixed adlayer was obtained with Pt nanoclusters. The electrodeposition of Au and Pt complexes was facilitated by the "negatively charged" reconstructed Au(111) surface, which is stabilized by the formation of a highly ordered circobiphenyl adlayer. EC-STM revealed the formation of characteristic dimers of Pt clusters ranging 2-4 nm in diameter on the circobiphenyl adlayer. Thus, Br^- metal complexes were found to play an important role in controlling the structure and size of a mixed adlayer containing Br^- and the shape of Pt clusters.

Planar Anchoring of C70 Liquid Crystals Using a Covalent Organic Framework Template

The surface-induced anchoring effect is a well-developed technique to control the growth of liquid crystals (LCs). Nevertheless, a defined nanometer-scale template has never been used to induce the anchored growth of LCs with molecular building units. Scanning tunneling microscopy results at the solid/liquid interface reveal that a 2D covalent organic framework (COF-1) can offer an anchoring effect to template C₇₀ molecules into forming several LC mesophases, which cannot be obtained under other conditions. Through comparison with the C₆₀ system, a stepwise breakdown in ordering of C₇₀ LC is observed. The process is described in terms of the effects of molecular anisotropy on the epitaxial growth of molecular crystals. The results suggest that using a surface-confined template to anchor the initial layer of LC molecules can be a modular and potentially broadly applicable approach for organizing molecular mesogens into LCs.

A Supramolecular Approach to the Preparation of Nanographene Adlayers Using Water-Soluble Molecular Capsules

Polycyclic aromatic hydrocarbons (PAHs) are excellent building blocks for the creation of two-dimensional (2D) nanosheets. However, large PAHs tend to exhibit poor or no solubility in organic solvents and water. To overcome this issue, we employed water-soluble micellar capsules consisting of V-shaped amphiphilic molecules. Characteristic electrochemical behavior was observed in 0.1 m H₂ SO₄ in the presence of the water-soluble capsules containing PAHs, such as ovalene, circobiphenyl, and dicoronylene. Furthermore, under these conditions, PAHs were released from the capsules, resulting in the formation of a 2D adlayer of PAHs at the electrochemical interface. Finally, using electrochemical scanning tunneling microscopy, we demonstrate that our molecular containers based on water-soluble molecular capsules allow the facile preparation of 2D PAH adlayers in addition to structurally controlling nanostructure formation on Au surfaces.

Selective Adsorption of Coronene atop the Polycyclic Aromatic Diimide Monolayer Investigated by STM and DFT

The self-assemblies of polycyclic aromatic diimide (PAI) compounds on solid surfaces have attracted great interest because of the versatile and attractive properties for application in organic electronics. Here, a planar guest species (coronene) selectively adsorbs on the helicene-typed PAI1 monolayer strongly, depending on the conjugated cores of these PAIs. PAI1 molecule displays evidently a bowl structure lying on the highly oriented pyrolytic graphite surface due to the torsion of the "C"-shaped fused benzene rings. In combination with density functional theory calculation, the selective inclusion of coronene atop the backbone of the PAI1 array might be attributed to the bowl structure, which provides a groove for immobilizing coronene molecules. On the other planar densely packed arrays, it is difficult to observe the unstable adsorption of coronene. The selective addition of coronene molecules would be a strategic step toward the controllable multicomponent supramolecular architectures.

An STM/STS study of site-selective adsorption of C70 molecules onto arc-shaped BODIPY molecular-networks

In this article, a donor-acceptor H-T-BO/C70 system was studied by a STM/STS method on the molecular level. STM results revealed that H-T-BO, a BODIPY-based derivative, can form a semi-closed molecular network at the 1-phenyloctane/HOPG interface. After introducing C70 fullerene molecules into the network, two kinds of self-assembled nanoarrays were observed by STM. Density functional theory has been utilized to reveal the formation mechanism of the molecular nanoarrays. Scanning Tunneling Spectroscopy (STS) measurements were performed to investigate the electronic properties of H-T-BO/C70 systems. I-V spectra combined with theoretical analyses showed that the introduction of C70 into the H-T-BO system induced a great drop of the band gap, which should be a result of electrons transferring from the donor H-T-BO to the acceptor C70 molecules.

Switching the surface homochiral assembly by surface host–guest chemistry

Surface chirality could be switched by host–guest chemistry.

Hydrogen bonding vs. molecule-surface interactions in 2D self-assembly of [C60]fullerenecarboxylic acids

The adsorption of C₆₀-malonic derivatives C₆₁(CO₂H)₂ and C₆₆(CO₂H)₁₂ on Au(111) and a pentafluorobenzenethiol-modified Au substrate (PFBT@Au) has been investigated using scanning tunneling microscopy (STM) at a liquid-solid interface. Monofunctionalized C₆₁(CO₂H)₂ forms a hexagonal close-packed overlayer on Au(111) and individual aligned dimers on PFBT@Au(111). The difference is attributed to the nature of the substrateC₆₁(CO₂H)₂ interaction (isotropic π-Au bonding vs. anisotropic PFBTCOOH interactions). Surprisingly, in both cases, the directionality of the COOHCOOH motif is compromised in favor of synergistic van der Waals/H bonding interactions. Such van der Waals contacts are geometrically unfeasible in hexafunctionalized C₆₆(CO₂H)₁₂ and its assembly on Au(111) leads to a 2D molecular network controlled exclusively by H bonding. For both molecules, the "free" CO₂H groups on the monolayer surface can engage in out-of-plane H bonding interaction resulting in the epitaxial growth of subsequent molecular layers.

Epitaxial Templating of C60 with a Molecular Monolayer

Commensurate epitaxial monolayers of truxenone on Cu (111) were employed to template the growth of monolayer and bilayer C60. Through the combination of STM imaging and LEED analysis we have demonstrated that C60 forms a commensurate 8 × 8 overlayer on truxenone/Cu (111). Bilayers of C60 retain the 8 × 8 periodicity of templated monolayers and although Kagome lattice arrangements are observed these are explained with combinations of 8 × 8 symmetry.

Fulleropyrrolidine molecular dumbbells act as multi-electron-acceptor triads. Spectroscopic, electrochemical, computational and morphological characterizations

Three novel fulleropyrrolidine dumbbells consisting three electron acceptor moieties joined by alkyl linker displaying tunable electrical and morphological properties were synthesized and characterized.

Electrostatic-interaction-induced molecular deposition of a hybrid bilayer on Au(111): a scanning tunneling microscopy study

Hybrid bilayers consisting of 8-hydroxypyrene-1,3,6-trisulfonic acid trisodium salt (HPTS) and meso-tetra(4-pyridyl)porphine (TPyP) have been successfully constructed on Au(111) and investigated by electrochemical scanning tunneling microscopy (ECSTM). Under the guidance of the electrostatic interaction between negatively charged sulfonate groups and positively charged pyridyl groups, the underlying HPTS arrays act as templates for the deposition of cationic TPyPs, forming two types of TPyP/HPTS complex bilayers. The present work provides a feasible way to fabricate hybrid multilayers on the electrode surface via electrostatic interaction, which has great significance for the design of molecular nanodevices.

Isotopically induced variation in the stability of FMN-wrapped carbon nanotubes

Isotopic, hydrogen-to-deuterium substitution has been an invaluable tool in the characterization of small molecules and biological nanostructures. The natural variability of most inorganic nanomaterials has hindered the use of isotopic substitution in gaining meaningful insights into their structure. The ideal helical wrapping of a flavin mononucleotide (FMN) around (8,6)-SWNTs (single-walled carbon nanotubes) is presently utilized to probe isotopically dependent intermolecular interactions. The facile proton-to-deuterium exchange of the imide group of FMN enabled us to alter the intermolecular stability of the helix depending on the surrounding solvent (i.e., H2O vs D2O). Our studies show that FMN-dispersed (8,6)-SWNTs exhibit greater stability in D2O than in H2O. The higher complex stability in D2O was verified on the basis of (i) FMN helix replacement with SDBS (sodium dodecylbenzenesulfate) and (ii) thermal- and (iii) pH-induced helix dissociation. This is in agreement with the previously observed stronger amide H-bonding of proteins in D2O, and to the best of our knowledge, it demonstrates the architectural fidelity of FMN-wrapped SWNTs, which is expected to enhance the assembly repertoire of carbon nanotubes further.

Adsorption and assembly of ions and organic molecules at electrochemical interfaces: nanoscale aspects

We describe the history of electrochemical scanning tunneling microscopy (STM) and advances made in this field during the past 20 years. In situ STM allows one to monitor various electrode processes, such as the underpotential deposition of copper and silver ions; the specific adsorption of iodine and sulfate/bisulfate ions; electrochemical dissolution processes of silicon and gold single-crystal surfaces in electrolyte solutions; and the molecular assembly of metalloporphyrins, metallophthalocyanines, and fullerenes, at atomic and/or molecular resolution. Furthermore, a laser confocal microscope, combined with a differential interference contrast microscope, enables investigation of the dynamics of electrochemical processes at atomic resolution.

Molecular assembly of fullerene-conjugated phthalocyanine derivative on Au(111) at single molecular level

Molecular adlayers of doubly C(60)-conjugated phthalocyanine derivatives ((C(60))(2)NiPc) were examined on bare and zinc(II) octaethylporphyrin (ZnOEP)- and coronene-modified Au(111) surfaces. Electrochemical scanning tunneling microscopy (EC-STM) has revealed the structure of the (C(60))(2)NiPc adlayer at single molecular level. The (C(60))(2)NiPc adlayer is strongly influenced by the underlying organic layers, i.e., a disordered, a packed structure of (C(60))(2)NiPc was found on a clean Au(111) surface because of the strong interaction between (C(60))(2)NiPc molecule and Au(111) substrate, whereas a single (C(60))(2)NiPc molecule was clearly distinguished both on ZnOEP and coronene adlayers at a low coverage of (C(60))(2)NiPc molecules. The obtained results in the present study suggest that the underlying organic adlayers play an important role in the formation process of the (C(60))(2)NiPc molecule adlayer.

Advances in supramolecularly assembled nanostructures of fullerenes and porphyrins at surfaces

The ‘bottom-up’ strategy is an attractive and promising approach for the construction of nanoarchitectures. Supramolecular assemblies based on non-covalent interactions have been explored in an attempt to control surface properties. In this minireview, we focus on advances made in the past three years in the field of scanning tunneling microscopy (STM) on supramolecular assembly and the function of porphyrins, phthalocyanines, and fullerenes, non-covalently bound on metal single crystal surfaces. Well-defined adlayers, consisting of porphyrin and phthalocyanine for the design of supramolecular nanoarchitectures, supramolecular traps of C 60 on hydrogen bond networks, a unique approach for controlling molecular orientation by a 1:1 supramolecularly assembled film consisting of C 60 and the related derivatives and metallooctaethylporphyrins, and nanoapplications of fullerenes, either induced by tip manipulation or driven by thermal fluctuations at surfaces, were clearly visualized by STM.

Heterogeneous bilayer molecular structure at a liquid-solid interface

Hexaphenylbenzene (HPB) derivatives, HPB-6a and HPB-6pa, can form a supramolecular network which is stabilized by the intermolecular hydrogen bonding between carboxyl group at an octanoic acid/graphite interface. The observation of the heterogeneous bilayer structure formed exclusively by coronene and HPB-6pa at the octanoic acid/graphite interface is reported. Pronounced selectivity of coronene for the supramolecular networks with different sizes is reflected through the formation of bilayer structure for HPB-6pa network with the introduction of coronene as the guest species, indicating stronger interactions between HPB-6pa and coronene.

Electrochemically controlled self-assembled monolayers characterized with molecular and sub-molecular resolution

Self-assembled organization of functional molecules on solid surfaces has developed into a powerful and sophisticated tool for surface chemistry and nanotechnology. A number of reviews on the topic have been available since the mid 1990s. This perspective article aims to focus on recent development in the investigations of electronic structures and assembling dynamics of electrochemically controlled self-assembled monolayers (SAMs) of thiol containing molecules on gold surfaces. A brief introduction is first given and particularly illustrated by a Table summarizing the molecules studied, the surface lattice structures and the experimental operating conditions. This is followed by discussion of two major high-resolution experimental methods, scanning tunnelling microscopy (STM) and single-crystal electrochemistry. In Section 3, we briefly address choice of supporting electrolytes and substrate surfaces, and their effects on the SAM structures. Section 4 constitutes the major body of the article by offering some details of recent studies for the selected cases, including in situ monitoring of assembling dynamics, molecular electronic structures, and the key external factors determining the SAM packing. In Section 5, we give examples of what can be offered by theoretical computations for the detailed understanding of the SAM electronic structures revealed by STM images. A brief summary of the current applications of SAMs in wiring metalloproteins, design and fabrication of sensors, and single-molecule electronics is described in Section 6. In the final two sections (7 and 8), we discuss the current status in understanding of electronic structures and properties of SAMs in electrochemical environments and what could be expected for future perspectives.

Size-selective effects on fullerene adsorption by nanoporous molecular networks

A new hierarchical self-assembling molecular template, which can size-selectively immobilize fullerene molecules, is reported. The molecular template is fabricated from 1,3,5-tris(10-carboxydecyloxy)benzene (TCDB) and triangle-shaped macrocycles. It is observed that the two-dimensional hydrogen-bonded achiral TCDB network affected by the 3NN-Macrocycle becomes a chiral network. Host and guest molecules both form chiral arrangements with hexagonal empty pores. In addition, fullerenes and other molecules such as coronene can be entrapped in the empty pores or on the 3NN-Macrocycle molecules. The adsorption constant (K) is estimated, from which it is concluded that the different filling behaviors of the fullerenes are associated with the different sizes of the guest species. This method provides a facile approach to molecularly designed surfaces and the study of fullerene molecular arrays on the single-molecule level.

In situ STM imaging of the structures of pentacene molecules adsorbed on Au(111)

In situ scanning tunneling microscope (STM) was used to examine the spatial structures of pentacene molecules adsorbed onto a Au(111) single-crystal electrode from a benzene dosing solution containing 16-400 microM pentacene. Molecular-resolution STM imaging conducted in 0.1 M HClO(4) revealed highly ordered pentacene structures of ( radical31 x radical31)R8.9 degrees , (3 x 10), ( radical31 x 10), and ( radical7 x 2 radical7)R19.1 degrees adsorbed on the reconstructed Au(111) electrode dosed with different pentacene solutions. These pentacene structures and the reconstructed Au(111) substrate were stable between 0.2 and 0.8 V [vs reversible hydrogen electrode, RHE]. Increasing the potential to E > 0.8 V lifted the reconstructed Au(111) surface and disrupted the ordered pentacene adlattices simultaneously. Ordered pentacene structures could be restored by applying potentials negative enough to reinforce the reconstructed Au(111). At potentials negative of 0.2 V, the adsorption of protons became increasingly important to displace adsorbed pentacene admolecules. Although the reconstructed Au(111) structure was not essential to produce ordered pentacene adlayers, it seemed to help the adsorption of pentacene molecules in a long-range ordered pattern. At room temperature (25 degrees C), approximately 100 pentacene molecules seen in STM images could rotate and align themselves to a neighboring domain in 10 s, suggesting that pentacene admolecules could be mobile on Au(111) under the STM imaging conditions of -150 mV in bias voltage and 1 nA in feedback current.

C60-pentacene network formation by 2-D co-crystallization

We report experiments highlighting the mechanistic role of mobile pentacene precursors in the formation of a network C(60)-pentacene co-crystalline structure on Ag(111). This co-crystalline arrangement was first observed by low temperature scanning tunneling microscopy (STM) by Zhang et al. (Zhang, H. L.; Chen, W.; Huang, H.; Chen, L.; Wee, A. T. S. J. Am. Chem. Soc. 2008, 130, 2720-2721). We now show that this structure forms readily at room temperature from a two-dimensional (2-D) mixture. Pentacene, evaporated onto Ag(111) to coverages of 0.4-1.0 ML, produces a two-dimensional (2-D) gas. Subsequently deposited C(60) molecules combine with the pentacene 2-D gas to generate a network structure, consisting of chains of close-packed C(60) molecules, spaced by individual C(60) linkers and 1 nm x 2.5 nm pores containing individual pentacene molecules. Spontaneous formation of this stoichiometric (C(60))(4)-pentacene network from a range of excess pentacene surface coverage (0.4 to 1.0 ML) indicates a self-limiting assembly process. We refine the structure model for this phase and discuss the generality of this co-crystallization mechanism.

In situ scanning tunneling microscopy on the dynamic process of the replacement of coronene on au (111) by 6-mercapto-1-hexanol

The replacement of coronene monolayer on Au (111) by 6-mercapto-1-hexanol (MHO) was studied by in situ scanning tunneling microscopy (STM) in solutions. It was found that the rate of replacement depends strongly on the concentration of MHO. The replacement finished within a second at a higher concentration of MHO. At a lower concentration, the slow replacement could be followed by in situ STM. The replacement occurred initially near the elbow position of reconstructed Au (111) with the formation of pits in a single or several missing molecules. With the proceeding of replacement, these small pits expanded, and the surrounding coronene molecules were gradually substituted by MHO, which developed into ordered domains within a spatial confined environment. Meanwhile, the reconstruction of Au (111) was lifted. The replacement expanded fast along the reconstruction lines in the domain. For the fast replacement, a ( radical3 x radical3) R30 degrees adlattice was observed, while a c(4 x 2) superlattice was observed for the slow replacement. The close-packed phase of MHO self-assembled monolayers (SAMs) appeared directly instead of a flat-lying phase, which implied that the coronene molecules resist the direct contact of hydrocarbon chain of MHO with Au (111) surface. The replacing rate of the overall process exhibited a signoidal shape with time.

Supramolecular assembly of heterocirculenes in 2D and 3D

The results of a high-resolution ambient STM study of 'sulflower' (octathio[8]circulene) and 'selenosulflower' (sym-tetraselena-tetrathio[8]circulene) molecules, immobilized in a hydrogen-bonded matrix of trimesic acid (TMA) at the solid-liquid interface, are compared with the STM and X-ray structure of separate host and guest 2D and 3D crystals, respectively.

Directing the assembly of charged organic molecules by a hydrophilic-hydrophobic nanostructured monolayer at electrified interfaces

Nanostructured monolayers of water-insoluble amphiphilic 5-alkoxy-isophthalic acids direct the reversible self-assembly of water-soluble positively and negatively charged molecules under electrochemical control. The surface potential is in control of the monolayer composition, structure, and guest dynamics.

Effect of the bridge alkylene chain on adlayer structure and property of functional oligothiophenes studied with scanning tunneling microscopy and spectroscopy

Five dual-quinquethiophene self-assemblies are prepared on a highly oriented pyrolytic graphite (HOPG) surface. The dual-quinquethiophenes are quinquethiophenes (5T)-di to hexamethylene (n, 2-6)-quinquethiophenes (5T), abbreviated as 5T-n-5T (n = 2-6). The effect of the bridge alkylene chains on the structure and property of the five assemblies are investigated by scanning tunneling microscopy (STM). It is found that all 5T-n-5T molecules form ordered adlayers on a HOPG surface with stripe feature. The alkylene bridge part in a molecule appears in a dark contrast in an STM image. Intriguingly, the thiophene backbones of individual molecules in the adlayer always keep an angle with the direction of molecular stripes. With alkylene bridge length increasing, different structures are found in 5T-5-5T and 5T-6-5T assemblies. To understand the effect of bridge chains on single molecular property, scanning tunneling spectroscopy is used to probe the electronic property of the different adlayers. The results will be important in surface engineering by self-assembly and molecular device fabrication with oligothiophenes.