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Eymard C, Manchoju A, Almazloum A, Dostie S, Prévost M, Nemer M, Guindon Y. Synthesis of 4'-Thionucleoside Analogues Bearing a C2' Stereogenic All-Carbon Quaternary Center. Molecules 2024; 29:1647. [PMID: 38611926 PMCID: PMC11013827 DOI: 10.3390/molecules29071647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 04/03/2024] [Accepted: 04/04/2024] [Indexed: 04/14/2024] Open
Abstract
The design of novel 4'-thionucleoside analogues bearing a C2' stereogenic all-carbon quaternary center is described. The synthesis involves a highly diastereoselective Mukaiyama aldol reaction, and a diastereoselective radical-based vinyl group transfer to generate the all-carbon stereogenic C2' center, along with different approaches to control the selectivity of the N-glycosidic bond. Intramolecular SN2-like cyclization of a mixture of acyclic thioaminals provided analogues with a pyrimidine nucleobase. A kinetic bias favoring cyclization of the 1',2'-anti thioaminal furnished the desired β-D-4'-thionucleoside analogue in a 7:1 ratio. DFT calculations suggest that this kinetic resolution originates from additional steric clash in the SN2-like transition state for 1',4'-trans isomers, causing a significant decrease in their reaction rate relative to 1',4'-cis counterparts. N-glycosylation of cyclic glycosyl donors with a purine nucleobase enabled the formation of novel 2-chloroadenine 4'-thionucleoside analogues. These proprietary molecules and other derivatives are currently being evaluated both in vitro and in vivo to establish their biological profiles.
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Affiliation(s)
- Carla Eymard
- Bioorganic Chemistry Laboratory, Institut de Recherches Cliniques de Montréal (IRCM), Montréal, QC H2W 1R7, Canada; (C.E.); (A.M.); (S.D.)
- Department of Chemistry, Université de Montréal, Montréal, QC H3C 3J7, Canada
| | - Amarender Manchoju
- Bioorganic Chemistry Laboratory, Institut de Recherches Cliniques de Montréal (IRCM), Montréal, QC H2W 1R7, Canada; (C.E.); (A.M.); (S.D.)
| | - Abir Almazloum
- Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, ON K1N 6N5, Canada; (A.A.); (M.N.)
| | - Starr Dostie
- Bioorganic Chemistry Laboratory, Institut de Recherches Cliniques de Montréal (IRCM), Montréal, QC H2W 1R7, Canada; (C.E.); (A.M.); (S.D.)
| | - Michel Prévost
- Bioorganic Chemistry Laboratory, Institut de Recherches Cliniques de Montréal (IRCM), Montréal, QC H2W 1R7, Canada; (C.E.); (A.M.); (S.D.)
| | - Mona Nemer
- Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, ON K1N 6N5, Canada; (A.A.); (M.N.)
| | - Yvan Guindon
- Bioorganic Chemistry Laboratory, Institut de Recherches Cliniques de Montréal (IRCM), Montréal, QC H2W 1R7, Canada; (C.E.); (A.M.); (S.D.)
- Department of Chemistry, Université de Montréal, Montréal, QC H3C 3J7, Canada
- Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, ON K1N 6N5, Canada; (A.A.); (M.N.)
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2
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Garg Y, Osborne J, Vasylevskyi S, Velmurugan N, Tanaka F. 1,3-Diamine-Derived Catalysts: Design, Synthesis, and the Use in Enantioselective Mannich Reactions of Ketones. J Org Chem 2023; 88:11096-11101. [PMID: 37460110 PMCID: PMC10407930 DOI: 10.1021/acs.joc.3c01051] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Indexed: 08/05/2023]
Abstract
1,3-Diamine-derived catalysts were designed, synthesized, and used in asymmetric Mannich reactions of ketones. The reactions catalyzed by one of the 1,3-diamine derivatives in the presence of acids afforded the Mannich products with high enantioselectivities under mild conditions. In most cases, bond formation occurred at the less-substituted α-position of the ketone carbonyl group. Our results indicate that the primary and the tertiary amines of the 1,3-diamine derivative cooperatively act for the catalysis.
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Affiliation(s)
- Yuvraj Garg
- Chemistry
and Chemical Bioengineering Unit, Okinawa
Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna, Okinawa 904-0495, Japan
| | - James Osborne
- Chemistry
and Chemical Bioengineering Unit, Okinawa
Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna, Okinawa 904-0495, Japan
| | - Serhii Vasylevskyi
- Research
Support Division, Okinawa Institute of Science
and Technology Graduate University, 1919-1 Tancha, Onna, Okinawa 904-0495, Japan
| | - Nivedha Velmurugan
- Chemistry
and Chemical Bioengineering Unit, Okinawa
Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna, Okinawa 904-0495, Japan
| | - Fujie Tanaka
- Chemistry
and Chemical Bioengineering Unit, Okinawa
Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna, Okinawa 904-0495, Japan
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3
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Kaghad A, Panagopoulos D, Caballero-García G, Zhai H, Britton R. An α-chloroaldehyde-based formal synthesis of eribulin. Nat Commun 2023; 14:1904. [PMID: 37019928 PMCID: PMC10076431 DOI: 10.1038/s41467-023-37346-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Accepted: 03/10/2023] [Indexed: 04/07/2023] Open
Abstract
Eribulin (Halaven) is the most structurally complex non-peptidic drug made by total synthesis and has challenged preconceptions of synthetic feasibility in drug discovery and development. However, despite decades of research, the synthesis and manufacture of eribulin remains a daunting task. Here, we report syntheses of the most complex fragment of eribulin (C14-C35) used in two distinct industrial routes to this important anticancer drug. Our convergent strategy relies on a doubly diastereoselective Corey-Chaykovsky reaction to affect the union of two tetrahydrofuran-containing subunits. Notably, this process relies exclusively on enantiomerically enriched α-chloroaldehydes as building blocks for constructing the three densely functionalized oxygen heterocycles found in the C14-C35 fragment and all associated stereocenters. Overall, eribulin can now be produced in a total of 52 steps, which is a significant reduction from that reported in both academic and industrial syntheses.
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Affiliation(s)
- Anissa Kaghad
- Department of Chemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada
| | - Dimitrios Panagopoulos
- Department of Chemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada
| | | | - Huimin Zhai
- Department of Chemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada
| | - Robert Britton
- Department of Chemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada.
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4
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Abstract
Covering: January to December 2021This review covers the literature published in 2021 for marine natural products (MNPs), with 736 citations (724 for the period January to December 2021) referring to compounds isolated from marine microorganisms and phytoplankton, green, brown and red algae, sponges, cnidarians, bryozoans, molluscs, tunicates, echinoderms, mangroves and other intertidal plants and microorganisms. The emphasis is on new compounds (1425 in 416 papers for 2021), together with the relevant biological activities, source organisms and country of origin. Pertinent reviews, biosynthetic studies, first syntheses, and syntheses that led to the revision of structures or stereochemistries, have been included. An analysis of the number of authors, their affiliations, domestic and international collection locations, focus of MNP studies, citation metrics and journal choices is discussed.
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Affiliation(s)
- Anthony R Carroll
- School of Environment and Science, Griffith University, Gold Coast, Australia. .,Griffith Institute for Drug Discovery, Griffith University, Brisbane, Australia
| | - Brent R Copp
- School of Chemical Sciences, University of Auckland, Auckland, New Zealand
| | - Rohan A Davis
- Griffith Institute for Drug Discovery, Griffith University, Brisbane, Australia.,School of Enivironment and Science, Griffith University, Brisbane, Australia
| | - Robert A Keyzers
- Centre for Biodiscovery, and School of Chemical and Physical Sciences, Victoria University of Wellington, Wellington, New Zealand
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5
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Yu Q, Zhou Y, Gao X, Pan S, Lin F, Li W. Gram-Scale Synthesis of the C14–C23 Fragment of Eribulin. Org Process Res Dev 2023. [DOI: 10.1021/acs.oprd.2c00370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
Affiliation(s)
- Qiuhan Yu
- Department of Medicinal Chemistry School of Pharmacy, China Pharmaceutical University, 639 Longmian Avenue, Nanjing, Jiangsu 211198, P. R. of China
| | - Yueer Zhou
- Department of Medicinal Chemistry School of Pharmacy, China Pharmaceutical University, 639 Longmian Avenue, Nanjing, Jiangsu 211198, P. R. of China
| | - Xinai Gao
- Department of Medicinal Chemistry School of Pharmacy, China Pharmaceutical University, 639 Longmian Avenue, Nanjing, Jiangsu 211198, P. R. of China
| | - Shuheng Pan
- Department of Medicinal Chemistry School of Pharmacy, China Pharmaceutical University, 639 Longmian Avenue, Nanjing, Jiangsu 211198, P. R. of China
| | - Feng Lin
- WuXi AppTec, 288 Fute Zhong Road, Waigaoqiao Free Trade Zone, Shanghai 200131, P. R. of China
| | - Wei Li
- Department of Medicinal Chemistry School of Pharmacy, China Pharmaceutical University, 639 Longmian Avenue, Nanjing, Jiangsu 211198, P. R. of China
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Zhang QX, Gu Q, You SL. Palladium(0)-Catalyzed Intermolecular Asymmetric Allylic Dearomatization of Substituted β-Naphthols with Morita-Baylis-Hillman (MBH) Adducts. Org Lett 2022; 24:8031-8035. [PMID: 36264244 DOI: 10.1021/acs.orglett.2c03262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Pd-catalyzed intermolecular asymmetric allylic dearomatization of substituted β-naphthol derivatives with Boc-protected Morita-Baylis-Hillman (MBH) adducts was developed. The reaction occurs smoothly in 1,4-dioxane at room temperature in the presence of [Pd(C3H5)Cl]2 (2.5 mol %), (S, Sp)-PHOX ligand (5.5 mol %), and Li2CO3 (1.0 equiv). A series of dearomatized products were afforded in moderate to excellent yields and enantioselectivity (up to 99% yield, 97% ee). Furthermore, the compatibility with gram-scale reaction and mild conditions make the current method synthetically useful.
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Affiliation(s)
- Qing-Xia Zhang
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Lingling Lu, Shanghai, 200032, China
| | - Qing Gu
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Lingling Lu, Shanghai, 200032, China
| | - Shu-Li You
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Lingling Lu, Shanghai, 200032, China
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7
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Kim UB, Samala S, Kim N, Bogonda G, Lago‐Santomé H, Jeong Y, Kim J, Jung J, Jeon S, Lee SJ, Shin H. Scalable synthesis of the
C14–C23
fragment of Eribulin and Halichondrin B. B KOREAN CHEM SOC 2022. [DOI: 10.1002/bkcs.12624] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- U. Bin Kim
- R&D Center Yonsung Fine Chemicals Co., Ltd Suwon‐si Republic of Korea
| | - Srinivas Samala
- R&D Center Yonsung Fine Chemicals Co., Ltd Suwon‐si Republic of Korea
| | - Namhyeon Kim
- R&D Center Yonsung Fine Chemicals Co., Ltd Suwon‐si Republic of Korea
| | - Ganganna Bogonda
- R&D Center Yonsung Fine Chemicals Co., Ltd Suwon‐si Republic of Korea
| | - Hugo Lago‐Santomé
- R&D Center Yonsung Fine Chemicals Co., Ltd Suwon‐si Republic of Korea
| | - Youngdo Jeong
- R&D Center Yonsung Fine Chemicals Co., Ltd Suwon‐si Republic of Korea
| | - Jin Kim
- R&D Center Yonsung Fine Chemicals Co., Ltd Suwon‐si Republic of Korea
| | - Jaehun Jung
- R&D Center Yonsung Fine Chemicals Co., Ltd Suwon‐si Republic of Korea
| | - Sung‐Hyun Jeon
- R&D Center Yonsung Fine Chemicals Co., Ltd Suwon‐si Republic of Korea
| | - Seung Jong Lee
- R&D Center Yonsung Fine Chemicals Co., Ltd Suwon‐si Republic of Korea
| | - Hyunik Shin
- R&D Center Yonsung Fine Chemicals Co., Ltd Suwon‐si Republic of Korea
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8
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A unified strategy for the total syntheses of eribulin and a macrolactam analogue of halichondrin B. Proc Natl Acad Sci U S A 2022; 119:e2208938119. [PMID: 35930662 PMCID: PMC9371655 DOI: 10.1073/pnas.2208938119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
A unified synthetic route for the total syntheses of eribulin and a macrolactam analog of halichondrin B is described. The key to the success of the current synthetic approach includes the employment of our reverse approach for the construction of cyclic ether structural motifs and a modified intramolecular cyclization reaction between alkyl iodide and aldehyde functionalities to establish the all-carbon macrocyclic framework of eribulin. These syntheses, together with our previous work on the total syntheses of halichondrin B and norhalichondrin B, demonstrate and validate the powerful reverse approach in the construction of cyclic ether structural motifs. On the other hand, the unified synthetic strategy for the synthesis of the related macrolactam analog provides inspiration and opportunities in the halichondrin field and related polycyclic ether areas.
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9
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Shennan BDA, Berheci D, Crompton JL, Davidson TA, Field JL, Williams BA, Dixon DJ. Branching out: redox strategies towards the synthesis of acyclic α-tertiary ethers. Chem Soc Rev 2022; 51:5878-5929. [PMID: 35770619 DOI: 10.1039/d1cs00669j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Acyclic α-tertiary ethers represent a highly prevalent functionality, common to high-value bioactive molecules, such as pharmaceuticals and natural products, and feature as crucial synthetic handles in their construction. As such their synthesis has become an ever-more important goal in synthetic chemistry as the drawbacks of traditional strong base- and acid-mediated etherifications have become more limiting. In recent years, the generation of highly reactive intermediates via redox approaches has facilitated the synthesis of highly sterically-encumbered ethers and accordingly these strategies have been widely applied in α-tertiary ether synthesis. This review summarises and appraises the state-of-the-art in the application of redox strategies enabling acyclic α-tertiary ether synthesis.
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Affiliation(s)
- Benjamin D A Shennan
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK.
| | - Diana Berheci
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK.
| | - Jessica L Crompton
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK.
| | - Timothy A Davidson
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK.
| | - Joshua L Field
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK.
| | - Benedict A Williams
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK.
| | - Darren J Dixon
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK.
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10
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Clarke JJ, Basemann K, Romano N, Lee SJ, Gagné MR. Borane- and Silylium-Catalyzed Difunctionalization of Carbohydrates: 3,6-Anhydrosugar Enabled 1,6-Site Selectivity. Org Lett 2022; 24:4135-4139. [PMID: 35653692 DOI: 10.1021/acs.orglett.2c01243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A novel diastereoselective, Lewis acid catalyzed 1,6-difunctionalization of galactose and mannose derivatives has been developed in one pot, via sequential nucleophile additions. Our studies point to the formation of a 3,6-anhydrosugar intermediate as key to the 1,6-site-selectivity. Starting material-specific reactivity occurs when competitive ring-opening C-O cleavage is possible, owed to basicity and stereoelectronic stabilization differences. Lastly, Mayr nucleophilicity parameter values helped predict which reaction conditions would be most suitable for specific nucleophiles.
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Affiliation(s)
- Joshua J Clarke
- Caudill Laboratories, Department of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290, United States
| | - Kevin Basemann
- Caudill Laboratories, Department of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290, United States
| | - Neyen Romano
- Caudill Laboratories, Department of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290, United States
| | - Stephen J Lee
- U.S. Army Research Office, P.O. Box 12211, Research Triangle Park, North Carolina 27709, United States
| | - Michel R Gagné
- Caudill Laboratories, Department of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290, United States
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11
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Nicolaou KC, Pan S, Shelke Y, Ye Q, Das D, Rigol S. A Highly Convergent Total Synthesis of Norhalichondrin B. J Am Chem Soc 2021; 143:20970-20979. [PMID: 34851106 DOI: 10.1021/jacs.1c10539] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
A new synthetic strategy for the total synthesis of norhalichondrin B featuring a highly convergent approach and our recently disclosed reverse approach for the synthesis of cyclic ether structural motifs is disclosed. Resulting in the shortest route to norhalichondrin B disclosed thus far, the reported total synthesis was achieved through the synthesis of two almost equally complex fragments whose coupling and short elaboration sequence featured an essential epimerization of the C16 stereocenter occurring concurrently with a simple acid-induced deprotection, a tactic based on a prior study along the synthetic route. This unprecedented strategy within the halichondrin family of natural products could find practical application to the synthesis of other more or less complex natural or designed halichondrin analogues.
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Affiliation(s)
- K C Nicolaou
- Department of Chemistry, BioScience Research Collaborative, Rice University, 6100 Main Street, Houston, Texas 77005, United States
| | - Saiyong Pan
- Department of Chemistry, BioScience Research Collaborative, Rice University, 6100 Main Street, Houston, Texas 77005, United States
| | - Yogesh Shelke
- Department of Chemistry, BioScience Research Collaborative, Rice University, 6100 Main Street, Houston, Texas 77005, United States
| | - Qiuji Ye
- Department of Chemistry, BioScience Research Collaborative, Rice University, 6100 Main Street, Houston, Texas 77005, United States
| | - Dipendu Das
- Department of Chemistry, BioScience Research Collaborative, Rice University, 6100 Main Street, Houston, Texas 77005, United States
| | - Stephan Rigol
- Department of Chemistry, BioScience Research Collaborative, Rice University, 6100 Main Street, Houston, Texas 77005, United States
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