1
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Jones CL, Quinn A, Wang XA, Smith JK, Casavant JM, Berritt S, Knauber T, Martinez CA, Livada J, France SP, Richardson P, Howard RM, Yayla HG. Photoenzymatically-induced asymmetric hydroarylation of alkenes with (hetero)aryl halides. Chem Commun (Camb) 2025; 61:8248-8251. [PMID: 40338155 DOI: 10.1039/d5cc00617a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/09/2025]
Abstract
A set of stereocomplementary ene-reductase enzymes are described which, when induced by light and aided by an exogenous photocatalyst, catalyze the coupling of (hetero)aryl halides and alkenes in an asymmetric intermolecular hydroarylation process. Thus, carbon scaffolds containing C(sp2)-C(sp3) bonds are synthesized enzymatically from simple precursors in excellent enantiomeric excess. Furthermore, an intramolecular mode is presented with improved yield.
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Affiliation(s)
- Corey L Jones
- Pfizer Research & Development, Groton, CT 06340, USA.
| | - Alandra Quinn
- Pfizer Research & Development, Groton, CT 06340, USA.
| | | | - Jason K Smith
- Pfizer Research & Development, Groton, CT 06340, USA.
| | | | - Simon Berritt
- Pfizer Research & Development, Groton, CT 06340, USA.
| | | | | | - Jovan Livada
- Pfizer Research & Development, Groton, CT 06340, USA.
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2
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Chen J, Wu W, Peng Y, Fang Z, Hu Y, Guo K. Ene-Reductases-Catalyzed Non-Natural Reactions. Chemistry 2025; 31:e202500539. [PMID: 40105339 DOI: 10.1002/chem.202500539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2025] [Revised: 03/18/2025] [Accepted: 03/19/2025] [Indexed: 03/20/2025]
Abstract
Flavin-dependent ene-reductases (EREDs), members of the Old Yellow Enzyme (OYE) superfamily, are highly efficient biocatalysts primarily known for catalyzing the asymmetric reduction of activated alkenes. Beyond this native function, the chemical versatility of the flavin cofactor and the sophisticated architecture of their protein structures enable EREDs to exhibit catalytic multifunctionality. The catalytic promiscuity not only highlights the adaptability of these enzymes but also expands their potential to broaden the scope of enzyme-catalyzed reactions in organic synthesis. Given the inherent challenges associated with discovering novel enzyme activities, such catalytic promiscuity of EREDs offers a promising pathway for expanding their applications. This mini-review provides a comprehensive overview of the catalytic multifunctionality of flavin-dependent EREDs, with a particular focus on their "non-natural" functionalities in organic synthesis. This review is primarily divided into two main sections: hydride-dependent reactions and hydride-independent reactions. By highlighting these unconventional biocatalytic pathways, we aim to inspire further exploration into the untapped potential of EREDs and their role in advancing synthetic chemistry.
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Affiliation(s)
- Jie Chen
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu, 211816, P. R. China
| | - Wenjing Wu
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu, 211816, P. R. China
| | - Yongzhen Peng
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu, 211816, P. R. China
| | - Zheng Fang
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu, 211816, P. R. China
| | - Yujing Hu
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu, 211816, P. R. China
| | - Kai Guo
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu, 211816, P. R. China
- State Key Laboratory of Materials-Oriented Chemical Engineering Institution, Nanjing Tech University, Nanjing, Jiangsu, 210009, P. R. China
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3
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Kato S, Fujisawa S, Adachi Y, Bandai M, Mori Y, Mori S, Shirai T, Hayashi T. NHC-Mediated Radical Acylation Catalyzed by Thiamine- and Flavin-Dependent Enzymes. J Am Chem Soc 2025; 147:14837-14844. [PMID: 40232253 PMCID: PMC12046553 DOI: 10.1021/jacs.5c04484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2025] [Revised: 04/07/2025] [Accepted: 04/08/2025] [Indexed: 04/16/2025]
Abstract
Cross-coupling reactions between short-lifetime radicals are challenging reactions in organic chemistry. Here, we report the development of an N-heterocyclic carbene (NHC)-mediated radical coupling reaction based on the catalytic machinery of thiamine- and flavin-dependent enzymes. Through a series of enzyme screenings, we found that acetolactate synthase from Thermobispora bispora (TbALS) and its engineered variants exhibit promising catalytic activity toward abiotic radical acylation reactions of α-bromo carbonyl compounds. Notably, the TbALS variant has higher catalytic activity for small nonaromatic substrates despite forming less stable radical intermediates. Furthermore, the catalytic system of TbALS can be applied to photocatalytic reactions utilizing the photoredox properties of FAD. Nonbenzylic alkyl radicals generated from N-acyloxyphthalimides are efficiently converted into the corresponding dialkyl ketones under irradiation of a blue LED. These findings highlight the utility of thiamine- and flavin-dependent enzymes for achieving selective cross-coupling reactions of short-lifetime radicals.
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Affiliation(s)
- Shunsuke Kato
- Department
of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan
| | - Shuto Fujisawa
- Department
of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan
| | - Yuto Adachi
- Department
of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan
| | - Mitsuhiro Bandai
- Institute
of Quantum Beam Science, Graduate School of Science and Engineering, Ibaraki University, Mito 310-8512, Japan
| | - Yutaro Mori
- Department
of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, Japan
| | - Seiji Mori
- Institute
of Quantum Beam Science, Graduate School of Science and Engineering, Ibaraki University, Mito 310-8512, Japan
- Research
and Education Center for Atomic Sciences, Ibaraki University, Tokai, Ibaraki 319-1106, Japan
| | - Tomokazu Shirai
- RIKEN
Center for Sustainable Resource Science, Yokohama 230-0045, Japan
| | - Takashi Hayashi
- Department
of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan
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4
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Pereira MVP, Geunes EP, Shao H, Zhang Y, Cheng J, Magpantay SV, Mercado BQ, Mayer JM, Houk KN, Knowles RR, Miller SJ. Enantioselective Hydrodifluoroalkylation of Alkenes with Conformationally Tuned Peptidyl Hydrogen Atom Transfer Catalysts. J Am Chem Soc 2025; 147:11412-11424. [PMID: 40111502 PMCID: PMC11983094 DOI: 10.1021/jacs.5c01166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2025]
Abstract
We report the enantioselective hydrodifluoroalkylation of alkenes proceeding via an asymmetric hydrogen atom transfer (HAT) event catalyzed by thiol-containing tetrapeptides. Photocatalytic generation of a difluoroacetyl radical followed by carbon-carbon bond formation results in a prochiral carbon-centered radical that engages with the chiral catalyst. A trialkylamine reductant is proposed to turn over the catalyst in this net-reductive transformation. Notably, incorporating an (S)-β-methyl-substituted cysteine as the N-terminal residue improved selectivity relative to that of the native N-terminal cysteine (Cys) residue, and X-ray crystallographic analysis supports the conformational underpinning of this effect. A range of enantioenriched γ-substituted amides were synthesized in up to a 96:4 enantiomeric ratio, demonstrating the broad functional group tolerance of this method. Models accounting for asymmetric induction are proposed with supporting DFT calculations.
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Affiliation(s)
| | - Eric P. Geunes
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Huiling Shao
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Yiran Zhang
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Jinkai Cheng
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Samantha V. Magpantay
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Brandon Q. Mercado
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - James M. Mayer
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Kendall N. Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Robert R. Knowles
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Scott J. Miller
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
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5
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Cheng L, Bo Z, Krohn-Hansen B, Yang Y. Directed Evolution and Unusual Protonation Mechanism of Pyridoxal Radical C-C Coupling Enzymes for the Enantiodivergent Photobiocatalytic Synthesis of Noncanonical Amino Acids. J Am Chem Soc 2025; 147:4602-4612. [PMID: 39849356 DOI: 10.1021/jacs.4c16716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2025]
Abstract
Visible light-driven pyridoxal radical biocatalysis has emerged as a new strategy for the stereoselective synthesis of valuable noncanonical amino acids in a protecting-group-free fashion. In our previously developed dehydroxylative C-C coupling using engineered PLP-dependent tryptophan synthases, an enzyme-controlled unusual α-stereochemistry reversal and pH-controlled enantiopreference were observed. Herein, through high-throughput photobiocatalysis, we evolved a set of stereochemically complementary PLP radical enzymes, allowing the synthesis of both l- and d-amino acids with enhanced enantiocontrol across a broad pH window. These newly engineered l- and d-amino acid synthases permitted the use of a broad range of organoboron substrates, including boronates, trifluoroborates, and boronic acids, with excellent efficiency. Mechanistic studies unveiled unexpected PLP racemase activity with our earlier PLP enzyme variants. This promiscuous racemase activity was abolished in our evolved amino acid synthases, shedding light on the origin of enhanced enantiocontrol. Further mechanistic investigations suggest a switch of proton donor to account for the stereoinvertive formation of d-amino acids, highlighting an unusual stereoinversion mechanism that is rare in conventional two-electron PLP enzymology.
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Affiliation(s)
- Lei Cheng
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States
| | - Zhiyu Bo
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States
| | - Benjamin Krohn-Hansen
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States
| | - Yang Yang
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States
- Biomolecular Science and Engineering Program, University of California Santa Barbara, Santa Barbara, California 93106, United States
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6
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Duan X, Cui D, Wang M, Jin C, Cai X, Wang Z, Xu J. Ground-state flavin-dependent enzymes catalyzed enantioselective radical trifluoromethylation. Nat Commun 2025; 16:1225. [PMID: 39890795 PMCID: PMC11785956 DOI: 10.1038/s41467-025-56437-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2024] [Accepted: 01/20/2025] [Indexed: 02/03/2025] Open
Abstract
The introduction of fluoroalkyl groups into pharmaceutical compounds has the potential to enhance their therapeutic properties. Nevertheless, the synthesis of enantiomerically pure C(sp³)-CF₃ compounds poses a significant challenge. Biocatalysis offers precise stereochemical control, however, the scarcity of fluorine-containing natural products makes it difficult to find enzymes capable of incorporating fluoroalkyl groups. Herein, we develop a ground-state flavin-dependent enzyme-catalyzed strategy for the radical-mediated enantioselective trifluoromethylation. Two engineered flavin-dependent enzymes are successfully developed to catalyze stereoselective hydrotrifluoromethylation and trifluoromethyl-alkyl cross-electrophile coupling reactions using trifluoromethyl thianthrenium triflate as a radical donor. Experimental investigations and computational simulations demonstrate that the reaction is initiated through single-electron transfer from the ground state flavin hydroquinone (FMNhq) and quenched through hydrogen atom transfer by flavin semiquinone (FMNsq). This strategy provides an opportunity to bridge the gap between biocatalysis and organic fluorides but also introduces an alternative approach to address challenging stereoselective fluoroalkylation reactions in organic synthesis.
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Affiliation(s)
- Xinyu Duan
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, China
| | - Dong Cui
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, China
| | - Mengdi Wang
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, China
| | - Chenlu Jin
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, China
| | - Xiaochen Cai
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, China
| | - Zhiguo Wang
- Institute of Ageing Research, School of Basic Medical Sciences, Hangzhou Normal University, Hangzhou, China.
| | - Jian Xu
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, China.
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7
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Chen KY, Ming H, Wang HX, Wang HQ, Xiang Z. Genetic Incorporation of a Thioxanthone-Containing Amino Acid for the Design of Artificial Photoenzymes. Angew Chem Int Ed Engl 2025; 64:e202419022. [PMID: 39676059 DOI: 10.1002/anie.202419022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2024] [Revised: 12/11/2024] [Accepted: 12/12/2024] [Indexed: 12/17/2024]
Abstract
Genetically encodable photosensitizers allow the design of artificial photoenzymes to expand the scope of abiological reactions. Herein, we report the genetic incorporation of a thioxanthone-containing amino acid into a protein scaffold via an engineered pyrrolysyl-tRNA/pyrrolysyl-tRNA synthetase pair. The designer enzyme was engineered to catalyze a dearomative [2+2] cycloaddition reaction in high yields (up to>99 % yield) with excellent enantioselectivity (up to 98 : 2 e.r.). This work provides a robust and facile method for photoenzyme design and lays the foundation for the development of further photoenzymatic reactions.
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Affiliation(s)
- Kai-Yue Chen
- State Key Laboratory of Chemical Oncogenomics, Shenzhen Key Laboratory of Chemical Genomics, AI for Science (AI4S) Preferred Program, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, University Town of Shenzhen, Nanshan District, 518055 Shenzhen, P. R. China
| | - Hui Ming
- State Key Laboratory of Chemical Oncogenomics, Shenzhen Key Laboratory of Chemical Genomics, AI for Science (AI4S) Preferred Program, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, University Town of Shenzhen, Nanshan District, 518055 Shenzhen, P. R. China
| | - He-Xiang Wang
- State Key Laboratory of Chemical Oncogenomics, Shenzhen Key Laboratory of Chemical Genomics, AI for Science (AI4S) Preferred Program, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, University Town of Shenzhen, Nanshan District, 518055 Shenzhen, P. R. China
| | - Hua-Qi Wang
- State Key Laboratory of Chemical Oncogenomics, Shenzhen Key Laboratory of Chemical Genomics, AI for Science (AI4S) Preferred Program, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, University Town of Shenzhen, Nanshan District, 518055 Shenzhen, P. R. China
| | - Zheng Xiang
- State Key Laboratory of Chemical Oncogenomics, Shenzhen Key Laboratory of Chemical Genomics, AI for Science (AI4S) Preferred Program, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, University Town of Shenzhen, Nanshan District, 518055 Shenzhen, P. R. China
- Institute of Chemical Biology, Shenzhen Bay Laboratory, Gaoke Innovation Center, Guangqiao Road, Guangming District, 518132 Shenzhen, P. R. China
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8
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Londi G, Salvadori G, Mazzeo P, Cupellini L, Mennucci B. Protein-Driven Electron-Transfer Process in a Fatty Acid Photodecarboxylase. JACS AU 2025; 5:158-168. [PMID: 39886566 PMCID: PMC11775712 DOI: 10.1021/jacsau.4c00853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2024] [Revised: 11/29/2024] [Accepted: 12/04/2024] [Indexed: 02/01/2025]
Abstract
Naturally occurring photoenzymes are rare in nature, but among them, fatty acid photodecarboxylases derived from Chlorella variabilis (CvFAPs) have emerged as promising photobiocatalysts capable of performing the redox-neutral, light-induced decarboxylation of free fatty acids (FAs) into C1-shortened n-alka(e)nes. Using a hybrid QM/MM approach combined with a polarizable embedding scheme, we identify the structural changes of the active site and determine the energetic landscape of the forward electron transfer (fET) from the FA substrate to the excited flavin adenine dinucleotide. We obtain a charge-transfer diradical structure where a water molecule rearranges spontaneously to form a H-bond interaction with the excited flavin, while the FA's carboxylate group twists and migrates away from it. Together, these structural modifications provide the driving force necessary for the fET to proceed in a downhill direction. Moreover, by examining the R451K mutant where the FA substrate is farther from the flavin core, we show that the marked reduction of the electronic coupling is counterbalanced by an increased driving force, resulting in a fET lifetime similar to the WT, thereby suggesting a resilience of the process to this mutation. Finally, through QM/MM molecular dynamic simulations, we reveal that, following fET, the decarboxylation of the FA radical occurs within tens of picoseconds, overcoming an energy barrier of ∼0.1 eV. Overall, by providing an atomistic characterization of the photoactivation of CvFAP, this work can be used for future protein engineering.
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Affiliation(s)
- Giacomo Londi
- Department
of Chemistry and Industrial Chemistry, University
of Pisa, 56124 Pisa, Italy
| | - Giacomo Salvadori
- Institute
for Computational Biomedicine (INM-9), Forschungszentrum
Jülich, 52428 Jülich, Germany
| | - Patrizia Mazzeo
- Department
of Chemistry and Industrial Chemistry, University
of Pisa, 56124 Pisa, Italy
| | - Lorenzo Cupellini
- Department
of Chemistry and Industrial Chemistry, University
of Pisa, 56124 Pisa, Italy
| | - Benedetta Mennucci
- Department
of Chemistry and Industrial Chemistry, University
of Pisa, 56124 Pisa, Italy
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9
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Xu W, Mou K, Lu Z, Kang X, Guo Y, Ding B, Chen Z, Wang Z, Wu Q. Catalytic Promiscuity of Fatty Acid Photodecarboxylase Enables Stereoselective Synthesis of Chiral α-Tetralones. Angew Chem Int Ed Engl 2024; 63:e202412862. [PMID: 39140466 DOI: 10.1002/anie.202412862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Revised: 08/13/2024] [Accepted: 08/14/2024] [Indexed: 08/15/2024]
Abstract
In the field of biocatalysis, discovering novel reactivity from known enzymes has been a longstanding challenge. Fatty acid photo-decarboxylase from Chlorella variabilis (CvFAP) has drawn considerable attention as a promising photoenzyme with potential green chemistry applications; however, its non-natural reactivity has rarely been exploited to date. Herein we report a non-natural reductive dehalogenation (deacetoxylation) reactivity of CvFAP inspired by its natural oxidative decarboxylation process, enabling the stereoselective synthesis of a series of chiral α-substituted tetralones with high yields (up to 99 %) and e.r. values (up to 99 : 1). Mechanistic studies demonstrated that the native photoenzyme catalyzed the reductive dehalogenation via a novel mechanism involving oxidized state (FADox)/semiquinone state (FADsq) redox pair and an electron transfer (ET)/proton transfer (PT) process of radical termination, distinct from the previous reports. To our knowledge, this study represents a new example of CvFAP promiscuity, and thus expands the reactivity repertoire of CvFAP and highlights the versatility of CvFAP in asymmetric synthesis.
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Affiliation(s)
- Weihua Xu
- Center of Chemistry for Frontier Technologies, Department of Chemistry, Zijingang Campus, Zhejiang University, Hangzhou, 310058, China
| | - Kaihao Mou
- Center of Chemistry for Frontier Technologies, Department of Chemistry, Zijingang Campus, Zhejiang University, Hangzhou, 310058, China
| | - Zhenyu Lu
- Center of Chemistry for Frontier Technologies, Department of Chemistry, Zijingang Campus, Zhejiang University, Hangzhou, 310058, China
| | - Xiuwen Kang
- Center for Ultrafast Science and Technology, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Yue Guo
- Center of Chemistry for Frontier Technologies, Department of Chemistry, Zijingang Campus, Zhejiang University, Hangzhou, 310058, China
| | - Bei Ding
- Center for Ultrafast Science and Technology, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Zhirong Chen
- Center of Chemistry for Frontier Technologies, Department of Chemistry, Zijingang Campus, Zhejiang University, Hangzhou, 310058, China
| | - Zhiguo Wang
- Institute of Aging Research, School of Basic Medical Sciences, Hangzhou Normal University, Hangzhou, 311121, China
| | - Qi Wu
- Center of Chemistry for Frontier Technologies, Department of Chemistry, Zijingang Campus, Zhejiang University, Hangzhou, 310058, China
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10
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Li L, Zhang SQ, Cui X, Zhao G, Tang Z, Li GX. Catalytic Asymmetric Hydrogen Atom Transfer Based on a Chiral Hydrogen Atom Donor Generated from TBADT and Chiral BINOL. Org Lett 2024; 26:8371-8376. [PMID: 39316028 DOI: 10.1021/acs.orglett.4c03175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/25/2024]
Abstract
Enantioselective radical reactions mediated by TBADT have seldom been seen due to the inherent challenges. Herein, we disclose a new chiral hydrogen atom transfer (HAT) reagent that was generated easily from 8H-BINOL, potassium carbonate, and TBADT under irradiation. The new complex 8H-BINOL/DTs could be used as a chiral H donor. A series of azaarenes could be converted into the corresponding chiral compounds via radical addition followed by enantioselective HAT.
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Affiliation(s)
- Ling Li
- Chengdu Institution of Biology, Chinese Academy of Science, Chengdu, Sichuan 610041, China
- College of Chemical Engineering, Sichuan University, Chengdu, Sichuan 610065, China
| | - Shi-Qi Zhang
- Chengdu Institution of Biology, Chinese Academy of Science, Chengdu, Sichuan 610041, China
| | - Xin Cui
- Chengdu Institution of Biology, Chinese Academy of Science, Chengdu, Sichuan 610041, China
| | - Gang Zhao
- College of Chemical Engineering, Sichuan University, Chengdu, Sichuan 610065, China
| | - Zhuo Tang
- Chengdu Institution of Biology, Chinese Academy of Science, Chengdu, Sichuan 610041, China
| | - Guang-Xun Li
- Chengdu Institution of Biology, Chinese Academy of Science, Chengdu, Sichuan 610041, China
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11
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Nishikata T. α-Halocarbonyls as a Valuable Functionalized Tertiary Alkyl Source. ChemistryOpen 2024; 13:e202400108. [PMID: 38989712 PMCID: PMC12056945 DOI: 10.1002/open.202400108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 05/21/2024] [Indexed: 07/12/2024] Open
Abstract
This review introduces the synthetic organic chemical value of α-bromocarbonyl compounds with tertiary carbons. This α-bromocarbonyl compound with a tertiary carbon has been used primarily only as a radical initiator in atom transfer radical polymerization (ATRP) reactions. However, with the recent development of photo-radical reactions (around 2010), research on the use of α-bromocarbonyl compounds as tertiary alkyl radical precursors became popular (around 2012). As more examples were reported, α-bromocarbonyl compounds were studied not only as radicals but also for their applications in organometallic and ionic reactions. That is, α-bromocarbonyl compounds act as nucleophiles as well as electrophiles. The carbonyl group of α-bromocarbonyl compounds is also attractive because it allows the skeleton to be converted after the reaction, and it is being applied to total synthesis. In our survey until 2022, α-bromocarbonyl compounds can be used to perform a full range of reactions necessary for organic synthesis, including multi-component reactions, cross-coupling, substitution, cyclization, rearrangement, stereospecific reactions, asymmetric reactions. α-Bromocarbonyl compounds have created a new trend in tertiary alkylation, which until then had limited reaction patterns in organic synthesis. This review focuses on how α-bromocarbonyl compounds can be used in synthetic organic chemistry.
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Affiliation(s)
- Takashi Nishikata
- Graduate School of Science and EngineeringYamaguchi University2-16-1 TokiwadaiUbeYamaguchi755-8611Japan
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12
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Fan XY, Yu Y, Yao Y, Li WD, Tao FY, Wang N. Applications of Ene-Reductases in the Synthesis of Flavors and Fragrances. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:18305-18320. [PMID: 38966982 PMCID: PMC11342376 DOI: 10.1021/acs.jafc.4c02897] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Revised: 06/26/2024] [Accepted: 06/28/2024] [Indexed: 07/06/2024]
Abstract
Flavors and fragrances (F&F) are interesting organic compounds in chemistry. These compounds are widely used in the food, cosmetic, and medical industries. Enzymatic synthesis exhibits several advantages over natural extraction and chemical preparation, including a high yield, stable quality, mildness, and environmental friendliness. To date, many oxidoreductases and hydrolases have been used to biosynthesize F&F. Ene-reductases (ERs) are a class of biocatalysts that can catalyze the asymmetric reduction of α,β-unsaturated compounds and offer superior specificity and selectivity; therefore, ERs have been increasingly considered an ideal alternative to their chemical counterparts. This review summarizes the research progress on the use of ERs in F&F synthesis over the past 20 years, including the achievements of various scholars, the differences and similarities among the findings, and the discussions of future research trends related to ERs. We hope this review can inspire researchers to promote the development of biotechnology in the F&F industry.
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Affiliation(s)
- Xin-Yue Fan
- Key
Laboratory of Green Chemistry & Technology, Ministry of Education,
College of Chemistry, Sichuan University, Chengdu, Sichuan 610064, People’s
Republic of China
| | - Yuan Yu
- Key
Laboratory of Green Chemistry & Technology, Ministry of Education,
College of Chemistry, Sichuan University, Chengdu, Sichuan 610064, People’s
Republic of China
| | - Yao Yao
- Key
Laboratory of Green Chemistry & Technology, Ministry of Education,
College of Chemistry, Sichuan University, Chengdu, Sichuan 610064, People’s
Republic of China
| | - Wen-Dian Li
- Harmful
Components and Tar Reduction in Cigarette Key Laboratory of Sichuan
Province, China Tobacco Sichuan Industrial
Company, Limited, Chengdu, Sichuan 610066, People’s Republic of China
- Sichuan
Sanlian New Material Company, Limited, Chengdu, Sichuan 610041, People’s Republic
of China
| | - Fei-Yan Tao
- Harmful
Components and Tar Reduction in Cigarette Key Laboratory of Sichuan
Province, China Tobacco Sichuan Industrial
Company, Limited, Chengdu, Sichuan 610066, People’s Republic of China
- Sichuan
Sanlian New Material Company, Limited, Chengdu, Sichuan 610041, People’s Republic
of China
| | - Na Wang
- Key
Laboratory of Green Chemistry & Technology, Ministry of Education,
College of Chemistry, Sichuan University, Chengdu, Sichuan 610064, People’s
Republic of China
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13
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Wang TC, Zhang Z, Rao G, Li J, Shirah J, Britt RD, Zhu Q, Yang Y. Threonine Aldolase-Catalyzed Enantioselective α-Alkylation of Amino Acids through Unconventional Photoinduced Radical Initiation. J Am Chem Soc 2024; 146:22476-22484. [PMID: 38961805 PMCID: PMC11376206 DOI: 10.1021/jacs.4c05949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/05/2024]
Abstract
Visible light-driven pyridoxal radical biocatalysis has emerged as a promising strategy for the stereoselective synthesis of valuable noncanonical amino acids (ncAAs). Previously, the use of well-tailored photoredox catalysts represented the key to enable efficient pyridoxal phosphate (PLP) enzyme-catalyzed radical reactions. Here, we report a PLP-dependent threonine aldolase-catalyzed asymmetric α-C-H alkylation of abundant amino acids using Katritzky pyridinium salts as alkylating agents. The use of engineered threonine aldolases allowed for this redox-neutral radical alkylation to proceed efficiently, giving rise to challenging α-trisubstituted and -tetrasubstituted ncAA products in a protecting-group-free fashion with excellent enantiocontrol. Mechanistically, this enantioselective α-alkylation capitalizes on the unique reactivity of the persistent enzymatic quinonoid intermediate derived from the PLP cofactor and the amino acid substrate to allow for novel radical C-C coupling. Surprisingly, this photobiocatalytic process does not require the use of well-established photoredox catalysts and operates through an unconventional photoinduced radical generation involving a PLP-derived aldimine. The ability to develop photobiocatalytic reactions without relying on classic photocatalysts or photoenzymes opens up new avenues for advancing stereoselective intermolecular radical reactions that are not known in either organic chemistry or enzymology.
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Affiliation(s)
- Tian-Ci Wang
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States
| | - Zheng Zhang
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States
| | - Guodong Rao
- Department of Chemistry, University of California Davis, Davis, California 95616, United States
| | - Jiedong Li
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States
| | - Josephine Shirah
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - R David Britt
- Department of Chemistry, University of California Davis, Davis, California 95616, United States
| | - Qilei Zhu
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Yang Yang
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States
- Biomolecular Science and Engineering Program, University of California Santa Barbara, Santa Barbara, California 93106, United States
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14
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Huang C, Zhang L, Tang T, Wang H, Jiang Y, Ren H, Zhang Y, Fang J, Zhang W, Jia X, You S, Qin B. Application of Directed Evolution and Machine Learning to Enhance the Diastereoselectivity of Ketoreductase for Dihydrotetrabenazine Synthesis. JACS AU 2024; 4:2547-2556. [PMID: 39055154 PMCID: PMC11267543 DOI: 10.1021/jacsau.4c00284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Revised: 06/13/2024] [Accepted: 06/20/2024] [Indexed: 07/27/2024]
Abstract
Biocatalysis is an effective approach for producing chiral drug intermediates that are often difficult to synthesize using traditional chemical methods. A time-efficient strategy is required to accelerate the directed evolution process to achieve the desired enzyme function. In this research, we evaluated machine learning-assisted directed evolution as a potential approach for enzyme engineering, using a moderately diastereoselective ketoreductase library as a model system. Machine learning-assisted directed evolution and traditional directed evolution methods were compared for reducing (±)-tetrabenazine to dihydrotetrabenazine via kinetic resolution facilitated by BsSDR10, a short-chain dehydrogenase/reductase from Bacillus subtilis. Both methods successfully identified variants with significantly improved diastereoselectivity for each isomer of dihydrotetrabenazine. Furthermore, the preparation of (2S,3S,11bS)-dihydrotetrabenazine has been successfully scaled up, with an isolated yield of 40.7% and a diastereoselectivity of 91.3%.
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Affiliation(s)
- Chenming Huang
- Wuya
College of Innovation, Shenyang Pharmaceutical
University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
| | - Li Zhang
- Wuya
College of Innovation, Shenyang Pharmaceutical
University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
| | - Tong Tang
- Wuya
College of Innovation, Shenyang Pharmaceutical
University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
| | - Haijiao Wang
- Wuya
College of Innovation, Shenyang Pharmaceutical
University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
| | - Yingqian Jiang
- Wuya
College of Innovation, Shenyang Pharmaceutical
University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
| | - Hanwen Ren
- Wuya
College of Innovation, Shenyang Pharmaceutical
University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
| | - Yitian Zhang
- Wuya
College of Innovation, Shenyang Pharmaceutical
University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
| | - Jiali Fang
- Wuya
College of Innovation, Shenyang Pharmaceutical
University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
| | - Wenhe Zhang
- School
of Life Sciences and Biopharmaceutical Sciences, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
| | - Xian Jia
- School
of Pharmaceutical Engineering, Shenyang
Pharmaceutical University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
| | - Song You
- School
of Life Sciences and Biopharmaceutical Sciences, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
| | - Bin Qin
- Wuya
College of Innovation, Shenyang Pharmaceutical
University, 103 Wenhua Road, Shenhe, Shenyang 110016, People’s Republic
of China
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15
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Jain S, Ospina F, Hammer SC. A New Age of Biocatalysis Enabled by Generic Activation Modes. JACS AU 2024; 4:2068-2080. [PMID: 38938808 PMCID: PMC11200230 DOI: 10.1021/jacsau.4c00247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Revised: 04/17/2024] [Accepted: 04/19/2024] [Indexed: 06/29/2024]
Abstract
Biocatalysis is currently undergoing a profound transformation. The field moves from relying on nature's chemical logic to a discipline that exploits generic activation modes, allowing for novel biocatalytic reactions and, in many instances, entirely new chemistry. Generic activation modes enable a wide range of reaction types and played a pivotal role in advancing the fields of organo- and photocatalysis. This perspective aims to summarize the principal activation modes harnessed in enzymes to develop new biocatalysts. Although extensively researched in the past, the highlighted activation modes, when applied within enzyme active sites, facilitate chemical transformations that have largely eluded efficient and selective catalysis. This advance is attributed to multiple tunable interactions in the substrate binding pocket that precisely control competing reaction pathways and transition states. We will highlight cases of new synthetic methodologies achieved by engineered enzymes and will provide insights into potential future developments in this rapidly evolving field.
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Affiliation(s)
| | | | - Stephan C. Hammer
- Research Group for Organic Chemistry
and Biocatalysis, Faculty of Chemistry, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Germany
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16
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Tang L, Shen C, Hao S, Dong K. A Type of Chiral C 2-Symmetric Arylthiol Catalyst for Highly Enantioselective Anti-Markovnikov Hydroamination. J Am Chem Soc 2024; 146:16248-16256. [PMID: 38808533 DOI: 10.1021/jacs.4c04596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2024]
Abstract
The development of chiral hydrogen donor catalysts is fundamental in the expansion and innovation of asymmetric organocatalyzed reactions via an enantioselective hydrogen atom transfer (HAT) process. Herein, an unprecedented type of chiral C2-symmetric arylthiol catalysts derived from readily available enantiomeric lactate ester was developed. With these catalysts, an asymmetric anti-Markovnikov alkene hydroamination-cyclization reaction was established, affording a variety of pharmaceutically interesting 3-substituted piperidines with moderate to high enantioselectivity. Results of the designed control experiments and theoretical computation rationalized the origin of stereocontrol and disclosed the spatial effect of the moiety of chiral thiols on the enantioselectivity. We believed the facile synthesis, flexible tunability, and effective enantioselectivity-controlling capability of these catalysts would shed light on the development of versatile chiral HAT catalysts and related asymmetric reactions.
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Affiliation(s)
- Lin Tang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, State Key Laboratory of Petroleum Molecular & Process Engineering, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Chaoren Shen
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, State Key Laboratory of Petroleum Molecular & Process Engineering, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Shaoyu Hao
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, State Key Laboratory of Petroleum Molecular & Process Engineering, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Kaiwu Dong
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, State Key Laboratory of Petroleum Molecular & Process Engineering, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
- Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
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17
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Fu H, Hyster TK. From Ground-State to Excited-State Activation Modes: Flavin-Dependent "Ene"-Reductases Catalyzed Non-natural Radical Reactions. Acc Chem Res 2024; 57:1446-1457. [PMID: 38603772 PMCID: PMC11618812 DOI: 10.1021/acs.accounts.4c00129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/13/2024]
Abstract
Enzymes are desired catalysts for chemical synthesis, because they can be engineered to provide unparalleled levels of efficiency and selectivity. Yet, despite the astonishing array of reactions catalyzed by natural enzymes, many reactivity patterns found in small molecule catalysts have no counterpart in the living world. With a detailed understanding of the mechanisms utilized by small molecule catalysts, we can identify existing enzymes with the potential to catalyze reactions that are currently unknown in nature. Over the past eight years, our group has demonstrated that flavin-dependent "ene"-reductases (EREDs) can catalyze various radical-mediated reactions with unparalleled levels of selectivity, solving long-standing challenges in asymmetric synthesis.This Account presents our development of EREDs as general catalysts for asymmetric radical reactions. While we have developed multiple mechanisms for generating radicals within protein active sites, this account will focus on examples where flavin mononucleotide hydroquinone (FMNhq) serves as an electron transfer radical initiator. While our initial mechanistic hypotheses were rooted in electron-transfer-based radical initiation mechanisms commonly used by synthetic organic chemists, we ultimately uncovered emergent mechanisms of radical initiation that are unique to the protein active site. We will begin by covering intramolecular reactions and discussing how the protein activates the substrate for reduction by altering the redox-potential of alkyl halides and templating the charge transfer complex between the substrate and flavin-cofactor. Protein engineering has been used to modify the fundamental photophysics of these reactions, highlighting the opportunity to tune these systems further by using directed evolution. This section highlights the range of coupling partners and radical termination mechanisms available to intramolecular reactions.The next section will focus on intermolecular reactions and the role of enzyme-templated ternary charge transfer complexes among the cofactor, alkyl halide, and coupling partner in gating electron transfer to ensure that it only occurs when both substrates are bound within the protein active site. We will highlight the synthetic applications available to this activation mode, including olefin hydroalkylation, carbohydroxylation, arene functionalization, and nitronate alkylation. This section also discusses how the protein can favor mechanistic steps that are elusive in solution for the asymmetric reductive coupling of alkyl halides and nitroalkanes. We are aware of several recent EREDs-catalyzed photoenzymatic transformations from other groups. We will discuss results from these papers in the context of understanding the nuances of radical initiation with various substrates.These biocatalytic asymmetric radical reactions often complement the state-of-the-art small-molecule-catalyzed reactions, making EREDs a valuable addition to a chemist's synthetic toolbox. Moreover, the underlying principles studied with these systems are potentially operative with other cofactor-dependent proteins, opening the door to different types of enzyme-catalyzed radical reactions. We anticipate that this Account will serve as a guide and inspire broad interest in repurposing existing enzymes to access new transformations.
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Affiliation(s)
- Haigen Fu
- NHC Key Laboratory of Biotechnology for Microbial Drugs, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing100050, China
| | - Todd K. Hyster
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
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18
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Harrison W, Jiang G, Zhang Z, Li M, Chen H, Zhao H. Photoenzymatic Asymmetric Hydroamination for Chiral Alkyl Amine Synthesis. J Am Chem Soc 2024; 146:10716-10722. [PMID: 38579164 DOI: 10.1021/jacs.4c00620] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2024]
Abstract
Chiral alkyl amines are common structural motifs in pharmaceuticals, natural products, synthetic intermediates, and bioactive molecules. An attractive method to prepare these molecules is the asymmetric radical hydroamination; however, this approach has not been explored with dialkyl amine-derived nitrogen-centered radicals since designing a catalytic system to generate the aminium radical cation, to suppress deleterious side reactions such as α-deprotonation and H atom abstraction, and to facilitate enantioselective hydrogen atom transfer is a formidable task. Herein, we describe the application of photoenzymatic catalysis to generate and harness the aminium radical cation for asymmetric intermolecular hydroamination. In this reaction, the flavin-dependent ene-reductase photocatalytically generates the aminium radical cation from the corresponding hydroxylamine and catalyzes the asymmetric intermolecular hydroamination to furnish the enantioenriched tertiary amine, whereby enantioinduction occurs through enzyme-mediated hydrogen atom transfer. This work highlights the use of photoenzymatic catalysis to generate and control highly reactive radical intermediates for asymmetric synthesis, addressing a long-standing challenge in chemical synthesis.
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Affiliation(s)
- Wesley Harrison
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Guangde Jiang
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Zhengyi Zhang
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Maolin Li
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Haoyu Chen
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Huimin Zhao
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- NSF Molecular Maker Lab Institute, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
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19
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Thorpe T, Marshall JR, Turner NJ. Multifunctional Biocatalysts for Organic Synthesis. J Am Chem Soc 2024; 146:7876-7884. [PMID: 38489244 PMCID: PMC10979396 DOI: 10.1021/jacs.3c09542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 02/13/2024] [Accepted: 02/15/2024] [Indexed: 03/17/2024]
Abstract
Biocatalysis is becoming an indispensable tool in organic synthesis due to high enzymatic catalytic efficiency as well as exquisite chemo- and stereoselectivity. Some biocatalysts display great promiscuity including a broad substrate scope as well as the ability to catalyze more than one type of transformation. These promiscuous activities have been applied individually to efficiently access numerous valuable target molecules. However, systems in which enzymes possessing multiple different catalytic activities are applied in the synthesis are less well developed. Such multifunctional biocatalysts (MFBs) would simplify chemical synthesis by reducing the number of operational steps and enzyme count, as well as simplifying the sequence space that needs to be engineered to develop an efficient biocatalyst. In this Perspective, we highlight recently reported MFBs focusing on their synthetic utility and mechanism. We also offer insight into their origin as well as comment on potential strategies for their discovery and engineering.
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Affiliation(s)
- Thomas
W. Thorpe
- Department
of Chemistry, University of Manchester,
Manchester Institute of Biotechnology, 131 Princess Street, Manchester, United Kingdom, M1
7DN
| | - James R. Marshall
- Department
of Chemistry, University of Manchester,
Manchester Institute of Biotechnology, 131 Princess Street, Manchester, United Kingdom, M1
7DN
| | - Nicholas J. Turner
- Department
of Chemistry, University of Manchester,
Manchester Institute of Biotechnology, 131 Princess Street, Manchester, United Kingdom, M1
7DN
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20
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Petchey MR, Ye Y, Spelling V, Finnigan JD, Gittings S, Johansson MJ, Hayes MA, Hyster TK. Regiodivergent Radical Termination for Intermolecular Biocatalytic C-C Bond Formation. J Am Chem Soc 2024; 146:5005-5010. [PMID: 38329236 PMCID: PMC10885151 DOI: 10.1021/jacs.4c00482] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 01/24/2024] [Accepted: 01/24/2024] [Indexed: 02/09/2024]
Abstract
Radical hydrofunctionalizations of electronically unbiased dienes are challenging to render regioselective, because the products are nearly identical in energy. Here, we report two engineered FMN-dependent "ene"-reductases (EREDs) that catalyze regiodivergent hydroalkylations of cyclic and linear dienes. While previous studies focused exclusively on the stereoselectivity of alkene hydroalkylation, this work highlights that EREDs can control the regioselectivity of hydrogen atom transfer, providing a method for selectively preparing constitutional isomers that would be challenging to prepare using traditional synthetic methods. Engineering the ERED from Gluconabacter sp. (GluER) furnished a variant that favors the γ,δ-unsaturated ketone, while an engineered variant from a commercial ERED panel favors the δ,ε-unsaturated ketone. The effect of beneficial mutations has been investigated using substrate docking studies and the mechanism probed by isotope labeling experiments. A variety of α-bromo ketones can be coupled with cyclic and linear dienes. These interesting building blocks can also be further modified to generate difficult-to-access heterocyclic compounds.
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Affiliation(s)
- Mark R. Petchey
- Compound
Synthesis and Management, Discovery Sciences,
BioPharma R&D, AstraZeneca,
Pepparedsleden 1, 431 83 Mölndal, Sweden
| | - Yuxuan Ye
- Department
of Chemistry and Chemical Biology, Cornell
University, Ithaca 14850, New York, United States
| | - Victor Spelling
- Early
Chemical Development, Pharmaceutical Sciences, BioPharma R&D, AstraZeneca,
Pepparedsleden 1, 431 83 Mölndal, Sweden
| | - James D. Finnigan
- Prozomix
Ltd., Building 4, West
End Industrial Estate, Haltwhistle NE49 9HA, U.K.
| | - Samantha Gittings
- Prozomix
Ltd., Building 4, West
End Industrial Estate, Haltwhistle NE49 9HA, U.K.
| | - Magnus J. Johansson
- Medicinal
Chemistry, Research and Early Development, Cardiovascular, Renal and
Metabolism (CVRM), BioPharma R&D, AstraZeneca, Pepparedsleden 1, 431 83 Mölndal, Sweden
| | - Martin A. Hayes
- Compound
Synthesis and Management, Discovery Sciences,
BioPharma R&D, AstraZeneca,
Pepparedsleden 1, 431 83 Mölndal, Sweden
| | - Todd K. Hyster
- Department
of Chemistry and Chemical Biology, Cornell
University, Ithaca 14850, New York, United States
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21
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Reed JH, Seebeck FP. Reagent Engineering for Group Transfer Biocatalysis. Angew Chem Int Ed Engl 2024; 63:e202311159. [PMID: 37688533 DOI: 10.1002/anie.202311159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 09/05/2023] [Accepted: 09/08/2023] [Indexed: 09/11/2023]
Abstract
Biocatalysis has become a major driver in the innovation of preparative chemistry. Enzyme discovery, engineering and computational design have matured to reliable strategies in the development of biocatalytic processes. By comparison, substrate engineering has received much less attention. In this Minireview, we highlight the idea that the design of synthetic reagents may be an equally fruitful and complementary approach to develop novel enzyme-catalysed group transfer chemistry. This Minireview discusses key examples from the literature that illustrate how synthetic substrates can be devised to improve the efficiency, scalability and sustainability, as well as the scope of such reactions. We also provide an opinion as to how this concept might be further developed in the future, aspiring to replicate the evolutionary success story of natural group transfer reagents, such as adenosine triphosphate (ATP) and S-adenosyl methionine (SAM).
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Affiliation(s)
- John H Reed
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4002, Basel, Switzerland
- Molecular Systems Engineering, National Competence Center in Research, 4058, Basel, Switzerland
| | - Florian P Seebeck
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4002, Basel, Switzerland
- Molecular Systems Engineering, National Competence Center in Research, 4058, Basel, Switzerland
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22
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Li M, Harrison W, Zhang Z, Yuan Y, Zhao H. Remote stereocontrol with azaarenes via enzymatic hydrogen atom transfer. Nat Chem 2024; 16:277-284. [PMID: 37973942 DOI: 10.1038/s41557-023-01368-x] [Citation(s) in RCA: 26] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 10/13/2023] [Indexed: 11/19/2023]
Abstract
Strategies for achieving asymmetric catalysis with azaarenes have traditionally fallen short of accomplishing remote stereocontrol, which would greatly enhance accessibility to distinct azaarenes with remote chiral centres. The primary obstacle to achieving superior enantioselectivity for remote stereocontrol has been the inherent rigidity of the azaarene ring structure. Here we introduce an ene-reductase system capable of modulating the enantioselectivity of remote carbon-centred radicals on azaarenes through a mechanism of chiral hydrogen atom transfer. This photoenzymatic process effectively directs prochiral radical centres located more than six chemical bonds, or over 6 Å, from the nitrogen atom in azaarenes, thereby enabling the production of a broad array of azaarenes possessing a remote γ-stereocentre. Results from our integrated computational and experimental investigations underscore that the hydrogen bonding and steric effects of key amino acid residues are important for achieving such high stereoselectivities.
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Affiliation(s)
- Maolin Li
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Carl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Wesley Harrison
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Carl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Zhengyi Zhang
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Carl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Yujie Yuan
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Carl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Huimin Zhao
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
- Carl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
- NSF Molecular Maker Lab Institute, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
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23
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Phintha A, Chaiyen P. Unifying and versatile features of flavin-dependent monooxygenases: Diverse catalysis by a common C4a-(hydro)peroxyflavin. J Biol Chem 2023; 299:105413. [PMID: 37918809 PMCID: PMC10696468 DOI: 10.1016/j.jbc.2023.105413] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Revised: 10/18/2023] [Accepted: 10/22/2023] [Indexed: 11/04/2023] Open
Abstract
Flavin-dependent monooxygenases (FDMOs) are known for their remarkable versatility and for their crucial roles in various biological processes and applications. Extensive research has been conducted to explore the structural and functional relationships of FDMOs. The majority of reported FDMOs utilize C4a-(hydro)peroxyflavin as a reactive intermediate to incorporate an oxygen atom into a wide range of compounds. This review discusses and analyzes recent advancements in our understanding of the structural and mechanistic features governing the enzyme functions. State-of-the-art discoveries related to common and distinct structural properties governing the catalytic versatility of the C4a-(hydro)peroxyflavin intermediate in selected FDMOs are discussed. Specifically, mechanisms of hydroxylation, dehalogenation, halogenation, and light-emitting reactions by FDMOs are highlighted. We also provide new analysis based on the structural and mechanistic features of these enzymes to gain insights into how the same intermediate can be harnessed to perform a wide variety of reactions. Challenging questions to obtain further breakthroughs in the understanding of FDMOs are also proposed.
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Affiliation(s)
- Aisaraphon Phintha
- School of Biomolecular Science and Engineering, Vidyasirimedhi Institute of Science and Technology (VISTEC), Wangchan Valley, Rayong, Thailand
| | - Pimchai Chaiyen
- School of Biomolecular Science and Engineering, Vidyasirimedhi Institute of Science and Technology (VISTEC), Wangchan Valley, Rayong, Thailand.
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24
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Liu Y, Zhu L, Li X, Cui Y, Roosta A, Feng J, Chen X, Yao P, Wu Q, Zhu D. Photoredox/Enzymatic Catalysis Enabling Redox-Neutral Decarboxylative Asymmetric C-C Coupling for Asymmetric Synthesis of Chiral 1,2-Amino Alcohols. JACS AU 2023; 3:3005-3013. [PMID: 38034963 PMCID: PMC10685423 DOI: 10.1021/jacsau.3c00366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Revised: 10/04/2023] [Accepted: 10/04/2023] [Indexed: 12/02/2023]
Abstract
Photocatalysis offers tremendous opportunities for enzymes to access new functions. Herein, we described a redox-neutral photocatalysis/enzymatic catalysis system for the asymmetric synthesis of chiral 1,2-amino alcohols via decarboxylative radical C-C coupling of N-arylglycines and aldehydes by combining an organic photocatalyst, eosin Y, and carbonyl reductase RasADH. Notably, this protocol avoids using any sacrificial reductants. A possible reaction mechanism proposed is that the transformation proceeds through sequential photoinduced decarboxylative radical addition to an aldehyde and a photoenzymatic deracemization pathway. This redox-neutral photoredox/enzymatic strategy is promising not only for effective synthesis of a series of chiral amino alcohols in a green and sustainable manner but also for the design of other novel C-C radical coupling transformations for the synthesis of bioactive molecules.
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Affiliation(s)
- Yiyin Liu
- National
Engineering Research Center of Industrial Enzymes and Tianjin Engineering
Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of
Sciences, Tianjin 300308, China
- National
Technology Innovation Center for Synthetic Biology, Tianjin 300308, China
| | - Liangyan Zhu
- National
Engineering Research Center of Industrial Enzymes and Tianjin Engineering
Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of
Sciences, Tianjin 300308, China
- National
Technology Innovation Center for Synthetic Biology, Tianjin 300308, China
| | - Xuemei Li
- National
Engineering Research Center of Industrial Enzymes and Tianjin Engineering
Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of
Sciences, Tianjin 300308, China
- National
Technology Innovation Center for Synthetic Biology, Tianjin 300308, China
| | - Yunfeng Cui
- National
Engineering Research Center of Industrial Enzymes and Tianjin Engineering
Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of
Sciences, Tianjin 300308, China
- National
Technology Innovation Center for Synthetic Biology, Tianjin 300308, China
| | - Atefeh Roosta
- National
Engineering Research Center of Industrial Enzymes and Tianjin Engineering
Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of
Sciences, Tianjin 300308, China
- National
Technology Innovation Center for Synthetic Biology, Tianjin 300308, China
| | - Jinhui Feng
- National
Engineering Research Center of Industrial Enzymes and Tianjin Engineering
Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of
Sciences, Tianjin 300308, China
- National
Technology Innovation Center for Synthetic Biology, Tianjin 300308, China
| | - Xi Chen
- National
Engineering Research Center of Industrial Enzymes and Tianjin Engineering
Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of
Sciences, Tianjin 300308, China
- National
Technology Innovation Center for Synthetic Biology, Tianjin 300308, China
| | - Peiyuan Yao
- National
Engineering Research Center of Industrial Enzymes and Tianjin Engineering
Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of
Sciences, Tianjin 300308, China
- National
Technology Innovation Center for Synthetic Biology, Tianjin 300308, China
| | - Qiaqing Wu
- National
Engineering Research Center of Industrial Enzymes and Tianjin Engineering
Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of
Sciences, Tianjin 300308, China
- National
Technology Innovation Center for Synthetic Biology, Tianjin 300308, China
| | - Dunming Zhu
- National
Engineering Research Center of Industrial Enzymes and Tianjin Engineering
Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of
Sciences, Tianjin 300308, China
- National
Technology Innovation Center for Synthetic Biology, Tianjin 300308, China
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25
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Maier KB, Rust LN, Kupara CI, Woods M. Diastereoselective Synthesis of α-Aryl-Substituted LnDOTA Chelates from Achiral Starting Materials by Deracemization Under Mild Conditions. Chemistry 2023; 29:e202301887. [PMID: 37519104 DOI: 10.1002/chem.202301887] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 07/26/2023] [Accepted: 07/26/2023] [Indexed: 08/01/2023]
Abstract
Substituted derivatives of the DOTA framework are of general interest to alter chelate properties and facilitate the conjugation of chelates to other molecular structures. However, the scope of substituents that can be introduced into the α-position has traditionally been limited by the availability of a suitable enantiopure starting materials to facilitate a stereoselective synthesis. Tetra-substituted DOTA derivatives with phenyl and benzoate substituents in the α-position have been prepared. Initial syntheses used enantiopure starting materials but did not afford enantiopure products. This indicates that the integrity of the stereocenters was not preserved during synthesis, despite the homo-chiral diastereoisomer being the major reaction product. The homochiral diastereoisomer could be produced as the major or sole reaction product when starting from racemic or even achiral materials. Deracemization was found to occur during chelation through the formation of an enolate stabilized by the aryl substituent. This general ability of aryl groups to enable deracemization greatly increases the range of substituents that can be introduced into DOTA-type ligands with diastereochemical selectivity.
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Affiliation(s)
- Karley B Maier
- Department of Chemistry, Portland State University 1719, SW 10th Ave, Portland, OR 97201, USA
| | - Lauren N Rust
- Department of Chemistry, Portland State University 1719, SW 10th Ave, Portland, OR 97201, USA
| | - Charlene I Kupara
- Department of Chemistry, Portland State University 1719, SW 10th Ave, Portland, OR 97201, USA
| | - Mark Woods
- Department of Chemistry, Portland State University 1719, SW 10th Ave, Portland, OR 97201, USA
- Advanced Imaging Research Center, Oregon Health and Science University, 1381 SW Sam Jackson Park Road, Portland, OR 97239, USA
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26
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Luján AP, Bhat MF, Tsaturyan S, van Merkerk R, Fu H, Poelarends GJ. Tailored photoenzymatic systems for selective reduction of aliphatic and aromatic nitro compounds fueled by light. Nat Commun 2023; 14:5442. [PMID: 37673927 PMCID: PMC10482925 DOI: 10.1038/s41467-023-41194-w] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Accepted: 08/22/2023] [Indexed: 09/08/2023] Open
Abstract
The selective enzymatic reduction of nitroaliphatic and nitroaromatic compounds to aliphatic amines and amino-, azoxy- and azo-aromatics, respectively, remains a persisting challenge for biocatalysis. Here we demonstrate the light-powered, selective photoenzymatic synthesis of aliphatic amines and amino-, azoxy- and azo-aromatics from the corresponding nitro compounds. The nitroreductase from Bacillus amyloliquefaciens, in synergy with a photocatalytic system based on chlorophyll, promotes selective conversions of electronically-diverse nitroarenes into a series of aromatic amino, azoxy and azo products with excellent yield (up to 97%). The exploitation of an alternative nitroreductase from Enterobacter cloacae enables the tailoring of a photoenzymatic system for the challenging synthesis of aliphatic amines from nitroalkenes and nitroalkanes (up to 90% yield). This photoenzymatic reduction overcomes the competing bio-Nef reaction, typically hindering the complete enzymatic reduction of nitroaliphatics. The results highlight the usefulness of nitroreductases to create selective photoenzymatic systems for the synthesis of precious chemicals, and the effectiveness of chlorophyll as an innocuous photocatalyst, enabling the use of sunlight to drive the photobiocatalytic reactions.
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Affiliation(s)
- Alejandro Prats Luján
- Department of Chemical and Pharmaceutical Biology, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | - Mohammad Faizan Bhat
- Department of Chemical and Pharmaceutical Biology, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | - Sona Tsaturyan
- Department of Chemical and Pharmaceutical Biology, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | - Ronald van Merkerk
- Department of Chemical and Pharmaceutical Biology, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | - Haigen Fu
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14850, USA
| | - Gerrit J Poelarends
- Department of Chemical and Pharmaceutical Biology, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands.
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27
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Bauer T, Hakim YZ, Morawska P. Recent Advances in the Enantioselective Radical Reactions. Molecules 2023; 28:6252. [PMID: 37687085 PMCID: PMC10489153 DOI: 10.3390/molecules28176252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 08/20/2023] [Accepted: 08/23/2023] [Indexed: 09/10/2023] Open
Abstract
The review covers research published since 2017 and is focused on enantioselective synthesis using radical reactions. It describes recent approaches to the asymmetric synthesis of chiral molecules based on the application of the metal catalysis, dual metal and organocatalysis and finally, pure organocatalysis including enzyme catalysis. This review focuses on the synthetic aspects of the methodology and tries to show which compounds can be obtained in enantiomerically enriched forms.
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Affiliation(s)
- Tomasz Bauer
- Faculty of Chemistry, University of Warsaw, L Pasteura 1, PL-02-093 Warsaw, Poland; (Y.Z.H.); (P.M.)
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28
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Guo YY, Tian ZH, Han YC, Ma D, Shao T, Jiang Z. Hantzsch Ester as Efficient and Economical NAD(P)H Mimic for In Vitro Bioredox Reactions. Chemistry 2023; 29:e202301180. [PMID: 37263982 DOI: 10.1002/chem.202301180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Revised: 05/21/2023] [Accepted: 06/01/2023] [Indexed: 06/03/2023]
Abstract
Biocatalysis has emerged as a valuable and reliable tool for industrial and academic societies, particularly in fields related to bioredox reactions. The cost of cofactors, especially those needed to be replenished at stoichiometric amounts or more, is the chief economic concern for bioredox reactions. In this study, a readily accessible, inexpensive, and bench-stable Hantzsch ester is verified as the viable and efficient NAD(P)H mimic by four enzymatic redox transformations, including two non-heme diiron N-oxygenases and two flavin-dependent reductases. This finding provides the potential to significantly reduce the costs of NAD(P)H-relying bioredox reactions.
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Affiliation(s)
- Yuan-Yang Guo
- Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals Key Laboratory of Green Chemical Media and Reactions Ministry of Education NMPA Key Laboratory for Research and Evaluation of Innovative Drug Henan Key Laboratory of Organic Functional Molecule and Drug Innovation School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China
| | - Ze-Hua Tian
- Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals Key Laboratory of Green Chemical Media and Reactions Ministry of Education NMPA Key Laboratory for Research and Evaluation of Innovative Drug Henan Key Laboratory of Organic Functional Molecule and Drug Innovation School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China
| | - Yu-Chen Han
- Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals Key Laboratory of Green Chemical Media and Reactions Ministry of Education NMPA Key Laboratory for Research and Evaluation of Innovative Drug Henan Key Laboratory of Organic Functional Molecule and Drug Innovation School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China
| | - Dandan Ma
- Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals Key Laboratory of Green Chemical Media and Reactions Ministry of Education NMPA Key Laboratory for Research and Evaluation of Innovative Drug Henan Key Laboratory of Organic Functional Molecule and Drug Innovation School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China
| | - Tianju Shao
- Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals Key Laboratory of Green Chemical Media and Reactions Ministry of Education NMPA Key Laboratory for Research and Evaluation of Innovative Drug Henan Key Laboratory of Organic Functional Molecule and Drug Innovation School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China
| | - Zhiyong Jiang
- Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals Key Laboratory of Green Chemical Media and Reactions Ministry of Education NMPA Key Laboratory for Research and Evaluation of Innovative Drug Henan Key Laboratory of Organic Functional Molecule and Drug Innovation School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China
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29
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Hejna BG, Ganley JM, Shao H, Tian H, Ellefsen JD, Fastuca NJ, Houk KN, Miller SJ, Knowles RR. Catalytic Asymmetric Hydrogen Atom Transfer: Enantioselective Hydroamination of Alkenes. J Am Chem Soc 2023; 145:16118-16129. [PMID: 37432783 PMCID: PMC10544660 DOI: 10.1021/jacs.3c04591] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/13/2023]
Abstract
We report a highly enantioselective radical-based hydroamination of enol esters with sulfonamides jointly catalyzed by an Ir photocatalyst, Brønsted base, and tetrapeptide thiol. This method is demonstrated for the formation of 23 protected β-amino-alcohol products, achieving selectivities up to 97:3 er. The stereochemistry of the product is set through selective hydrogen atom transfer from the chiral thiol catalyst to a prochiral C-centered radical. Structure-selectivity relationships derived from structural variation of both the peptide catalyst and olefin substrate provide key insights into the development of an optimal catalyst. Experimental and computational mechanistic studies indicate that hydrogen-bonding, π-π stacking, and London dispersion interactions are contributing factors for substrate recognition and enantioinduction. These findings further the development of radical-based asymmetric catalysis and contribute to the understanding of the noncovalent interactions relevant to such transformations.
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Affiliation(s)
- Benjamin G. Hejna
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Jacob M. Ganley
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Huiling Shao
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Haowen Tian
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Jonathan D. Ellefsen
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Nicholas J. Fastuca
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - K. N. Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Scott J. Miller
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Robert R. Knowles
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
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30
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Patel C, André-Joyaux E, Leitch JA, de Irujo-Labalde XM, Ibba F, Struijs J, Ellwanger MA, Paton R, Browne DL, Pupo G, Aldridge S, Hayward MA, Gouverneur V. Fluorochemicals from fluorspar via a phosphate-enabled mechanochemical process that bypasses HF. Science 2023; 381:302-306. [PMID: 37471551 DOI: 10.1126/science.adi1557] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Accepted: 06/14/2023] [Indexed: 07/22/2023]
Abstract
All fluorochemicals-including elemental fluorine and nucleophilic, electrophilic, and radical fluorinating reagents-are prepared from hydrogen fluoride (HF). This highly toxic and corrosive gas is produced by the reaction of acid-grade fluorspar (>97% CaF2) with sulfuric acid under harsh conditions. The use of fluorspar to produce fluorochemicals via a process that bypasses HF is highly desirable but remains an unsolved problem because of the prohibitive insolubility of CaF2. Inspired by calcium phosphate biomineralization, we herein disclose a protocol of treating acid-grade fluorspar with dipotassium hydrogen phosphate (K2HPO4) under mechanochemical conditions. The process affords a solid composed of crystalline K3(HPO4)F and K2-xCay(PO3F)a(PO4)b, which is found suitable for forging sulfur-fluorine and carbon-fluorine bonds.
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Affiliation(s)
- Calum Patel
- Chemistry Research Laboratory, University of Oxford, Oxford OX1 3TA, UK
| | - Emy André-Joyaux
- Chemistry Research Laboratory, University of Oxford, Oxford OX1 3TA, UK
| | - Jamie A Leitch
- Department of Pharmaceutical and Biological Chemistry, University College London School of Pharmacy, London W1CN 1AX, UK
- FluoRok Ltd., Begbroke Science Park, Begbroke Hill, Woodstock Road, Begbroke OX5 1PF, UK
| | | | - Francesco Ibba
- Chemistry Research Laboratory, University of Oxford, Oxford OX1 3TA, UK
- FluoRok Ltd., Begbroke Science Park, Begbroke Hill, Woodstock Road, Begbroke OX5 1PF, UK
| | - Job Struijs
- Chemistry Research Laboratory, University of Oxford, Oxford OX1 3TA, UK
| | | | - Robert Paton
- Department of Chemistry, Colorado State University, Fort Collins, CO 80528, USA
| | - Duncan L Browne
- Department of Pharmaceutical and Biological Chemistry, University College London School of Pharmacy, London W1CN 1AX, UK
| | - Gabriele Pupo
- Chemistry Research Laboratory, University of Oxford, Oxford OX1 3TA, UK
- FluoRok Ltd., Begbroke Science Park, Begbroke Hill, Woodstock Road, Begbroke OX5 1PF, UK
| | - Simon Aldridge
- Chemistry Research Laboratory, University of Oxford, Oxford OX1 3TA, UK
| | - Michael A Hayward
- Inorganic Chemistry Laboratory, University of Oxford, Oxford OX1 3QR, UK
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31
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Fu W, Neris NM, Fu Y, Zhao Y, Krohn-Hansen B, Liu P, Yang Y. Enzyme-controlled stereoselective radical cyclization to arenes enabled by metalloredox biocatalysis. Nat Catal 2023; 6:628-636. [PMID: 38404758 PMCID: PMC10882986 DOI: 10.1038/s41929-023-00986-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2022] [Accepted: 06/13/2023] [Indexed: 02/27/2024]
Abstract
The effective induction of high levels of stereocontrol for free radical-mediated transformations represents a notorious challenge in asymmetric catalysis. Herein, we describe a novel metalloredox biocatalysis strategy to repurpose natural cytochromes P450 to catalyse asymmetric radical cyclisation to arenes through an unnatural electron transfer mechanism. Empowered by directed evolution, engineered P450s allowed diverse radical cyclisation selectivities to be accomplished in a catalyst-controlled fashion: P450arc1 and P450arc2 facilitated enantioconvergent transformations of racemic substrates, giving rise to either enantiomer of the product with excellent total turnover numbers (up to 12,000). In addition to these enantioconvergent variants, another engineered radical cyclase, P450arc3, permitted efficient kinetic resolution of racemic chloride substrates (S factor = 18). Furthermore, computational studies revealed a proton-coupled electron transfer (PCET) mechanism for the radical-polar crossover step, suggesting the potential role of the haem carboxylate as a base catalyst. Collectively, the excellent tunability of this metalloenzyme family provides an exciting platform for harnessing free radical intermediates for asymmetric catalysis.
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Affiliation(s)
- Wenzhen Fu
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106, USA
| | - Natalia M. Neris
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106, USA
| | - Yue Fu
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Yunlong Zhao
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106, USA
| | - Benjamin Krohn-Hansen
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106, USA
| | - Peng Liu
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Yang Yang
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106, USA
- Biomolecular Science and Engineering (BMSE) Program, University of California, Santa Barbara, California 93106, USA
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32
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Emmanuel MA, Bender SG, Bilodeau C, Carceller JM, DeHovitz JS, Fu H, Liu Y, Nicholls BT, Ouyang Y, Page CG, Qiao T, Raps FC, Sorigué DR, Sun SZ, Turek-Herman J, Ye Y, Rivas-Souchet A, Cao J, Hyster TK. Photobiocatalytic Strategies for Organic Synthesis. Chem Rev 2023; 123:5459-5520. [PMID: 37115521 PMCID: PMC10905417 DOI: 10.1021/acs.chemrev.2c00767] [Citation(s) in RCA: 82] [Impact Index Per Article: 41.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/29/2023]
Abstract
Biocatalysis has revolutionized chemical synthesis, providing sustainable methods for preparing various organic molecules. In enzyme-mediated organic synthesis, most reactions involve molecules operating from their ground states. Over the past 25 years, there has been an increased interest in enzymatic processes that utilize electronically excited states accessed through photoexcitation. These photobiocatalytic processes involve a diverse array of reaction mechanisms that are complementary to one another. This comprehensive review will describe the state-of-the-art strategies in photobiocatalysis for organic synthesis until December 2022. Apart from reviewing the relevant literature, a central goal of this review is to delineate the mechanistic differences between the general strategies employed in the field. We will organize this review based on the relationship between the photochemical step and the enzymatic transformations. The review will include mechanistic studies, substrate scopes, and protein optimization strategies. By clearly defining mechanistically-distinct strategies in photobiocatalytic chemistry, we hope to illuminate future synthetic opportunities in the area.
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Affiliation(s)
- Megan A Emmanuel
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Sophie G Bender
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Catherine Bilodeau
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Jose M Carceller
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
- Institute of Chemical Technology (ITQ), Universitat Politècnica de València, València 46022,Spain
| | - Jacob S DeHovitz
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Haigen Fu
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Yi Liu
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Bryce T Nicholls
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Yao Ouyang
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Claire G Page
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Tianzhang Qiao
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Felix C Raps
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Damien R Sorigué
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
- Aix-Marseille University, CEA, CNRS, Institute of Biosciences and Biotechnologies, BIAM Cadarache, 13108 Saint-Paul-lez-Durance, France
| | - Shang-Zheng Sun
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Joshua Turek-Herman
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Yuxuan Ye
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Ariadna Rivas-Souchet
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Jingzhe Cao
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Todd K Hyster
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
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33
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Fu H, Qiao T, Carceller JM, MacMillan SN, Hyster TK. Asymmetric C-Alkylation of Nitroalkanes via Enzymatic Photoredox Catalysis. J Am Chem Soc 2023; 145:787-793. [PMID: 36608280 DOI: 10.1021/jacs.2c12197] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Tertiary nitroalkanes and the corresponding α-tertiary amines represent important motifs in bioactive molecules and natural products. The C-alkylation of secondary nitroalkanes with electrophiles is a straightforward strategy for constructing tertiary nitroalkanes; however, controlling the stereoselectivity of this type of reaction remains challenging. Here, we report a highly chemo- and stereoselective C-alkylation of nitroalkanes with alkyl halides catalyzed by an engineered flavin-dependent "ene"-reductase (ERED). Directed evolution of the old yellow enzyme from Geobacillus kaustophilus provided a triple mutant, GkOYE-G7, capable of synthesizing tertiary nitroalkanes in high yield and enantioselectivity. Mechanistic studies indicate that the excitation of an enzyme-templated charge-transfer complex formed between the substrates and cofactor is responsible for radical initiation. Moreover, a single-enzyme two-mechanism cascade reaction was developed to prepare tertiary nitroalkanes from simple nitroalkenes, highlighting the potential to use one enzyme for two mechanistically distinct reactions.
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Affiliation(s)
- Haigen Fu
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14850, United States
| | - Tianzhang Qiao
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14850, United States
| | - Jose M Carceller
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14850, United States.,Institute of Chemical Technology (ITQ), Universitat Politècnica de València, València 46022, Spain
| | - Samantha N MacMillan
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14850, United States
| | - Todd K Hyster
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14850, United States
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34
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Ramanathan D, Shi Q, Xu M, Chang R, Peñín B, Funes-Ardoiz I, Ye J. Catalytic asymmetric deuterosilylation of exocyclic olefins with mannose-derived thiols and deuterium oxide. Org Chem Front 2023. [DOI: 10.1039/d2qo01979e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Metal-free, photoinduced asymmetric deuterosilylation of exocyclic olefins has been achieved using a mannose-derived thiol catalyst.
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Affiliation(s)
- Devenderan Ramanathan
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Qinglong Shi
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Meichen Xu
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Rui Chang
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Beatriz Peñín
- Department of Chemistry, Centro de Investigación en Síntesis Química (CISQ), Universidad de La Rioja, Madre de Dios 53, 26006 Logroño, Spain
| | - Ignacio Funes-Ardoiz
- Department of Chemistry, Centro de Investigación en Síntesis Química (CISQ), Universidad de La Rioja, Madre de Dios 53, 26006 Logroño, Spain
| | - Juntao Ye
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
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35
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Luo Y, Wei Q, Yang L, Zhou Y, Cao W, Su Z, Liu X, Feng X. Enantioselective Radical Hydroacylation of α,β-Unsaturated Carbonyl Compounds with Aldehydes by Triplet Excited Anthraquinone. ACS Catal 2022; 12:12984-12992. [DOI: 10.1021/acscatal.2c04047] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Yao Luo
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, China
| | - Qi Wei
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, China
| | - Liangkun Yang
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, China
| | - Yuqiao Zhou
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, China
| | - Weidi Cao
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, China
| | - Zhishan Su
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, China
| | - Xiaohua Liu
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, China
| | - Xiaoming Feng
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, China
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36
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Fu H, Cao J, Qiao T, Qi Y, Charnock SJ, Garfinkle S, Hyster TK. An asymmetric sp 3-sp 3 cross-electrophile coupling using 'ene'-reductases. Nature 2022; 610:302-307. [PMID: 35952713 PMCID: PMC10157439 DOI: 10.1038/s41586-022-05167-1] [Citation(s) in RCA: 66] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Accepted: 08/03/2022] [Indexed: 11/09/2022]
Abstract
The catalytic asymmetric construction of Csp3-Csp3 bonds remains one of the foremost challenges in organic synthesis1. Metal-catalysed cross-electrophile couplings (XECs) have emerged as a powerful tool for C-C bond formation2-5. However, coupling two distinct Csp3 electrophiles with high cross-selectivity and stereoselectivity continues as an unmet challenge. Here we report a highly chemoselective and enantioselective Csp3-Csp3 XEC between alkyl halides and nitroalkanes catalysed by flavin-dependent 'ene'-reductases (EREDs). Photoexcitation of the enzyme-templated charge-transfer complex between an alkyl halide and a flavin cofactor enables the chemoselective reduction of alkyl halide over the thermodynamically favoured nitroalkane partner. The key C-C bond-forming step occurs by means of the reaction of an alkyl radical with an in situ-generated nitronate to form a nitro radical anion that collapses to form nitrite and an alkyl radical. An enzyme-controlled hydrogen atom transfer (HAT) affords high levels of enantioselectivity. This reactivity is unknown in small-molecule catalysis and highlights the potential for enzymes to use new mechanisms to address long-standing synthetic challenges.
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Affiliation(s)
- Haigen Fu
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA
| | - Jingzhe Cao
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA
- Department of Chemistry, Princeton University, Princeton, NJ, USA
| | - Tianzhang Qiao
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA
| | | | | | - Samuel Garfinkle
- Department of Chemistry, Princeton University, Princeton, NJ, USA
| | - Todd K Hyster
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
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37
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Lechner H, Oberdorfer G. Derivatives of Natural Organocatalytic Cofactors and Artificial Organocatalytic Cofactors as Catalysts in Enzymes. Chembiochem 2022; 23:e202100599. [PMID: 35302276 PMCID: PMC9401024 DOI: 10.1002/cbic.202100599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Revised: 03/14/2022] [Indexed: 11/11/2022]
Abstract
Catalytically active non-metal cofactors in enzymes carry out a variety of different reactions. The efforts to develop derivatives of naturally occurring cofactors such as flavins or pyridoxal phosphate and the advances to design new, non-natural cofactors are reviewed here. We report the status quo for enzymes harboring organocatalysts as derivatives of natural cofactors or as artificial ones and their application in the asymmetric synthesis of various compounds.
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Affiliation(s)
- Horst Lechner
- Graz University of TechnologyInstitute of BiochemistryPetersgasse 10–12/II8010GrazAustria
| | - Gustav Oberdorfer
- Graz University of TechnologyInstitute of BiochemistryPetersgasse 10–12/II8010GrazAustria
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38
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Robescu MS, Cendron L, Bacchin A, Wagner K, Reiter T, Janicki I, Merusic K, Illek M, Aleotti M, Bergantino E, Hall M. Asymmetric Proton Transfer Catalysis by Stereocomplementary Old Yellow Enzymes for C═C Bond Isomerization Reaction. ACS Catal 2022. [DOI: 10.1021/acscatal.2c01110] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Marina S. Robescu
- Department of Biology, University of Padova, Padova, Province of Padova 35131, Italy
| | - Laura Cendron
- Department of Biology, University of Padova, Padova, Province of Padova 35131, Italy
| | - Arianna Bacchin
- Institute of Chemistry, University of Graz, Graz, Styria 8010, Austria
| | - Karla Wagner
- Institute of Chemistry, University of Graz, Graz, Styria 8010, Austria
| | - Tamara Reiter
- Institute of Chemistry, University of Graz, Graz, Styria 8010, Austria
| | - Ignacy Janicki
- Department of Heteroorganic Chemistry, Centre of Molecular and Macromolecular Studies, Polish Academy of Sciences, Lodz, Lodz Province 90-001, Poland
| | - Kemal Merusic
- Institute of Chemistry, University of Graz, Graz, Styria 8010, Austria
| | - Maximilian Illek
- Institute of Chemistry, University of Graz, Graz, Styria 8010, Austria
| | - Matteo Aleotti
- Institute of Chemistry, University of Graz, Graz, Styria 8010, Austria
| | - Elisabetta Bergantino
- Department of Biology, University of Padova, Padova, Province of Padova 35131, Italy
| | - Mélanie Hall
- Institute of Chemistry, University of Graz, Graz, Styria 8010, Austria
- Field of Excellence BioHealth, University of Graz, Graz, Styria 8010, Austria
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39
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Yan Y, Yu Z, Zhong W, Hou X, Tao Q, Cao M, Wang L, Cai X, Rao Y, Huang SX. Characterization of Multifunctional and Non-stereoselective Oxidoreductase RubE7/IstO, Expanding the Functional Diversity of the Flavoenzyme Superfamily. Angew Chem Int Ed Engl 2022; 61:e202200189. [PMID: 35191152 DOI: 10.1002/anie.202200189] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Indexed: 12/23/2022]
Abstract
Flavin-dependent enzymes enable a broad range of redox transformations and generally act as monofunctional and stereoselective catalysts. Herein, we report the investigation of a multifunctional and non-stereoselective FMN-dependent oxidoreductase RubE7 from the rubrolone biosynthetic pathway. Our study outlines a single RubE7-catalysed sequential reduction of three spatially distinct bonds in a tropolone ring and a reversible double-bond reduction and dehydrogenation. The crystal structure of IstO (a RubE7 homologue) with 2.0 Å resolution reveals the location of the active site at the interface of two monomers, and the size of active site is large enough to permit both flipping and free rotation of the substrate, resulting in multiple nonselective reduction reactions. Molecular docking and site mutation studies demonstrate that His106 is oriented towards the substrate and is important for the reverse dehydrogenation reaction.
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Affiliation(s)
- Yijun Yan
- State Key Laboratory of Phytochemistry and Plant Resources in West China, CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Zhiyin Yu
- State Key Laboratory of Phytochemistry and Plant Resources in West China, CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Wei Zhong
- State Key Laboratory of Phytochemistry and Plant Resources in West China, CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.,University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiaodong Hou
- Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, 214122, China
| | - Qiaoqiao Tao
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
| | - Minhang Cao
- State Key Laboratory of Phytochemistry and Plant Resources in West China, CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Li Wang
- State Key Laboratory of Phytochemistry and Plant Resources in West China, CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Xiaofeng Cai
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
| | - Yijian Rao
- Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, 214122, China
| | - Sheng-Xiong Huang
- State Key Laboratory of Phytochemistry and Plant Resources in West China, CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
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40
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Kumar Roy T, Sreedharan R, Ghosh P, Gandhi T, Maiti D. Ene-Reductase: A Multifaceted Biocatalyst in Organic Synthesis. Chemistry 2022; 28:e202103949. [PMID: 35133702 DOI: 10.1002/chem.202103949] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Indexed: 12/13/2022]
Abstract
Biocatalysis integrate microbiologists, enzymologists, and organic chemists to access the repertoire of pharmaceutical and agrochemicals with high chemoselectivity, regioselectivity, and enantioselectivity. The saturation of carbon-carbon double bonds by biocatalysts challenges the conventional chemical methodology as it bypasses the use of precious metals (in combination with chiral ligands and molecular hydrogen) or organocatalysts. In this line, Ene-reductases (ERs) from the Old Yellow Enzymes (OYEs) family are found to be a prominent asymmetric biocatalyst that is increasingly used in academia and industries towards unparalleled stereoselective trans-hydrogenations of activated C=C bonds. ERs gained prominence as they were used as individual catalysts, multi-enzyme cascades, and in conjugation with chemical reagents (chemoenzymatic approach). Besides, ERs' participation in the photoelectrochemical and radical-mediated process helps to unlock many scopes outside traditional biocatalysis. These up-and-coming methodologies entice the enzymologists and chemists to explore, expand and harness the chemistries displayed by ERs for industrial settings. Herein, we reviewed the last five year's exploration of organic transformations using ERs.
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Affiliation(s)
- Triptesh Kumar Roy
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Tirupati, Tirupati, India
| | - Ramdas Sreedharan
- Department of Chemistry, School of Advanced Sciences, Vellore Institute of Technology, Vellore, 632014, Tamil Nadu, India
| | - Pintu Ghosh
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai, India
| | - Thirumanavelan Gandhi
- Department of Chemistry, School of Advanced Sciences, Vellore Institute of Technology, Vellore, 632014, Tamil Nadu, India
| | - Debabrata Maiti
- Chemistry Department and Interdisciplinary Program in Climate Studies, Indian Institute of Technology Bombay, Powai, Maharashtra 400076, India
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41
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Yan Y, Yu Z, Zhong W, Hou X, Tao Q, Cao M, Wang L, Cai X, Rao Y, Huang S. Characterization of Multifunctional and Non‐stereoselective Oxidoreductase RubE7/IstO, Expanding the Functional Diversity of the Flavoenzyme Superfamily. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202200189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yijun Yan
- State Key Laboratory of Phytochemistry and Plant Resources in West China CAS Center for Excellence in Molecular Plant Sciences Kunming Institute of Botany Chinese Academy of Sciences Kunming 650201 China
| | - Zhiyin Yu
- State Key Laboratory of Phytochemistry and Plant Resources in West China CAS Center for Excellence in Molecular Plant Sciences Kunming Institute of Botany Chinese Academy of Sciences Kunming 650201 China
| | - Wei Zhong
- State Key Laboratory of Phytochemistry and Plant Resources in West China CAS Center for Excellence in Molecular Plant Sciences Kunming Institute of Botany Chinese Academy of Sciences Kunming 650201 China
- University of the Chinese Academy of Sciences Beijing 100049 China
| | - Xiaodong Hou
- Key Laboratory of Carbohydrate Chemistry and Biotechnology Ministry of Education School of Biotechnology Jiangnan University Wuxi 214122 China
| | - Qiaoqiao Tao
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation School of Pharmacy Tongji Medical College Huazhong University of Science and Technology Wuhan 430030 China
| | - Minhang Cao
- State Key Laboratory of Phytochemistry and Plant Resources in West China CAS Center for Excellence in Molecular Plant Sciences Kunming Institute of Botany Chinese Academy of Sciences Kunming 650201 China
| | - Li Wang
- State Key Laboratory of Phytochemistry and Plant Resources in West China CAS Center for Excellence in Molecular Plant Sciences Kunming Institute of Botany Chinese Academy of Sciences Kunming 650201 China
| | - Xiaofeng Cai
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation School of Pharmacy Tongji Medical College Huazhong University of Science and Technology Wuhan 430030 China
| | - Yijian Rao
- Key Laboratory of Carbohydrate Chemistry and Biotechnology Ministry of Education School of Biotechnology Jiangnan University Wuxi 214122 China
| | - Sheng‐Xiong Huang
- State Key Laboratory of Phytochemistry and Plant Resources in West China CAS Center for Excellence in Molecular Plant Sciences Kunming Institute of Botany Chinese Academy of Sciences Kunming 650201 China
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42
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Mondal S, Dumur F, Gigmes D, Sibi MP, Bertrand MP, Nechab M. Enantioselective Radical Reactions Using Chiral Catalysts. Chem Rev 2022; 122:5842-5976. [DOI: 10.1021/acs.chemrev.1c00582] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Shovan Mondal
- Department of Chemistry, Syamsundar College, Shyamsundar 713424, West Bengal, India
| | - Frédéric Dumur
- Aix Marseille Univ, CNRS, Institut de Chimie Radicalaire UMR 7273, F-13390e Marseille, France
| | - Didier Gigmes
- Aix Marseille Univ, CNRS, Institut de Chimie Radicalaire UMR 7273, F-13390e Marseille, France
| | - Mukund P. Sibi
- Department of Chemistry and Biochemistry North Dakota State University, Fargo, North Dakota 58108, United States
| | - Michèle P. Bertrand
- Aix Marseille Univ, CNRS, Institut de Chimie Radicalaire UMR 7273, F-13390e Marseille, France
| | - Malek Nechab
- Aix Marseille Univ, CNRS, Institut de Chimie Radicalaire UMR 7273, F-13390e Marseille, France
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43
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Gu Y, Yin H, Wakeling M, An J, Martin R. Defunctionalization of sp3 C–Heteroatom and sp3 C–C Bonds Enabled by Photoexcited Triplet Ketone Catalysts. ACS Catal 2022. [DOI: 10.1021/acscatal.1c05329] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Yiting Gu
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology, Av. Països Catalans 16, 43007 Tarragona, Spain
| | - Hongfei Yin
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology, Av. Països Catalans 16, 43007 Tarragona, Spain
| | - Matthew Wakeling
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology, Av. Països Catalans 16, 43007 Tarragona, Spain
| | - Juzeng An
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology, Av. Països Catalans 16, 43007 Tarragona, Spain
| | - Ruben Martin
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology, Av. Països Catalans 16, 43007 Tarragona, Spain
- ICREA, Passeig Lluïs Companys, 23, 08010, Barcelona, Spain
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44
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Miller DC, Athavale SV, Arnold FH. Combining chemistry and protein engineering for new-to-nature biocatalysis. NATURE SYNTHESIS 2022; 1:18-23. [PMID: 35415721 DOI: 10.1038/s44160-021-00008-x] [Citation(s) in RCA: 78] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Biocatalysis, the application of enzymes to solve synthetic problems of human import, has blossomed into a powerful technology for chemical innovation. In the past decade, a threefold partnership, where nature provides blueprints for enzymatic catalysis, chemists introduce innovative activity modes with abiological substrates, and protein engineers develop new tools and algorithms to tune and improve enzymatic function, has unveiled the frontier of new-to-nature enzyme catalysis. In this perspective, we highlight examples of interdisciplinary studies which have helped to expand the scope of biocatalysis, including concepts of enzymatic versatility explored through the lens of biomimicry, to achieve both activities and selectivities that are not currently possible with chemocatalysis. We indicate how modern tools, such as directed evolution, computational protein design and machine learning-based protein engineering methods, have already impacted and will continue to influence enzyme engineering for new abiological transformations. A sustained collaborative effort across disciplines is anticipated to spur further advances in biocatalysis in the coming years.
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Affiliation(s)
- David C Miller
- Division of Chemistry and Chemical Engineering, California Institute of Technology Pasadena, California, 91125
| | - Soumitra V Athavale
- Division of Chemistry and Chemical Engineering, California Institute of Technology Pasadena, California, 91125
| | - Frances H Arnold
- Division of Chemistry and Chemical Engineering, California Institute of Technology Pasadena, California, 91125
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45
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Wang L, Lou Y, Xu W, Chen Z, Xu J, Wu Q. Biocatalytic Site-Selective Hydrogen Isotope Exchange of Unsaturated Fragments with D2O. ACS Catal 2021. [DOI: 10.1021/acscatal.1c05067] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Lanlan Wang
- Center of Chemistry for Frontier Technologies, Department of Chemistry, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Yujiao Lou
- Center of Chemistry for Frontier Technologies, Department of Chemistry, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Weihua Xu
- Center of Chemistry for Frontier Technologies, Department of Chemistry, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Zhichun Chen
- Center of Chemistry for Frontier Technologies, Department of Chemistry, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Jian Xu
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou 310014, People’s Republic of China
| | - Qi Wu
- Center of Chemistry for Frontier Technologies, Department of Chemistry, Zhejiang University, Hangzhou 310027, People’s Republic of China
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46
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Zhou Q, Chin M, Fu Y, Liu P, Yang Y. Stereodivergent atom-transfer radical cyclization by engineered cytochromes P450. Science 2021; 374:1612-1616. [PMID: 34941416 PMCID: PMC9309897 DOI: 10.1126/science.abk1603] [Citation(s) in RCA: 84] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Naturally occurring enzymes can be a source of unnatural reactivity that can be molded by directed evolution to generate efficient biocatalysts with valuable activities. Owing to the lack of exploitable stereocontrol elements in synthetic systems, steering the absolute and relative stereochemistry of free-radical processes is notoriously difficult in asymmetric catalysis. Inspired by the innate redox properties of first-row transition-metal cofactors, we repurposed cytochromes P450 to catalyze stereoselective atom-transfer radical cyclization. A set of metalloenzymes was engineered to impose substantial stereocontrol over the radical addition step and the halogen rebound step in these unnatural processes, allowing enantio- and diastereodivergent radical catalysis. This evolvable metalloenzyme platform represents a promising solution to tame fleeting radical intermediates for asymmetric catalysis.
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Affiliation(s)
- Qi Zhou
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, USA
| | - Michael Chin
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, USA
| | - Yue Fu
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Peng Liu
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Yang Yang
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, USA.,Biomolecular Science and Engineering Program, University of California Santa Barbara, Santa Barbara, California 93106, USA.,Corresponding author.
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47
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Abstract
The Pd-catalyzed carbon-carbon bond formation pioneered by Heck in 1969 has dominated medicinal chemistry development for the ensuing fifty years. As the demand for more complex three-dimensional active pharmaceuticals continues to increase, preparative enzyme-mediated assembly, by virtue of its exquisite selectivity and sustainable nature, is poised to provide a practical and affordable alternative for accessing such compounds. In this minireview, we summarize recent state-of-the-art developments in practical enzyme-mediated assembly of carbocycles. When appropriate, background information on the enzymatic transformation is provided and challenges and/or limitations are also highlighted.
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Affiliation(s)
- Weijin Wang
- Department of Chemistry, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL, 33458, USA
| | - Douglass F Taber
- Department of Chemistry, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL, 33458, USA
| | - Hans Renata
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA
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48
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Hall M. Enzymatic strategies for asymmetric synthesis. RSC Chem Biol 2021; 2:958-989. [PMID: 34458820 PMCID: PMC8341948 DOI: 10.1039/d1cb00080b] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 05/28/2021] [Indexed: 12/13/2022] Open
Abstract
Enzymes, at the turn of the 21st century, are gaining a momentum. Especially in the field of synthetic organic chemistry, a broad variety of biocatalysts are being applied in an increasing number of processes running at up to industrial scale. In addition to the advantages of employing enzymes under environmentally friendly reaction conditions, synthetic chemists are recognizing the value of enzymes connected to the exquisite selectivity of these natural (or engineered) catalysts. The use of hydrolases in enantioselective protocols paved the way to the application of enzymes in asymmetric synthesis, in particular in the context of biocatalytic (dynamic) kinetic resolutions. After two decades of impressive development, the field is now mature to propose a panel of catalytically diverse enzymes for (i) stereoselective reactions with prochiral compounds, such as double bond reduction and bond forming reactions, (ii) formal enantioselective replacement of one of two enantiotopic groups of prochiral substrates, as well as (iii) atroposelective reactions with noncentrally chiral compounds. In this review, the major enzymatic strategies broadly applicable in the asymmetric synthesis of optically pure chiral compounds are presented, with a focus on the reactions developed within the past decade.
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Affiliation(s)
- Mélanie Hall
- Institute of Chemistry, University of Graz Heinrichstrasse 28 8010 Graz Austria
- Field of Excellence BioHealth - University of Graz Austria
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49
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Fu H, Lam H, Emmanuel MA, Kim JH, Sandoval BA, Hyster TK. Ground-State Electron Transfer as an Initiation Mechanism for Biocatalytic C-C Bond Forming Reactions. J Am Chem Soc 2021; 143:9622-9629. [PMID: 34114803 DOI: 10.1021/jacs.1c04334] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The development of non-natural reaction mechanisms is an attractive strategy for expanding the synthetic capabilities of substrate promiscuous enzymes. Here, we report an "ene"-reductase catalyzed asymmetric hydroalkylation of olefins using α-bromoketones as radical precursors. Radical initiation occurs via ground-state electron transfer from the flavin cofactor located within the enzyme active site, an underrepresented mechanism in flavin biocatalysis. Four rounds of site saturation mutagenesis were used to access a variant of the "ene"-reductase nicotinamide-dependent cyclohexanone reductase (NCR) from Zymomonas mobiles capable of catalyzing a cyclization to furnish β-chiral cyclopentanones with high levels of enantioselectivity. Additionally, wild-type NCR can catalyze intermolecular couplings with precise stereochemical control over the radical termination step. This report highlights the utility for ground-state electron transfers to enable non-natural biocatalytic C-C bond forming reactions.
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Affiliation(s)
- Haigen Fu
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States.,Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14850, United States
| | - Heather Lam
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States.,Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14850, United States
| | - Megan A Emmanuel
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Ji Hye Kim
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Braddock A Sandoval
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Todd K Hyster
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States.,Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14850, United States
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Ye Y, Fu H, Hyster TK. Activation modes in biocatalytic radical cyclization reactions. J Ind Microbiol Biotechnol 2021; 48:kuab021. [PMID: 33674826 PMCID: PMC8210684 DOI: 10.1093/jimb/kuab021] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 02/26/2021] [Indexed: 12/17/2022]
Abstract
Radical cyclizations are essential reactions in the biosynthesis of secondary metabolites and the chemical synthesis of societally valuable molecules. In this review, we highlight the general mechanisms utilized in biocatalytic radical cyclizations. We specifically highlight cytochrome P450 monooxygenases (P450s) involved in the biosynthesis of mycocyclosin and vancomycin, nonheme iron- and α-ketoglutarate-dependent dioxygenases (Fe/αKGDs) used in the biosynthesis of kainic acid, scopolamine, and isopenicillin N, and radical S-adenosylmethionine (SAM) enzymes that facilitate the biosynthesis of oxetanocin A, menaquinone, and F420. Beyond natural mechanisms, we also examine repurposed flavin-dependent "ene"-reductases (ERED) for non-natural radical cyclization. Overall, these general mechanisms underscore the opportunity for enzymes to augment and enhance the synthesis of complex molecules using radical mechanisms.
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Affiliation(s)
- Yuxuan Ye
- Department of Chemistry, Princeton University, Princeton, NJ 08544, USA
| | - Haigen Fu
- Department of Chemistry, Princeton University, Princeton, NJ 08544, USA
| | - Todd K Hyster
- Department of Chemistry, Princeton University, Princeton, NJ 08544, USA
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