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For: Seibert J, Bannwarth C, Grimme S. Biomolecular Structure Information from High-Speed Quantum Mechanical Electronic Spectra Calculation. J Am Chem Soc 2017;139:11682-11685. [DOI: 10.1021/jacs.7b05833] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
de Wergifosse M. Computing Excited States of Very Large Systems with Range-Separated Hybrid Functionals and the Exact Integral Simplified Time-Dependent Density Functional Theory (XsTD-DFT). J Phys Chem Lett 2024;15:12628-12635. [PMID: 39686879 DOI: 10.1021/acs.jpclett.4c03193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2024]
2
Moyer AP, Ramelot TA, Curti M, Eastman MA, Kang A, Bera AK, Tejero R, Salveson PJ, Curutchet C, Romero E, Montelione GT, Baker D. Enumerative Discovery of Noncanonical Polypeptide Secondary Structures. J Am Chem Soc 2024;146:25501-25512. [PMID: 39231524 PMCID: PMC11421003 DOI: 10.1021/jacs.4c04991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/06/2024]
3
Xiang FF, Zhang H, Wu YL, Chen YJ, Liu YZ, Chen SY, Guo YZ, Yu XQ, Li K. Machine-Learning-Assisted Rational Design of Si─Rhodamine as Cathepsin-pH-Activated Probe for Accurate Fluorescence Navigation. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024;36:e2404828. [PMID: 38781580 DOI: 10.1002/adma.202404828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 05/06/2024] [Indexed: 05/25/2024]
4
Zhang Y, Fan M, Xu Z, Jiang Y, Ding H, Li Z, Shu K, Zhao M, Feng G, Yong KT, Dong B, Zhu W, Xu G. Machine-learning screening of luminogens with aggregation-induced emission characteristics for fluorescence imaging. J Nanobiotechnology 2023;21:107. [PMID: 36964565 PMCID: PMC10039567 DOI: 10.1186/s12951-023-01864-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 03/18/2023] [Indexed: 03/26/2023]  Open
5
Han Y, Wang Z, Chen A, Ali I, Cai J, Ye S, Wei Z, Li J. A deep transfer learning-based protocol accelerates full quantum mechanics calculation of protein. Brief Bioinform 2023;24:6901901. [PMID: 36516300 DOI: 10.1093/bib/bbac532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Revised: 10/07/2022] [Accepted: 11/07/2022] [Indexed: 12/15/2022]  Open
6
Chen Z, Lu YL, Wang L, Xu J, Zhang J, Xu X, Cheng P, Yang S, Shi W. Efficient Recognition and Removal of Persistent Organic Pollutants by a Bifunctional Molecular Material. J Am Chem Soc 2023;145:260-267. [PMID: 36538618 DOI: 10.1021/jacs.2c09866] [Citation(s) in RCA: 38] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
7
Rogers DM, Do H, Hirst JD. Electronic circular dichroism of proteins computed using a diabatisation scheme. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2133748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
8
Tang S, Yang T, Zhao Z, Zhu T, Zhang Q, Hou W, Yuan WZ. Nonconventional luminophores: characteristics, advancements and perspectives. Chem Soc Rev 2021;50:12616-12655. [PMID: 34610056 DOI: 10.1039/d0cs01087a] [Citation(s) in RCA: 150] [Impact Index Per Article: 37.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
9
Ketkaew R, Creazzo F, Luber S. Closer Look at Inverse Electron Demand Diels–Alder and Nucleophilic Addition Reactions on s-Tetrazines Using Enhanced Sampling Methods. Top Catal 2021;65:1-17. [PMID: 35153451 PMCID: PMC8816378 DOI: 10.1007/s11244-021-01516-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/25/2021] [Indexed: 12/30/2022]
10
Zhang J, Ye S, Zhong K, Zhang Y, Chong Y, Zhao L, Zhou H, Guo S, Zhang G, Jiang B, Mukamel S, Jiang J. A Machine-Learning Protocol for Ultraviolet Protein-Backbone Absorption Spectroscopy under Environmental Fluctuations. J Phys Chem B 2021;125:6171-6178. [PMID: 34086461 DOI: 10.1021/acs.jpcb.1c03296] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
11
de Wergifosse M, Grimme S. Perspective on Simplified Quantum Chemistry Methods for Excited States and Response Properties. J Phys Chem A 2021;125:3841-3851. [PMID: 33928774 DOI: 10.1021/acs.jpca.1c02362] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
12
Facchetti G, Bucci R, Fusè M, Erba E, Gandolfi R, Pellegrino S, Rimoldi I. Alternative Strategy to Obtain Artificial Imine Reductase by Exploiting Vancomycin/D-Ala-D-Ala Interactions with an Iridium Metal Complex. Inorg Chem 2021;60:2976-2982. [PMID: 33550804 DOI: 10.1021/acs.inorgchem.0c02969] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
13
Ju CW, Bai H, Li B, Liu R. Machine Learning Enables Highly Accurate Predictions of Photophysical Properties of Organic Fluorescent Materials: Emission Wavelengths and Quantum Yields. J Chem Inf Model 2021;61:1053-1065. [PMID: 33620207 DOI: 10.1021/acs.jcim.0c01203] [Citation(s) in RCA: 56] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
14
Bursch M, Hansen A, Pracht P, Kohn JT, Grimme S. Theoretical study on conformational energies of transition metal complexes. Phys Chem Chem Phys 2021;23:287-299. [PMID: 33336657 DOI: 10.1039/d0cp04696e] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
15
Bannwarth C, Caldeweyher E, Ehlert S, Hansen A, Pracht P, Seibert J, Spicher S, Grimme S. Extended tight‐binding quantum chemistry methods. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2020. [DOI: 10.1002/wcms.1493] [Citation(s) in RCA: 643] [Impact Index Per Article: 128.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
16
Auvray F, Hirst JD. Unfolding Dynamics of a Photoswitchable Helical Peptide. J Phys Chem B 2020;124:5380-5392. [PMID: 32515979 DOI: 10.1021/acs.jpcb.0c04017] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
17
Fernandez‐Corbaton I, Beutel D, Rockstuhl C, Pausch A, Klopper W. Computation of Electromagnetic Properties of Molecular Ensembles. Chemphyschem 2020;21:878-887. [PMID: 32101636 PMCID: PMC7317848 DOI: 10.1002/cphc.202000072] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Indexed: 11/17/2022]
18
Schmitz S, Seibert J, Ostermeir K, Hansen A, Göller AH, Grimme S. Quantum Chemical Calculation of Molecular and Periodic Peptide and Protein Structures. J Phys Chem B 2020;124:3636-3646. [PMID: 32275425 DOI: 10.1021/acs.jpcb.0c00549] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
19
Seibert J, Champagne B, Grimme S, de Wergifosse M. Dynamic Structural Effects on the Second-Harmonic Generation of Tryptophane-Rich Peptides and Gramicidin A. J Phys Chem B 2020;124:2568-2578. [DOI: 10.1021/acs.jpcb.0c00643] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
20
Pracht P, Bohle F, Grimme S. Automated exploration of the low-energy chemical space with fast quantum chemical methods. Phys Chem Chem Phys 2020;22:7169-7192. [PMID: 32073075 DOI: 10.1039/c9cp06869d] [Citation(s) in RCA: 1109] [Impact Index Per Article: 221.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
21
Rogers DM, Jasim SB, Dyer NT, Auvray F, Réfrégiers M, Hirst JD. Electronic Circular Dichroism Spectroscopy of Proteins. Chem 2019. [DOI: 10.1016/j.chempr.2019.07.008] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
22
Martynov AG, Mack J, May AK, Nyokong T, Gorbunova YG, Tsivadze AY. Methodological Survey of Simplified TD-DFT Methods for Fast and Accurate Interpretation of UV-Vis-NIR Spectra of Phthalocyanines. ACS OMEGA 2019;4:7265-7284. [PMID: 31459828 PMCID: PMC6648833 DOI: 10.1021/acsomega.8b03500] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Accepted: 04/11/2019] [Indexed: 05/14/2023]
23
Grimme S. Exploration of Chemical Compound, Conformer, and Reaction Space with Meta-Dynamics Simulations Based on Tight-Binding Quantum Chemical Calculations. J Chem Theory Comput 2019;15:2847-2862. [PMID: 30943025 DOI: 10.1021/acs.jctc.9b00143] [Citation(s) in RCA: 583] [Impact Index Per Article: 97.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
24
de Wergifosse M, Grimme S. Nonlinear-response properties in a simplified time-dependent density functional theory (sTD-DFT) framework: Evaluation of excited-state absorption spectra. J Chem Phys 2019;150:094112. [DOI: 10.1063/1.5080199] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
25
Bannwarth C, Ehlert S, Grimme S. GFN2-xTB-An Accurate and Broadly Parametrized Self-Consistent Tight-Binding Quantum Chemical Method with Multipole Electrostatics and Density-Dependent Dispersion Contributions. J Chem Theory Comput 2019;15:1652-1671. [PMID: 30741547 DOI: 10.1021/acs.jctc.8b01176] [Citation(s) in RCA: 1827] [Impact Index Per Article: 304.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
26
Seibert J, Pisarek J, Schmitz S, Bannwarth C, Grimme S. Extension of the element parameter set for ultra-fast excitation spectra calculation (sTDA-xTB). Mol Phys 2018. [DOI: 10.1080/00268976.2018.1510141] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
27
Ianeselli A, Orioli S, Spagnolli G, Faccioli P, Cupellini L, Jurinovich S, Mennucci B. Atomic Detail of Protein Folding Revealed by an Ab Initio Reappraisal of Circular Dichroism. J Am Chem Soc 2018;140:3674-3682. [DOI: 10.1021/jacs.7b12399] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
28
Šmidlehner T, Piantanida I, Pescitelli G. Polarization spectroscopy methods in the determination of interactions of small molecules with nucleic acids - tutorial. Beilstein J Org Chem 2018;14:84-105. [PMID: 29441133 PMCID: PMC5789433 DOI: 10.3762/bjoc.14.5] [Citation(s) in RCA: 96] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Accepted: 12/13/2017] [Indexed: 01/19/2023]  Open
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