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Cheng X, Cheng X, Huang R, Zeng L, Song D, Zhang X, Wang Y, Huang TX, Chen K, Fang N, Li X. Digitally Assisted Single-Particle Tracking for Accurate Analysis of Complicated Cargo Transport Dynamics in Microtubule Networks. Anal Chem 2025. [PMID: 40243168 DOI: 10.1021/acs.analchem.4c07046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/18/2025]
Abstract
Intracellular transport is a fundamental process crucial for cellular function, driven by the coordinated action of motor proteins that move cargo along microtubule tracks. Traditional tracking methods primarily focus on cargo trajectories, often overlooking rotational dynamics and their impact on cargo interactions with the complex microtubule network. To address this limitation, we introduced a digitally assisted single-particle tracking (dSPT) method that significantly advances the angular resolution of intracellular cargo dynamics. By integrating intensity measurements with advanced digital classification algorithms to process defocused half-plane image patterns captured through bifocal parallax microscopy, this approach extends the angular resolution range from the conventional method to a full 0-360° range, even in heterogeneous cellular environments, while maintaining high spatial and temporal resolutions. In intracellular transport events, we directly observed the accurate determination of the chiral rotational directions and precise calculation of the step angles. When combined with super-resolution radial fluctuation (SRRF) imaging to achieve higher-resolution microtubule imaging, our dSPT technique enables in vivo investigations of cargo dynamics during intracellular transport. To validate this, we studied the rotational dynamics of the cargo in microtubule confinement. Furthermore, we identified characteristic patch-searching patterns in the microtubule network, where cargo exhibited a combined motion pattern of confined and hopping diffusion to navigate through the constraints imposed by the microtubules.
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Affiliation(s)
- Xiaodong Cheng
- State Key Laboratory of Macromolecular Drugs and Large-scale Manufacturing, School of Pharmaceutical Sciences, Wenzhou Medical University, Wenzhou 325035, China
| | - Xiaojuan Cheng
- State Key Laboratory of Macromolecular Drugs and Large-scale Manufacturing, School of Pharmaceutical Sciences, Wenzhou Medical University, Wenzhou 325035, China
| | - Riyang Huang
- State Key Laboratory of Macromolecular Drugs and Large-scale Manufacturing, School of Pharmaceutical Sciences, Wenzhou Medical University, Wenzhou 325035, China
| | - Linying Zeng
- State Key Laboratory of Macromolecular Drugs and Large-scale Manufacturing, School of Pharmaceutical Sciences, Wenzhou Medical University, Wenzhou 325035, China
| | - Dongliang Song
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Xin Zhang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Yan Wang
- State Key Laboratory of Macromolecular Drugs and Large-scale Manufacturing, School of Pharmaceutical Sciences, Wenzhou Medical University, Wenzhou 325035, China
| | - Teng-Xiang Huang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Kuangcai Chen
- Imaging Core Facility, Georgia State University, Atlanta, Georgia 30302, United States
| | - Ning Fang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Xiaokun Li
- State Key Laboratory of Macromolecular Drugs and Large-scale Manufacturing, School of Pharmaceutical Sciences, Wenzhou Medical University, Wenzhou 325035, China
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Jang J, Shin J, Ahn Y, Kim K, Cho J, Lee WJ, Nam C, Baek MC, Seo D, Yea K. Modular and Nondisturbing Chimeric Adaptor Protein for Surface Chemistry of Small Extracellular Vesicles. ACS NANO 2025; 19:12839-12852. [PMID: 40119814 DOI: 10.1021/acsnano.4c15441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/24/2025]
Abstract
Current chemical strategies for modifying the surface of extracellular vesicles (sEVs) often struggle to balance efficient functionalization with preserving structural integrity. Here, we present a modular approach for the surface modification of sEVs using a chimeric adaptor protein (CAP). The CAP was designed with three key features: a SNAP-tag for stable and modular binding, long and rigid linker to enhance spatial accessibility and conjugation efficiency, and the N-terminal sorting domain derived from syntenin to improve CAP expression on the sEV. We established a postsynthetic method to introduce diverse functional molecules onto sEVs, creating a versatile system termed "sEV-X" (where X represents an organic molecule, protein, or nanoparticle). Quantitative analyses at the single-molecule level revealed a linear relationship between CAP expression and the number of conjugated functional molecules, underscoring the importance of steric hindrance mitigation in sEV surface engineering. Moreover, antibody-conjugated sEVs as drug carriers, demonstrated significant tumor-specific delivery and therapeutic efficacy in a tumor-bearing mouse model, underscoring the potential of CAP-expressing sEVs as a customizable therapeutic vesicle. Overall, the CAP technology may serve as a universal platform for advancing the development of sEV-based therapeutics.
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Affiliation(s)
- Juhee Jang
- Department of Physics and Chemistry, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 42988, Republic of Korea
| | - Jiwon Shin
- Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 42988, Republic of Korea
| | - Yongdeok Ahn
- Department of Physics and Chemistry, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 42988, Republic of Korea
| | - Kiwook Kim
- Department of Physics and Chemistry, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 42988, Republic of Korea
| | - Juhyeong Cho
- Department of Physics and Chemistry, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 42988, Republic of Korea
| | - Wonhee John Lee
- Department of Physics and Chemistry, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 42988, Republic of Korea
| | - Chaerin Nam
- Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 42988, Republic of Korea
| | - Moon-Chang Baek
- Department of Molecular Medicine, CMRI, Exosome Convergence Research Center (ECRC), School of Medicine, Kyungpook National University, Daegu 41944, Republic of Korea
| | - Daeha Seo
- Department of Physics and Chemistry, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 42988, Republic of Korea
| | - Kyungmoo Yea
- Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 42988, Republic of Korea
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Jin S, Ahn Y, Park J, Park M, Lee S, Lee WJ, Seo D. Temporal Patterns of Angular Displacement of Endosomes: Insights into Motor Protein Exchange Dynamics. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2306849. [PMID: 38828676 PMCID: PMC11304332 DOI: 10.1002/advs.202306849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 03/24/2024] [Indexed: 06/05/2024]
Abstract
The material transport system, facilitated by motor proteins, plays a vital role in maintaining a non-equilibrium cellular state. However, understanding the temporal coordination of motor protein activity requires an advanced imaging technique capable of measuring 3D angular displacement in real-time. In this study, a Fourier transform-based plasmonic dark-field microscope has been developed using anisotropic nanoparticles, enabling the prolonged and simultaneous observation of endosomal lateral and rotational motion. A sequence of discontinuous 3D angular displacements has been observed during the pause and run phases of transport. Notably, a serially correlated temporal pattern in the intermittent rotational events has been demonstrated during the tug-of-war mechanism, indicating Markovian switching between the exploitational and explorational modes of motor protein exchange prior to resuming movement. Alterations in transition frequency and the exploitation-to-exploration ratio upon dynein inhibitor treatment highlight the relationship between disrupted motor coordination and reduced endosomal transport efficiency. Collectively, these results suggest the importance of orchestrated temporal motor protein patterns for efficient cellular transport.
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Affiliation(s)
- Siwoo Jin
- Department of Physics and ChemistryDGISTDaegu42988Republic of Korea
| | - Yongdeok Ahn
- Department of Physics and ChemistryDGISTDaegu42988Republic of Korea
| | - Jiseong Park
- Department of Physics and ChemistryDGISTDaegu42988Republic of Korea
| | - Minsoo Park
- Department of Physics and ChemistryDGISTDaegu42988Republic of Korea
| | - Sang‐Chul Lee
- Division of Nanotechnology, and Department of DGISTDaegu42988Republic of Korea
| | - Wonhee J. Lee
- Department of Physics and ChemistryDGISTDaegu42988Republic of Korea
| | - Daeha Seo
- Department of Physics and ChemistryDGISTDaegu42988Republic of Korea
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Park J, Jin S, Jang J, Seo D. Single-Molecule Imaging of Membrane Proteins on Vascular Endothelial Cells. J Lipid Atheroscler 2023; 12:58-72. [PMID: 36761059 PMCID: PMC9884557 DOI: 10.12997/jla.2023.12.1.58] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 09/19/2022] [Accepted: 09/22/2022] [Indexed: 01/26/2023] Open
Abstract
Transporting substances such as gases, nutrients, waste, and cells is the primary function of blood vessels. Vascular cells use membrane proteins to perform crucial endothelial functions, including molecular transport, immune cell infiltration, and angiogenesis. A thorough understanding of these membrane receptors from a clinical perspective is warranted to gain insights into the pathogenesis of vascular diseases and to develop effective methods for drug delivery through the vascular endothelium. This review summarizes state-of-the-art single-molecule imaging techniques, such as super-resolution microscopy, single-molecule tracking, and protein-protein interaction analysis, for observing and studying membrane proteins. Furthermore, recent single-molecule studies of membrane proteins such as cadherins, integrins, caveolins, transferrin receptors, vesicle-associated protein-1, and vascular endothelial growth factor receptor are discussed.
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Affiliation(s)
- Jiseong Park
- Department of Physics and Chemistry, Daegu Gyeongbuk Institute of Science & Technology (DGIST), Daegu, Korea
| | - Siwoo Jin
- Department of Physics and Chemistry, Daegu Gyeongbuk Institute of Science & Technology (DGIST), Daegu, Korea
| | - Juhee Jang
- Department of Physics and Chemistry, Daegu Gyeongbuk Institute of Science & Technology (DGIST), Daegu, Korea
| | - Daeha Seo
- Department of Physics and Chemistry, Daegu Gyeongbuk Institute of Science & Technology (DGIST), Daegu, Korea
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