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Harris TD, Reinl KL, Azarderakhsh M, Berger SA, Berman MC, Bizic M, Bhattacharya R, Burnet SH, Cianci-Gaskill JA, Domis LNDS, Elfferich I, Ger KA, Grossart HPF, Ibelings BW, Ionescu D, Kouhanestani ZM, Mauch J, McElarney YR, Nava V, North RL, Ogashawara I, Paule-Mercado MCA, Soria-Píriz S, Sun X, Trout-Haney JV, Weyhenmeyer GA, Yokota K, Zhan Q. What makes a cyanobacterial bloom disappear? A review of the abiotic and biotic cyanobacterial bloom loss factors. HARMFUL ALGAE 2024; 133:102599. [PMID: 38485445 DOI: 10.1016/j.hal.2024.102599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 01/31/2024] [Accepted: 02/05/2024] [Indexed: 03/19/2024]
Abstract
Cyanobacterial blooms present substantial challenges to managers and threaten ecological and public health. Although the majority of cyanobacterial bloom research and management focuses on factors that control bloom initiation, duration, toxicity, and geographical extent, relatively little research focuses on the role of loss processes in blooms and how these processes are regulated. Here, we define a loss process in terms of population dynamics as any process that removes cells from a population, thereby decelerating or reducing the development and extent of blooms. We review abiotic (e.g., hydraulic flushing and oxidative stress/UV light) and biotic factors (e.g., allelopathic compounds, infections, grazing, and resting cells/programmed cell death) known to govern bloom loss. We found that the dominant loss processes depend on several system specific factors including cyanobacterial genera-specific traits, in situ physicochemical conditions, and the microbial, phytoplankton, and consumer community composition. We also address loss processes in the context of bloom management and discuss perspectives and challenges in predicting how a changing climate may directly and indirectly affect loss processes on blooms. A deeper understanding of bloom loss processes and their underlying mechanisms may help to mitigate the negative consequences of cyanobacterial blooms and improve current management strategies.
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Affiliation(s)
- Ted D Harris
- Kansas Biological Survey and Center for Ecological Research, University of Kansas, 2101 Constant Ave., Lawrence, KS, 66047
| | - Kaitlin L Reinl
- Lake Superior National Estuarine Research Reserve, University of Wisconsin - Madison Division of Extension, 14 Marina Dr, Superior, WI 54880
| | - Marzi Azarderakhsh
- Department of Construction and Civil Engineering, New York City College of Technology, 300 Jay Street, New York, NY 11201
| | - Stella A Berger
- Department of Plankton and Microbial Ecology, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Zur alten Fischerhütte 2, 16775 Stechlin, Germany
| | - Manuel Castro Berman
- Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180 and Darrin Freshwater Institute, Rensselaer Polytechnic Institute, Bolton Landing, NY, 12814
| | - Mina Bizic
- Department of Plankton and Microbial Ecology, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Zur alten Fischerhütte 2, 16775 Stechlin, Germany
| | - Ruchi Bhattacharya
- Department of Biological, Geological & Environmental Sciences, Cleveland State University, Cleveland, OH 44115
| | - Sarah H Burnet
- University of Idaho, Fish and Wildlife Sciences, Moscow, ID, USA, 83844
| | - Jacob A Cianci-Gaskill
- Old Woman Creek National Estuarine Research Reserve, Ohio Department of Natural Resources, 2514 Cleveland Rd East, Huron, OH 44839
| | - Lisette N de Senerpont Domis
- Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6708 PB Wageningen, The Netherlands; Department of Water Resources and Pervasive Systems Group, faculty of EEMCS and ITC, University of Twente, The Netherlands
| | - Inge Elfferich
- Cardiff University, Earth and Environmental Sciences, Main Building, Park Place CF10 3AT, Cardiff, UK
| | - K Ali Ger
- Department of Ecology, Center for Biosciences, Universidade Federal do Rio Grande do Norte, R. das Biociencias, Lagoa Nova, Natal, RN, 59078-970, Brazil
| | - Hans-Peter F Grossart
- Department of Plankton and Microbial Ecology, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Zur alten Fischerhütte 2, 16775 Stechlin, Germany; Potsdam University, Institute of Biochemistry and Biology, Maulbeeralle 2, 14469 Potsdam, Germany
| | - Bas W Ibelings
- Department F.-A. Forel for Environmental and Aquatic Sciences, University of Geneva, 66 Blvd Carl Vogt, 1205, Geneva, Switzerland
| | - Danny Ionescu
- Department of Plankton and Microbial Ecology, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Zur alten Fischerhütte 2, 16775 Stechlin, Germany
| | - Zohreh Mazaheri Kouhanestani
- School of Natural Resources, University of Missouri-Columbia, Anheuser-Busch Natural Resources Building, Columbia, MO, 65211-7220
| | - Jonas Mauch
- Department of Community and Ecosystem Ecology, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Müggelseedamm 301, 12587 Berlin, Germany
| | - Yvonne R McElarney
- Fisheries and Aquatic Ecosystems, Agri-Food and Biosciences Institute, Belfast, Northern Ireland
| | - Veronica Nava
- Department of Earth and Environmental Sciences, University of Milano-Bicocca, Piazza della Scienza 1, 20126 Milano, MI, Italy.
| | - Rebecca L North
- School of Natural Resources, University of Missouri-Columbia, Anheuser-Busch Natural Resources Building, Columbia, MO, 65211-7220
| | - Igor Ogashawara
- Department of Plankton and Microbial Ecology, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Zur alten Fischerhütte 2, 16775 Stechlin, Germany
| | - Ma Cristina A Paule-Mercado
- Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, Na Sádkách 7, České Budějovice 370 05, Czech Republic
| | - Sara Soria-Píriz
- Département des sciences biologiques, Université du Québec à Montréal, 141 Av. du Président-Kennedy, Montréal, QC H2 × 1Y4, Montréal, QC, Canada
| | - Xinyu Sun
- Department of Fisheries and Wildlife, Michigan State University, East Lansing, MI 48824, USA
| | | | - Gesa A Weyhenmeyer
- Department of Ecology and Genetics/Limnology, Uppsala University, Norbyvägen 18D, 75236 Uppsala, Sweden
| | - Kiyoko Yokota
- Biology Department, State University of New York at Oneonta, Oneonta, NY 13820, USA
| | - Qing Zhan
- Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6708 PB Wageningen, The Netherlands
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Khot V, Strous M, Dong X, Kiesser AK. Viral diversity and dynamics and CRISPR-Cas-mediated immunity in a robust alkaliphilic cyanobacterial consortium. Microbiol Spectr 2023; 11:e0221723. [PMID: 37819096 PMCID: PMC10715143 DOI: 10.1128/spectrum.02217-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 08/25/2023] [Indexed: 10/13/2023] Open
Abstract
IMPORTANCE Biotechnology applications utilizing the function of microbial communities have become increasingly important solutions as we strive for sustainable applications. Although viral infections are known to have a significant impact on microbial turnover and nutrient cycling, viral dynamics have remained largely overlooked in these engineered communities. Predatory perturbations to the functional stability of these microbial biotechnology applications must be investigated in order to design more robust applications. In this study, we closely examine virus-microbe dynamics in a model microbial community used in a biotechnology application. Our findings suggest that viral dynamics change significantly with environmental conditions and that microbial immunity may play an important role in maintaining functional stability. We present this study as a comprehensive template for other researchers interested in exploring predatory dynamics in engineered microbial communities.
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Affiliation(s)
- Varada Khot
- Department of Geoscience, University of Calgary, Calgary, Alberta, Canada
| | - Marc Strous
- Department of Geoscience, University of Calgary, Calgary, Alberta, Canada
| | - Xiaoli Dong
- Department of Geoscience, University of Calgary, Calgary, Alberta, Canada
- Public Health Laboratory, Alberta Precision Laboratories, Foothills Medical Centre, Calgary, Alberta, Canada
| | - Alyse K. Kiesser
- School of Engineering, University of British Columbia Okanagan, Kelowna, British Columbia, Canada
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3
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Cissell EC, McCoy SJ. Viral association with cyanobacterial mat community mortality. Ecology 2023; 104:e4131. [PMID: 37386729 DOI: 10.1002/ecy.4131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 06/01/2023] [Accepted: 06/14/2023] [Indexed: 07/01/2023]
Affiliation(s)
- Ethan C Cissell
- Department of Biology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
| | - Sophie J McCoy
- Department of Biology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
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To Die or Not to Die—Regulated Cell Death and Survival in Cyanobacteria. Microorganisms 2022; 10:microorganisms10081657. [PMID: 36014075 PMCID: PMC9415839 DOI: 10.3390/microorganisms10081657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Revised: 08/06/2022] [Accepted: 08/12/2022] [Indexed: 11/24/2022] Open
Abstract
Regulated cell death (RCD) is central to the development, integrity, and functionality of multicellular organisms. In the last decade, evidence has accumulated that RCD is a universal phenomenon in all life domains. Cyanobacteria are of specific interest due to their importance in aquatic and terrestrial habitats and their role as primary producers in global nutrient cycling. Current knowledge on cyanobacterial RCD is based mainly on biochemical and morphological observations, often by methods directly transferred from vertebrate research and with limited understanding of the molecular genetic basis. However, the metabolism of different cyanobacteria groups relies on photosynthesis and nitrogen fixation, whereas mitochondria are the central executioner of cell death in vertebrates. Moreover, cyanobacteria chosen as biological models in RCD studies are mainly colonial or filamentous multicellular organisms. On the other hand, unicellular cyanobacteria have regulated programs of cellular survival (RCS) such as chlorosis and post-chlorosis resuscitation. The co-existence of different genetically regulated programs in cyanobacterial populations may have been a top engine in life diversification. Development of cyanobacteria-specific methods for identification and characterization of RCD and wider use of single-cell analysis combined with intelligent image-based cell sorting and metagenomics would shed more light on the underlying molecular mechanisms and help us to address the complex colonial interactions during these events. In this review, we focus on the functional implications of RCD in cyanobacterial communities.
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Du K, Yang F, Zhang JT, Yu RC, Deng Z, Li WF, Chen Y, Li Q, Zhou CZ. Comparative genomic analysis of five freshwater cyanophages and reference-guided metagenomic data mining. MICROBIOME 2022; 10:128. [PMID: 35974417 PMCID: PMC9382816 DOI: 10.1186/s40168-022-01324-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Accepted: 07/06/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND As important producers using photosynthesis on Earth, cyanobacteria contribute to the oxygenation of atmosphere and the primary production of biosphere. However, due to the eutrophication of urban waterbodies and global warming, uncontrollable growth of cyanobacteria usually leads to the seasonal outbreak of cyanobacterial blooms. Cyanophages, a group of viruses that specifically infect and lyse cyanobacteria, are considered as potential environment-friendly agents to control the harmful blooms. Compared to the marine counterparts, only a few freshwater cyanophages have been isolated and genome sequenced to date, largely limiting their characterizations and applications. RESULTS Here, we isolated five freshwater cyanophages varying in tail morphology, termed Pam1~Pam5, all of which infect the cyanobacterium Pseudanabaena mucicola Chao 1806 that was isolated from the bloom-suffering Lake Chaohu in Anhui, China. The whole-genome sequencing showed that cyanophages Pam1~Pam5 all contain a dsDNA genome, varying in size from 36 to 142 Kb. Phylogenetic analyses suggested that Pam1~Pam5 possess different DNA packaging mechanisms and are evolutionarily distinct from each other. Notably, Pam1 and Pam5 have lysogeny-associated gene clusters, whereas Pam2 possesses 9 punctuated DNA segments identical to the CRISPR spacers in the host genome. Metagenomic data-based calculation of the relative abundance of Pam1~Pam5 at the Nanfei estuary towards the Lake Chaohu revealed that the short-tailed Pam1 and Pam5 account for the majority of the five cyanophages. Moreover, comparative analyses of the reference genomes of Pam1~Pam5 and previously reported cyanophages enabled us to identify three circular and seven linear contigs of virtual freshwater cyanophages from the metagenomic data of the Lake Chaohu. CONCLUSIONS We propose a high-throughput strategy to systematically identify cyanophages based on the currently available metagenomic data and the very limited reference genomes of experimentally isolated cyanophages. This strategy could be applied to mine the complete or partial genomes of unculturable bacteriophages and viruses. Transformation of the synthesized whole genomes of these virtual phages/viruses to proper hosts will enable the rescue of bona fide viral particles and eventually enrich the library of microorganisms that exist on Earth. Video abstract.
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Affiliation(s)
- Kang Du
- School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China
| | - Feng Yang
- School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China
| | - Jun-Tao Zhang
- School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China
| | - Rong-Cheng Yu
- School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China
| | - Ziqing Deng
- BGI-Shenzhen, Shenzhen, 518083, China
- BGI-Beijing, BGI-Shenzhen, Beijing, 100101, China
| | - Wei-Fang Li
- School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China
| | - Yuxing Chen
- School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China
| | - Qiong Li
- School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China.
| | - Cong-Zhao Zhou
- School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China.
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Voigt E, Rall BC, Chatzinotas A, Brose U, Rosenbaum B. Phage strategies facilitate bacterial coexistence under environmental variability. PeerJ 2021; 9:e12194. [PMID: 34760346 PMCID: PMC8572521 DOI: 10.7717/peerj.12194] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Accepted: 08/31/2021] [Indexed: 12/14/2022] Open
Abstract
Bacterial communities are often exposed to temporal variations in resource availability, which exceed bacterial generation times and thereby affect bacterial coexistence. Bacterial population dynamics are also shaped by bacteriophages, which are a main cause of bacterial mortality. Several strategies are proposed in the literature to describe infections by phages, such as "Killing the Winner", "Piggyback the loser" (PtL) or "Piggyback the Winner" (PtW). The two temperate phage strategies PtL and PtW are defined by a change from lytic to lysogenic infection when the host density changes, from high to low or from low to high, respectively. To date, the occurrence of different phage strategies and their response to environmental variability is poorly understood. In our study, we developed a microbial trophic network model using ordinary differential equations (ODEs) and performed 'in silico' experiments. To model the switch from the lysogenic to the lytic cycle, we modified the lysis rate of infected bacteria and their growth was turned on or off using a density-dependent switching point. We addressed whether and how the different phage strategies facilitate bacteria coexistence competing for limiting resources. We also studied the impact of a fluctuating resource inflow to evaluate the response of the different phage strategies to environmental variability. Our results show that the viral shunt (i.e. nutrient release after bacterial lysis) leads to an enrichment of the system. This enrichment enables bacterial coexistence at lower resource concentrations. We were able to show that an established, purely lytic model leads to stable bacterial coexistence despite fluctuating resources. Both temperate phage models differ in their coexistence patterns. The model of PtW yields stable bacterial coexistence at a limited range of resource supply and is most sensitive to resource fluctuations. Interestingly, the purely lytic phage strategy and PtW both result in stable bacteria coexistence at oligotrophic conditions. The PtL model facilitates stable bacterial coexistence over a large range of stable and fluctuating resource inflow. An increase in bacterial growth rate results in a higher resilience to resource variability for the PtL and the lytic infection model. We propose that both temperate phage strategies represent different mechanisms of phages coping with environmental variability. Our study demonstrates how phage strategies can maintain bacterial coexistence in constant and fluctuating environments.
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Affiliation(s)
- Esther Voigt
- German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany.,Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
| | - Björn C Rall
- German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany.,Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
| | - Antonis Chatzinotas
- German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany.,Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.,Institute of Biology, Leipzig University, Leipzig, Germany
| | - Ulrich Brose
- German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany.,Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
| | - Benjamin Rosenbaum
- German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany.,Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
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7
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Weisbrod B, Riehle E, Helmer M, Martin-Creuzburg D, Dietrich DR. Can toxin warfare against fungal parasitism influence short-term Dolichospermum bloom dynamics? - A field observation. HARMFUL ALGAE 2020; 99:101915. [PMID: 33218440 DOI: 10.1016/j.hal.2020.101915] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 08/20/2020] [Accepted: 10/04/2020] [Indexed: 06/11/2023]
Abstract
Cyanobacterial blooms often consist of numerous co-existing cyanobacterial species, with predominant taxa dynamically varying intra-annually. Parasitism by fungi (chytrids) has come into focus as an important factor driving short-term bloom dynamics. Using microscopic analysis, Illumina sequencing and cyanobacterial toxin analyses, we monitored the seasonal succession of Dolichospermum blooms in a reservoir along with environmental parameters. We identified two consecutive Dolichospermum blooms that were characterized by a straight and a coiled morphotype, separated by a complete bloom collapse. Phylotyping provided evidence for three putative Dolichospermum amplicon sequence variants (ASVs); i.e. Dolichospermum1 & 2 in the first bloom (straight filaments) and Dolichospermum3 in the second bloom (coiled filaments). Morphotype succession as well as total filament concentration did not correlate with any of the measured environmental parameters. Fungal parasitism by the chytrid Rhizosiphon crassum occurred in straight Dolichospermum filaments only. Coiled filaments showed no infection despite ambient presence of chytrids, deduced from fungal ASVs, throughout the entire observation period. Toxin concentrations (microcystins (MCs) and anabaenopeptins) correlated significantly with the abundance of the straight Dolichospermum morphotype. Enhanced cyanotoxin biosynthesis in the straight Dolichospermum morphotype, interpreted as a defensive reaction to fungal parasitism, appeared to come at the expense of lowered competitiveness with the co-occurring coiled morphotype. Our findings support the hypothesis that selective parasitism by chytrids is an important factor driving short-term morphotype and toxin dynamics within cyanobacterial blooms.
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Affiliation(s)
- B Weisbrod
- Human and Environmental Toxicology, University of Konstanz, Universitätsstrasse 10, 78464 Konstanz, Germany.
| | - E Riehle
- Human and Environmental Toxicology, University of Konstanz, Universitätsstrasse 10, 78464 Konstanz, Germany
| | - M Helmer
- Limnological Institute, University of Konstanz, Mainaustrasse 252, 78464 Konstanz, Germany
| | - D Martin-Creuzburg
- Limnological Institute, University of Konstanz, Mainaustrasse 252, 78464 Konstanz, Germany
| | - D R Dietrich
- Human and Environmental Toxicology, University of Konstanz, Universitätsstrasse 10, 78464 Konstanz, Germany
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Kuznecova J, Šulčius S, Vogts A, Voss M, Jürgens K, Šimoliūnas E. Nitrogen Flow in Diazotrophic Cyanobacterium Aphanizomenon flos-aquae Is Altered by Cyanophage Infection. Front Microbiol 2020; 11:2010. [PMID: 32973727 PMCID: PMC7466765 DOI: 10.3389/fmicb.2020.02010] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Accepted: 07/29/2020] [Indexed: 12/03/2022] Open
Abstract
Viruses can significantly influence cyanobacteria population dynamics and activity, and through this the biogeochemical cycling of major nutrients. However, surprisingly little attention has been given to understand how viral infections alter the ability of diazotrophic cyanobacteria for atmospheric nitrogen fixation and its release to the environment. This study addressed the importance of cyanophages for net 15N2 assimilation rate, expression of nitrogenase reductase gene (nifH) and changes in nitrogen enrichment (15N/14N) in the diazotrophic cyanobacterium Aphanizomenon flos-aquae during infection by the cyanophage vB_AphaS-CL131. We found that while the growth of A. flos-aquae was inhibited by cyanophage addition (decreased from 0.02 h–1 to 0.002 h–1), there were no significant differences in nitrogen fixation rates (control: 22.7 × 10–7 nmol N heterocyte–1; infected: 23.9 × 10–7 nmol N heterocyte–1) and nifH expression level (control: 0.6–1.6 transcripts heterocyte–1; infected: 0.7–1.1 transcripts heterocyte–1) between the infected and control A. flos-aquae cultures. This implies that cyanophage genome replication and progeny production within the vegetative cells does not interfere with the N2 fixation reactions in the heterocytes of these cyanobacteria. However, higher 15N enrichment at the poles of heterocytes of the infected A. flos-aquae, revealed by NanoSIMS analysis indicates the accumulation of fixed nitrogen in response to cyanophage addition. This suggests reduced nitrogen transport to vegetative cells and the alterations in the flow of fixed nitrogen within the filaments. In addition, we found that cyanophage lysis resulted in a substantial release of ammonium into culture medium. Cyanophage infection seems to substantially redirect N flow from cyanobacterial biomass to the production of N storage compounds and N release.
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Affiliation(s)
- Jolita Kuznecova
- Laboratory of Algology and Microbial Ecology, Nature Research Centre, Vilnius, Lithuania
| | - Sigitas Šulčius
- Laboratory of Algology and Microbial Ecology, Nature Research Centre, Vilnius, Lithuania
| | - Angela Vogts
- Section Biological Oceanography, Leibniz Institute for Baltic Sea Research, Warnemünde, Germany
| | - Maren Voss
- Section Biological Oceanography, Leibniz Institute for Baltic Sea Research, Warnemünde, Germany
| | - Klaus Jürgens
- Section Biological Oceanography, Leibniz Institute for Baltic Sea Research, Warnemünde, Germany
| | - Eugenijus Šimoliūnas
- Department of Molecular Microbiology and Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania
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Jassim SAA, Limoges RG. Impact of external forces on cyanophage-host interactions in aquatic ecosystems. World J Microbiol Biotechnol 2013; 29:1751-62. [PMID: 23619821 DOI: 10.1007/s11274-013-1358-5] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2012] [Accepted: 04/19/2013] [Indexed: 12/25/2022]
Abstract
Cyanobacterial (algal) blooms have by convention been attributed to the excessive level of nutrients from pollution and runoff, which promotes the rapid growth and multiplication of cyanobacteria or algae. The cyanophage (virus) is the natural predator of cyanobacteria (the host). The aim of this review is to unveil certain pressures that disrupt cyanophage-host interactions and the formation of cyanobacterial blooms. This review focuses principally on the impact of greenhouse gases, ozone depletion, solar ultraviolet radiation (SUR) and the role of recently discovered virophages, which coexist with and in turn are the natural predator of phages. The key findings are that the increase in SUR, the mutation of cyanophages and cyanobacteria, along with changing nutrient levels, have combined with virophages to impede cyanophage-host interactions and the resultant viral infection and killing of the cyanobacterial cell, which is a necessary step in controlling cyanobacterial blooms. Consider this a 'call to action' for researchers interested in corrective action aimed at evolving aquatic ecosystems.
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Affiliation(s)
- Sabah A A Jassim
- Applied Bio Research Inc., 455 Pelissier St., Windsor, ON, N9A 6Z9, Canada,
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Gurbuz F, Metcalf JS, Karahan AG, Codd GA. Analysis of dissolved microcystins in surface water samples from Kovada Lake, Turkey. THE SCIENCE OF THE TOTAL ENVIRONMENT 2009; 407:4038-4046. [PMID: 19395066 DOI: 10.1016/j.scitotenv.2009.02.039] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2008] [Revised: 02/23/2009] [Accepted: 02/25/2009] [Indexed: 05/27/2023]
Abstract
Dissolved (extracellular) microcystin (MC) concentrations were determined at 3 sampling stations on Lake Kovada, Turkey. The dominant species of cyanobacteria found in August and September of 2006 were Microcystis aeruginosa, Synechococcus sp., Phormidium limosum, Phormidium formosa and Planktothrix limnetica. MC concentrations in water were measured by ELISA and MC variants were examined by HPLC-PDA. Quantitative analysis by HPLC indicated that five MC variants (MC-LR, -RR, -LA, -LW, -LF) were identified in water samples from Kovada Lake. The maximum concentration of dissolved MC-LW was 98.9 microg l(-1) in October. MC-LR was only detected in May at a concentration of 0.5 microg l(-1). The cross reactivity of the antibody (MC10E7) to variants such as MC-LA MC-LW & MC-LF was low. Hence the results determined by ELISA were lower than those determined by HPLC in September and October samples due to differences in the specificity of the antibody to MC variants. Total extracellular MCs was quantified by ELISA and ranged from 0.73 to 48.5 microg MC-LR equivalents l(-1), which in some cases exceeded the WHO provisional Guideline Value for MC-LR in drinking water. This study confirms that the lakes of Turkey should be monitored for toxic cyanobacteria and for MCs to avoid or reduce the potential exposure of people to these health hazards.
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Affiliation(s)
- Fatma Gurbuz
- Department of Biological Sciences, Suleyman Demirel University, Isparta, Turkey.
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11
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Liu X, Kong S, Shi M, Fu L, Gao Y, An C. Genomic analysis of freshwater cyanophage Pf-WMP3 Infecting cyanobacterium Phormidium foveolarum: the conserved elements for a phage. MICROBIAL ECOLOGY 2008; 56:671-80. [PMID: 18443848 DOI: 10.1007/s00248-008-9386-7] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2007] [Revised: 02/17/2008] [Accepted: 02/20/2008] [Indexed: 05/14/2023]
Abstract
Cyanophages are ecologically abundant, genetically diverse in aquatic environments, and affect the population and evolutionary trajectories of their hosts. After reporting the cyanophage Pf-WMP4 genome (Liu et al. in Virology 366:28-39, 2007), we hereby present a related cyanophage, Pf-WMP3, which also infects the freshwater cyanobacterium Phormidium foveolarum. The Pf-WMP3 genome contains 43,249 bp with 234 bp direct terminal repeats. The overall genome organization and core genes of the two phages are comparable to those of the T7 supergroup phages. Compared with Pf-WMP4, cyanophage Pf-WMP3 has diverged extensively at the DNA level; however, they are closely related at the protein level and genome architecture. The left arm genes for the two phages, which mainly encode the DNA replication machinery, are not conserved in the gene order. Whereas the right arm genes of the two phages coding for structural proteins show high similarity in amino acid sequences and modular architecture, indicating that they have retained similar development strategies. The differences in similarity levels between the left and right arm genes suggest that the structural genes are the most conserved elements for a phage.
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Affiliation(s)
- Xinyao Liu
- National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing 100871, People's Republic of China.
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12
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Sedmak B, Carmeli S, Elersek T. "Non-toxic" cyclic peptides induce lysis of cyanobacteria-an effective cell population density control mechanism in cyanobacterial blooms. MICROBIAL ECOLOGY 2008; 56:201-209. [PMID: 18008101 DOI: 10.1007/s00248-007-9336-9] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2007] [Revised: 10/19/2007] [Accepted: 10/21/2007] [Indexed: 05/25/2023]
Abstract
The presence of planktopeptin BL1125, anabaenopeptin B and anabaenopeptin F, two types of "non-toxic" cyclic peptide produced in bloom forming cyanobacteria, can provoke lysis of different non-axenic Microcystis aeruginosa cell lines via the induction of virus-like particles. The resulting particles are also able to infect the axenic M. aeruginosa cell line without lytic effects. Nevertheless, the presence of "non-toxic" cyclic peptides of cyanobacterial origin can induce lysis of these previously infected cells. This effect implies that a possible role of these peptides in the natural environment is the control of cyanobacterial population density. Lysogenic cyanobacteria can consequently act as hot-spots that, in the presence of cyanobacterial cyclic peptides, release numerous infectious particles. The process can be self-augmented with the simultaneous release of additional cyclic peptides from the producing lysogens, starting a forest fire effect that ends in collapse of cyanobacterial blooms.
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Affiliation(s)
- B Sedmak
- Department of Genetic Toxicology and Cancer Biology, National Institute of Biology Ljubljana, Vecna pot 111, 1000, Ljubljana, Slovenia.
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13
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Tijdens M, Hoogveld HL, Kamst-van Agterveld MP, Simis SGH, Baudoux AC, Laanbroek HJ, Gons HJ. Population dynamics and diversity of viruses, bacteria and phytoplankton in a shallow eutrophic lake. MICROBIAL ECOLOGY 2008; 56:29-42. [PMID: 17924158 PMCID: PMC2440944 DOI: 10.1007/s00248-007-9321-3] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/08/2007] [Revised: 07/17/2007] [Accepted: 09/04/2007] [Indexed: 05/25/2023]
Abstract
We have studied the temporal variation in viral abundances and community assemblage in the eutrophic Lake Loosdrecht through epifluorescence microscopy and pulsed field gel electrophoresis (PFGE). The virioplankton community was a dynamic component of the aquatic community, with abundances ranging between 5.5 x 10(7) and 1.3 x 10(8) virus-like particles ml(-1) and viral genome sizes ranging between 30 and 200 kb. Both viral abundances and community composition followed a distinct seasonal cycle, with high viral abundances observed during spring and summer. Due to the selective and parasitic nature of viral infection, it was expected that viral and host community dynamics would covary both in abundances and community composition. The temporal dynamics of the bacterial and cyanobacterial communities, as potential viral hosts, were studied in addition to a range of environmental parameters to relate these to viral community dynamics. Cyanobacterial and bacterial communities were studied applying epifluorescence microscopy, flow cytometry, and denaturing gradient gel electrophoresis (DGGE). Both bacterial and cyanobacterial communities followed a clear seasonal cycle. Contrary to expectations, viral abundances were neither correlated to abundances of the most dominant plankton groups in Lake Loosdrecht, the bacteria and the filamentous cyanobacteria, nor could we detect a correlation between the assemblage of viral and bacterial or cyanobacterial communities during the overall period. Only during short periods of strong fluctuations in microbial communities could we detect viral community assemblages to covary with cyanobacterial and bacterial communities. Methods with a higher specificity and resolution are probably needed to detect the more subtle virus-host interactions. Viral abundances did however relate to cyanobacterial community assemblage and showed a significant positive correlation to Chl-a as well as prochlorophytes, suggesting that a significant proportion of the viruses in Lake Loosdrecht may be phytoplankton and more specific cyanobacterial viruses. Temporal changes in bacterial abundances were significantly related to viral community assemblage, and vice versa, suggesting an interaction between viral and bacterial communities in Lake Loosdrecht.
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Affiliation(s)
- Marjolijn Tijdens
- Department of Microbial Wetland Ecology, Centre for Limnology, Netherlands Institute of Ecology NIOO-KNAW, Rijksstraatweg 6, AC, Nieuwersluis, The Netherlands.
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14
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Liu X, Shi M, Kong S, Gao Y, An C. Cyanophage Pf-WMP4, a T7-like phage infecting the freshwater cyanobacterium Phormidium foveolarum: complete genome sequence and DNA translocation. Virology 2007; 366:28-39. [PMID: 17499329 DOI: 10.1016/j.virol.2007.04.019] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2006] [Revised: 04/05/2007] [Accepted: 04/10/2007] [Indexed: 11/27/2022]
Abstract
We report the complete 40,938-bp genome sequence of a cyanophage, Pf-WMP4, which infects the freshwater cyanobacterium Phormidium foveolarum Gom. Nine of the forty-five potential open reading frames in the Pf-WMP4 genome share similarities with the genes found in T7-like phages. Using in vitro transcription, we found that seven promoters at the leftmost end of the genome can be recognized by the host RNA polymerase. By blocking transcriptional and translational inhibitors, we found that Pf-WMP4 DNA translocation, with an average translocation rate of 19.8+/-2.7 bp s(-1) at 28 degrees C, requires both host transcription and protein synthesis of an unknown factor. Therefore the mechanism of cyanophage Pf-WMP4 DNA injection may be driven both by a T7-like internalization mechanism as well as an additional unknown mechanism requiring de novo protein synthesis. Our analysis of the Pf-WMP4 genome sheds new light on the translocation strategies and evolutionary traces of phages belonging to the T7 supergroup.
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Affiliation(s)
- Xinyao Liu
- National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing 100871, PR China.
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15
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Zwart G, Kamst-van Agterveld MP, van der Werff-Staverman I, Hagen F, Hoogveld HL, Gons HJ. Molecular characterization of cyanobacterial diversity in a shallow eutrophic lake. Environ Microbiol 2005; 7:365-77. [PMID: 15683397 DOI: 10.1111/j.1462-2920.2005.00715.x] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
We have studied the diversity of pelagic cyanobacteria in Lake Loosdrecht, The Netherlands, through recovery and analysis of small subunit ribosomal RNA gene sequences from lake samples and cyanobacterial isolates. We used an adapted protocol for specific amplification of cyanobacterial rDNA for denaturing gradient gel electrophoresis (DGGE) analysis. This protocol enabled direct comparison of cyanobacterial community profiles with overall bacterial profiles. The theoretical amplification specificity of the primers was supported by sequence analysis of DNA from excised DGGE bands. Sequences recovered from these bands, in addition to sequences obtained by polymerase chain reaction (PCR) and cloning from lake DNA as well as from cyanobacterial isolates from the lake, revealed a diverse consortium of cyanobacteria, among which are representatives of the genera Aphanizomenon, Planktothrix, Microcystis and Synechococcus. One numerically important and persistent cyanobacterium in the lake, Prochlorothrix hollandica, appeared to co-occur with an unknown but related species. However, the lake is dominated by filamentous species that originally have been termed 'Oscillatoria limnetica-like'. We show that this is a group of several related cyanobacteria, co-occurring in the lake, which belong to the Limnothrix/Pseudanabaena group. The available variation among the coexisting strains of this group can explain the persistent dominance of the group under severe viral pressure.
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Affiliation(s)
- Gabriel Zwart
- Centre for Limnology, NIOO-KNAW Netherlands Institute of Ecology, Rijksstraatweg 6, 3631 AC Nieuwersluis, The Netherlands.
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