Analysis of macroinvertebrate assemblages in relation to environmental gradients among lotic habitats of California's Central Valley

Long term bioassessment multiple stressors study in a residential California stream

The relationship of various benthic metrics to physical habitat metrics, pyrethroids, metals and sediment parameters was evaluated for a 10 year data set in Pleasant Grove Creek (Roseville, California) using univariate linear models, stepwise multiple regressions, and canonical correlation analysis. In general, total physical habitat scores in this residential stream were considered to be marginal to suboptimal. The most dominant benthic taxa were generally considered to be tolerant of environmental stressors and the benthic communities were rated as impaired based on a benthic index. Potentially toxic sediment concentrations of cadmium, chromium, copper, nickel and zinc were reported at various sites based on a comparison with existing threshold effect levels. The sum of pyrethroid Toxics Units (TUs) indicated that 10 of 21 sites based on a sensitive Hyalella laboratory toxicity test had TUs greater than one thus suggesting toxicity at various sites. In summary, the effects of the physical habitat, as reflected by certain habitat metrics that were indicative of stream-flow, hydrology, habitat diversity, and substrate quality overshadowed any apparent effects of pyrethroids and metals on shaping resident benthic communities when all environmental variables were considered in multivariate analyses.

Quantifying the extent of human disturbance activities and anthropogenic stressors in wetlands across the conterminous United States: results from the National Wetland Condition Assessment

In 2011, the U.S. Environmental Protection Agency conducted the National Wetland Condition Assessment (NWCA) as part of the National Aquatic Resource Survey (NARS) program to determine the condition of wetlands across the 48 contiguous states of the United States (US). Sites were selected using a generalized random tessellated stratified (GRTS) probability design. We quantified the types, extent, and magnitude of human activities as indicators of potential stress on a sample of 1138 wetland sites representing a target population of 251,546 km² of wetlands in the US. We used field observations of the presence and proximity of more than 50 pre-determined types of human activity to define two types of indices that quantify human influences on wetlands. We grouped these observations into five types of human activity (classes) and summed them within and across these classes to define five metrics and an overall Human Disturbance Activity Index (HDAI). We calculated six Anthropogenic Stress Indices (ASIs) by summing human disturbance activity observations within stressor categories according to their expected effect on each of six aspects of wetland condition. Based on repeat-visit data, the precision of these metrics and indices was sufficient for regional and national assessments. Among the six categories of stress assessed nationally, the percentage of wetland area having ASI levels indicating high stress levels ranged from 10% due to filling/erosional activities to 27% due to vegetation removal activities. The proportion of wetland area with no signs of human disturbance activity (HDAI = 0) within a 140-m diameter area varied widely among the different wetland ecoregions/types we assessed. No visible human disturbance activity was evident in 70% of estuarine wetlands, but among non-estuarine wetlands, only 8% of the wetland area in the West, 15% of the Interior Plains, 22% of the Coastal Plains, and 36% of the Eastern Mountains and Upper Midwest lacked visible evidence of disturbance. The woody wetlands of the West were the most highly stressed reporting group, with more than 75% of their wetland area subject to high levels of ditching, hardening, and vegetation removal. The NWCA offers a unique opportunity to quantify the type, intensity, and extent of human activities in and around wetlands and to assess their likely stress on wetland ecological functions, physical integrity, and overall condition at regional and continental scales.

Impact of metals on macroinvertebrate assemblages in the Forgotten Stretch of the Rio Grande

The objective of this study was to examine how changes in the benthic macroinvertebrate community structure and a variety of abiotic variables, such as conductivity and sediment metal concentrations, are modified along the Forgotten River stretch of the Rio Grande. This stretch receives industrial effluent, raw sewage, and agricultural return flow from the El Paso (TX, USA)-Ciudad Juárez (CHI, Mexico) metroplex and then flows relatively undisturbed for 320 km before its next significant input. The high degree of use, followed by the 320-km undisturbed stretch, makes the Forgotten River a unique study site to examine downstream attenuation of contaminants and other abiotic variables to determine their potential effects on macroinvertebrates. Five different sites along the Forgotten Stretch were sampled over a 2-year period. Metal concentrations were low throughout the stretch and were predominantly correlated to percent sediment organic matter rather than explained spatially. Several sensitive invertebrate species, such as Leptophlebiidae, increased in relative abundance downstream, whereas the percentage of tolerant invertebrates decreased. Nonmetric multidimensional scaling separated the macroinvertebrate communities upstream from those downstream, with the more sensitive species being found predominantly downstream and more tolerant taxa associated upstream. Additionally, there was a distinct seasonal gradient to the community. The most important drivers of the community assemblage appear to be distance downstream and seasonality, as well as water conductivity and concentrations of sediment cadmium, which was the only metal that exceeded protective criteria. This study did not provide evidence of the downstream attenuation of heavy metals in the sediments in the Forgotten Stretch; however, downstream changes in macroinvertebrates toward more sensitive taxa suggests that other, unmeasured contaminants might be affecting biological communities in this isolated stretch of an international waterway.

Quantifying structural physical habitat attributes using LIDAR and hyperspectral imagery

Structural physical habitat attributes include indices of stream size, channel gradient, substrate size, habitat complexity, and riparian vegetation cover and structure. The Environmental Monitoring and Assessment Program (EMAP) is designed to assess the status and trends of ecological resources at different scales. High-resolution remote sensing provides unique capabilities in detecting a variety of features and indicators of environmental health and condition. LIDAR is an airborne scanning laser system that provides data on topography, channel dimensions (width, depth), slope, channel complexity (residual pools, volume, morphometric complexity, hydraulic roughness), riparian vegetation (height and density), dimensions of riparian zone, anthropogenic alterations and disturbances, and channel and riparian interaction. Hyperspectral aerial imagery offers the advantage of high spectral and spatial resolution allowing for the detection and identification of riparian vegetation and natural and anthropogenic features at a resolution not possible with satellite imagery. When combined, or fused, these technologies comprise a powerful geospatial data set for assessing and monitoring lentic and lotic environmental characteristics and condition.

The relative influence of geographic location and reach-scale habitat on benthic invertebrate assemblages in six ecoregions

The objective of this study was to determine the relative influence of reach-specific habitat variables and geographic location on benthic invertebrate assemblages within six ecoregions across the Western USA. This study included 417 sites from six ecoregions. A total of 301 taxa were collected with the highest richness associated with ecoregions dominated by streams with coarse substrate (19-29 taxa per site). Lowest richness (seven to eight taxa per site) was associated with ecoregions dominated by fine-grain substrate. Principle component analysis (PCA) on reach-scale habitat separated the six ecoregions into those in high-gradient mountainous areas (Coast Range, Cascades, and Southern Rockies) and those in lower-gradient ecoregions (Central Great Plains and Central California Valley). Nonmetric multidimensional scaling (NMS) models performed best in ecoregions dominated by coarse-grain substrate and high taxa richness, along with coarse-grain substrates sites combined from multiple ecoregions regardless of location. In contrast, ecoregions or site combinations dominated by fine-grain substrate had poor model performance (high stress). Four NMS models showed that geographic location (i.e. latitude and longitude) was important for: (1) all ecoregions combined, (2) all sites dominated by coarse-grain sub strate combined, (3) Cascades Ecoregion, and (4) Columbia Ecoregion. Local factors (i.e. substrate or water temperature) seem to be overriding factors controlling invertebrate composition across the West, regardless of geographic location.

Biological integrity in mid-atlantic coastal plains headwater streams

The objective of this study was to assess the applicability of using landscape variables in conjunction with water quality and benthic data to efficiently estimate stream condition of select headwater streams in the Mid-Atlantic Coastal Plains. Eighty-two streams with riffle sites were selected from eight-two independent watersheds across the region for sampling and analyses. Clustering of the watersheds by landscape resulted in three distinct groups (forest, crop, and urban) which coincided with watersheds dominant land cover or use. We used non-parametric analyses to test differences in benthos and water chemistry between groups, and used regression analyses to evaluate responses of benthic communities to water chemistry within each of the landscape groups. We found that typical water chemistry measures associated with urban runoff such as specific conductance and dissolved chloride were significantly higher in the urban group. In the crop group, we found variables commonly associated with farming such as nutrients and pesticides significantly greater than in the other two groups. Regression analyses demonstrated that the numbers of tolerant and facultative macroinvertebrates increased significantly in forested watersheds with small shifts in pollutants, while in human use dominated watersheds the intolerant macroinvertebrates were more sensitive to shifts in chemicals present at lower concentrations. The results from this study suggest that landscape based clustering can be used to link upstream landscape characteristics, water chemistry and biotic integrity in order to assess stream condition and likely cause of degradation without the use of reference sites. Notice: Although this work was reviewed by EPA and approved for publication, it may not necessarily reflect official Agency policy.

Historical assessments and comparisons of benthic communities and physical habitat in two agricultural streams in California's San Joaquin watershed

This study was designed to assess trends in physical habitat and benthic communities (macroinvertebrates) annually in two agricultural streams (Del Puerto Creek and Salt Slough) in California's San Joaquin Valley from 2001 to 2005, determine the relationship between benthic communities and both water quality and physical habitat from both streams over the 5-year period, and compare benthic communities and physical habitat in both streams from 2001 to 2005. Physical habitat, measured with 10 metrics and a total score, was reported to be fairly stable over 5 years in Del Puerto Creek but somewhat variable in Salt Slough. Benthic communities, measured with 18 metrics, were reported to be marginally variable over time in Del Puerto Creek but fairly stable in Salt Slough. Rank correlation analysis for both water bodies combined showed that channel alteration, embeddedness, riparian buffer, and velocity/depth/diversity were the most important physical habitat metrics influencing the various benthic metrics. Correlations of water quality parameters and benthic community metrics for both water bodies combined showed that turbidity, dissolved oxygen, and conductivity were the most important water quality parameters influencing the different benthic metrics. A comparison of physical habitat metrics (including total score) for both water bodies over the 5-year period showed that habitat metrics were more positive in Del Puerto Creek when compared to Salt Slough. A comparison of benthic metrics in both water bodies showed that approximately one-third of the metrics were significantly different between the two water bodies. Generally, the more positive benthic metric scores were reported in Del Puerto Creek, which suggests that the communities in this creek are more robust than Salt Slough.

Temporal and spatial assessment of water quality, physical habitat, and benthic communities in an impaired agricultural stream in California's San Joaquin Valley

The goal of this study was to characterize and discuss the relationships among water quality, physical habitat, and benthic community data collected annually over a three-year period (2000--2002) in an impaired agricultural stream (Orestimba Creek) in California's San Joaquin River watershed. Conductivity, pH, and turbidity were the most important water quality conditions influencing the various benthic metrics. Significantly higher flow conditions and lower dissolved oxygen values were reported in Orestimba Creek in 2001; increased turbidity conditions were reported in 2002. Channel alteration, riparian buffer, sediment deposition, and channel flow were the most important physical habitat metrics influencing the various benthic metrics. Higher total physical habitat scores were reported in 2001 when compared with 2002. The most dominant benthic taxa collected during all three years of sampling were oligochaetes and chironomids. Oligochaetes are found in stressful environments while chironomids can be either sensitive or tolerant to environmental stressors depending on the species. Populations of both daphnids and the exotic clam Corbicula were reported to increase over time. Both of these taxa are generally tolerant to most types of environmental degradation. The exception is that daphnids are highly sensitive to organophosphate insecticides. The % filterers increased over time, which suggests an increase in environmental disturbance. The % collectors decreased from 2000 to 2002, which suggests an improvement in environmental conditions. The presence of approximately 100 taxa in Orestimba Creek during each of the three years of sampling implies that benthic communities in this stream are fairly diverse, considering their ephemeral environment, but without a clear definition of benthic community expectations based on established referenc conditions it is unknown if this water body is actually impaired.