Occurrence of cellulose in Limnoria

Building on 150 Years of Knowledge: The Freshwater Isopod Asellus aquaticus as an Integrative Eco-Evolutionary Model System

Interactions between organisms and their environments are central to how biological diversity arises and how natural populations and ecosystems respond to environmental change. These interactions involve processes by which phenotypes are affected by or respond to external conditions (e.g., via phenotypic plasticity or natural selection) as well as processes by which organisms reciprocally interact with the environment (e.g., via eco-evolutionary feedbacks). Organism-environment interactions can be highly dynamic and operate on different hierarchical levels, from genes and phenotypes to populations, communities, and ecosystems. Therefore, the study of organism-environment interactions requires integrative approaches and model systems that are suitable for studies across different hierarchical levels. Here, we introduce the freshwater isopod Asellus aquaticus, a keystone species and an emerging invertebrate model system, as a prime candidate to address fundamental questions in ecology and evolution, and the interfaces therein. We review relevant fields of research that have used A. aquaticus and draft a set of specific scientific questions that can be answered using this species. Specifically, we propose that studies on A. aquaticus can help understanding (i) the influence of host-microbiome interactions on organismal and ecosystem function, (ii) the relevance of biotic interactions in ecosystem processes, and (iii) how ecological conditions and evolutionary forces facilitate phenotypic diversification.

Isopod holobionts as promising models for lignocellulose degradation

BACKGROUND

Isopods have colonized all environments, partly thanks to their ability to decompose the organic matter. Their enzymatic repertoire, as well as the one of their associated microbiota, has contributed to their colonization success. Together, these holobionts have evolved several interesting life history traits to degrade the plant cell walls, mainly composed of lignocellulose. It has been shown that terrestrial isopods achieve lignocellulose degradation thanks to numerous and diverse CAZymes provided by both the host and its microbiota. Nevertheless, the strategies for lignocellulose degradation seem more diversified in isopods, in particular in aquatic species which are the least studied. Isopods could be an interesting source of valuable enzymes for biotechnological industries of biomass conversion.

RESULTS

To provide new features on the lignocellulose degradation in isopod holobionts, shotgun sequencing of 36 metagenomes of digestive and non-digestive tissues was performed from several populations of four aquatic and terrestrial isopod species. Combined to the 15 metagenomes of an additional species from our previous study, as well as the host transcriptomes, this large dataset allowed us to identify the CAZymes in both the host and the associated microbial communities. Analyses revealed the dominance of Bacteroidetes and Proteobacteria in the five species, covering 36% and 56% of the total bacterial community, respectively. The identification of CAZymes and new enzymatic systems for lignocellulose degradation, such as PULs, cellulosomes and LPMOs, highlights the richness of the strategies used by the isopods and their associated microbiota.

CONCLUSIONS

Altogether, our results show that the isopod holobionts are promising models to study lignocellulose degradation. These models can provide new enzymes and relevant lignocellulose-degrading bacteria strains for the biotechnological industries of biomass conversion.

Absence of microorganisms in crustacean digestive tracts

Two marine and one terrestrial wood-boring isopod species and one wood-inhabiting amphipod species maintain a digestive tract free of microorganisms. Digestive tracts examined in toto with the scanning electron microscope were devoid of microorganisms. In contrast, the outer exoskeleton surfaces of these crustaceans support a dense bacterialflora. Observations of the hindgut of termites revealed a diverse gut microflora as expected.

Bacteria associated with the surface and gut of marine copepods

Little is known about the nature of bacteria associated with the surface and gut of marine copepods, either in laboratory-reared animals or in the natural environment. Nor is it known whether such animals possess a gut flora. The present report deals with studies of microorganisms isolated from healthy, laboratory-reared copepods of the species Acartia tonsa Dana, from several species of wild copepods collected from a marine or estuarine environment, and from laboratory dishes containing moribund copepods. Evidence for a unique gut flora in laboratory-reared animals is presented; the predominant bacteria were represented by the genus Vibrio. Other organisms such as Pseudomonas and Cytophaga were found less abundantly associated with the copepods and not specifically associated with the gut.

Nutrition in terrestrial isopods (Isopoda: Oniscidea): an evolutionary-ecological approach

The nutritional morphology, physiology and ecology of terrestrial isopods (Isopoda: Oniscidea) is significant in two respects. (1) Most oniscid isopods are truly terrestrial in terms of being totally independent of the aquatic environment. Thus, they have evolved adaptations to terrestrial food sources. (2) In many terrestrial ecosystems, isopods play an important role in decomposition processes through mechanical and chemical breakdown of plant litter and by enhancing microbial activity. While the latter aspect of nutrition is discussed only briefly in this review, I focus on the evolutionary ecology of feeding in terrestrial isopods. Due to their possessing chewing mouthparts, leaf litter is comminuted prior to being ingested, facilitating both enzymatic degradation during gut passage and microbial colonization of egested faeces. Digestion of food through endogenous enzymes produced in the caeca of the midgut glands (hepatopancreas) and through microbial enzymes, either ingested along with microbially colonized food or secreted by microbial endosymbionts, mainly takes place in the anterior part of the hindgut. Digestive processes include the activity of carbohydrases, proteases, dehydrogenases, esterases, lipases, arylamidases and oxidases, as well as the nutritional utilization of microbial cells. Absorption of nutrients is brought about by the hepatopancreas and/or the hindgut epithelium, the latter being also involved in osmoregulation and water balance. Minerals and metal cations are effectively extracted from the food, while overall assimilation efficiencies may be low. Heavy metals are stored in special organelles of the hepatopancreatic tissue. Nitrogenous waste products are excreted via ammonia in its gaseous form, with only little egested along with the faeces. Nonetheless, faeces are characterized by high nitrogen content and provide a favourable substrate for microbial colonization and growth. The presence of a dense microbial population on faecal material is one reason for the coprophagous behaviour of terrestrial isopods. For the same reason, terrestrial isopods prefer feeding on decaying rather than fresh leaf litter, the former also being more palatable and easier to digest. Acceptable food sources are detected through distance and contact chemoreceptors. The 'quality' of the food source determines individual growth, fecundity and mortality, and thus maintenance at the population level. Due to their physiological adaptations to feeding on and digesting leaf litter, terrestrial isopods contribute strongly to nutrient recycling during decomposition processes. Yet, many of these adaptations are still not well understood.

External Microflora of a Marine Wood-Boring Isopod

Bacteria associated with the marine wood-boring isopod Limnoria lignorum were enumerated by acridine orange epifluorescence microscopy and by plate counts on several media; the plate-viable bacteria were isolated and identified. Similar procedures were followed to enumerate and identify bacteria associated with the wood substrate from which the isopods were collected and with the surrounding water from the isopod habitat. Approximately 1.4 × 10 7 bacterial cells were associated with each individual L. lignorum. Aeromonas hydrophila, Pseudomonas , and Vibrio were the most common genera in the isopod microflora. Wood from L. lignorum burrows had an associated bacterial flora of 1.6 × 10 7 cells per mg (damp weight). A. hydrophila also predominated in the wood microflora. The water from which the isopod population was collected contained 2.3 × 10 6 bacteria per ml. Pseudomonas and Vibrio species were very common in the water microflora, but A. hydrophila was not detected. Interactions between the isopod, its associated microorganisms, and the microorganisms within the wood substrate are discussed in the light of the known absence of a resident digestive tract microflora in these animals.